Multiple sequence alignment - TraesCS7D01G278600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G278600 chr7D 100.000 5548 0 0 1 5548 268831539 268837086 0.000000e+00 10246.0
1 TraesCS7D01G278600 chr7D 96.585 205 6 1 2221 2425 413374161 413373958 6.880000e-89 339.0
2 TraesCS7D01G278600 chr7D 77.440 461 81 18 3632 4079 27094344 27093894 2.570000e-63 254.0
3 TraesCS7D01G278600 chr7D 76.906 459 84 17 3632 4079 27047923 27047476 2.000000e-59 241.0
4 TraesCS7D01G278600 chr7D 75.381 459 95 15 3631 4079 26819054 26818604 7.290000e-49 206.0
5 TraesCS7D01G278600 chr7D 79.583 240 37 10 4307 4538 27047352 27047117 1.600000e-35 161.0
6 TraesCS7D01G278600 chr7D 78.926 242 38 10 4307 4539 27093807 27093570 9.630000e-33 152.0
7 TraesCS7D01G278600 chr7D 82.468 154 22 5 3935 4087 26791564 26791415 4.510000e-26 130.0
8 TraesCS7D01G278600 chr7D 76.446 242 46 8 4307 4539 26833835 26833596 2.710000e-23 121.0
9 TraesCS7D01G278600 chr7D 88.298 94 10 1 3935 4028 26981990 26981898 1.630000e-20 111.0
10 TraesCS7D01G278600 chr7D 79.333 150 29 2 3938 4087 26834113 26833966 2.730000e-18 104.0
11 TraesCS7D01G278600 chr7B 95.286 2397 78 14 2417 4793 272754950 272752569 0.000000e+00 3768.0
12 TraesCS7D01G278600 chr7B 96.141 1166 36 5 667 1828 272756093 272754933 0.000000e+00 1895.0
13 TraesCS7D01G278600 chr7B 92.446 781 34 18 4785 5548 272750234 272749462 0.000000e+00 1092.0
14 TraesCS7D01G278600 chr7B 95.631 206 8 1 2225 2430 728934993 728935197 4.140000e-86 329.0
15 TraesCS7D01G278600 chr7B 95.050 202 9 1 2237 2438 504460344 504460144 3.230000e-82 316.0
16 TraesCS7D01G278600 chr7B 83.333 270 21 6 415 662 272776775 272776508 1.550000e-55 228.0
17 TraesCS7D01G278600 chr7B 98.182 55 1 0 282 336 272776826 272776772 4.570000e-16 97.1
18 TraesCS7D01G278600 chr7A 92.995 2427 91 37 2417 4785 295097793 295100198 0.000000e+00 3467.0
19 TraesCS7D01G278600 chr7A 95.106 1083 40 6 754 1828 295096733 295097810 0.000000e+00 1694.0
20 TraesCS7D01G278600 chr7A 93.712 652 26 9 4911 5548 295212360 295213010 0.000000e+00 963.0
21 TraesCS7D01G278600 chr7A 84.110 365 37 6 415 758 295096337 295096701 3.200000e-87 333.0
22 TraesCS7D01G278600 chr7A 75.546 458 94 15 3632 4079 27280111 27279662 5.630000e-50 209.0
23 TraesCS7D01G278600 chr7A 77.078 397 62 20 3632 4015 27289377 27288997 9.420000e-48 202.0
24 TraesCS7D01G278600 chr7A 78.750 240 43 8 4307 4539 27288846 27288608 2.680000e-33 154.0
25 TraesCS7D01G278600 chr7A 93.023 86 5 1 333 417 573673132 573673047 2.100000e-24 124.0
26 TraesCS7D01G278600 chr7A 79.739 153 26 5 3935 4086 27233140 27232992 7.600000e-19 106.0
27 TraesCS7D01G278600 chr6B 93.635 597 25 5 1829 2425 13354 13937 0.000000e+00 880.0
28 TraesCS7D01G278600 chr6B 84.942 259 27 8 5250 5508 558930467 558930713 9.230000e-63 252.0
29 TraesCS7D01G278600 chr5A 93.098 594 28 5 1832 2425 605757466 605756886 0.000000e+00 857.0
30 TraesCS7D01G278600 chr5A 96.020 201 8 0 2225 2425 606545997 606546197 1.490000e-85 327.0
31 TraesCS7D01G278600 chr5B 92.630 597 31 7 1829 2425 576054373 576054956 0.000000e+00 846.0
32 TraesCS7D01G278600 chr5B 91.209 91 7 1 329 418 178981506 178981596 7.550000e-24 122.0
33 TraesCS7D01G278600 chr5B 92.045 88 6 1 331 417 253207074 253207161 7.550000e-24 122.0
34 TraesCS7D01G278600 chr4A 91.761 619 25 11 1832 2425 387112481 387111864 0.000000e+00 837.0
35 TraesCS7D01G278600 chr4A 96.517 201 7 0 2225 2425 628007997 628007797 3.200000e-87 333.0
36 TraesCS7D01G278600 chr4A 80.071 281 47 9 2820 3093 704647040 704646762 3.390000e-47 200.0
37 TraesCS7D01G278600 chr4A 81.172 239 34 9 4309 4539 704629039 704628804 1.230000e-41 182.0
38 TraesCS7D01G278600 chr4A 80.913 241 34 10 4307 4539 704645112 704644876 4.420000e-41 180.0
39 TraesCS7D01G278600 chr4A 84.028 144 19 4 3937 4079 704598191 704598051 9.690000e-28 135.0
40 TraesCS7D01G278600 chr4A 81.046 153 23 4 3938 4088 710852235 710852087 3.510000e-22 117.0
41 TraesCS7D01G278600 chr3A 91.011 623 31 10 1828 2425 603915838 603916460 0.000000e+00 817.0
42 TraesCS7D01G278600 chr3A 96.020 201 8 0 2225 2425 77482557 77482357 1.490000e-85 327.0
43 TraesCS7D01G278600 chr2A 90.851 623 32 10 1828 2425 44026004 44025382 0.000000e+00 811.0
44 TraesCS7D01G278600 chr4D 95.767 378 15 1 1828 2205 163886270 163885894 4.750000e-170 608.0
45 TraesCS7D01G278600 chr4D 94.662 281 14 1 1 281 8274698 8274419 8.540000e-118 435.0
46 TraesCS7D01G278600 chr4D 94.346 283 16 0 2 284 315600939 315600657 8.540000e-118 435.0
47 TraesCS7D01G278600 chr4D 95.567 203 9 0 2223 2425 507480964 507480762 5.360000e-85 326.0
48 TraesCS7D01G278600 chr6D 95.503 378 17 0 1828 2205 36113038 36112661 6.150000e-169 604.0
49 TraesCS7D01G278600 chr6D 93.448 290 18 1 1 289 461515497 461515208 3.970000e-116 429.0
50 TraesCS7D01G278600 chr2D 95.238 378 16 2 1829 2205 6112880 6113256 1.030000e-166 597.0
51 TraesCS7D01G278600 chr3D 94.662 281 15 0 1 281 559109205 559109485 2.370000e-118 436.0
52 TraesCS7D01G278600 chr3D 85.149 101 9 2 5273 5373 594957092 594956998 1.270000e-16 99.0
53 TraesCS7D01G278600 chr2B 94.662 281 15 0 1 281 472911653 472911373 2.370000e-118 436.0
54 TraesCS7D01G278600 chr2B 92.568 296 20 2 1 296 156589173 156589466 1.850000e-114 424.0
55 TraesCS7D01G278600 chr2B 95.122 205 9 1 2225 2429 698003317 698003520 6.930000e-84 322.0
56 TraesCS7D01G278600 chr5D 93.471 291 19 0 1 291 9077446 9077736 3.070000e-117 433.0
57 TraesCS7D01G278600 chr5D 93.407 91 5 1 332 421 60072263 60072173 3.490000e-27 134.0
58 TraesCS7D01G278600 chr3B 92.691 301 19 3 1 298 809036831 809037131 1.100000e-116 431.0
59 TraesCS7D01G278600 chr3B 88.158 76 9 0 5274 5349 798407012 798406937 2.130000e-14 91.6
60 TraesCS7D01G278600 chr4B 92.282 298 21 2 1 298 647646069 647646364 6.650000e-114 422.0
61 TraesCS7D01G278600 chr4B 92.045 88 6 1 331 417 282239787 282239874 7.550000e-24 122.0
62 TraesCS7D01G278600 chr1A 95.652 207 9 0 2223 2429 516713563 516713357 3.200000e-87 333.0
63 TraesCS7D01G278600 chr1A 88.123 261 26 4 5250 5509 554933696 554933952 6.980000e-79 305.0
64 TraesCS7D01G278600 chr6A 95.349 86 3 1 334 418 15768234 15768149 9.690000e-28 135.0
65 TraesCS7D01G278600 chr6A 94.186 86 4 1 333 417 607959946 607960031 4.510000e-26 130.0
66 TraesCS7D01G278600 chr1D 91.667 96 6 2 324 418 204481554 204481648 1.250000e-26 132.0
67 TraesCS7D01G278600 chr1D 93.023 86 4 2 333 417 90695851 90695935 2.100000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G278600 chr7D 268831539 268837086 5547 False 10246.000000 10246 100.000000 1 5548 1 chr7D.!!$F1 5547
1 TraesCS7D01G278600 chr7D 27093570 27094344 774 True 203.000000 254 78.183000 3632 4539 2 chr7D.!!$R7 907
2 TraesCS7D01G278600 chr7D 27047117 27047923 806 True 201.000000 241 78.244500 3632 4538 2 chr7D.!!$R6 906
3 TraesCS7D01G278600 chr7B 272749462 272756093 6631 True 2251.666667 3768 94.624333 667 5548 3 chr7B.!!$R2 4881
4 TraesCS7D01G278600 chr7A 295096337 295100198 3861 False 1831.333333 3467 90.737000 415 4785 3 chr7A.!!$F2 4370
5 TraesCS7D01G278600 chr7A 295212360 295213010 650 False 963.000000 963 93.712000 4911 5548 1 chr7A.!!$F1 637
6 TraesCS7D01G278600 chr6B 13354 13937 583 False 880.000000 880 93.635000 1829 2425 1 chr6B.!!$F1 596
7 TraesCS7D01G278600 chr5A 605756886 605757466 580 True 857.000000 857 93.098000 1832 2425 1 chr5A.!!$R1 593
8 TraesCS7D01G278600 chr5B 576054373 576054956 583 False 846.000000 846 92.630000 1829 2425 1 chr5B.!!$F3 596
9 TraesCS7D01G278600 chr4A 387111864 387112481 617 True 837.000000 837 91.761000 1832 2425 1 chr4A.!!$R1 593
10 TraesCS7D01G278600 chr3A 603915838 603916460 622 False 817.000000 817 91.011000 1828 2425 1 chr3A.!!$F1 597
11 TraesCS7D01G278600 chr2A 44025382 44026004 622 True 811.000000 811 90.851000 1828 2425 1 chr2A.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 349 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.0 4.37 F
349 350 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.0 4.00 F
350 351 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.0 2.74 F
674 696 1.058404 GAACAGTTACGCGACTCCAC 58.942 55.000 15.93 1.05 0.0 4.02 F
963 1026 1.472662 CCACTCGTCCACTCCCACTT 61.473 60.000 0.00 0.00 0.0 3.16 F
1885 1956 1.682451 GGTCCGGATTCATCGACCCA 61.682 60.000 7.81 0.00 0.0 4.51 F
2344 2478 1.692519 AGAGATGTATACCCCCGTTGC 59.307 52.381 0.00 0.00 0.0 4.17 F
3456 3608 1.768870 TGCATACCTTCCCTAGCCTTC 59.231 52.381 0.00 0.00 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1938 0.249489 CTGGGTCGATGAATCCGGAC 60.249 60.0 6.12 0.0 0.00 4.79 R
1956 2027 0.527817 GTCGCCGAACCTGAATCGAT 60.528 55.0 0.00 0.0 42.76 3.59 R
2166 2237 1.089920 AACTGGCTGCATCGTTGATC 58.910 50.0 0.50 0.0 0.00 2.92 R
2432 2566 0.111253 AAGGAGTTCACCTTGGCCAG 59.889 55.0 5.11 0.0 46.85 4.85 R
2732 2883 5.569059 GCAATTAGAAACATGAAGGACAACG 59.431 40.0 0.00 0.0 0.00 4.10 R
3011 3163 0.328258 GGCTGCCTTTAGGACAAGGA 59.672 55.0 12.43 0.0 45.79 3.36 R
3605 3757 0.865769 AAAGTTACGCAAGAGGCACG 59.134 50.0 0.00 0.0 45.17 5.34 R
5041 7647 0.392461 TTTGGATGTAGTGGGCTCGC 60.392 55.0 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.856135 GGATCCTTCCGATTTACGTTATTT 57.144 37.500 3.84 0.00 40.78 1.40
24 25 7.255491 GGATCCTTCCGATTTACGTTATTTT 57.745 36.000 3.84 0.00 40.78 1.82
25 26 7.700505 GGATCCTTCCGATTTACGTTATTTTT 58.299 34.615 3.84 0.00 40.78 1.94
26 27 7.854422 GGATCCTTCCGATTTACGTTATTTTTC 59.146 37.037 3.84 0.00 40.78 2.29
27 28 7.670009 TCCTTCCGATTTACGTTATTTTTCA 57.330 32.000 0.00 0.00 40.78 2.69
28 29 8.271312 TCCTTCCGATTTACGTTATTTTTCAT 57.729 30.769 0.00 0.00 40.78 2.57
29 30 8.392612 TCCTTCCGATTTACGTTATTTTTCATC 58.607 33.333 0.00 0.00 40.78 2.92
30 31 7.372396 CCTTCCGATTTACGTTATTTTTCATCG 59.628 37.037 0.00 0.00 40.78 3.84
31 32 6.946508 CCGATTTACGTTATTTTTCATCGG 57.053 37.500 8.24 8.24 44.22 4.18
32 33 5.394322 CCGATTTACGTTATTTTTCATCGGC 59.606 40.000 9.37 0.00 43.83 5.54
33 34 5.111465 CGATTTACGTTATTTTTCATCGGCG 59.889 40.000 0.00 0.00 37.22 6.46
34 35 2.817538 ACGTTATTTTTCATCGGCGG 57.182 45.000 7.21 0.00 0.00 6.13
35 36 1.202098 ACGTTATTTTTCATCGGCGGC 60.202 47.619 7.21 0.00 0.00 6.53
36 37 1.462791 GTTATTTTTCATCGGCGGCG 58.537 50.000 27.15 27.15 0.00 6.46
37 38 0.378962 TTATTTTTCATCGGCGGCGG 59.621 50.000 31.73 16.54 0.00 6.13
38 39 0.745128 TATTTTTCATCGGCGGCGGT 60.745 50.000 31.73 23.77 0.00 5.68
39 40 1.591504 ATTTTTCATCGGCGGCGGTT 61.592 50.000 31.73 16.58 0.00 4.44
40 41 2.465097 TTTTTCATCGGCGGCGGTTG 62.465 55.000 31.73 26.46 0.00 3.77
49 50 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
50 51 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
51 52 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
52 53 2.113139 CGGTTGCTGTTCTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
53 54 2.260869 CGGTTGCTGTTCTGGGGTG 61.261 63.158 0.00 0.00 0.00 4.61
54 55 2.564721 GGTTGCTGTTCTGGGGTGC 61.565 63.158 0.00 0.00 0.00 5.01
55 56 1.529244 GTTGCTGTTCTGGGGTGCT 60.529 57.895 0.00 0.00 0.00 4.40
56 57 1.529010 TTGCTGTTCTGGGGTGCTG 60.529 57.895 0.00 0.00 0.00 4.41
57 58 2.674380 GCTGTTCTGGGGTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
58 59 2.839098 CTGTTCTGGGGTGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
59 60 1.302832 CTGTTCTGGGGTGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
60 61 2.034221 GTTCTGGGGTGCTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
61 62 2.121963 TTCTGGGGTGCTGGTCCT 60.122 61.111 0.00 0.00 0.00 3.85
62 63 1.159905 TTCTGGGGTGCTGGTCCTA 59.840 57.895 0.00 0.00 0.00 2.94
63 64 0.253160 TTCTGGGGTGCTGGTCCTAT 60.253 55.000 0.00 0.00 0.00 2.57
64 65 0.982852 TCTGGGGTGCTGGTCCTATG 60.983 60.000 0.00 0.00 0.00 2.23
65 66 0.982852 CTGGGGTGCTGGTCCTATGA 60.983 60.000 0.00 0.00 0.00 2.15
66 67 0.982852 TGGGGTGCTGGTCCTATGAG 60.983 60.000 0.00 0.00 0.00 2.90
67 68 1.700042 GGGGTGCTGGTCCTATGAGG 61.700 65.000 0.00 0.00 36.46 3.86
68 69 1.147153 GGTGCTGGTCCTATGAGGC 59.853 63.158 0.00 0.00 34.61 4.70
69 70 1.147153 GTGCTGGTCCTATGAGGCC 59.853 63.158 0.00 0.00 34.61 5.19
70 71 1.003442 TGCTGGTCCTATGAGGCCT 59.997 57.895 3.86 3.86 34.61 5.19
71 72 0.621571 TGCTGGTCCTATGAGGCCTT 60.622 55.000 6.77 0.00 34.61 4.35
72 73 1.343985 TGCTGGTCCTATGAGGCCTTA 60.344 52.381 6.77 1.66 34.61 2.69
73 74 1.346068 GCTGGTCCTATGAGGCCTTAG 59.654 57.143 6.77 5.46 34.61 2.18
74 75 1.346068 CTGGTCCTATGAGGCCTTAGC 59.654 57.143 6.77 0.00 34.61 3.09
75 76 1.343985 TGGTCCTATGAGGCCTTAGCA 60.344 52.381 6.77 0.00 42.56 3.49
76 77 1.070914 GGTCCTATGAGGCCTTAGCAC 59.929 57.143 6.77 1.09 42.56 4.40
77 78 1.040646 TCCTATGAGGCCTTAGCACG 58.959 55.000 6.77 0.00 42.56 5.34
78 79 1.040646 CCTATGAGGCCTTAGCACGA 58.959 55.000 6.77 0.00 42.56 4.35
79 80 1.269831 CCTATGAGGCCTTAGCACGAC 60.270 57.143 6.77 0.00 42.56 4.34
80 81 0.384309 TATGAGGCCTTAGCACGACG 59.616 55.000 6.77 0.00 42.56 5.12
81 82 1.320344 ATGAGGCCTTAGCACGACGA 61.320 55.000 6.77 0.00 42.56 4.20
82 83 1.516603 GAGGCCTTAGCACGACGAC 60.517 63.158 6.77 0.00 42.56 4.34
83 84 1.935327 GAGGCCTTAGCACGACGACT 61.935 60.000 6.77 0.59 42.56 4.18
84 85 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
85 86 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
86 87 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
87 88 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
88 89 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
89 90 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
90 91 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
91 92 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
92 93 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
93 94 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
94 95 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
95 96 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
96 97 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
97 98 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
98 99 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
99 100 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
100 101 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
101 102 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
102 103 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
103 104 4.342359 ACTTCCCGACTGTCTACTACAAT 58.658 43.478 6.21 0.00 37.74 2.71
104 105 5.503927 ACTTCCCGACTGTCTACTACAATA 58.496 41.667 6.21 0.00 37.74 1.90
105 106 5.948162 ACTTCCCGACTGTCTACTACAATAA 59.052 40.000 6.21 0.00 37.74 1.40
106 107 6.095160 ACTTCCCGACTGTCTACTACAATAAG 59.905 42.308 6.21 0.00 37.74 1.73
107 108 5.503927 TCCCGACTGTCTACTACAATAAGT 58.496 41.667 6.21 0.00 37.74 2.24
108 109 5.948162 TCCCGACTGTCTACTACAATAAGTT 59.052 40.000 6.21 0.00 37.74 2.66
109 110 6.034591 CCCGACTGTCTACTACAATAAGTTG 58.965 44.000 6.21 0.00 37.74 3.16
118 119 2.561478 ACAATAAGTTGTGACCGGCT 57.439 45.000 0.00 0.00 46.43 5.52
119 120 2.858745 ACAATAAGTTGTGACCGGCTT 58.141 42.857 0.00 0.00 46.43 4.35
120 121 2.812011 ACAATAAGTTGTGACCGGCTTC 59.188 45.455 0.00 0.00 46.43 3.86
121 122 1.722011 ATAAGTTGTGACCGGCTTCG 58.278 50.000 0.00 0.00 0.00 3.79
132 133 4.918201 GGCTTCGGCGATGGAGGG 62.918 72.222 22.01 5.72 42.91 4.30
133 134 4.918201 GCTTCGGCGATGGAGGGG 62.918 72.222 22.01 4.17 0.00 4.79
134 135 4.918201 CTTCGGCGATGGAGGGGC 62.918 72.222 11.76 0.00 0.00 5.80
138 139 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
139 140 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
140 141 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
141 142 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
142 143 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
167 168 4.436998 CCTTCGGCTCGCTTCGGT 62.437 66.667 0.00 0.00 0.00 4.69
168 169 3.181967 CTTCGGCTCGCTTCGGTG 61.182 66.667 0.00 0.00 0.00 4.94
172 173 3.793144 GGCTCGCTTCGGTGCTTG 61.793 66.667 0.00 0.00 0.00 4.01
173 174 3.044305 GCTCGCTTCGGTGCTTGT 61.044 61.111 0.00 0.00 0.00 3.16
174 175 1.736645 GCTCGCTTCGGTGCTTGTA 60.737 57.895 0.00 0.00 0.00 2.41
175 176 1.687494 GCTCGCTTCGGTGCTTGTAG 61.687 60.000 0.00 0.00 0.00 2.74
176 177 0.388649 CTCGCTTCGGTGCTTGTAGT 60.389 55.000 0.00 0.00 0.00 2.73
177 178 0.388134 TCGCTTCGGTGCTTGTAGTC 60.388 55.000 0.00 0.00 0.00 2.59
178 179 1.674611 CGCTTCGGTGCTTGTAGTCG 61.675 60.000 0.00 0.00 0.00 4.18
179 180 1.956620 GCTTCGGTGCTTGTAGTCGC 61.957 60.000 0.00 0.00 0.00 5.19
180 181 1.352156 CTTCGGTGCTTGTAGTCGCC 61.352 60.000 0.00 0.00 0.00 5.54
181 182 2.775032 TTCGGTGCTTGTAGTCGCCC 62.775 60.000 0.00 0.00 0.00 6.13
182 183 2.436115 GGTGCTTGTAGTCGCCCC 60.436 66.667 0.00 0.00 0.00 5.80
183 184 2.663196 GTGCTTGTAGTCGCCCCT 59.337 61.111 0.00 0.00 0.00 4.79
184 185 1.610554 GGTGCTTGTAGTCGCCCCTA 61.611 60.000 0.00 0.00 0.00 3.53
185 186 0.179108 GTGCTTGTAGTCGCCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
186 187 1.327690 TGCTTGTAGTCGCCCCTAGG 61.328 60.000 0.06 0.06 0.00 3.02
187 188 1.328430 GCTTGTAGTCGCCCCTAGGT 61.328 60.000 8.29 0.00 34.57 3.08
188 189 0.460311 CTTGTAGTCGCCCCTAGGTG 59.540 60.000 8.29 0.00 45.77 4.00
189 190 0.974010 TTGTAGTCGCCCCTAGGTGG 60.974 60.000 8.29 9.89 44.41 4.61
190 191 1.380920 GTAGTCGCCCCTAGGTGGT 60.381 63.158 8.29 0.00 44.41 4.16
191 192 1.076485 TAGTCGCCCCTAGGTGGTC 60.076 63.158 8.29 4.68 44.41 4.02
192 193 1.578215 TAGTCGCCCCTAGGTGGTCT 61.578 60.000 8.29 10.68 44.41 3.85
193 194 1.076485 GTCGCCCCTAGGTGGTCTA 60.076 63.158 8.29 0.00 44.41 2.59
194 195 1.076485 TCGCCCCTAGGTGGTCTAC 60.076 63.158 8.29 0.00 44.41 2.59
195 196 2.487532 CGCCCCTAGGTGGTCTACG 61.488 68.421 8.29 4.16 40.23 3.51
196 197 2.132352 GCCCCTAGGTGGTCTACGG 61.132 68.421 8.29 0.00 34.57 4.02
197 198 1.616921 CCCCTAGGTGGTCTACGGA 59.383 63.158 8.29 0.00 0.00 4.69
198 199 0.187851 CCCCTAGGTGGTCTACGGAT 59.812 60.000 8.29 0.00 0.00 4.18
199 200 1.618487 CCCTAGGTGGTCTACGGATC 58.382 60.000 8.29 0.00 0.00 3.36
200 201 1.145325 CCCTAGGTGGTCTACGGATCT 59.855 57.143 8.29 0.00 0.00 2.75
201 202 2.231529 CCTAGGTGGTCTACGGATCTG 58.768 57.143 0.00 0.00 0.00 2.90
202 203 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
203 204 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
204 205 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
205 206 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
206 207 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
207 208 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
208 209 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
209 210 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
210 211 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
211 212 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
212 213 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
213 214 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
214 215 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
215 216 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
219 220 9.408648 ACGGATCTGGATGTAATTTTTATTTCT 57.591 29.630 6.47 0.00 0.00 2.52
220 221 9.669353 CGGATCTGGATGTAATTTTTATTTCTG 57.331 33.333 0.00 0.00 0.00 3.02
235 236 9.710979 TTTTTATTTCTGAAGTTCGTTGTACTG 57.289 29.630 0.00 0.00 0.00 2.74
236 237 4.789095 TTTCTGAAGTTCGTTGTACTGC 57.211 40.909 0.00 0.00 0.00 4.40
237 238 2.750948 TCTGAAGTTCGTTGTACTGCC 58.249 47.619 0.00 0.00 0.00 4.85
238 239 2.101750 TCTGAAGTTCGTTGTACTGCCA 59.898 45.455 0.00 0.00 0.00 4.92
239 240 2.206750 TGAAGTTCGTTGTACTGCCAC 58.793 47.619 0.00 0.00 0.00 5.01
240 241 1.191647 GAAGTTCGTTGTACTGCCACG 59.808 52.381 0.00 0.00 0.00 4.94
241 242 0.386476 AGTTCGTTGTACTGCCACGA 59.614 50.000 0.00 0.36 0.00 4.35
242 243 1.000506 AGTTCGTTGTACTGCCACGAT 59.999 47.619 9.79 0.00 32.77 3.73
243 244 1.796459 GTTCGTTGTACTGCCACGATT 59.204 47.619 9.79 0.00 32.77 3.34
244 245 1.424403 TCGTTGTACTGCCACGATTG 58.576 50.000 0.00 0.00 0.00 2.67
261 262 7.719778 CACGATTGGAGATGAATAGATTGAA 57.280 36.000 0.00 0.00 0.00 2.69
262 263 8.146479 CACGATTGGAGATGAATAGATTGAAA 57.854 34.615 0.00 0.00 0.00 2.69
263 264 8.281194 CACGATTGGAGATGAATAGATTGAAAG 58.719 37.037 0.00 0.00 0.00 2.62
264 265 7.989741 ACGATTGGAGATGAATAGATTGAAAGT 59.010 33.333 0.00 0.00 0.00 2.66
265 266 8.834465 CGATTGGAGATGAATAGATTGAAAGTT 58.166 33.333 0.00 0.00 0.00 2.66
270 271 9.794685 GGAGATGAATAGATTGAAAGTTTTTCC 57.205 33.333 0.00 0.00 0.00 3.13
271 272 9.495754 GAGATGAATAGATTGAAAGTTTTTCCG 57.504 33.333 0.00 0.00 0.00 4.30
272 273 9.014297 AGATGAATAGATTGAAAGTTTTTCCGT 57.986 29.630 0.00 0.00 0.00 4.69
324 325 9.821662 GTTGTATAAGAACAAACAACTATGGAC 57.178 33.333 9.33 0.00 45.16 4.02
325 326 9.562408 TTGTATAAGAACAAACAACTATGGACA 57.438 29.630 0.00 0.00 36.45 4.02
326 327 9.562408 TGTATAAGAACAAACAACTATGGACAA 57.438 29.630 0.00 0.00 0.00 3.18
328 329 8.918202 ATAAGAACAAACAACTATGGACAAGA 57.082 30.769 0.00 0.00 0.00 3.02
329 330 7.639113 AAGAACAAACAACTATGGACAAGAA 57.361 32.000 0.00 0.00 0.00 2.52
330 331 7.639113 AGAACAAACAACTATGGACAAGAAA 57.361 32.000 0.00 0.00 0.00 2.52
331 332 8.237811 AGAACAAACAACTATGGACAAGAAAT 57.762 30.769 0.00 0.00 0.00 2.17
332 333 8.137437 AGAACAAACAACTATGGACAAGAAATG 58.863 33.333 0.00 0.00 0.00 2.32
334 335 8.458573 ACAAACAACTATGGACAAGAAATGTA 57.541 30.769 0.00 0.00 44.12 2.29
335 336 8.349983 ACAAACAACTATGGACAAGAAATGTAC 58.650 33.333 0.00 0.00 44.12 2.90
336 337 8.567948 CAAACAACTATGGACAAGAAATGTACT 58.432 33.333 0.00 0.00 43.90 2.73
337 338 7.907214 ACAACTATGGACAAGAAATGTACTC 57.093 36.000 0.00 0.00 43.90 2.59
338 339 6.879458 ACAACTATGGACAAGAAATGTACTCC 59.121 38.462 0.00 0.00 43.90 3.85
339 340 5.990668 ACTATGGACAAGAAATGTACTCCC 58.009 41.667 0.00 0.00 43.90 4.30
340 341 5.726793 ACTATGGACAAGAAATGTACTCCCT 59.273 40.000 0.00 0.00 43.90 4.20
341 342 4.553330 TGGACAAGAAATGTACTCCCTC 57.447 45.455 0.00 0.00 43.90 4.30
342 343 3.263425 TGGACAAGAAATGTACTCCCTCC 59.737 47.826 0.00 0.00 43.90 4.30
343 344 3.522553 GACAAGAAATGTACTCCCTCCG 58.477 50.000 0.00 0.00 44.12 4.63
344 345 2.904434 ACAAGAAATGTACTCCCTCCGT 59.096 45.455 0.00 0.00 41.63 4.69
345 346 3.056035 ACAAGAAATGTACTCCCTCCGTC 60.056 47.826 0.00 0.00 41.63 4.79
346 347 2.108970 AGAAATGTACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
347 348 1.138464 GAAATGTACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
348 349 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
349 350 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
350 351 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
351 352 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
352 353 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
353 354 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
354 355 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
355 356 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
356 357 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
357 358 3.961408 CTCCCTCCGTCCCATAATATAGG 59.039 52.174 0.00 0.00 0.00 2.57
358 359 3.599240 TCCCTCCGTCCCATAATATAGGA 59.401 47.826 0.00 0.00 0.00 2.94
359 360 3.705072 CCCTCCGTCCCATAATATAGGAC 59.295 52.174 7.65 7.65 45.49 3.85
411 412 8.480643 AAAAGTCTTACATTATGAGACGAAGG 57.519 34.615 0.00 0.00 46.23 3.46
412 413 6.150396 AGTCTTACATTATGAGACGAAGGG 57.850 41.667 0.00 0.00 46.23 3.95
413 414 5.892119 AGTCTTACATTATGAGACGAAGGGA 59.108 40.000 0.00 0.00 46.23 4.20
467 468 4.753233 CTTCAGATAGAAGTCCACTGGTG 58.247 47.826 0.00 0.00 46.97 4.17
481 482 3.253188 CCACTGGTGTTGTTGATAACCTG 59.747 47.826 0.00 0.00 37.58 4.00
482 483 2.884639 ACTGGTGTTGTTGATAACCTGC 59.115 45.455 0.00 0.00 35.65 4.85
484 485 3.291584 TGGTGTTGTTGATAACCTGCAA 58.708 40.909 0.00 0.00 33.65 4.08
485 486 3.701542 TGGTGTTGTTGATAACCTGCAAA 59.298 39.130 0.00 0.00 33.65 3.68
487 488 5.163364 TGGTGTTGTTGATAACCTGCAAATT 60.163 36.000 0.00 0.00 33.65 1.82
488 489 5.757808 GGTGTTGTTGATAACCTGCAAATTT 59.242 36.000 0.00 0.00 0.00 1.82
545 546 3.576982 AGATGGTGTTTCTTGTAGGACGA 59.423 43.478 0.00 0.00 0.00 4.20
550 551 2.251893 GTTTCTTGTAGGACGAGAGCG 58.748 52.381 0.00 0.00 39.61 5.03
565 587 3.241932 CGAGAGCGAGCAAGAAGAAAATC 60.242 47.826 0.00 0.00 40.82 2.17
571 593 6.913170 AGCGAGCAAGAAGAAAATCAAAATA 58.087 32.000 0.00 0.00 0.00 1.40
615 637 9.058424 GTTTTTCTTGTGTTGTTACTTGTCTAC 57.942 33.333 0.00 0.00 0.00 2.59
632 654 8.857216 ACTTGTCTACGTTTTATTCACTTATCG 58.143 33.333 0.00 0.00 0.00 2.92
674 696 1.058404 GAACAGTTACGCGACTCCAC 58.942 55.000 15.93 1.05 0.00 4.02
705 727 5.045872 GGTATACGGCTTCGATTTACAGTT 58.954 41.667 0.00 0.00 37.63 3.16
818 877 3.050275 GTGCACAAGTCCCTCCGC 61.050 66.667 13.17 0.00 0.00 5.54
890 949 3.360956 CGCCACGTAATAATAAACGGACG 60.361 47.826 0.00 0.00 43.25 4.79
938 997 2.027625 CTTCTCCGTGCGGACAACC 61.028 63.158 9.48 0.00 39.76 3.77
963 1026 1.472662 CCACTCGTCCACTCCCACTT 61.473 60.000 0.00 0.00 0.00 3.16
1087 1151 3.953775 CCATCCGGGGGAATCGGG 61.954 72.222 0.00 0.00 46.78 5.14
1281 1351 2.679287 ACCGGGGTCTTCGTCCTC 60.679 66.667 6.32 0.00 0.00 3.71
1310 1380 2.189521 CCCCTTCAATCCCCGTCG 59.810 66.667 0.00 0.00 0.00 5.12
1388 1458 9.654417 GAACACCTCAATTGAATTTGAATTTTG 57.346 29.630 9.88 0.00 35.31 2.44
1437 1507 8.040132 TGAATGGAATTGGGAAATGTTTATGTC 58.960 33.333 0.00 0.00 36.07 3.06
1451 1521 8.766994 AATGTTTATGTCCTAGCCAATTATGT 57.233 30.769 0.00 0.00 0.00 2.29
1452 1522 9.860650 AATGTTTATGTCCTAGCCAATTATGTA 57.139 29.630 0.00 0.00 0.00 2.29
1453 1523 8.671384 TGTTTATGTCCTAGCCAATTATGTAC 57.329 34.615 0.00 0.00 0.00 2.90
1569 1639 2.424601 CGGATGTGTGAATTCCATTGCT 59.575 45.455 2.27 0.00 0.00 3.91
1608 1678 5.997129 AGCAATTTCAGGTGGGTTTTATTTG 59.003 36.000 0.00 0.00 0.00 2.32
1655 1725 5.349817 CAGATATGGAGTGACACTTGTTGAC 59.650 44.000 10.01 1.62 0.00 3.18
1726 1796 5.576563 TTCCTCTGATTCCCACAGTTTTA 57.423 39.130 0.00 0.00 36.81 1.52
1830 1901 3.495331 AGCAACCATTGTGTGTATCCAA 58.505 40.909 0.00 0.00 0.00 3.53
1885 1956 1.682451 GGTCCGGATTCATCGACCCA 61.682 60.000 7.81 0.00 0.00 4.51
1892 1963 3.741075 CGGATTCATCGACCCAGAATCAA 60.741 47.826 22.35 0.00 45.82 2.57
2000 2071 4.058817 GACAGTCTTGGTTCTTGAATCGT 58.941 43.478 0.00 0.00 0.00 3.73
2035 2106 2.435805 AGGTCAGCCATATCAATCACGT 59.564 45.455 0.00 0.00 37.19 4.49
2205 2276 3.933048 CTCCCAGCCCAGCCAGTTG 62.933 68.421 0.00 0.00 0.00 3.16
2223 2313 4.106925 CTCCCAGCCCAGCCAGTC 62.107 72.222 0.00 0.00 0.00 3.51
2227 2317 3.970410 CAGCCCAGCCAGTCCCAA 61.970 66.667 0.00 0.00 0.00 4.12
2228 2318 3.971702 AGCCCAGCCAGTCCCAAC 61.972 66.667 0.00 0.00 0.00 3.77
2293 2427 4.394439 TCATCGTACCGGAATTGATTGA 57.606 40.909 9.46 0.00 0.00 2.57
2298 2432 3.554324 CGTACCGGAATTGATTGAATCGT 59.446 43.478 9.46 0.00 0.00 3.73
2340 2474 3.439476 CGTTCTAGAGATGTATACCCCCG 59.561 52.174 0.00 0.00 0.00 5.73
2341 2475 4.405548 GTTCTAGAGATGTATACCCCCGT 58.594 47.826 0.00 0.00 0.00 5.28
2344 2478 1.692519 AGAGATGTATACCCCCGTTGC 59.307 52.381 0.00 0.00 0.00 4.17
2425 2559 2.091541 CCGGAAACATGGCAACTATGT 58.908 47.619 0.00 0.00 39.12 2.29
2426 2560 2.159393 CCGGAAACATGGCAACTATGTG 60.159 50.000 0.00 0.00 38.02 3.21
2427 2561 2.487762 CGGAAACATGGCAACTATGTGT 59.512 45.455 0.00 0.00 38.02 3.72
2428 2562 3.670359 CGGAAACATGGCAACTATGTGTG 60.670 47.826 0.00 0.00 38.02 3.82
2429 2563 3.255642 GGAAACATGGCAACTATGTGTGT 59.744 43.478 0.00 0.00 38.02 3.72
2430 2564 4.457603 GGAAACATGGCAACTATGTGTGTA 59.542 41.667 0.00 0.00 38.02 2.90
2431 2565 5.125417 GGAAACATGGCAACTATGTGTGTAT 59.875 40.000 0.00 0.00 38.02 2.29
2432 2566 5.818136 AACATGGCAACTATGTGTGTATC 57.182 39.130 0.00 0.00 38.02 2.24
2476 2610 4.903049 TCTAGTTCCCACTGTTTGGTTAGA 59.097 41.667 0.00 0.00 45.25 2.10
2483 2617 5.067273 CCCACTGTTTGGTTAGATACAACA 58.933 41.667 0.00 0.00 45.25 3.33
2510 2644 7.646922 GCTGCATGGAAATATTAAGAGTGAAAG 59.353 37.037 0.00 0.00 0.00 2.62
2530 2671 9.874215 GTGAAAGAATAAGGCGTAATTAATACC 57.126 33.333 0.00 0.00 0.00 2.73
2591 2732 8.166061 TCCAGTACCAGTCTAGAACTTTAGTTA 58.834 37.037 0.00 0.00 38.56 2.24
2592 2733 8.968969 CCAGTACCAGTCTAGAACTTTAGTTAT 58.031 37.037 0.00 0.00 38.56 1.89
2732 2883 2.249844 TTCCACGGAGGTTCAAACTC 57.750 50.000 0.00 0.00 39.02 3.01
2809 2960 5.574891 TCTTCTGACTAGTCAAGCTGATC 57.425 43.478 25.14 0.00 39.39 2.92
2987 3139 2.959707 GGTCAGAGAGATGGTATCCGTT 59.040 50.000 0.00 0.00 0.00 4.44
3070 3222 2.311463 TCTAGAGATGGGCGGAAAGAG 58.689 52.381 0.00 0.00 0.00 2.85
3095 3247 4.634004 CAGTTTCCTTACATGGTATGCGAA 59.366 41.667 0.00 0.00 0.00 4.70
3177 3329 9.136323 AGATTTGATGGAGATTTACCATTAACC 57.864 33.333 0.00 0.00 46.48 2.85
3246 3398 4.038883 TGTCACATTGGCATGATTTGTTCA 59.961 37.500 0.00 0.00 39.12 3.18
3295 3447 4.853924 TGCTCCCTTCTTTGAAATGAAC 57.146 40.909 0.00 0.00 0.00 3.18
3299 3451 5.354234 GCTCCCTTCTTTGAAATGAACGATA 59.646 40.000 0.00 0.00 0.00 2.92
3456 3608 1.768870 TGCATACCTTCCCTAGCCTTC 59.231 52.381 0.00 0.00 0.00 3.46
3471 3623 3.832527 AGCCTTCCAAGCTTGTTCTAAA 58.167 40.909 24.35 9.76 37.24 1.85
3588 3740 4.993584 CGAGGAGACCAGGATTGATTATTG 59.006 45.833 0.00 0.00 0.00 1.90
3605 3757 9.734620 TTGATTATTGTTAATTAGCATGCAGTC 57.265 29.630 21.98 1.20 0.00 3.51
4075 4238 6.013553 AGCTGAATATTCTACCATCAGAGCAT 60.014 38.462 16.24 2.22 39.85 3.79
4131 4295 8.190326 ACCAGTAGCATTAGTATAGCATTACA 57.810 34.615 0.00 0.00 0.00 2.41
4199 4363 3.118592 ACAGCCAGAACTCCTGTATAAGC 60.119 47.826 0.00 0.00 41.33 3.09
4386 4604 2.351738 CCTTTTCCAGGTTTGCATCGTC 60.352 50.000 0.00 0.00 37.99 4.20
4435 4653 5.560722 TTCTCCACATAACCTCTGTTTGA 57.439 39.130 0.00 0.00 35.87 2.69
4514 4737 1.805945 GTTCGAGAGCGCCGACATT 60.806 57.895 2.29 0.00 35.61 2.71
4617 4848 4.223700 TGCCATGTCTCTTCTCATGTAGTT 59.776 41.667 0.00 0.00 39.53 2.24
4725 4962 6.299141 TCTAAGAAACACTGAATTTGAGGCT 58.701 36.000 0.00 0.00 0.00 4.58
4756 4993 9.506018 AAAAGTGAAATAAAATCCAGAAATGGG 57.494 29.630 0.00 0.00 0.00 4.00
4761 4998 7.895429 TGAAATAAAATCCAGAAATGGGAGTCT 59.105 33.333 0.00 0.00 37.96 3.24
4762 4999 8.670521 AAATAAAATCCAGAAATGGGAGTCTT 57.329 30.769 0.00 0.00 37.96 3.01
4763 5000 5.990120 AAAATCCAGAAATGGGAGTCTTG 57.010 39.130 0.00 0.00 37.96 3.02
4844 7425 9.880064 TTTTTCGATACAACGATTACATTCAAA 57.120 25.926 0.00 0.00 41.82 2.69
4845 7426 9.880064 TTTTCGATACAACGATTACATTCAAAA 57.120 25.926 0.00 0.00 41.82 2.44
4846 7427 9.880064 TTTCGATACAACGATTACATTCAAAAA 57.120 25.926 0.00 0.00 41.82 1.94
4894 7476 5.404946 TGAGTAACACTAGCGTAACAATCC 58.595 41.667 0.00 0.00 0.00 3.01
4897 7479 6.461640 AGTAACACTAGCGTAACAATCCTTT 58.538 36.000 0.00 0.00 0.00 3.11
4995 7578 6.021596 CCAATAGTGACAAAATGTTAGCGTC 58.978 40.000 0.00 0.00 0.00 5.19
5097 7703 4.492604 GCCCAACAGCCTAACACA 57.507 55.556 0.00 0.00 0.00 3.72
5098 7704 2.727103 GCCCAACAGCCTAACACAA 58.273 52.632 0.00 0.00 0.00 3.33
5099 7705 1.036707 GCCCAACAGCCTAACACAAA 58.963 50.000 0.00 0.00 0.00 2.83
5100 7706 1.410882 GCCCAACAGCCTAACACAAAA 59.589 47.619 0.00 0.00 0.00 2.44
5101 7707 2.545742 GCCCAACAGCCTAACACAAAAG 60.546 50.000 0.00 0.00 0.00 2.27
5102 7708 2.693074 CCCAACAGCCTAACACAAAAGT 59.307 45.455 0.00 0.00 0.00 2.66
5103 7709 3.490761 CCCAACAGCCTAACACAAAAGTG 60.491 47.826 0.00 0.00 0.00 3.16
5104 7710 3.490761 CCAACAGCCTAACACAAAAGTGG 60.491 47.826 0.38 0.00 0.00 4.00
5192 7810 2.084546 GGAAACCAAATCCAGACCTCG 58.915 52.381 0.00 0.00 36.92 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.856135 AAATAACGTAAATCGGAAGGATCC 57.144 37.500 2.48 2.48 44.69 3.36
1 2 8.392612 TGAAAAATAACGTAAATCGGAAGGATC 58.607 33.333 0.00 0.00 44.69 3.36
2 3 8.271312 TGAAAAATAACGTAAATCGGAAGGAT 57.729 30.769 0.00 0.00 44.69 3.24
3 4 7.670009 TGAAAAATAACGTAAATCGGAAGGA 57.330 32.000 0.00 0.00 44.69 3.36
4 5 7.372396 CGATGAAAAATAACGTAAATCGGAAGG 59.628 37.037 0.00 0.00 44.69 3.46
5 6 8.241471 CGATGAAAAATAACGTAAATCGGAAG 57.759 34.615 0.00 0.00 44.69 3.46
8 9 6.946508 CCGATGAAAAATAACGTAAATCGG 57.053 37.500 6.39 6.39 46.32 4.18
9 10 5.111465 CGCCGATGAAAAATAACGTAAATCG 59.889 40.000 0.00 0.00 46.00 3.34
10 11 5.394322 CCGCCGATGAAAAATAACGTAAATC 59.606 40.000 0.00 0.00 0.00 2.17
11 12 5.267776 CCGCCGATGAAAAATAACGTAAAT 58.732 37.500 0.00 0.00 0.00 1.40
12 13 4.649977 CCGCCGATGAAAAATAACGTAAA 58.350 39.130 0.00 0.00 0.00 2.01
13 14 3.485546 GCCGCCGATGAAAAATAACGTAA 60.486 43.478 0.00 0.00 0.00 3.18
14 15 2.030701 GCCGCCGATGAAAAATAACGTA 59.969 45.455 0.00 0.00 0.00 3.57
15 16 1.202098 GCCGCCGATGAAAAATAACGT 60.202 47.619 0.00 0.00 0.00 3.99
16 17 1.462791 GCCGCCGATGAAAAATAACG 58.537 50.000 0.00 0.00 0.00 3.18
17 18 1.462791 CGCCGCCGATGAAAAATAAC 58.537 50.000 0.00 0.00 36.29 1.89
18 19 0.378962 CCGCCGCCGATGAAAAATAA 59.621 50.000 0.00 0.00 36.29 1.40
19 20 0.745128 ACCGCCGCCGATGAAAAATA 60.745 50.000 0.00 0.00 36.29 1.40
20 21 1.591504 AACCGCCGCCGATGAAAAAT 61.592 50.000 0.00 0.00 36.29 1.82
21 22 2.262303 AACCGCCGCCGATGAAAAA 61.262 52.632 0.00 0.00 36.29 1.94
22 23 2.670251 AACCGCCGCCGATGAAAA 60.670 55.556 0.00 0.00 36.29 2.29
23 24 3.427425 CAACCGCCGCCGATGAAA 61.427 61.111 0.00 0.00 36.29 2.69
31 32 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
32 33 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
33 34 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
34 35 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
35 36 2.113139 ACCCCAGAACAGCAACCG 59.887 61.111 0.00 0.00 0.00 4.44
36 37 2.564721 GCACCCCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
37 38 1.529244 AGCACCCCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
38 39 1.529010 CAGCACCCCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
39 40 2.113774 CAGCACCCCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
40 41 2.674380 CCAGCACCCCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
41 42 1.302832 GACCAGCACCCCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
42 43 2.829384 GGACCAGCACCCCAGAACA 61.829 63.158 0.00 0.00 0.00 3.18
43 44 1.198759 TAGGACCAGCACCCCAGAAC 61.199 60.000 0.00 0.00 0.00 3.01
44 45 0.253160 ATAGGACCAGCACCCCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
45 46 0.982852 CATAGGACCAGCACCCCAGA 60.983 60.000 0.00 0.00 0.00 3.86
46 47 0.982852 TCATAGGACCAGCACCCCAG 60.983 60.000 0.00 0.00 0.00 4.45
47 48 0.982852 CTCATAGGACCAGCACCCCA 60.983 60.000 0.00 0.00 0.00 4.96
48 49 1.700042 CCTCATAGGACCAGCACCCC 61.700 65.000 0.00 0.00 37.67 4.95
49 50 1.832912 CCTCATAGGACCAGCACCC 59.167 63.158 0.00 0.00 37.67 4.61
50 51 1.147153 GCCTCATAGGACCAGCACC 59.853 63.158 0.00 0.00 37.67 5.01
51 52 1.147153 GGCCTCATAGGACCAGCAC 59.853 63.158 0.00 0.00 37.46 4.40
52 53 3.647367 GGCCTCATAGGACCAGCA 58.353 61.111 0.00 0.00 37.46 4.41
57 58 1.269831 CGTGCTAAGGCCTCATAGGAC 60.270 57.143 20.66 20.66 46.64 3.85
58 59 1.040646 CGTGCTAAGGCCTCATAGGA 58.959 55.000 5.23 3.07 37.67 2.94
59 60 1.040646 TCGTGCTAAGGCCTCATAGG 58.959 55.000 5.23 0.00 38.80 2.57
60 61 1.600663 CGTCGTGCTAAGGCCTCATAG 60.601 57.143 5.23 6.39 37.74 2.23
61 62 0.384309 CGTCGTGCTAAGGCCTCATA 59.616 55.000 5.23 0.00 37.74 2.15
62 63 1.141881 CGTCGTGCTAAGGCCTCAT 59.858 57.895 5.23 0.00 37.74 2.90
63 64 1.974875 TCGTCGTGCTAAGGCCTCA 60.975 57.895 5.23 0.00 37.74 3.86
64 65 1.516603 GTCGTCGTGCTAAGGCCTC 60.517 63.158 5.23 0.00 37.74 4.70
65 66 1.533469 AAGTCGTCGTGCTAAGGCCT 61.533 55.000 0.00 0.00 37.74 5.19
66 67 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
67 68 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
68 69 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
69 70 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
70 71 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
71 72 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
72 73 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
73 74 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
74 75 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
75 76 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
76 77 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
77 78 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
78 79 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
79 80 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
80 81 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
81 82 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
82 83 4.985538 ATTGTAGTAGACAGTCGGGAAG 57.014 45.455 0.00 0.00 39.88 3.46
83 84 5.948162 ACTTATTGTAGTAGACAGTCGGGAA 59.052 40.000 0.00 0.00 39.88 3.97
84 85 5.503927 ACTTATTGTAGTAGACAGTCGGGA 58.496 41.667 0.00 0.00 39.88 5.14
85 86 5.831702 ACTTATTGTAGTAGACAGTCGGG 57.168 43.478 0.00 0.00 39.88 5.14
100 101 2.159707 CGAAGCCGGTCACAACTTATTG 60.160 50.000 1.90 0.00 41.98 1.90
101 102 2.073816 CGAAGCCGGTCACAACTTATT 58.926 47.619 1.90 0.00 0.00 1.40
102 103 1.722011 CGAAGCCGGTCACAACTTAT 58.278 50.000 1.90 0.00 0.00 1.73
103 104 3.204505 CGAAGCCGGTCACAACTTA 57.795 52.632 1.90 0.00 0.00 2.24
104 105 4.043168 CGAAGCCGGTCACAACTT 57.957 55.556 1.90 0.00 0.00 2.66
115 116 4.918201 CCCTCCATCGCCGAAGCC 62.918 72.222 0.00 0.00 34.57 4.35
116 117 4.918201 CCCCTCCATCGCCGAAGC 62.918 72.222 0.00 0.00 0.00 3.86
117 118 4.918201 GCCCCTCCATCGCCGAAG 62.918 72.222 0.00 0.00 0.00 3.79
121 122 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
122 123 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
123 124 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
124 125 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
125 126 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
151 152 3.181967 CACCGAAGCGAGCCGAAG 61.182 66.667 0.00 0.00 0.00 3.79
155 156 3.793144 CAAGCACCGAAGCGAGCC 61.793 66.667 0.00 0.00 40.15 4.70
156 157 1.687494 CTACAAGCACCGAAGCGAGC 61.687 60.000 0.00 0.00 40.15 5.03
157 158 0.388649 ACTACAAGCACCGAAGCGAG 60.389 55.000 0.00 0.00 40.15 5.03
158 159 0.388134 GACTACAAGCACCGAAGCGA 60.388 55.000 0.00 0.00 40.15 4.93
159 160 1.674611 CGACTACAAGCACCGAAGCG 61.675 60.000 0.00 0.00 40.15 4.68
160 161 1.956620 GCGACTACAAGCACCGAAGC 61.957 60.000 0.00 0.00 0.00 3.86
161 162 1.352156 GGCGACTACAAGCACCGAAG 61.352 60.000 0.00 0.00 34.54 3.79
162 163 1.373748 GGCGACTACAAGCACCGAA 60.374 57.895 0.00 0.00 34.54 4.30
163 164 2.260434 GGCGACTACAAGCACCGA 59.740 61.111 0.00 0.00 34.54 4.69
164 165 2.813908 GGGCGACTACAAGCACCG 60.814 66.667 0.00 0.00 34.54 4.94
166 167 0.179108 CTAGGGGCGACTACAAGCAC 60.179 60.000 0.00 0.00 35.73 4.40
167 168 1.327690 CCTAGGGGCGACTACAAGCA 61.328 60.000 0.00 0.00 34.54 3.91
168 169 1.328430 ACCTAGGGGCGACTACAAGC 61.328 60.000 14.81 0.00 35.63 4.01
169 170 0.460311 CACCTAGGGGCGACTACAAG 59.540 60.000 14.81 0.00 35.63 3.16
170 171 0.974010 CCACCTAGGGGCGACTACAA 60.974 60.000 14.81 0.00 35.63 2.41
171 172 1.380785 CCACCTAGGGGCGACTACA 60.381 63.158 14.81 0.00 35.63 2.74
172 173 1.380920 ACCACCTAGGGGCGACTAC 60.381 63.158 14.81 0.00 43.89 2.73
173 174 1.076485 GACCACCTAGGGGCGACTA 60.076 63.158 14.81 0.00 43.89 2.59
174 175 1.578215 TAGACCACCTAGGGGCGACT 61.578 60.000 14.81 11.17 42.52 4.18
175 176 1.076485 TAGACCACCTAGGGGCGAC 60.076 63.158 14.81 3.84 42.52 5.19
176 177 1.076485 GTAGACCACCTAGGGGCGA 60.076 63.158 14.81 2.29 42.52 5.54
177 178 2.487532 CGTAGACCACCTAGGGGCG 61.488 68.421 14.81 3.38 42.52 6.13
178 179 2.132352 CCGTAGACCACCTAGGGGC 61.132 68.421 14.81 7.93 45.28 5.80
179 180 4.272245 CCGTAGACCACCTAGGGG 57.728 66.667 14.81 9.46 45.28 4.79
181 182 2.231529 CAGATCCGTAGACCACCTAGG 58.768 57.143 7.41 7.41 45.67 3.02
182 183 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
183 184 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
184 185 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
185 186 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
186 187 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
187 188 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
188 189 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
189 190 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
193 194 9.408648 AGAAATAAAAATTACATCCAGATCCGT 57.591 29.630 0.00 0.00 0.00 4.69
194 195 9.669353 CAGAAATAAAAATTACATCCAGATCCG 57.331 33.333 0.00 0.00 0.00 4.18
209 210 9.710979 CAGTACAACGAACTTCAGAAATAAAAA 57.289 29.630 0.00 0.00 0.00 1.94
210 211 7.853929 GCAGTACAACGAACTTCAGAAATAAAA 59.146 33.333 0.00 0.00 0.00 1.52
211 212 7.349711 GCAGTACAACGAACTTCAGAAATAAA 58.650 34.615 0.00 0.00 0.00 1.40
212 213 6.073440 GGCAGTACAACGAACTTCAGAAATAA 60.073 38.462 0.00 0.00 0.00 1.40
213 214 5.407387 GGCAGTACAACGAACTTCAGAAATA 59.593 40.000 0.00 0.00 0.00 1.40
214 215 4.213482 GGCAGTACAACGAACTTCAGAAAT 59.787 41.667 0.00 0.00 0.00 2.17
215 216 3.558418 GGCAGTACAACGAACTTCAGAAA 59.442 43.478 0.00 0.00 0.00 2.52
216 217 3.128349 GGCAGTACAACGAACTTCAGAA 58.872 45.455 0.00 0.00 0.00 3.02
217 218 2.101750 TGGCAGTACAACGAACTTCAGA 59.898 45.455 0.00 0.00 0.00 3.27
218 219 2.221055 GTGGCAGTACAACGAACTTCAG 59.779 50.000 0.00 0.00 0.00 3.02
219 220 2.206750 GTGGCAGTACAACGAACTTCA 58.793 47.619 0.00 0.00 0.00 3.02
220 221 1.191647 CGTGGCAGTACAACGAACTTC 59.808 52.381 0.00 0.00 0.00 3.01
221 222 1.202440 TCGTGGCAGTACAACGAACTT 60.202 47.619 9.66 0.00 0.00 2.66
222 223 0.386476 TCGTGGCAGTACAACGAACT 59.614 50.000 9.66 0.00 0.00 3.01
223 224 1.425412 ATCGTGGCAGTACAACGAAC 58.575 50.000 14.25 0.00 36.41 3.95
224 225 1.795872 CAATCGTGGCAGTACAACGAA 59.204 47.619 14.25 2.78 36.41 3.85
225 226 1.424403 CAATCGTGGCAGTACAACGA 58.576 50.000 13.12 13.12 37.24 3.85
226 227 0.442310 CCAATCGTGGCAGTACAACG 59.558 55.000 0.00 0.00 38.35 4.10
227 228 1.732259 CTCCAATCGTGGCAGTACAAC 59.268 52.381 0.00 0.00 45.54 3.32
228 229 1.621317 TCTCCAATCGTGGCAGTACAA 59.379 47.619 0.00 0.00 45.54 2.41
229 230 1.262417 TCTCCAATCGTGGCAGTACA 58.738 50.000 0.00 0.00 45.54 2.90
230 231 2.159099 TCATCTCCAATCGTGGCAGTAC 60.159 50.000 0.00 0.00 45.54 2.73
231 232 2.107366 TCATCTCCAATCGTGGCAGTA 58.893 47.619 0.00 0.00 45.54 2.74
232 233 0.904649 TCATCTCCAATCGTGGCAGT 59.095 50.000 0.00 0.00 45.54 4.40
233 234 2.028420 TTCATCTCCAATCGTGGCAG 57.972 50.000 0.00 0.00 45.54 4.85
234 235 2.715749 ATTCATCTCCAATCGTGGCA 57.284 45.000 0.00 0.00 45.54 4.92
235 236 3.995199 TCTATTCATCTCCAATCGTGGC 58.005 45.455 0.00 0.00 45.54 5.01
237 238 7.719778 TTCAATCTATTCATCTCCAATCGTG 57.280 36.000 0.00 0.00 0.00 4.35
238 239 7.989741 ACTTTCAATCTATTCATCTCCAATCGT 59.010 33.333 0.00 0.00 0.00 3.73
239 240 8.375608 ACTTTCAATCTATTCATCTCCAATCG 57.624 34.615 0.00 0.00 0.00 3.34
244 245 9.794685 GGAAAAACTTTCAATCTATTCATCTCC 57.205 33.333 1.88 0.00 0.00 3.71
245 246 9.495754 CGGAAAAACTTTCAATCTATTCATCTC 57.504 33.333 1.88 0.00 0.00 2.75
246 247 9.014297 ACGGAAAAACTTTCAATCTATTCATCT 57.986 29.630 1.88 0.00 0.00 2.90
298 299 9.821662 GTCCATAGTTGTTTGTTCTTATACAAC 57.178 33.333 0.00 0.00 46.56 3.32
299 300 9.562408 TGTCCATAGTTGTTTGTTCTTATACAA 57.438 29.630 0.00 0.00 36.30 2.41
300 301 9.562408 TTGTCCATAGTTGTTTGTTCTTATACA 57.438 29.630 0.00 0.00 0.00 2.29
303 304 8.918202 TCTTGTCCATAGTTGTTTGTTCTTAT 57.082 30.769 0.00 0.00 0.00 1.73
304 305 8.740123 TTCTTGTCCATAGTTGTTTGTTCTTA 57.260 30.769 0.00 0.00 0.00 2.10
305 306 7.639113 TTCTTGTCCATAGTTGTTTGTTCTT 57.361 32.000 0.00 0.00 0.00 2.52
306 307 7.639113 TTTCTTGTCCATAGTTGTTTGTTCT 57.361 32.000 0.00 0.00 0.00 3.01
307 308 7.920682 ACATTTCTTGTCCATAGTTGTTTGTTC 59.079 33.333 0.00 0.00 30.89 3.18
308 309 7.781056 ACATTTCTTGTCCATAGTTGTTTGTT 58.219 30.769 0.00 0.00 30.89 2.83
309 310 7.346751 ACATTTCTTGTCCATAGTTGTTTGT 57.653 32.000 0.00 0.00 30.89 2.83
310 311 8.567948 AGTACATTTCTTGTCCATAGTTGTTTG 58.432 33.333 0.00 0.00 39.87 2.93
311 312 8.691661 AGTACATTTCTTGTCCATAGTTGTTT 57.308 30.769 0.00 0.00 39.87 2.83
312 313 7.390718 GGAGTACATTTCTTGTCCATAGTTGTT 59.609 37.037 0.00 0.00 39.87 2.83
313 314 6.879458 GGAGTACATTTCTTGTCCATAGTTGT 59.121 38.462 0.00 0.00 39.87 3.32
314 315 6.316390 GGGAGTACATTTCTTGTCCATAGTTG 59.684 42.308 0.00 0.00 39.87 3.16
315 316 6.215636 AGGGAGTACATTTCTTGTCCATAGTT 59.784 38.462 0.00 0.00 39.87 2.24
316 317 5.726793 AGGGAGTACATTTCTTGTCCATAGT 59.273 40.000 0.00 0.00 39.87 2.12
317 318 6.240549 AGGGAGTACATTTCTTGTCCATAG 57.759 41.667 0.00 0.00 39.87 2.23
318 319 5.130477 GGAGGGAGTACATTTCTTGTCCATA 59.870 44.000 0.00 0.00 39.87 2.74
319 320 4.080299 GGAGGGAGTACATTTCTTGTCCAT 60.080 45.833 0.00 0.00 39.87 3.41
320 321 3.263425 GGAGGGAGTACATTTCTTGTCCA 59.737 47.826 0.00 0.00 39.87 4.02
321 322 3.679083 CGGAGGGAGTACATTTCTTGTCC 60.679 52.174 0.00 0.00 39.87 4.02
322 323 3.056035 ACGGAGGGAGTACATTTCTTGTC 60.056 47.826 0.00 0.00 39.87 3.18
323 324 2.904434 ACGGAGGGAGTACATTTCTTGT 59.096 45.455 0.00 0.00 42.62 3.16
324 325 3.522553 GACGGAGGGAGTACATTTCTTG 58.477 50.000 0.00 0.00 0.00 3.02
325 326 2.500504 GGACGGAGGGAGTACATTTCTT 59.499 50.000 0.00 0.00 0.00 2.52
326 327 2.108970 GGACGGAGGGAGTACATTTCT 58.891 52.381 0.00 0.00 0.00 2.52
327 328 1.138464 GGGACGGAGGGAGTACATTTC 59.862 57.143 0.00 0.00 0.00 2.17
328 329 1.201424 GGGACGGAGGGAGTACATTT 58.799 55.000 0.00 0.00 0.00 2.32
329 330 0.042131 TGGGACGGAGGGAGTACATT 59.958 55.000 0.00 0.00 0.00 2.71
330 331 0.264955 ATGGGACGGAGGGAGTACAT 59.735 55.000 0.00 0.00 0.00 2.29
331 332 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
332 333 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
333 334 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
334 335 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
335 336 3.961408 CCTATATTATGGGACGGAGGGAG 59.039 52.174 0.00 0.00 31.57 4.30
336 337 3.599240 TCCTATATTATGGGACGGAGGGA 59.401 47.826 4.74 0.00 34.71 4.20
337 338 3.990369 TCCTATATTATGGGACGGAGGG 58.010 50.000 4.74 0.00 34.71 4.30
385 386 8.936864 CCTTCGTCTCATAATGTAAGACTTTTT 58.063 33.333 0.00 0.00 37.79 1.94
386 387 7.549488 CCCTTCGTCTCATAATGTAAGACTTTT 59.451 37.037 0.00 0.00 37.79 2.27
387 388 7.042335 CCCTTCGTCTCATAATGTAAGACTTT 58.958 38.462 0.00 0.00 37.79 2.66
388 389 6.380274 TCCCTTCGTCTCATAATGTAAGACTT 59.620 38.462 0.00 0.00 37.79 3.01
389 390 5.892119 TCCCTTCGTCTCATAATGTAAGACT 59.108 40.000 0.00 0.00 37.79 3.24
390 391 6.145338 TCCCTTCGTCTCATAATGTAAGAC 57.855 41.667 0.00 0.00 36.82 3.01
391 392 5.892119 ACTCCCTTCGTCTCATAATGTAAGA 59.108 40.000 0.00 0.00 0.00 2.10
392 393 6.150396 ACTCCCTTCGTCTCATAATGTAAG 57.850 41.667 0.00 0.00 0.00 2.34
393 394 6.604396 TGTACTCCCTTCGTCTCATAATGTAA 59.396 38.462 0.00 0.00 0.00 2.41
394 395 6.124340 TGTACTCCCTTCGTCTCATAATGTA 58.876 40.000 0.00 0.00 0.00 2.29
395 396 4.954202 TGTACTCCCTTCGTCTCATAATGT 59.046 41.667 0.00 0.00 0.00 2.71
396 397 5.515797 TGTACTCCCTTCGTCTCATAATG 57.484 43.478 0.00 0.00 0.00 1.90
397 398 5.892119 TCTTGTACTCCCTTCGTCTCATAAT 59.108 40.000 0.00 0.00 0.00 1.28
398 399 5.125097 GTCTTGTACTCCCTTCGTCTCATAA 59.875 44.000 0.00 0.00 0.00 1.90
399 400 4.639310 GTCTTGTACTCCCTTCGTCTCATA 59.361 45.833 0.00 0.00 0.00 2.15
400 401 3.444388 GTCTTGTACTCCCTTCGTCTCAT 59.556 47.826 0.00 0.00 0.00 2.90
401 402 2.818432 GTCTTGTACTCCCTTCGTCTCA 59.182 50.000 0.00 0.00 0.00 3.27
402 403 2.818432 TGTCTTGTACTCCCTTCGTCTC 59.182 50.000 0.00 0.00 0.00 3.36
403 404 2.872732 TGTCTTGTACTCCCTTCGTCT 58.127 47.619 0.00 0.00 0.00 4.18
404 405 3.243636 TGTTGTCTTGTACTCCCTTCGTC 60.244 47.826 0.00 0.00 0.00 4.20
405 406 2.696707 TGTTGTCTTGTACTCCCTTCGT 59.303 45.455 0.00 0.00 0.00 3.85
406 407 3.380479 TGTTGTCTTGTACTCCCTTCG 57.620 47.619 0.00 0.00 0.00 3.79
407 408 4.879545 TGTTTGTTGTCTTGTACTCCCTTC 59.120 41.667 0.00 0.00 0.00 3.46
408 409 4.850680 TGTTTGTTGTCTTGTACTCCCTT 58.149 39.130 0.00 0.00 0.00 3.95
409 410 4.497291 TGTTTGTTGTCTTGTACTCCCT 57.503 40.909 0.00 0.00 0.00 4.20
410 411 5.767816 AATGTTTGTTGTCTTGTACTCCC 57.232 39.130 0.00 0.00 0.00 4.30
459 460 3.253188 CAGGTTATCAACAACACCAGTGG 59.747 47.826 7.91 7.91 34.19 4.00
491 492 9.184523 CAAGATTTGTTATTCTTGGGGTATGTA 57.815 33.333 5.05 0.00 43.23 2.29
493 494 6.980397 GCAAGATTTGTTATTCTTGGGGTATG 59.020 38.462 12.94 0.00 45.74 2.39
495 496 6.252995 AGCAAGATTTGTTATTCTTGGGGTA 58.747 36.000 12.94 0.00 45.74 3.69
497 498 5.665916 AGCAAGATTTGTTATTCTTGGGG 57.334 39.130 12.94 0.00 45.74 4.96
498 499 9.143631 CTTAAAGCAAGATTTGTTATTCTTGGG 57.856 33.333 12.94 0.00 45.74 4.12
499 500 9.912634 TCTTAAAGCAAGATTTGTTATTCTTGG 57.087 29.630 12.94 0.00 45.74 3.61
514 515 6.507023 ACAAGAAACACCATCTTAAAGCAAG 58.493 36.000 0.00 0.00 35.43 4.01
523 524 3.576982 TCGTCCTACAAGAAACACCATCT 59.423 43.478 0.00 0.00 0.00 2.90
545 546 3.668447 TGATTTTCTTCTTGCTCGCTCT 58.332 40.909 0.00 0.00 0.00 4.09
550 551 9.696917 TCCTTTATTTTGATTTTCTTCTTGCTC 57.303 29.630 0.00 0.00 0.00 4.26
648 670 0.935831 CGCGTAACTGTTCGTGTGGA 60.936 55.000 0.00 0.00 33.73 4.02
654 676 0.386352 TGGAGTCGCGTAACTGTTCG 60.386 55.000 5.77 2.27 0.00 3.95
674 696 2.798499 CGAAGCCGTATACCTGTCCTTG 60.798 54.545 0.00 0.00 0.00 3.61
705 727 6.832520 AATTTGGTATCTGTGTGTAATGCA 57.167 33.333 0.00 0.00 0.00 3.96
921 980 2.029964 GGTTGTCCGCACGGAGAA 59.970 61.111 16.71 16.71 46.16 2.87
938 997 1.878656 GAGTGGACGAGTGGAGTGGG 61.879 65.000 0.00 0.00 0.00 4.61
963 1026 0.178921 AGTGGGAGTGAGAAGCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
1087 1151 1.354040 CTGTGAGTGAACGATCCTGC 58.646 55.000 0.00 0.00 0.00 4.85
1310 1380 5.508200 TTGGCACGGTATATTCCAATTTC 57.492 39.130 0.00 0.00 32.42 2.17
1388 1458 9.458374 TTCAAATTGGAGAGAAACGTTAAATTC 57.542 29.630 0.00 0.00 0.00 2.17
1437 1507 8.902540 TGAAACATAGTACATAATTGGCTAGG 57.097 34.615 0.00 0.00 0.00 3.02
1569 1639 5.105432 TGAAATTGCTAGGCATATGCACAAA 60.105 36.000 28.07 14.74 44.36 2.83
1608 1678 3.861113 CACATTGCAGGCACATACAAATC 59.139 43.478 0.00 0.00 0.00 2.17
1655 1725 3.898517 TCTGGTGATATCTCGTTAGCG 57.101 47.619 3.98 0.00 39.92 4.26
1704 1774 4.453480 AAAACTGTGGGAATCAGAGGAA 57.547 40.909 0.00 0.00 40.69 3.36
1867 1938 0.249489 CTGGGTCGATGAATCCGGAC 60.249 60.000 6.12 0.00 0.00 4.79
1885 1956 3.763897 CCCTCGTTCCCAAATTTGATTCT 59.236 43.478 19.86 0.00 0.00 2.40
1892 1963 0.688487 TCGACCCTCGTTCCCAAATT 59.312 50.000 0.00 0.00 41.35 1.82
1956 2027 0.527817 GTCGCCGAACCTGAATCGAT 60.528 55.000 0.00 0.00 42.76 3.59
2000 2071 2.806244 GCTGACCTTTTGCTTACTCGAA 59.194 45.455 0.00 0.00 0.00 3.71
2035 2106 3.442977 GGCAGAGAGTAAAACGAGGAGTA 59.557 47.826 0.00 0.00 0.00 2.59
2149 2220 9.613428 ATCGTTGATCCATGAAGACTAAAATAA 57.387 29.630 0.00 0.00 0.00 1.40
2166 2237 1.089920 AACTGGCTGCATCGTTGATC 58.910 50.000 0.50 0.00 0.00 2.92
2170 2241 2.956987 GCAACTGGCTGCATCGTT 59.043 55.556 0.50 0.00 42.17 3.85
2210 2281 3.970410 TTGGGACTGGCTGGGCTG 61.970 66.667 0.00 0.02 0.00 4.85
2212 2283 2.543067 CTAGTTGGGACTGGCTGGGC 62.543 65.000 0.00 0.00 36.60 5.36
2223 2313 5.350640 GGAACGTGAATCTTTACTAGTTGGG 59.649 44.000 0.00 0.00 0.00 4.12
2226 2316 6.091437 CGAGGAACGTGAATCTTTACTAGTT 58.909 40.000 0.00 0.00 37.22 2.24
2227 2317 5.638783 CGAGGAACGTGAATCTTTACTAGT 58.361 41.667 0.00 0.00 37.22 2.57
2293 2427 5.427036 TTTTCTAAAGCGGAAACACGATT 57.573 34.783 0.00 0.00 45.13 3.34
2425 2559 1.357137 TCACCTTGGCCAGATACACA 58.643 50.000 5.11 0.00 0.00 3.72
2426 2560 2.084546 GTTCACCTTGGCCAGATACAC 58.915 52.381 5.11 0.00 0.00 2.90
2427 2561 1.985159 AGTTCACCTTGGCCAGATACA 59.015 47.619 5.11 0.00 0.00 2.29
2428 2562 2.633488 GAGTTCACCTTGGCCAGATAC 58.367 52.381 5.11 0.00 0.00 2.24
2429 2563 1.559682 GGAGTTCACCTTGGCCAGATA 59.440 52.381 5.11 0.00 0.00 1.98
2430 2564 0.329596 GGAGTTCACCTTGGCCAGAT 59.670 55.000 5.11 0.00 0.00 2.90
2431 2565 0.768221 AGGAGTTCACCTTGGCCAGA 60.768 55.000 5.11 0.00 36.86 3.86
2432 2566 0.111253 AAGGAGTTCACCTTGGCCAG 59.889 55.000 5.11 0.00 46.85 4.85
2476 2610 6.720112 AATATTTCCATGCAGCTGTTGTAT 57.280 33.333 16.64 8.88 31.71 2.29
2483 2617 6.359804 TCACTCTTAATATTTCCATGCAGCT 58.640 36.000 0.00 0.00 0.00 4.24
2530 2671 8.423973 CACAATGGTTGTTTACGTCAAATAATG 58.576 33.333 0.00 0.00 43.23 1.90
2732 2883 5.569059 GCAATTAGAAACATGAAGGACAACG 59.431 40.000 0.00 0.00 0.00 4.10
2809 2960 8.610896 TGCACAAACAATTGAAGGAATAAAAAG 58.389 29.630 13.59 0.00 38.94 2.27
2963 3115 3.571590 GGATACCATCTCTCTGACCTGT 58.428 50.000 0.00 0.00 0.00 4.00
2987 3139 9.793259 GGATAATATAAAACATCAAGGTCCAGA 57.207 33.333 0.00 0.00 0.00 3.86
3011 3163 0.328258 GGCTGCCTTTAGGACAAGGA 59.672 55.000 12.43 0.00 45.79 3.36
3041 3193 2.422093 GCCCATCTCTAGAACCTTTGGG 60.422 54.545 15.69 15.69 40.59 4.12
3070 3222 4.034048 CGCATACCATGTAAGGAAACTGTC 59.966 45.833 0.00 0.00 42.68 3.51
3095 3247 5.511202 GGAAACCACAACCATCAATGATGTT 60.511 40.000 20.39 12.35 38.28 2.71
3145 3297 9.618890 TGGTAAATCTCCATCAAATCTCTAAAG 57.381 33.333 0.00 0.00 0.00 1.85
3177 3329 9.630098 AATAAAAAGTTCAGCAACATGAGTATG 57.370 29.630 0.00 0.00 40.24 2.39
3456 3608 4.937201 AAAGGGTTTAGAACAAGCTTGG 57.063 40.909 29.18 12.28 0.00 3.61
3471 3623 5.046950 TGAAAAACAAGTGCAAGTAAAGGGT 60.047 36.000 0.00 0.00 0.00 4.34
3568 3720 8.697507 ATTAACAATAATCAATCCTGGTCTCC 57.302 34.615 0.00 0.00 0.00 3.71
3588 3740 3.354397 GCACGACTGCATGCTAATTAAC 58.646 45.455 20.33 0.00 43.62 2.01
3605 3757 0.865769 AAAGTTACGCAAGAGGCACG 59.134 50.000 0.00 0.00 45.17 5.34
4199 4363 2.470196 TTTAGCTGCTACGCTAGTCG 57.530 50.000 9.27 5.24 42.85 4.18
4386 4604 1.333524 CCAGCAGAAGCATAAATCGCG 60.334 52.381 0.00 0.00 45.49 5.87
4435 4653 5.585047 GCCTGTCAAGACGGTAAGATTAAAT 59.415 40.000 8.14 0.00 35.97 1.40
4514 4737 3.708451 TGTTGCCCTCAGATACTCTACA 58.292 45.455 0.00 0.00 0.00 2.74
4617 4848 9.177608 CCATTTTCCTAGTAAAGAATGTGATCA 57.822 33.333 0.00 0.00 0.00 2.92
4756 4993 4.495844 CCCGTGAAAGAAACAACAAGACTC 60.496 45.833 0.00 0.00 0.00 3.36
4761 4998 3.697045 ACATCCCGTGAAAGAAACAACAA 59.303 39.130 0.00 0.00 0.00 2.83
4762 4999 3.283751 ACATCCCGTGAAAGAAACAACA 58.716 40.909 0.00 0.00 0.00 3.33
4763 5000 3.982576 ACATCCCGTGAAAGAAACAAC 57.017 42.857 0.00 0.00 0.00 3.32
4902 7484 8.339714 CAAGGTTCTAATTGTTACGTTCAAAGA 58.660 33.333 0.00 0.00 0.00 2.52
4903 7485 8.339714 TCAAGGTTCTAATTGTTACGTTCAAAG 58.660 33.333 0.00 0.00 0.00 2.77
4919 7501 3.954904 CTCGAGGGAATCTCAAGGTTCTA 59.045 47.826 3.91 0.00 42.55 2.10
4970 7553 5.703592 ACGCTAACATTTTGTCACTATTGGA 59.296 36.000 0.00 0.00 0.00 3.53
4995 7578 4.748144 GTTGGGAGCTGGGCTGGG 62.748 72.222 0.00 0.00 39.88 4.45
5041 7647 0.392461 TTTGGATGTAGTGGGCTCGC 60.392 55.000 0.00 0.00 0.00 5.03
5042 7648 2.009774 CTTTTGGATGTAGTGGGCTCG 58.990 52.381 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.