Multiple sequence alignment - TraesCS7D01G278100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G278100 chr7D 100.000 3828 0 0 1 3828 267874138 267877965 0.000000e+00 7070.0
1 TraesCS7D01G278100 chr7B 95.143 2553 72 20 710 3235 247702095 247704622 0.000000e+00 3980.0
2 TraesCS7D01G278100 chr7B 94.868 604 21 5 3235 3828 247704664 247705267 0.000000e+00 935.0
3 TraesCS7D01G278100 chr7A 95.265 1943 51 11 742 2643 293100904 293098962 0.000000e+00 3040.0
4 TraesCS7D01G278100 chr7A 96.471 595 19 2 3235 3828 293098247 293097654 0.000000e+00 981.0
5 TraesCS7D01G278100 chr7A 96.303 595 20 2 2641 3235 293098881 293098289 0.000000e+00 976.0
6 TraesCS7D01G278100 chr2B 92.157 51 4 0 441 491 679895433 679895483 5.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G278100 chr7D 267874138 267877965 3827 False 7070.000000 7070 100.0000 1 3828 1 chr7D.!!$F1 3827
1 TraesCS7D01G278100 chr7B 247702095 247705267 3172 False 2457.500000 3980 95.0055 710 3828 2 chr7B.!!$F1 3118
2 TraesCS7D01G278100 chr7A 293097654 293100904 3250 True 1665.666667 3040 96.0130 742 3828 3 chr7A.!!$R1 3086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 615 0.030235 AAAAGAAAACGGCAGGACGC 59.970 50.000 0.00 0.0 41.28 5.19 F
690 691 0.034670 AGATGACCCTTGCAGGCTTC 60.035 55.000 0.00 0.0 32.73 3.86 F
703 704 0.107945 AGGCTTCCGAATGAGCACTC 60.108 55.000 0.00 0.0 0.00 3.51 F
705 706 0.737715 GCTTCCGAATGAGCACTCGT 60.738 55.000 0.66 0.0 33.17 4.18 F
2185 2232 1.700739 TCACCTTGACGGGGTTGTATT 59.299 47.619 0.00 0.0 37.50 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 1976 1.673920 TGATATGCACTCACGTAGCGA 59.326 47.619 0.00 0.0 0.00 4.93 R
2326 2388 3.135994 GTTTACGTTCAGAAGCCTTCCA 58.864 45.455 0.00 0.0 0.00 3.53 R
2691 2837 6.478512 TTGCCATACACACTATGATAGTCA 57.521 37.500 1.33 0.0 36.76 3.41 R
2812 2958 1.078848 GCATCAGAACCCTCGCTGT 60.079 57.895 0.00 0.0 33.90 4.40 R
3368 3557 1.070105 TCGCTGTAAAACGCTGGGT 59.930 52.632 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.956797 GTGAATAATTTTTGAATTGGATGAACG 57.043 29.630 0.00 0.00 0.00 3.95
34 35 9.149225 TGAATAATTTTTGAATTGGATGAACGG 57.851 29.630 0.00 0.00 0.00 4.44
35 36 9.364989 GAATAATTTTTGAATTGGATGAACGGA 57.635 29.630 0.00 0.00 0.00 4.69
36 37 9.889128 AATAATTTTTGAATTGGATGAACGGAT 57.111 25.926 0.00 0.00 0.00 4.18
37 38 9.889128 ATAATTTTTGAATTGGATGAACGGATT 57.111 25.926 0.00 0.00 0.00 3.01
38 39 7.832503 ATTTTTGAATTGGATGAACGGATTC 57.167 32.000 0.00 0.00 35.18 2.52
39 40 6.588719 TTTTGAATTGGATGAACGGATTCT 57.411 33.333 0.00 0.00 35.69 2.40
40 41 5.565592 TTGAATTGGATGAACGGATTCTG 57.434 39.130 0.00 0.00 35.69 3.02
41 42 4.842574 TGAATTGGATGAACGGATTCTGA 58.157 39.130 0.00 0.00 35.69 3.27
42 43 5.252547 TGAATTGGATGAACGGATTCTGAA 58.747 37.500 0.00 0.00 35.69 3.02
43 44 5.887598 TGAATTGGATGAACGGATTCTGAAT 59.112 36.000 1.81 1.81 35.69 2.57
44 45 6.377996 TGAATTGGATGAACGGATTCTGAATT 59.622 34.615 4.11 0.00 35.69 2.17
45 46 5.818136 TTGGATGAACGGATTCTGAATTC 57.182 39.130 4.11 1.05 35.69 2.17
46 47 4.842574 TGGATGAACGGATTCTGAATTCA 58.157 39.130 8.12 8.12 35.69 2.57
47 48 5.439721 TGGATGAACGGATTCTGAATTCAT 58.560 37.500 8.96 13.81 41.51 2.57
48 49 5.297527 TGGATGAACGGATTCTGAATTCATG 59.702 40.000 17.17 3.70 39.49 3.07
49 50 5.528690 GGATGAACGGATTCTGAATTCATGA 59.471 40.000 17.17 6.08 39.49 3.07
50 51 6.038603 GGATGAACGGATTCTGAATTCATGAA 59.961 38.462 17.17 11.26 39.49 2.57
51 52 6.182039 TGAACGGATTCTGAATTCATGAAC 57.818 37.500 11.07 0.00 35.69 3.18
52 53 5.939883 TGAACGGATTCTGAATTCATGAACT 59.060 36.000 11.07 0.00 35.69 3.01
53 54 6.430925 TGAACGGATTCTGAATTCATGAACTT 59.569 34.615 11.07 6.56 35.69 2.66
54 55 6.824305 ACGGATTCTGAATTCATGAACTTT 57.176 33.333 11.07 1.63 0.00 2.66
55 56 7.219484 ACGGATTCTGAATTCATGAACTTTT 57.781 32.000 11.07 0.81 0.00 2.27
56 57 7.661040 ACGGATTCTGAATTCATGAACTTTTT 58.339 30.769 11.07 0.39 0.00 1.94
126 127 9.631257 ATGATAAACATTGTATGAAGTGGATGA 57.369 29.630 0.00 0.00 35.45 2.92
127 128 9.460019 TGATAAACATTGTATGAAGTGGATGAA 57.540 29.630 0.00 0.00 0.00 2.57
128 129 9.722056 GATAAACATTGTATGAAGTGGATGAAC 57.278 33.333 0.00 0.00 0.00 3.18
129 130 7.523293 AAACATTGTATGAAGTGGATGAACA 57.477 32.000 0.00 0.00 0.00 3.18
130 131 7.523293 AACATTGTATGAAGTGGATGAACAA 57.477 32.000 0.00 0.00 0.00 2.83
131 132 7.523293 ACATTGTATGAAGTGGATGAACAAA 57.477 32.000 0.00 0.00 0.00 2.83
132 133 8.125978 ACATTGTATGAAGTGGATGAACAAAT 57.874 30.769 0.00 0.00 0.00 2.32
133 134 8.587608 ACATTGTATGAAGTGGATGAACAAATT 58.412 29.630 0.00 0.00 0.00 1.82
134 135 9.426837 CATTGTATGAAGTGGATGAACAAATTT 57.573 29.630 0.00 0.00 0.00 1.82
136 137 8.815141 TGTATGAAGTGGATGAACAAATTTTG 57.185 30.769 7.59 7.59 0.00 2.44
137 138 8.637099 TGTATGAAGTGGATGAACAAATTTTGA 58.363 29.630 15.81 0.00 0.00 2.69
138 139 9.132521 GTATGAAGTGGATGAACAAATTTTGAG 57.867 33.333 15.81 0.00 0.00 3.02
139 140 7.111247 TGAAGTGGATGAACAAATTTTGAGT 57.889 32.000 15.81 3.26 0.00 3.41
140 141 7.555087 TGAAGTGGATGAACAAATTTTGAGTT 58.445 30.769 15.81 0.62 0.00 3.01
141 142 8.040132 TGAAGTGGATGAACAAATTTTGAGTTT 58.960 29.630 15.81 0.00 0.00 2.66
142 143 8.424274 AAGTGGATGAACAAATTTTGAGTTTC 57.576 30.769 15.81 9.47 0.00 2.78
143 144 7.555087 AGTGGATGAACAAATTTTGAGTTTCA 58.445 30.769 15.81 14.18 30.86 2.69
144 145 8.040132 AGTGGATGAACAAATTTTGAGTTTCAA 58.960 29.630 15.81 0.00 34.03 2.69
145 146 8.663911 GTGGATGAACAAATTTTGAGTTTCAAA 58.336 29.630 15.81 0.36 43.84 2.69
158 159 7.414814 TTGAGTTTCAAAAAGTTTTCACACC 57.585 32.000 0.32 0.00 32.71 4.16
159 160 6.754193 TGAGTTTCAAAAAGTTTTCACACCT 58.246 32.000 0.32 0.00 0.00 4.00
160 161 6.644592 TGAGTTTCAAAAAGTTTTCACACCTG 59.355 34.615 0.32 0.00 0.00 4.00
161 162 6.754193 AGTTTCAAAAAGTTTTCACACCTGA 58.246 32.000 0.32 0.00 0.00 3.86
162 163 7.386059 AGTTTCAAAAAGTTTTCACACCTGAT 58.614 30.769 0.32 0.00 0.00 2.90
163 164 7.877612 AGTTTCAAAAAGTTTTCACACCTGATT 59.122 29.630 0.32 0.00 0.00 2.57
164 165 8.503196 GTTTCAAAAAGTTTTCACACCTGATTT 58.497 29.630 0.32 0.00 0.00 2.17
165 166 7.593875 TCAAAAAGTTTTCACACCTGATTTG 57.406 32.000 0.32 0.00 0.00 2.32
166 167 7.382110 TCAAAAAGTTTTCACACCTGATTTGA 58.618 30.769 0.32 0.00 32.50 2.69
167 168 7.875041 TCAAAAAGTTTTCACACCTGATTTGAA 59.125 29.630 0.32 0.00 32.14 2.69
168 169 8.502387 CAAAAAGTTTTCACACCTGATTTGAAA 58.498 29.630 0.32 0.00 37.44 2.69
169 170 8.614469 AAAAGTTTTCACACCTGATTTGAAAA 57.386 26.923 4.94 4.94 43.55 2.29
170 171 8.614469 AAAGTTTTCACACCTGATTTGAAAAA 57.386 26.923 9.62 0.00 45.85 1.94
171 172 8.791327 AAGTTTTCACACCTGATTTGAAAAAT 57.209 26.923 9.62 6.71 45.85 1.82
172 173 8.200364 AGTTTTCACACCTGATTTGAAAAATG 57.800 30.769 9.62 0.00 45.85 2.32
173 174 7.823799 AGTTTTCACACCTGATTTGAAAAATGT 59.176 29.630 9.62 0.00 45.85 2.71
174 175 8.450180 GTTTTCACACCTGATTTGAAAAATGTT 58.550 29.630 9.62 0.00 45.85 2.71
175 176 7.769272 TTCACACCTGATTTGAAAAATGTTC 57.231 32.000 0.00 0.00 0.00 3.18
176 177 6.871844 TCACACCTGATTTGAAAAATGTTCA 58.128 32.000 0.00 0.00 0.00 3.18
177 178 6.756074 TCACACCTGATTTGAAAAATGTTCAC 59.244 34.615 0.00 0.00 0.00 3.18
178 179 5.748152 ACACCTGATTTGAAAAATGTTCACG 59.252 36.000 0.00 0.00 0.00 4.35
179 180 5.175491 CACCTGATTTGAAAAATGTTCACGG 59.825 40.000 0.00 0.00 0.00 4.94
180 181 5.068460 ACCTGATTTGAAAAATGTTCACGGA 59.932 36.000 0.00 0.00 0.00 4.69
181 182 6.158598 CCTGATTTGAAAAATGTTCACGGAT 58.841 36.000 0.00 0.00 0.00 4.18
182 183 6.646240 CCTGATTTGAAAAATGTTCACGGATT 59.354 34.615 0.00 0.00 0.00 3.01
183 184 7.171337 CCTGATTTGAAAAATGTTCACGGATTT 59.829 33.333 0.00 0.00 0.00 2.17
184 185 8.430801 TGATTTGAAAAATGTTCACGGATTTT 57.569 26.923 0.00 0.00 34.04 1.82
185 186 9.534565 TGATTTGAAAAATGTTCACGGATTTTA 57.465 25.926 0.00 0.00 32.66 1.52
187 188 9.757227 ATTTGAAAAATGTTCACGGATTTTAGA 57.243 25.926 0.00 0.00 32.66 2.10
188 189 9.587772 TTTGAAAAATGTTCACGGATTTTAGAA 57.412 25.926 0.00 0.00 32.66 2.10
189 190 8.795786 TGAAAAATGTTCACGGATTTTAGAAG 57.204 30.769 0.00 0.00 32.66 2.85
190 191 8.625651 TGAAAAATGTTCACGGATTTTAGAAGA 58.374 29.630 0.00 0.00 32.66 2.87
191 192 9.626045 GAAAAATGTTCACGGATTTTAGAAGAT 57.374 29.630 0.00 0.00 32.66 2.40
192 193 8.970691 AAAATGTTCACGGATTTTAGAAGATG 57.029 30.769 0.00 0.00 31.48 2.90
193 194 7.687941 AATGTTCACGGATTTTAGAAGATGT 57.312 32.000 0.00 0.00 0.00 3.06
194 195 7.687941 ATGTTCACGGATTTTAGAAGATGTT 57.312 32.000 0.00 0.00 0.00 2.71
195 196 7.129109 TGTTCACGGATTTTAGAAGATGTTC 57.871 36.000 0.00 0.00 0.00 3.18
196 197 6.128661 TGTTCACGGATTTTAGAAGATGTTCG 60.129 38.462 0.00 0.00 37.79 3.95
197 198 5.475719 TCACGGATTTTAGAAGATGTTCGT 58.524 37.500 0.00 0.00 37.79 3.85
198 199 5.347635 TCACGGATTTTAGAAGATGTTCGTG 59.652 40.000 0.00 0.00 43.42 4.35
199 200 5.347635 CACGGATTTTAGAAGATGTTCGTGA 59.652 40.000 0.00 0.00 44.36 4.35
200 201 5.929992 ACGGATTTTAGAAGATGTTCGTGAA 59.070 36.000 0.00 0.00 37.79 3.18
201 202 6.594159 ACGGATTTTAGAAGATGTTCGTGAAT 59.406 34.615 0.00 0.00 37.79 2.57
202 203 7.119262 ACGGATTTTAGAAGATGTTCGTGAATT 59.881 33.333 0.00 0.00 37.79 2.17
203 204 7.962918 CGGATTTTAGAAGATGTTCGTGAATTT 59.037 33.333 0.00 0.00 37.79 1.82
204 205 9.065871 GGATTTTAGAAGATGTTCGTGAATTTG 57.934 33.333 0.00 0.00 37.79 2.32
205 206 8.970691 ATTTTAGAAGATGTTCGTGAATTTGG 57.029 30.769 0.00 0.00 37.79 3.28
206 207 7.737972 TTTAGAAGATGTTCGTGAATTTGGA 57.262 32.000 0.00 0.00 37.79 3.53
207 208 7.737972 TTAGAAGATGTTCGTGAATTTGGAA 57.262 32.000 0.00 0.00 37.79 3.53
208 209 6.633500 AGAAGATGTTCGTGAATTTGGAAA 57.367 33.333 0.00 0.00 37.79 3.13
209 210 6.672147 AGAAGATGTTCGTGAATTTGGAAAG 58.328 36.000 0.00 0.00 37.79 2.62
210 211 6.486657 AGAAGATGTTCGTGAATTTGGAAAGA 59.513 34.615 0.00 0.00 37.79 2.52
211 212 6.633500 AGATGTTCGTGAATTTGGAAAGAA 57.367 33.333 0.00 0.00 0.00 2.52
212 213 7.038154 AGATGTTCGTGAATTTGGAAAGAAA 57.962 32.000 0.00 0.00 0.00 2.52
213 214 7.488322 AGATGTTCGTGAATTTGGAAAGAAAA 58.512 30.769 0.00 0.00 0.00 2.29
214 215 7.978975 AGATGTTCGTGAATTTGGAAAGAAAAA 59.021 29.630 0.00 0.00 0.00 1.94
276 277 8.477419 AATGAACAAATAGAAAGAACAAGGGA 57.523 30.769 0.00 0.00 0.00 4.20
277 278 7.889873 TGAACAAATAGAAAGAACAAGGGAA 57.110 32.000 0.00 0.00 0.00 3.97
278 279 8.299990 TGAACAAATAGAAAGAACAAGGGAAA 57.700 30.769 0.00 0.00 0.00 3.13
279 280 8.754080 TGAACAAATAGAAAGAACAAGGGAAAA 58.246 29.630 0.00 0.00 0.00 2.29
280 281 9.594478 GAACAAATAGAAAGAACAAGGGAAAAA 57.406 29.630 0.00 0.00 0.00 1.94
303 304 8.926715 AAAAACAAGTTTGGATGTTCTAGAAC 57.073 30.769 25.73 25.73 38.75 3.01
304 305 6.635030 AACAAGTTTGGATGTTCTAGAACC 57.365 37.500 28.43 16.52 40.46 3.62
305 306 5.941788 ACAAGTTTGGATGTTCTAGAACCT 58.058 37.500 28.43 20.95 40.46 3.50
306 307 6.365520 ACAAGTTTGGATGTTCTAGAACCTT 58.634 36.000 28.43 19.73 40.46 3.50
307 308 6.486993 ACAAGTTTGGATGTTCTAGAACCTTC 59.513 38.462 28.43 23.64 40.46 3.46
308 309 5.561679 AGTTTGGATGTTCTAGAACCTTCC 58.438 41.667 30.17 30.17 40.31 3.46
309 310 4.569719 TTGGATGTTCTAGAACCTTCCC 57.430 45.455 31.84 25.30 39.71 3.97
310 311 3.526899 TGGATGTTCTAGAACCTTCCCA 58.473 45.455 31.84 26.77 39.71 4.37
311 312 3.519510 TGGATGTTCTAGAACCTTCCCAG 59.480 47.826 31.84 0.00 39.71 4.45
312 313 3.775316 GGATGTTCTAGAACCTTCCCAGA 59.225 47.826 28.38 14.03 40.46 3.86
313 314 4.225267 GGATGTTCTAGAACCTTCCCAGAA 59.775 45.833 28.38 13.47 40.46 3.02
314 315 5.280521 GGATGTTCTAGAACCTTCCCAGAAA 60.281 44.000 28.38 12.91 40.46 2.52
315 316 4.969484 TGTTCTAGAACCTTCCCAGAAAC 58.031 43.478 28.43 4.48 40.46 2.78
316 317 3.955650 TCTAGAACCTTCCCAGAAACG 57.044 47.619 0.00 0.00 0.00 3.60
317 318 3.503365 TCTAGAACCTTCCCAGAAACGA 58.497 45.455 0.00 0.00 0.00 3.85
318 319 3.899360 TCTAGAACCTTCCCAGAAACGAA 59.101 43.478 0.00 0.00 0.00 3.85
319 320 3.570912 AGAACCTTCCCAGAAACGAAA 57.429 42.857 0.00 0.00 0.00 3.46
320 321 3.477530 AGAACCTTCCCAGAAACGAAAG 58.522 45.455 0.00 0.00 0.00 2.62
333 334 2.457366 ACGAAAGTGAGCTAGTTGGG 57.543 50.000 0.00 0.00 46.97 4.12
334 335 1.079503 CGAAAGTGAGCTAGTTGGGC 58.920 55.000 0.00 0.00 0.00 5.36
335 336 1.454201 GAAAGTGAGCTAGTTGGGCC 58.546 55.000 0.00 0.00 0.00 5.80
336 337 0.321653 AAAGTGAGCTAGTTGGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
337 338 1.481056 AAGTGAGCTAGTTGGGCCGT 61.481 55.000 0.00 0.00 0.00 5.68
338 339 1.741770 GTGAGCTAGTTGGGCCGTG 60.742 63.158 0.00 0.00 0.00 4.94
339 340 2.820037 GAGCTAGTTGGGCCGTGC 60.820 66.667 0.00 0.00 0.00 5.34
340 341 3.605749 GAGCTAGTTGGGCCGTGCA 62.606 63.158 0.00 0.00 0.00 4.57
341 342 2.438434 GCTAGTTGGGCCGTGCAT 60.438 61.111 0.00 0.00 0.00 3.96
342 343 2.764314 GCTAGTTGGGCCGTGCATG 61.764 63.158 0.00 0.00 0.00 4.06
343 344 1.377202 CTAGTTGGGCCGTGCATGT 60.377 57.895 4.96 0.00 0.00 3.21
344 345 1.369091 CTAGTTGGGCCGTGCATGTC 61.369 60.000 4.96 0.00 0.00 3.06
345 346 2.118233 TAGTTGGGCCGTGCATGTCA 62.118 55.000 4.96 0.00 0.00 3.58
346 347 2.035469 TTGGGCCGTGCATGTCAT 59.965 55.556 4.96 0.00 0.00 3.06
347 348 2.341875 TTGGGCCGTGCATGTCATG 61.342 57.895 8.56 8.56 0.00 3.07
358 359 1.921887 GCATGTCATGGATGCAAAACG 59.078 47.619 19.78 0.00 44.74 3.60
359 360 2.415759 GCATGTCATGGATGCAAAACGA 60.416 45.455 19.78 0.00 44.74 3.85
360 361 2.987413 TGTCATGGATGCAAAACGAC 57.013 45.000 0.00 0.00 0.00 4.34
361 362 2.225467 TGTCATGGATGCAAAACGACA 58.775 42.857 7.66 7.66 0.00 4.35
362 363 2.031245 TGTCATGGATGCAAAACGACAC 60.031 45.455 7.66 0.00 0.00 3.67
363 364 1.539388 TCATGGATGCAAAACGACACC 59.461 47.619 0.00 0.00 0.00 4.16
364 365 1.541147 CATGGATGCAAAACGACACCT 59.459 47.619 0.00 0.00 0.00 4.00
365 366 1.234821 TGGATGCAAAACGACACCTC 58.765 50.000 0.00 0.00 0.00 3.85
366 367 1.202758 TGGATGCAAAACGACACCTCT 60.203 47.619 0.00 0.00 0.00 3.69
367 368 1.464997 GGATGCAAAACGACACCTCTC 59.535 52.381 0.00 0.00 0.00 3.20
368 369 1.126846 GATGCAAAACGACACCTCTCG 59.873 52.381 0.00 0.00 39.68 4.04
369 370 1.204312 GCAAAACGACACCTCTCGC 59.796 57.895 0.00 0.00 37.15 5.03
370 371 1.860078 CAAAACGACACCTCTCGCC 59.140 57.895 0.00 0.00 37.15 5.54
371 372 1.663702 AAAACGACACCTCTCGCCG 60.664 57.895 0.00 0.00 37.15 6.46
372 373 2.079020 AAAACGACACCTCTCGCCGA 62.079 55.000 0.00 0.00 37.15 5.54
373 374 2.079020 AAACGACACCTCTCGCCGAA 62.079 55.000 0.00 0.00 37.15 4.30
374 375 2.202492 CGACACCTCTCGCCGAAG 60.202 66.667 0.00 0.00 0.00 3.79
375 376 2.507324 GACACCTCTCGCCGAAGC 60.507 66.667 0.00 0.00 0.00 3.86
376 377 3.282745 GACACCTCTCGCCGAAGCA 62.283 63.158 0.00 0.00 39.83 3.91
377 378 2.048222 CACCTCTCGCCGAAGCAA 60.048 61.111 0.00 0.00 39.83 3.91
378 379 2.097038 CACCTCTCGCCGAAGCAAG 61.097 63.158 0.00 0.00 39.83 4.01
379 380 3.191539 CCTCTCGCCGAAGCAAGC 61.192 66.667 0.00 0.00 39.83 4.01
380 381 3.191539 CTCTCGCCGAAGCAAGCC 61.192 66.667 0.00 0.00 39.83 4.35
392 393 4.693532 CAAGCCGTGCCTCTTGTA 57.306 55.556 0.00 0.00 36.01 2.41
393 394 2.460330 CAAGCCGTGCCTCTTGTAG 58.540 57.895 0.00 0.00 36.01 2.74
394 395 0.037326 CAAGCCGTGCCTCTTGTAGA 60.037 55.000 0.00 0.00 36.01 2.59
395 396 0.685097 AAGCCGTGCCTCTTGTAGAA 59.315 50.000 0.00 0.00 0.00 2.10
396 397 0.247736 AGCCGTGCCTCTTGTAGAAG 59.752 55.000 0.00 0.00 0.00 2.85
397 398 0.741221 GCCGTGCCTCTTGTAGAAGG 60.741 60.000 0.00 0.00 0.00 3.46
398 399 0.895530 CCGTGCCTCTTGTAGAAGGA 59.104 55.000 0.00 0.00 0.00 3.36
399 400 1.134965 CCGTGCCTCTTGTAGAAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
400 401 1.819288 CGTGCCTCTTGTAGAAGGAGA 59.181 52.381 0.00 0.00 0.00 3.71
401 402 2.231478 CGTGCCTCTTGTAGAAGGAGAA 59.769 50.000 0.00 0.00 0.00 2.87
402 403 3.306088 CGTGCCTCTTGTAGAAGGAGAAA 60.306 47.826 0.00 0.00 0.00 2.52
403 404 4.642429 GTGCCTCTTGTAGAAGGAGAAAA 58.358 43.478 0.00 0.00 0.00 2.29
404 405 5.063880 GTGCCTCTTGTAGAAGGAGAAAAA 58.936 41.667 0.00 0.00 0.00 1.94
438 439 4.488126 TTTTTCGTTTCAGAGAGGCATG 57.512 40.909 0.00 0.00 0.00 4.06
439 440 2.099141 TTCGTTTCAGAGAGGCATGG 57.901 50.000 0.00 0.00 0.00 3.66
440 441 0.391661 TCGTTTCAGAGAGGCATGGC 60.392 55.000 12.14 12.14 0.00 4.40
441 442 1.699656 CGTTTCAGAGAGGCATGGCG 61.700 60.000 14.30 0.00 0.00 5.69
442 443 0.674895 GTTTCAGAGAGGCATGGCGT 60.675 55.000 14.30 5.14 0.00 5.68
443 444 0.674581 TTTCAGAGAGGCATGGCGTG 60.675 55.000 14.30 10.21 0.00 5.34
444 445 1.830587 TTCAGAGAGGCATGGCGTGT 61.831 55.000 14.30 1.90 0.00 4.49
445 446 1.812922 CAGAGAGGCATGGCGTGTC 60.813 63.158 14.30 2.31 37.06 3.67
449 450 2.267006 AGGCATGGCGTGTCTCTG 59.733 61.111 8.28 0.00 38.83 3.35
450 451 2.821366 GGCATGGCGTGTCTCTGG 60.821 66.667 2.41 0.00 0.00 3.86
451 452 3.503363 GCATGGCGTGTCTCTGGC 61.503 66.667 8.75 0.00 0.00 4.85
452 453 3.190849 CATGGCGTGTCTCTGGCG 61.191 66.667 0.00 0.00 0.00 5.69
453 454 4.457496 ATGGCGTGTCTCTGGCGG 62.457 66.667 0.00 0.00 0.00 6.13
455 456 4.373116 GGCGTGTCTCTGGCGGAA 62.373 66.667 0.00 0.00 0.00 4.30
456 457 2.811317 GCGTGTCTCTGGCGGAAG 60.811 66.667 0.00 0.00 0.00 3.46
468 469 2.650778 CGGAAGCAAAACCCTGCC 59.349 61.111 0.00 0.00 43.73 4.85
469 470 1.903404 CGGAAGCAAAACCCTGCCT 60.903 57.895 0.00 0.00 43.73 4.75
470 471 1.866853 CGGAAGCAAAACCCTGCCTC 61.867 60.000 0.00 0.00 43.73 4.70
471 472 0.540597 GGAAGCAAAACCCTGCCTCT 60.541 55.000 0.00 0.00 43.73 3.69
472 473 0.884514 GAAGCAAAACCCTGCCTCTC 59.115 55.000 0.00 0.00 43.73 3.20
473 474 0.890996 AAGCAAAACCCTGCCTCTCG 60.891 55.000 0.00 0.00 43.73 4.04
474 475 2.982744 GCAAAACCCTGCCTCTCGC 61.983 63.158 0.00 0.00 36.25 5.03
483 484 3.395210 TGCCTCTCGCAGAACAAAA 57.605 47.368 0.00 0.00 44.64 2.44
484 485 1.674359 TGCCTCTCGCAGAACAAAAA 58.326 45.000 0.00 0.00 44.64 1.94
545 546 6.762702 TTTCAAAAGTTAAGAAAGACCGGT 57.237 33.333 6.92 6.92 0.00 5.28
546 547 5.744666 TCAAAAGTTAAGAAAGACCGGTG 57.255 39.130 14.63 0.00 0.00 4.94
547 548 5.430007 TCAAAAGTTAAGAAAGACCGGTGA 58.570 37.500 14.63 0.00 0.00 4.02
548 549 5.881443 TCAAAAGTTAAGAAAGACCGGTGAA 59.119 36.000 14.63 0.00 0.00 3.18
549 550 6.374894 TCAAAAGTTAAGAAAGACCGGTGAAA 59.625 34.615 14.63 0.00 0.00 2.69
550 551 6.762702 AAAGTTAAGAAAGACCGGTGAAAA 57.237 33.333 14.63 0.00 0.00 2.29
551 552 6.762702 AAGTTAAGAAAGACCGGTGAAAAA 57.237 33.333 14.63 0.00 0.00 1.94
552 553 6.954487 AGTTAAGAAAGACCGGTGAAAAAT 57.046 33.333 14.63 0.00 0.00 1.82
553 554 6.967135 AGTTAAGAAAGACCGGTGAAAAATC 58.033 36.000 14.63 1.14 0.00 2.17
554 555 6.544564 AGTTAAGAAAGACCGGTGAAAAATCA 59.455 34.615 14.63 0.00 0.00 2.57
555 556 5.845391 AAGAAAGACCGGTGAAAAATCAA 57.155 34.783 14.63 0.00 0.00 2.57
556 557 5.845391 AGAAAGACCGGTGAAAAATCAAA 57.155 34.783 14.63 0.00 0.00 2.69
557 558 6.215495 AGAAAGACCGGTGAAAAATCAAAA 57.785 33.333 14.63 0.00 0.00 2.44
558 559 6.816136 AGAAAGACCGGTGAAAAATCAAAAT 58.184 32.000 14.63 0.00 0.00 1.82
559 560 6.701400 AGAAAGACCGGTGAAAAATCAAAATG 59.299 34.615 14.63 0.00 0.00 2.32
560 561 4.306600 AGACCGGTGAAAAATCAAAATGC 58.693 39.130 14.63 0.00 0.00 3.56
561 562 3.398406 ACCGGTGAAAAATCAAAATGCC 58.602 40.909 6.12 0.00 0.00 4.40
562 563 3.181461 ACCGGTGAAAAATCAAAATGCCA 60.181 39.130 6.12 0.00 0.00 4.92
563 564 3.812053 CCGGTGAAAAATCAAAATGCCAA 59.188 39.130 0.00 0.00 0.00 4.52
564 565 4.274459 CCGGTGAAAAATCAAAATGCCAAA 59.726 37.500 0.00 0.00 0.00 3.28
565 566 5.220931 CCGGTGAAAAATCAAAATGCCAAAA 60.221 36.000 0.00 0.00 0.00 2.44
566 567 6.261118 CGGTGAAAAATCAAAATGCCAAAAA 58.739 32.000 0.00 0.00 0.00 1.94
594 595 2.821307 AAAACCAAAAACGCGTACGA 57.179 40.000 21.65 0.00 43.93 3.43
595 596 2.821307 AAACCAAAAACGCGTACGAA 57.179 40.000 21.65 0.00 43.93 3.85
596 597 2.821307 AACCAAAAACGCGTACGAAA 57.179 40.000 21.65 0.00 43.93 3.46
597 598 2.821307 ACCAAAAACGCGTACGAAAA 57.179 40.000 21.65 0.00 43.93 2.29
598 599 3.128465 ACCAAAAACGCGTACGAAAAA 57.872 38.095 21.65 0.00 43.93 1.94
599 600 3.100089 ACCAAAAACGCGTACGAAAAAG 58.900 40.909 21.65 6.52 43.93 2.27
600 601 3.181512 ACCAAAAACGCGTACGAAAAAGA 60.182 39.130 21.65 0.00 43.93 2.52
601 602 3.784994 CCAAAAACGCGTACGAAAAAGAA 59.215 39.130 21.65 0.00 43.93 2.52
602 603 4.262510 CCAAAAACGCGTACGAAAAAGAAA 59.737 37.500 21.65 0.00 43.93 2.52
603 604 5.219987 CCAAAAACGCGTACGAAAAAGAAAA 60.220 36.000 21.65 0.00 43.93 2.29
604 605 4.979200 AAACGCGTACGAAAAAGAAAAC 57.021 36.364 21.65 0.00 43.93 2.43
605 606 2.617366 ACGCGTACGAAAAAGAAAACG 58.383 42.857 21.65 11.12 43.93 3.60
606 607 1.957897 CGCGTACGAAAAAGAAAACGG 59.042 47.619 21.65 0.00 43.93 4.44
607 608 1.705041 GCGTACGAAAAAGAAAACGGC 59.295 47.619 21.65 0.00 0.00 5.68
608 609 2.850254 GCGTACGAAAAAGAAAACGGCA 60.850 45.455 21.65 0.00 0.00 5.69
609 610 2.962191 CGTACGAAAAAGAAAACGGCAG 59.038 45.455 10.44 0.00 0.00 4.85
610 611 2.485266 ACGAAAAAGAAAACGGCAGG 57.515 45.000 0.00 0.00 0.00 4.85
611 612 2.018515 ACGAAAAAGAAAACGGCAGGA 58.981 42.857 0.00 0.00 0.00 3.86
612 613 2.223409 ACGAAAAAGAAAACGGCAGGAC 60.223 45.455 0.00 0.00 0.00 3.85
613 614 2.381589 GAAAAAGAAAACGGCAGGACG 58.618 47.619 0.00 0.00 40.31 4.79
614 615 0.030235 AAAAGAAAACGGCAGGACGC 59.970 50.000 0.00 0.00 41.28 5.19
652 653 4.724602 GTGGCTGAGCGCGAGTGA 62.725 66.667 12.10 0.00 40.44 3.41
653 654 4.724602 TGGCTGAGCGCGAGTGAC 62.725 66.667 12.10 0.00 40.44 3.67
663 664 2.575525 CGAGTGACGCGCTCTCAG 60.576 66.667 22.67 15.40 38.67 3.35
664 665 2.878520 GAGTGACGCGCTCTCAGC 60.879 66.667 20.07 8.06 37.92 4.26
665 666 4.427661 AGTGACGCGCTCTCAGCC 62.428 66.667 5.73 0.00 38.18 4.85
666 667 4.427661 GTGACGCGCTCTCAGCCT 62.428 66.667 5.73 0.00 38.18 4.58
667 668 4.121669 TGACGCGCTCTCAGCCTC 62.122 66.667 5.73 0.00 38.18 4.70
668 669 4.863925 GACGCGCTCTCAGCCTCC 62.864 72.222 5.73 0.00 38.18 4.30
671 672 2.835431 GCGCTCTCAGCCTCCCTA 60.835 66.667 0.00 0.00 38.18 3.53
672 673 2.855514 GCGCTCTCAGCCTCCCTAG 61.856 68.421 0.00 0.00 38.18 3.02
673 674 1.152860 CGCTCTCAGCCTCCCTAGA 60.153 63.158 0.00 0.00 38.18 2.43
674 675 0.539438 CGCTCTCAGCCTCCCTAGAT 60.539 60.000 0.00 0.00 38.18 1.98
675 676 0.968405 GCTCTCAGCCTCCCTAGATG 59.032 60.000 0.00 0.00 34.48 2.90
676 677 1.480312 GCTCTCAGCCTCCCTAGATGA 60.480 57.143 0.00 0.00 34.48 2.92
677 678 2.238521 CTCTCAGCCTCCCTAGATGAC 58.761 57.143 0.00 0.00 0.00 3.06
678 679 1.133325 TCTCAGCCTCCCTAGATGACC 60.133 57.143 0.00 0.00 0.00 4.02
679 680 0.105453 TCAGCCTCCCTAGATGACCC 60.105 60.000 0.00 0.00 0.00 4.46
680 681 0.105246 CAGCCTCCCTAGATGACCCT 60.105 60.000 0.00 0.00 0.00 4.34
681 682 0.644937 AGCCTCCCTAGATGACCCTT 59.355 55.000 0.00 0.00 0.00 3.95
682 683 0.761802 GCCTCCCTAGATGACCCTTG 59.238 60.000 0.00 0.00 0.00 3.61
683 684 0.761802 CCTCCCTAGATGACCCTTGC 59.238 60.000 0.00 0.00 0.00 4.01
684 685 1.500474 CTCCCTAGATGACCCTTGCA 58.500 55.000 0.00 0.00 0.00 4.08
685 686 1.415659 CTCCCTAGATGACCCTTGCAG 59.584 57.143 0.00 0.00 0.00 4.41
686 687 0.471617 CCCTAGATGACCCTTGCAGG 59.528 60.000 0.00 0.00 34.30 4.85
687 688 0.179034 CCTAGATGACCCTTGCAGGC 60.179 60.000 0.00 0.00 32.73 4.85
688 689 0.835941 CTAGATGACCCTTGCAGGCT 59.164 55.000 0.00 0.00 32.73 4.58
689 690 1.211457 CTAGATGACCCTTGCAGGCTT 59.789 52.381 0.00 0.00 32.73 4.35
690 691 0.034670 AGATGACCCTTGCAGGCTTC 60.035 55.000 0.00 0.00 32.73 3.86
691 692 1.000396 ATGACCCTTGCAGGCTTCC 60.000 57.895 0.00 0.00 32.73 3.46
692 693 2.747855 GACCCTTGCAGGCTTCCG 60.748 66.667 0.00 0.00 32.73 4.30
693 694 3.249189 ACCCTTGCAGGCTTCCGA 61.249 61.111 0.00 0.00 32.73 4.55
694 695 2.034066 CCCTTGCAGGCTTCCGAA 59.966 61.111 0.00 0.00 32.73 4.30
695 696 1.379044 CCCTTGCAGGCTTCCGAAT 60.379 57.895 0.00 0.00 32.73 3.34
696 697 1.660560 CCCTTGCAGGCTTCCGAATG 61.661 60.000 0.00 0.00 32.73 2.67
697 698 0.677731 CCTTGCAGGCTTCCGAATGA 60.678 55.000 0.00 0.00 0.00 2.57
698 699 0.731417 CTTGCAGGCTTCCGAATGAG 59.269 55.000 0.00 0.00 0.00 2.90
699 700 1.308069 TTGCAGGCTTCCGAATGAGC 61.308 55.000 0.00 0.00 0.00 4.26
700 701 1.746615 GCAGGCTTCCGAATGAGCA 60.747 57.895 0.00 0.00 0.00 4.26
701 702 1.986575 GCAGGCTTCCGAATGAGCAC 61.987 60.000 0.00 0.00 0.00 4.40
702 703 0.392193 CAGGCTTCCGAATGAGCACT 60.392 55.000 0.00 0.00 0.00 4.40
703 704 0.107945 AGGCTTCCGAATGAGCACTC 60.108 55.000 0.00 0.00 0.00 3.51
704 705 1.424493 GGCTTCCGAATGAGCACTCG 61.424 60.000 0.00 0.00 34.83 4.18
705 706 0.737715 GCTTCCGAATGAGCACTCGT 60.738 55.000 0.66 0.00 33.17 4.18
706 707 1.714794 CTTCCGAATGAGCACTCGTT 58.285 50.000 4.80 4.80 41.16 3.85
707 708 2.876091 CTTCCGAATGAGCACTCGTTA 58.124 47.619 5.12 0.00 38.80 3.18
708 709 2.561733 TCCGAATGAGCACTCGTTAG 57.438 50.000 5.12 5.56 38.80 2.34
709 710 1.816835 TCCGAATGAGCACTCGTTAGT 59.183 47.619 5.12 0.00 38.80 2.24
710 711 2.230508 TCCGAATGAGCACTCGTTAGTT 59.769 45.455 5.12 0.00 38.80 2.24
711 712 3.441222 TCCGAATGAGCACTCGTTAGTTA 59.559 43.478 5.12 0.00 38.80 2.24
712 713 3.791887 CCGAATGAGCACTCGTTAGTTAG 59.208 47.826 5.12 0.00 38.80 2.34
713 714 4.413087 CGAATGAGCACTCGTTAGTTAGT 58.587 43.478 5.12 0.00 38.80 2.24
714 715 4.263209 CGAATGAGCACTCGTTAGTTAGTG 59.737 45.833 5.12 0.00 44.79 2.74
715 716 3.570926 TGAGCACTCGTTAGTTAGTGG 57.429 47.619 4.79 0.00 42.72 4.00
716 717 2.260481 GAGCACTCGTTAGTTAGTGGC 58.740 52.381 4.79 0.00 42.72 5.01
717 718 1.893801 AGCACTCGTTAGTTAGTGGCT 59.106 47.619 4.79 0.00 42.72 4.75
718 719 2.094649 AGCACTCGTTAGTTAGTGGCTC 60.095 50.000 4.79 0.00 42.72 4.70
764 765 5.507650 CGTATAGGGCTCTTCTTGGACTTAC 60.508 48.000 0.00 0.00 0.00 2.34
1031 1032 4.623814 CATGACACTCGCCATGGT 57.376 55.556 14.67 0.00 37.19 3.55
1056 1057 3.069318 ACGGACGCCTCCCTCTTC 61.069 66.667 0.00 0.00 31.93 2.87
1070 1071 2.033602 CTTCCACCCCACGTTCCC 59.966 66.667 0.00 0.00 0.00 3.97
1441 1442 5.642686 TGCAACACCTAAAATAATTACCGC 58.357 37.500 0.00 0.00 0.00 5.68
1608 1635 5.256806 AGGGTAGCTTCCACTGTTAATTT 57.743 39.130 11.91 0.00 0.00 1.82
1612 1639 6.095021 GGGTAGCTTCCACTGTTAATTTTAGG 59.905 42.308 11.91 0.00 0.00 2.69
1613 1640 6.095021 GGTAGCTTCCACTGTTAATTTTAGGG 59.905 42.308 4.19 0.00 0.00 3.53
1615 1642 6.786122 AGCTTCCACTGTTAATTTTAGGGTA 58.214 36.000 0.00 0.00 0.00 3.69
1616 1643 6.884836 AGCTTCCACTGTTAATTTTAGGGTAG 59.115 38.462 0.00 0.00 0.00 3.18
1929 1976 2.386661 AAGCCATCGAGACGTTCAAT 57.613 45.000 0.00 0.00 0.00 2.57
2065 2112 8.296713 TGTTTAGAGTATTTTTCATCACTTGCC 58.703 33.333 0.00 0.00 0.00 4.52
2138 2185 1.787155 CACCTTGAGACGACTTGAACG 59.213 52.381 0.00 0.00 0.00 3.95
2141 2188 2.978489 CCTTGAGACGACTTGAACGTAC 59.022 50.000 0.00 0.00 43.97 3.67
2178 2225 4.324267 GGATTATTATCACCTTGACGGGG 58.676 47.826 0.00 0.00 37.63 5.73
2179 2226 4.202430 GGATTATTATCACCTTGACGGGGT 60.202 45.833 0.00 0.00 37.50 4.95
2185 2232 1.700739 TCACCTTGACGGGGTTGTATT 59.299 47.619 0.00 0.00 37.50 1.89
2197 2244 3.117776 GGGGTTGTATTCCTTATCCCGTT 60.118 47.826 0.00 0.00 34.78 4.44
2236 2283 4.846779 TGTTTGATGAACAACTAAGGGC 57.153 40.909 0.00 0.00 44.95 5.19
2237 2284 4.211125 TGTTTGATGAACAACTAAGGGCA 58.789 39.130 0.00 0.00 44.95 5.36
2238 2285 4.278170 TGTTTGATGAACAACTAAGGGCAG 59.722 41.667 0.00 0.00 44.95 4.85
2239 2286 3.788227 TGATGAACAACTAAGGGCAGT 57.212 42.857 0.00 0.00 0.00 4.40
2240 2287 4.901197 TGATGAACAACTAAGGGCAGTA 57.099 40.909 0.00 0.00 0.00 2.74
2241 2288 4.575885 TGATGAACAACTAAGGGCAGTAC 58.424 43.478 0.00 0.00 0.00 2.73
2242 2289 4.041075 TGATGAACAACTAAGGGCAGTACA 59.959 41.667 0.00 0.00 0.00 2.90
2243 2290 3.735591 TGAACAACTAAGGGCAGTACAC 58.264 45.455 0.00 0.00 0.00 2.90
2326 2388 5.163195 ACCTTCTGTTTAACAGGACATCAGT 60.163 40.000 22.82 9.69 45.94 3.41
2691 2837 7.530426 AGCAACTAATTTCTCCAGAATTGTT 57.470 32.000 0.00 0.00 33.54 2.83
2846 2992 4.828925 GCAGAGGAGAGCGGGTGC 62.829 72.222 0.00 0.00 43.24 5.01
2866 3012 2.221981 GCTTCTTTTGGACACACGAGAG 59.778 50.000 0.00 0.00 0.00 3.20
2890 3036 3.213506 ACACTGCTGAAATGTTACTGCA 58.786 40.909 0.00 0.00 38.71 4.41
2941 3087 0.532417 CTGCACTAGCCTCCTGATGC 60.532 60.000 0.00 0.00 41.13 3.91
2965 3111 1.558756 GCTATCTCCTCCCATCCCATG 59.441 57.143 0.00 0.00 0.00 3.66
3009 3155 4.263435 TGCTGCTGATGTCATCATGTTAA 58.737 39.130 15.84 0.44 38.85 2.01
3027 3173 7.866898 TCATGTTAATTTCTTGTCAACACCATG 59.133 33.333 0.00 0.00 32.39 3.66
3115 3262 9.200817 AGGTTTTGTTGGTAATGCTAATATGAT 57.799 29.630 0.00 0.00 0.00 2.45
3210 3357 9.696917 GACATTTTTCACAGAACCAAAGATATT 57.303 29.630 0.00 0.00 0.00 1.28
3221 3368 6.186420 AACCAAAGATATTTTGGGTTGCTT 57.814 33.333 15.38 6.66 46.63 3.91
3263 3452 3.131396 GAGAGCAGTTCCAACGAGAAAA 58.869 45.455 0.00 0.00 0.00 2.29
3307 3496 8.970859 ATGCTAGCAGATACAAAAAGATAGTT 57.029 30.769 23.89 0.00 0.00 2.24
3368 3557 5.132502 CAGTATCCTACATTGCCCATGAAA 58.867 41.667 0.00 0.00 36.24 2.69
3447 3636 6.370442 TGATAATGAGGTTTTAGGTTCACACG 59.630 38.462 0.00 0.00 0.00 4.49
3488 3677 0.236711 CAGGATGCGGCGATCAATTC 59.763 55.000 12.98 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.956797 CGTTCATCCAATTCAAAAATTATTCAC 57.043 29.630 0.00 0.00 33.27 3.18
9 10 9.364989 TCCGTTCATCCAATTCAAAAATTATTC 57.635 29.630 0.00 0.00 33.27 1.75
10 11 9.889128 ATCCGTTCATCCAATTCAAAAATTATT 57.111 25.926 0.00 0.00 33.27 1.40
11 12 9.889128 AATCCGTTCATCCAATTCAAAAATTAT 57.111 25.926 0.00 0.00 33.27 1.28
12 13 9.364989 GAATCCGTTCATCCAATTCAAAAATTA 57.635 29.630 0.00 0.00 32.84 1.40
13 14 8.096414 AGAATCCGTTCATCCAATTCAAAAATT 58.904 29.630 0.00 0.00 36.79 1.82
14 15 7.546667 CAGAATCCGTTCATCCAATTCAAAAAT 59.453 33.333 0.00 0.00 36.79 1.82
15 16 6.867816 CAGAATCCGTTCATCCAATTCAAAAA 59.132 34.615 0.00 0.00 36.79 1.94
16 17 6.208402 TCAGAATCCGTTCATCCAATTCAAAA 59.792 34.615 0.00 0.00 36.79 2.44
17 18 5.709631 TCAGAATCCGTTCATCCAATTCAAA 59.290 36.000 0.00 0.00 36.79 2.69
18 19 5.252547 TCAGAATCCGTTCATCCAATTCAA 58.747 37.500 0.00 0.00 36.79 2.69
19 20 4.842574 TCAGAATCCGTTCATCCAATTCA 58.157 39.130 0.00 0.00 36.79 2.57
20 21 5.818136 TTCAGAATCCGTTCATCCAATTC 57.182 39.130 0.00 0.00 36.79 2.17
21 22 6.377996 TGAATTCAGAATCCGTTCATCCAATT 59.622 34.615 3.38 0.00 36.79 2.32
22 23 5.887598 TGAATTCAGAATCCGTTCATCCAAT 59.112 36.000 3.38 0.00 36.79 3.16
23 24 5.252547 TGAATTCAGAATCCGTTCATCCAA 58.747 37.500 3.38 0.00 36.79 3.53
24 25 4.842574 TGAATTCAGAATCCGTTCATCCA 58.157 39.130 3.38 0.00 36.79 3.41
25 26 5.528690 TCATGAATTCAGAATCCGTTCATCC 59.471 40.000 14.54 0.00 37.40 3.51
26 27 6.609237 TCATGAATTCAGAATCCGTTCATC 57.391 37.500 14.54 0.00 37.40 2.92
27 28 6.600822 AGTTCATGAATTCAGAATCCGTTCAT 59.399 34.615 12.12 0.22 39.39 2.57
28 29 5.939883 AGTTCATGAATTCAGAATCCGTTCA 59.060 36.000 12.12 0.00 36.79 3.18
29 30 6.428385 AGTTCATGAATTCAGAATCCGTTC 57.572 37.500 12.12 5.33 34.46 3.95
30 31 6.824305 AAGTTCATGAATTCAGAATCCGTT 57.176 33.333 12.12 7.57 0.00 4.44
31 32 6.824305 AAAGTTCATGAATTCAGAATCCGT 57.176 33.333 12.12 3.52 0.00 4.69
100 101 9.631257 TCATCCACTTCATACAATGTTTATCAT 57.369 29.630 0.00 0.00 38.57 2.45
101 102 9.460019 TTCATCCACTTCATACAATGTTTATCA 57.540 29.630 0.00 0.00 0.00 2.15
102 103 9.722056 GTTCATCCACTTCATACAATGTTTATC 57.278 33.333 0.00 0.00 0.00 1.75
103 104 9.241919 TGTTCATCCACTTCATACAATGTTTAT 57.758 29.630 0.00 0.00 0.00 1.40
104 105 8.628630 TGTTCATCCACTTCATACAATGTTTA 57.371 30.769 0.00 0.00 0.00 2.01
105 106 7.523293 TGTTCATCCACTTCATACAATGTTT 57.477 32.000 0.00 0.00 0.00 2.83
106 107 7.523293 TTGTTCATCCACTTCATACAATGTT 57.477 32.000 0.00 0.00 0.00 2.71
107 108 7.523293 TTTGTTCATCCACTTCATACAATGT 57.477 32.000 0.00 0.00 0.00 2.71
108 109 8.991243 AATTTGTTCATCCACTTCATACAATG 57.009 30.769 0.00 0.00 0.00 2.82
110 111 9.258826 CAAAATTTGTTCATCCACTTCATACAA 57.741 29.630 0.00 0.00 0.00 2.41
111 112 8.637099 TCAAAATTTGTTCATCCACTTCATACA 58.363 29.630 5.56 0.00 0.00 2.29
112 113 9.132521 CTCAAAATTTGTTCATCCACTTCATAC 57.867 33.333 5.56 0.00 0.00 2.39
113 114 8.859090 ACTCAAAATTTGTTCATCCACTTCATA 58.141 29.630 5.56 0.00 0.00 2.15
114 115 7.729116 ACTCAAAATTTGTTCATCCACTTCAT 58.271 30.769 5.56 0.00 0.00 2.57
115 116 7.111247 ACTCAAAATTTGTTCATCCACTTCA 57.889 32.000 5.56 0.00 0.00 3.02
116 117 8.424274 AAACTCAAAATTTGTTCATCCACTTC 57.576 30.769 5.56 0.00 0.00 3.01
117 118 8.040132 TGAAACTCAAAATTTGTTCATCCACTT 58.960 29.630 5.56 0.00 0.00 3.16
118 119 7.555087 TGAAACTCAAAATTTGTTCATCCACT 58.445 30.769 5.56 0.00 0.00 4.00
119 120 7.769272 TGAAACTCAAAATTTGTTCATCCAC 57.231 32.000 5.56 0.00 0.00 4.02
120 121 8.783833 TTTGAAACTCAAAATTTGTTCATCCA 57.216 26.923 5.56 0.00 42.72 3.41
133 134 7.713073 AGGTGTGAAAACTTTTTGAAACTCAAA 59.287 29.630 0.00 0.00 43.84 2.69
134 135 7.170658 CAGGTGTGAAAACTTTTTGAAACTCAA 59.829 33.333 0.00 0.00 34.03 3.02
135 136 6.644592 CAGGTGTGAAAACTTTTTGAAACTCA 59.355 34.615 0.00 0.00 0.00 3.41
136 137 6.866248 TCAGGTGTGAAAACTTTTTGAAACTC 59.134 34.615 0.00 0.00 0.00 3.01
137 138 6.754193 TCAGGTGTGAAAACTTTTTGAAACT 58.246 32.000 0.00 0.00 0.00 2.66
138 139 7.595311 ATCAGGTGTGAAAACTTTTTGAAAC 57.405 32.000 0.00 0.00 35.88 2.78
139 140 8.502387 CAAATCAGGTGTGAAAACTTTTTGAAA 58.498 29.630 0.00 0.00 35.88 2.69
140 141 7.875041 TCAAATCAGGTGTGAAAACTTTTTGAA 59.125 29.630 0.00 0.00 33.97 2.69
141 142 7.382110 TCAAATCAGGTGTGAAAACTTTTTGA 58.618 30.769 0.00 0.00 34.26 2.69
142 143 7.593875 TCAAATCAGGTGTGAAAACTTTTTG 57.406 32.000 0.00 0.00 35.88 2.44
143 144 8.614469 TTTCAAATCAGGTGTGAAAACTTTTT 57.386 26.923 0.00 0.00 38.09 1.94
144 145 8.614469 TTTTCAAATCAGGTGTGAAAACTTTT 57.386 26.923 7.58 0.00 43.03 2.27
145 146 8.614469 TTTTTCAAATCAGGTGTGAAAACTTT 57.386 26.923 10.85 0.00 45.85 2.66
146 147 8.667463 CATTTTTCAAATCAGGTGTGAAAACTT 58.333 29.630 10.85 0.60 45.85 2.66
147 148 7.823799 ACATTTTTCAAATCAGGTGTGAAAACT 59.176 29.630 10.85 3.98 45.85 2.66
148 149 7.973601 ACATTTTTCAAATCAGGTGTGAAAAC 58.026 30.769 10.85 0.00 45.85 2.43
149 150 8.558973 AACATTTTTCAAATCAGGTGTGAAAA 57.441 26.923 7.58 7.58 45.02 2.29
150 151 7.821359 TGAACATTTTTCAAATCAGGTGTGAAA 59.179 29.630 0.00 0.00 39.00 2.69
151 152 7.277539 GTGAACATTTTTCAAATCAGGTGTGAA 59.722 33.333 0.00 0.00 35.88 3.18
152 153 6.756074 GTGAACATTTTTCAAATCAGGTGTGA 59.244 34.615 0.00 0.00 37.02 3.58
153 154 6.291743 CGTGAACATTTTTCAAATCAGGTGTG 60.292 38.462 0.00 0.00 0.00 3.82
154 155 5.748152 CGTGAACATTTTTCAAATCAGGTGT 59.252 36.000 0.00 0.00 0.00 4.16
155 156 5.175491 CCGTGAACATTTTTCAAATCAGGTG 59.825 40.000 0.00 0.00 0.00 4.00
156 157 5.068460 TCCGTGAACATTTTTCAAATCAGGT 59.932 36.000 0.00 0.00 0.00 4.00
157 158 5.527951 TCCGTGAACATTTTTCAAATCAGG 58.472 37.500 0.00 0.00 0.00 3.86
158 159 7.642071 AATCCGTGAACATTTTTCAAATCAG 57.358 32.000 0.00 0.00 0.00 2.90
159 160 8.430801 AAAATCCGTGAACATTTTTCAAATCA 57.569 26.923 0.00 0.00 29.63 2.57
161 162 9.757227 TCTAAAATCCGTGAACATTTTTCAAAT 57.243 25.926 0.00 0.00 34.68 2.32
162 163 9.587772 TTCTAAAATCCGTGAACATTTTTCAAA 57.412 25.926 0.00 0.00 34.68 2.69
163 164 9.243637 CTTCTAAAATCCGTGAACATTTTTCAA 57.756 29.630 0.00 0.00 34.68 2.69
164 165 8.625651 TCTTCTAAAATCCGTGAACATTTTTCA 58.374 29.630 0.00 0.00 34.68 2.69
165 166 9.626045 ATCTTCTAAAATCCGTGAACATTTTTC 57.374 29.630 0.00 0.00 34.68 2.29
166 167 9.410556 CATCTTCTAAAATCCGTGAACATTTTT 57.589 29.630 0.00 0.00 34.68 1.94
167 168 8.576442 ACATCTTCTAAAATCCGTGAACATTTT 58.424 29.630 0.00 0.00 36.43 1.82
168 169 8.110860 ACATCTTCTAAAATCCGTGAACATTT 57.889 30.769 0.00 0.00 0.00 2.32
169 170 7.687941 ACATCTTCTAAAATCCGTGAACATT 57.312 32.000 0.00 0.00 0.00 2.71
170 171 7.413000 CGAACATCTTCTAAAATCCGTGAACAT 60.413 37.037 0.00 0.00 0.00 2.71
171 172 6.128661 CGAACATCTTCTAAAATCCGTGAACA 60.129 38.462 0.00 0.00 0.00 3.18
172 173 6.128634 ACGAACATCTTCTAAAATCCGTGAAC 60.129 38.462 0.00 0.00 0.00 3.18
173 174 5.929992 ACGAACATCTTCTAAAATCCGTGAA 59.070 36.000 0.00 0.00 0.00 3.18
174 175 5.347635 CACGAACATCTTCTAAAATCCGTGA 59.652 40.000 0.00 0.00 44.06 4.35
175 176 5.347635 TCACGAACATCTTCTAAAATCCGTG 59.652 40.000 0.00 0.00 43.11 4.94
176 177 5.475719 TCACGAACATCTTCTAAAATCCGT 58.524 37.500 0.00 0.00 0.00 4.69
177 178 6.403333 TTCACGAACATCTTCTAAAATCCG 57.597 37.500 0.00 0.00 0.00 4.18
178 179 9.065871 CAAATTCACGAACATCTTCTAAAATCC 57.934 33.333 0.00 0.00 0.00 3.01
179 180 9.065871 CCAAATTCACGAACATCTTCTAAAATC 57.934 33.333 0.00 0.00 0.00 2.17
180 181 8.792633 TCCAAATTCACGAACATCTTCTAAAAT 58.207 29.630 0.00 0.00 0.00 1.82
181 182 8.160521 TCCAAATTCACGAACATCTTCTAAAA 57.839 30.769 0.00 0.00 0.00 1.52
182 183 7.737972 TCCAAATTCACGAACATCTTCTAAA 57.262 32.000 0.00 0.00 0.00 1.85
183 184 7.737972 TTCCAAATTCACGAACATCTTCTAA 57.262 32.000 0.00 0.00 0.00 2.10
184 185 7.659799 TCTTTCCAAATTCACGAACATCTTCTA 59.340 33.333 0.00 0.00 0.00 2.10
185 186 6.486657 TCTTTCCAAATTCACGAACATCTTCT 59.513 34.615 0.00 0.00 0.00 2.85
186 187 6.668323 TCTTTCCAAATTCACGAACATCTTC 58.332 36.000 0.00 0.00 0.00 2.87
187 188 6.633500 TCTTTCCAAATTCACGAACATCTT 57.367 33.333 0.00 0.00 0.00 2.40
188 189 6.633500 TTCTTTCCAAATTCACGAACATCT 57.367 33.333 0.00 0.00 0.00 2.90
189 190 7.692908 TTTTCTTTCCAAATTCACGAACATC 57.307 32.000 0.00 0.00 0.00 3.06
250 251 8.923270 TCCCTTGTTCTTTCTATTTGTTCATTT 58.077 29.630 0.00 0.00 0.00 2.32
251 252 8.477419 TCCCTTGTTCTTTCTATTTGTTCATT 57.523 30.769 0.00 0.00 0.00 2.57
252 253 8.477419 TTCCCTTGTTCTTTCTATTTGTTCAT 57.523 30.769 0.00 0.00 0.00 2.57
253 254 7.889873 TTCCCTTGTTCTTTCTATTTGTTCA 57.110 32.000 0.00 0.00 0.00 3.18
254 255 9.594478 TTTTTCCCTTGTTCTTTCTATTTGTTC 57.406 29.630 0.00 0.00 0.00 3.18
278 279 7.979537 GGTTCTAGAACATCCAAACTTGTTTTT 59.020 33.333 31.30 0.00 42.85 1.94
279 280 7.342026 AGGTTCTAGAACATCCAAACTTGTTTT 59.658 33.333 31.30 0.00 42.85 2.43
280 281 6.833933 AGGTTCTAGAACATCCAAACTTGTTT 59.166 34.615 31.30 0.00 42.85 2.83
281 282 6.365520 AGGTTCTAGAACATCCAAACTTGTT 58.634 36.000 31.30 0.00 42.85 2.83
282 283 5.941788 AGGTTCTAGAACATCCAAACTTGT 58.058 37.500 31.30 0.18 42.85 3.16
283 284 6.072452 GGAAGGTTCTAGAACATCCAAACTTG 60.072 42.308 33.49 0.00 42.99 3.16
284 285 6.004574 GGAAGGTTCTAGAACATCCAAACTT 58.995 40.000 33.49 25.68 42.99 2.66
285 286 5.515008 GGGAAGGTTCTAGAACATCCAAACT 60.515 44.000 35.99 22.86 44.16 2.66
286 287 4.700692 GGGAAGGTTCTAGAACATCCAAAC 59.299 45.833 35.99 25.20 44.16 2.93
287 288 4.352595 TGGGAAGGTTCTAGAACATCCAAA 59.647 41.667 35.99 27.89 44.16 3.28
288 289 3.913799 TGGGAAGGTTCTAGAACATCCAA 59.086 43.478 35.99 30.27 44.16 3.53
289 290 3.519510 CTGGGAAGGTTCTAGAACATCCA 59.480 47.826 35.99 29.82 44.16 3.41
290 291 3.775316 TCTGGGAAGGTTCTAGAACATCC 59.225 47.826 32.11 32.11 42.87 3.51
291 292 5.422214 TTCTGGGAAGGTTCTAGAACATC 57.578 43.478 31.30 26.62 42.85 3.06
292 293 5.561679 GTTTCTGGGAAGGTTCTAGAACAT 58.438 41.667 31.30 24.80 42.85 2.71
293 294 4.502604 CGTTTCTGGGAAGGTTCTAGAACA 60.503 45.833 31.30 13.17 42.85 3.18
294 295 3.995048 CGTTTCTGGGAAGGTTCTAGAAC 59.005 47.826 24.73 24.73 40.45 3.01
295 296 3.899360 TCGTTTCTGGGAAGGTTCTAGAA 59.101 43.478 0.00 0.00 32.64 2.10
296 297 3.503365 TCGTTTCTGGGAAGGTTCTAGA 58.497 45.455 0.00 0.00 0.00 2.43
297 298 3.955650 TCGTTTCTGGGAAGGTTCTAG 57.044 47.619 0.00 0.00 0.00 2.43
298 299 4.102054 ACTTTCGTTTCTGGGAAGGTTCTA 59.898 41.667 0.00 0.00 29.43 2.10
299 300 3.118000 ACTTTCGTTTCTGGGAAGGTTCT 60.118 43.478 0.00 0.00 29.43 3.01
300 301 3.003378 CACTTTCGTTTCTGGGAAGGTTC 59.997 47.826 0.00 0.00 31.12 3.62
301 302 2.949644 CACTTTCGTTTCTGGGAAGGTT 59.050 45.455 0.00 0.00 31.12 3.50
302 303 2.171870 TCACTTTCGTTTCTGGGAAGGT 59.828 45.455 0.00 0.00 33.40 3.50
303 304 2.808543 CTCACTTTCGTTTCTGGGAAGG 59.191 50.000 0.00 0.00 0.00 3.46
304 305 2.224314 GCTCACTTTCGTTTCTGGGAAG 59.776 50.000 0.00 0.00 0.00 3.46
305 306 2.158813 AGCTCACTTTCGTTTCTGGGAA 60.159 45.455 0.00 0.00 0.00 3.97
306 307 1.416401 AGCTCACTTTCGTTTCTGGGA 59.584 47.619 0.00 0.00 0.00 4.37
307 308 1.884235 AGCTCACTTTCGTTTCTGGG 58.116 50.000 0.00 0.00 0.00 4.45
308 309 3.654414 ACTAGCTCACTTTCGTTTCTGG 58.346 45.455 0.00 0.00 0.00 3.86
309 310 4.084328 CCAACTAGCTCACTTTCGTTTCTG 60.084 45.833 0.00 0.00 0.00 3.02
310 311 4.058817 CCAACTAGCTCACTTTCGTTTCT 58.941 43.478 0.00 0.00 0.00 2.52
311 312 3.186613 CCCAACTAGCTCACTTTCGTTTC 59.813 47.826 0.00 0.00 0.00 2.78
312 313 3.139077 CCCAACTAGCTCACTTTCGTTT 58.861 45.455 0.00 0.00 0.00 3.60
313 314 2.767505 CCCAACTAGCTCACTTTCGTT 58.232 47.619 0.00 0.00 0.00 3.85
314 315 1.608283 GCCCAACTAGCTCACTTTCGT 60.608 52.381 0.00 0.00 0.00 3.85
315 316 1.079503 GCCCAACTAGCTCACTTTCG 58.920 55.000 0.00 0.00 0.00 3.46
316 317 1.454201 GGCCCAACTAGCTCACTTTC 58.546 55.000 0.00 0.00 0.00 2.62
317 318 0.321653 CGGCCCAACTAGCTCACTTT 60.322 55.000 0.00 0.00 0.00 2.66
318 319 1.296715 CGGCCCAACTAGCTCACTT 59.703 57.895 0.00 0.00 0.00 3.16
319 320 1.913762 ACGGCCCAACTAGCTCACT 60.914 57.895 0.00 0.00 0.00 3.41
320 321 1.741770 CACGGCCCAACTAGCTCAC 60.742 63.158 0.00 0.00 0.00 3.51
321 322 2.662596 CACGGCCCAACTAGCTCA 59.337 61.111 0.00 0.00 0.00 4.26
322 323 2.820037 GCACGGCCCAACTAGCTC 60.820 66.667 0.00 0.00 0.00 4.09
323 324 2.971598 ATGCACGGCCCAACTAGCT 61.972 57.895 0.00 0.00 0.00 3.32
324 325 2.438434 ATGCACGGCCCAACTAGC 60.438 61.111 0.00 0.00 0.00 3.42
325 326 1.369091 GACATGCACGGCCCAACTAG 61.369 60.000 0.00 0.00 0.00 2.57
326 327 1.376683 GACATGCACGGCCCAACTA 60.377 57.895 0.00 0.00 0.00 2.24
327 328 2.672996 GACATGCACGGCCCAACT 60.673 61.111 0.00 0.00 0.00 3.16
328 329 2.342650 ATGACATGCACGGCCCAAC 61.343 57.895 0.00 0.00 0.00 3.77
329 330 2.035469 ATGACATGCACGGCCCAA 59.965 55.556 0.00 0.00 0.00 4.12
330 331 2.751036 CATGACATGCACGGCCCA 60.751 61.111 1.71 0.00 0.00 5.36
331 332 3.520862 CCATGACATGCACGGCCC 61.521 66.667 10.10 0.00 0.00 5.80
332 333 1.825191 ATCCATGACATGCACGGCC 60.825 57.895 10.10 0.00 27.48 6.13
333 334 1.357690 CATCCATGACATGCACGGC 59.642 57.895 10.10 0.00 27.48 5.68
334 335 1.357690 GCATCCATGACATGCACGG 59.642 57.895 19.34 0.00 45.19 4.94
338 339 1.921887 CGTTTTGCATCCATGACATGC 59.078 47.619 18.07 18.07 45.92 4.06
339 340 3.173599 GTCGTTTTGCATCCATGACATG 58.826 45.455 8.56 8.56 0.00 3.21
340 341 2.819019 TGTCGTTTTGCATCCATGACAT 59.181 40.909 9.98 0.00 30.61 3.06
341 342 2.031245 GTGTCGTTTTGCATCCATGACA 60.031 45.455 9.98 9.98 32.93 3.58
342 343 2.584791 GTGTCGTTTTGCATCCATGAC 58.415 47.619 0.00 0.00 0.00 3.06
343 344 1.539388 GGTGTCGTTTTGCATCCATGA 59.461 47.619 0.00 0.00 0.00 3.07
344 345 1.541147 AGGTGTCGTTTTGCATCCATG 59.459 47.619 0.00 0.00 0.00 3.66
345 346 1.812571 GAGGTGTCGTTTTGCATCCAT 59.187 47.619 0.00 0.00 0.00 3.41
346 347 1.202758 AGAGGTGTCGTTTTGCATCCA 60.203 47.619 0.00 0.00 0.00 3.41
347 348 1.464997 GAGAGGTGTCGTTTTGCATCC 59.535 52.381 0.00 0.00 0.00 3.51
348 349 1.126846 CGAGAGGTGTCGTTTTGCATC 59.873 52.381 0.00 0.00 35.14 3.91
349 350 1.148310 CGAGAGGTGTCGTTTTGCAT 58.852 50.000 0.00 0.00 35.14 3.96
350 351 1.495584 GCGAGAGGTGTCGTTTTGCA 61.496 55.000 0.00 0.00 42.17 4.08
351 352 1.204312 GCGAGAGGTGTCGTTTTGC 59.796 57.895 0.00 0.00 42.17 3.68
352 353 1.860078 GGCGAGAGGTGTCGTTTTG 59.140 57.895 0.00 0.00 42.17 2.44
353 354 1.663702 CGGCGAGAGGTGTCGTTTT 60.664 57.895 0.00 0.00 42.17 2.43
354 355 2.049433 CGGCGAGAGGTGTCGTTT 60.049 61.111 0.00 0.00 42.17 3.60
355 356 2.473664 CTTCGGCGAGAGGTGTCGTT 62.474 60.000 10.46 0.00 42.17 3.85
356 357 2.979197 CTTCGGCGAGAGGTGTCGT 61.979 63.158 10.46 0.00 42.17 4.34
357 358 2.202492 CTTCGGCGAGAGGTGTCG 60.202 66.667 10.46 0.00 43.08 4.35
358 359 2.507324 GCTTCGGCGAGAGGTGTC 60.507 66.667 10.46 0.00 0.00 3.67
359 360 2.867855 TTGCTTCGGCGAGAGGTGT 61.868 57.895 10.46 0.00 45.37 4.16
360 361 2.048222 TTGCTTCGGCGAGAGGTG 60.048 61.111 10.46 0.74 45.37 4.00
375 376 0.037326 TCTACAAGAGGCACGGCTTG 60.037 55.000 0.00 0.00 45.89 4.01
376 377 0.685097 TTCTACAAGAGGCACGGCTT 59.315 50.000 0.00 0.00 0.00 4.35
377 378 0.247736 CTTCTACAAGAGGCACGGCT 59.752 55.000 0.00 0.00 0.00 5.52
378 379 0.741221 CCTTCTACAAGAGGCACGGC 60.741 60.000 0.00 0.00 0.00 5.68
379 380 0.895530 TCCTTCTACAAGAGGCACGG 59.104 55.000 0.00 0.00 0.00 4.94
380 381 1.819288 TCTCCTTCTACAAGAGGCACG 59.181 52.381 0.00 0.00 0.00 5.34
381 382 3.963428 TTCTCCTTCTACAAGAGGCAC 57.037 47.619 0.00 0.00 0.00 5.01
382 383 4.974645 TTTTCTCCTTCTACAAGAGGCA 57.025 40.909 0.00 0.00 0.00 4.75
417 418 3.253188 CCATGCCTCTCTGAAACGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
418 419 2.813754 CCATGCCTCTCTGAAACGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
419 420 2.426522 CCATGCCTCTCTGAAACGAAA 58.573 47.619 0.00 0.00 0.00 3.46
420 421 1.945819 GCCATGCCTCTCTGAAACGAA 60.946 52.381 0.00 0.00 0.00 3.85
421 422 0.391661 GCCATGCCTCTCTGAAACGA 60.392 55.000 0.00 0.00 0.00 3.85
422 423 1.699656 CGCCATGCCTCTCTGAAACG 61.700 60.000 0.00 0.00 0.00 3.60
423 424 0.674895 ACGCCATGCCTCTCTGAAAC 60.675 55.000 0.00 0.00 0.00 2.78
424 425 0.674581 CACGCCATGCCTCTCTGAAA 60.675 55.000 0.00 0.00 0.00 2.69
425 426 1.078918 CACGCCATGCCTCTCTGAA 60.079 57.895 0.00 0.00 0.00 3.02
426 427 2.230994 GACACGCCATGCCTCTCTGA 62.231 60.000 0.00 0.00 0.00 3.27
427 428 1.812922 GACACGCCATGCCTCTCTG 60.813 63.158 0.00 0.00 0.00 3.35
428 429 1.954362 GAGACACGCCATGCCTCTCT 61.954 60.000 0.00 0.00 0.00 3.10
429 430 1.520342 GAGACACGCCATGCCTCTC 60.520 63.158 0.00 0.00 0.00 3.20
430 431 1.986757 AGAGACACGCCATGCCTCT 60.987 57.895 0.00 0.00 0.00 3.69
431 432 1.812922 CAGAGACACGCCATGCCTC 60.813 63.158 0.00 0.00 0.00 4.70
432 433 2.267006 CAGAGACACGCCATGCCT 59.733 61.111 0.00 0.00 0.00 4.75
433 434 2.821366 CCAGAGACACGCCATGCC 60.821 66.667 0.00 0.00 0.00 4.40
434 435 3.503363 GCCAGAGACACGCCATGC 61.503 66.667 0.00 0.00 0.00 4.06
435 436 3.190849 CGCCAGAGACACGCCATG 61.191 66.667 0.00 0.00 0.00 3.66
436 437 4.457496 CCGCCAGAGACACGCCAT 62.457 66.667 0.00 0.00 0.00 4.40
438 439 4.373116 TTCCGCCAGAGACACGCC 62.373 66.667 0.00 0.00 0.00 5.68
439 440 2.811317 CTTCCGCCAGAGACACGC 60.811 66.667 0.00 0.00 0.00 5.34
440 441 2.811317 GCTTCCGCCAGAGACACG 60.811 66.667 0.00 0.00 0.00 4.49
441 442 0.884704 TTTGCTTCCGCCAGAGACAC 60.885 55.000 0.00 0.00 34.43 3.67
442 443 0.179032 TTTTGCTTCCGCCAGAGACA 60.179 50.000 0.00 0.00 34.43 3.41
443 444 0.238553 GTTTTGCTTCCGCCAGAGAC 59.761 55.000 0.00 0.00 34.43 3.36
444 445 0.889186 GGTTTTGCTTCCGCCAGAGA 60.889 55.000 0.00 0.00 34.43 3.10
445 446 1.581447 GGTTTTGCTTCCGCCAGAG 59.419 57.895 0.00 0.00 34.43 3.35
446 447 1.901464 GGGTTTTGCTTCCGCCAGA 60.901 57.895 0.00 0.00 34.43 3.86
447 448 1.903404 AGGGTTTTGCTTCCGCCAG 60.903 57.895 0.00 0.00 34.43 4.85
448 449 2.197324 AGGGTTTTGCTTCCGCCA 59.803 55.556 0.00 0.00 34.43 5.69
449 450 2.650778 CAGGGTTTTGCTTCCGCC 59.349 61.111 0.00 0.00 34.43 6.13
450 451 2.049156 GCAGGGTTTTGCTTCCGC 60.049 61.111 0.00 0.00 40.89 5.54
451 452 1.866853 GAGGCAGGGTTTTGCTTCCG 61.867 60.000 0.00 0.00 42.44 4.30
452 453 1.967535 GAGGCAGGGTTTTGCTTCC 59.032 57.895 0.00 0.00 42.44 3.46
453 454 0.884514 GAGAGGCAGGGTTTTGCTTC 59.115 55.000 2.35 2.35 46.89 3.86
454 455 0.890996 CGAGAGGCAGGGTTTTGCTT 60.891 55.000 0.00 0.00 43.57 3.91
455 456 1.302832 CGAGAGGCAGGGTTTTGCT 60.303 57.895 0.00 0.00 43.57 3.91
456 457 2.982744 GCGAGAGGCAGGGTTTTGC 61.983 63.158 0.00 0.00 42.87 3.68
457 458 3.267974 GCGAGAGGCAGGGTTTTG 58.732 61.111 0.00 0.00 42.87 2.44
520 521 7.542824 CACCGGTCTTTCTTAACTTTTGAAAAA 59.457 33.333 2.59 0.00 30.67 1.94
521 522 7.030768 CACCGGTCTTTCTTAACTTTTGAAAA 58.969 34.615 2.59 0.00 30.67 2.29
522 523 6.374894 TCACCGGTCTTTCTTAACTTTTGAAA 59.625 34.615 2.59 0.00 0.00 2.69
523 524 5.881443 TCACCGGTCTTTCTTAACTTTTGAA 59.119 36.000 2.59 0.00 0.00 2.69
524 525 5.430007 TCACCGGTCTTTCTTAACTTTTGA 58.570 37.500 2.59 0.00 0.00 2.69
525 526 5.744666 TCACCGGTCTTTCTTAACTTTTG 57.255 39.130 2.59 0.00 0.00 2.44
526 527 6.762702 TTTCACCGGTCTTTCTTAACTTTT 57.237 33.333 2.59 0.00 0.00 2.27
527 528 6.762702 TTTTCACCGGTCTTTCTTAACTTT 57.237 33.333 2.59 0.00 0.00 2.66
528 529 6.762702 TTTTTCACCGGTCTTTCTTAACTT 57.237 33.333 2.59 0.00 0.00 2.66
529 530 6.544564 TGATTTTTCACCGGTCTTTCTTAACT 59.455 34.615 2.59 0.00 0.00 2.24
530 531 6.731164 TGATTTTTCACCGGTCTTTCTTAAC 58.269 36.000 2.59 0.00 0.00 2.01
531 532 6.945938 TGATTTTTCACCGGTCTTTCTTAA 57.054 33.333 2.59 0.00 0.00 1.85
532 533 6.945938 TTGATTTTTCACCGGTCTTTCTTA 57.054 33.333 2.59 0.00 0.00 2.10
533 534 5.845391 TTGATTTTTCACCGGTCTTTCTT 57.155 34.783 2.59 0.00 0.00 2.52
534 535 5.845391 TTTGATTTTTCACCGGTCTTTCT 57.155 34.783 2.59 0.00 0.00 2.52
535 536 6.563939 GCATTTTGATTTTTCACCGGTCTTTC 60.564 38.462 2.59 0.00 0.00 2.62
536 537 5.236263 GCATTTTGATTTTTCACCGGTCTTT 59.764 36.000 2.59 0.00 0.00 2.52
537 538 4.749598 GCATTTTGATTTTTCACCGGTCTT 59.250 37.500 2.59 0.00 0.00 3.01
538 539 4.306600 GCATTTTGATTTTTCACCGGTCT 58.693 39.130 2.59 0.00 0.00 3.85
539 540 3.431912 GGCATTTTGATTTTTCACCGGTC 59.568 43.478 2.59 0.00 0.00 4.79
540 541 3.181461 TGGCATTTTGATTTTTCACCGGT 60.181 39.130 0.00 0.00 0.00 5.28
541 542 3.397482 TGGCATTTTGATTTTTCACCGG 58.603 40.909 0.00 0.00 0.00 5.28
542 543 5.415415 TTTGGCATTTTGATTTTTCACCG 57.585 34.783 0.00 0.00 0.00 4.94
574 575 3.128465 TCGTACGCGTTTTTGGTTTTT 57.872 38.095 20.78 0.00 39.49 1.94
575 576 2.821307 TCGTACGCGTTTTTGGTTTT 57.179 40.000 20.78 0.00 39.49 2.43
576 577 2.821307 TTCGTACGCGTTTTTGGTTT 57.179 40.000 20.78 0.00 39.49 3.27
577 578 2.821307 TTTCGTACGCGTTTTTGGTT 57.179 40.000 20.78 0.00 39.49 3.67
578 579 2.821307 TTTTCGTACGCGTTTTTGGT 57.179 40.000 20.78 0.00 39.49 3.67
579 580 3.352652 TCTTTTTCGTACGCGTTTTTGG 58.647 40.909 20.78 2.41 39.49 3.28
580 581 4.977414 TTCTTTTTCGTACGCGTTTTTG 57.023 36.364 20.78 5.10 39.49 2.44
581 582 5.495257 CGTTTTCTTTTTCGTACGCGTTTTT 60.495 36.000 20.78 0.00 39.49 1.94
582 583 4.029388 CGTTTTCTTTTTCGTACGCGTTTT 60.029 37.500 20.78 0.00 39.49 2.43
583 584 3.474608 CGTTTTCTTTTTCGTACGCGTTT 59.525 39.130 20.78 0.00 39.49 3.60
584 585 3.021609 CGTTTTCTTTTTCGTACGCGTT 58.978 40.909 20.78 0.80 39.49 4.84
585 586 2.597272 CCGTTTTCTTTTTCGTACGCGT 60.597 45.455 19.17 19.17 39.49 6.01
586 587 1.957897 CCGTTTTCTTTTTCGTACGCG 59.042 47.619 11.24 3.53 39.92 6.01
587 588 1.705041 GCCGTTTTCTTTTTCGTACGC 59.295 47.619 11.24 0.00 0.00 4.42
588 589 2.962191 CTGCCGTTTTCTTTTTCGTACG 59.038 45.455 9.53 9.53 0.00 3.67
589 590 3.002553 TCCTGCCGTTTTCTTTTTCGTAC 59.997 43.478 0.00 0.00 0.00 3.67
590 591 3.002553 GTCCTGCCGTTTTCTTTTTCGTA 59.997 43.478 0.00 0.00 0.00 3.43
591 592 2.018515 TCCTGCCGTTTTCTTTTTCGT 58.981 42.857 0.00 0.00 0.00 3.85
592 593 2.381589 GTCCTGCCGTTTTCTTTTTCG 58.618 47.619 0.00 0.00 0.00 3.46
593 594 2.381589 CGTCCTGCCGTTTTCTTTTTC 58.618 47.619 0.00 0.00 0.00 2.29
594 595 1.535226 GCGTCCTGCCGTTTTCTTTTT 60.535 47.619 0.00 0.00 37.76 1.94
595 596 0.030235 GCGTCCTGCCGTTTTCTTTT 59.970 50.000 0.00 0.00 37.76 2.27
596 597 1.652563 GCGTCCTGCCGTTTTCTTT 59.347 52.632 0.00 0.00 37.76 2.52
597 598 3.340789 GCGTCCTGCCGTTTTCTT 58.659 55.556 0.00 0.00 37.76 2.52
635 636 4.724602 TCACTCGCGCTCAGCCAC 62.725 66.667 5.56 0.00 44.76 5.01
636 637 4.724602 GTCACTCGCGCTCAGCCA 62.725 66.667 5.56 0.00 44.76 4.75
646 647 2.575525 CTGAGAGCGCGTCACTCG 60.576 66.667 8.43 6.69 39.23 4.18
647 648 2.878520 GCTGAGAGCGCGTCACTC 60.879 66.667 8.43 13.76 33.68 3.51
648 649 4.427661 GGCTGAGAGCGCGTCACT 62.428 66.667 8.43 3.88 43.62 3.41
649 650 4.427661 AGGCTGAGAGCGCGTCAC 62.428 66.667 8.43 3.59 43.62 3.67
650 651 4.121669 GAGGCTGAGAGCGCGTCA 62.122 66.667 8.43 13.87 43.62 4.35
651 652 4.863925 GGAGGCTGAGAGCGCGTC 62.864 72.222 8.43 3.41 43.62 5.19
654 655 2.835431 TAGGGAGGCTGAGAGCGC 60.835 66.667 0.00 0.00 43.62 5.92
655 656 0.539438 ATCTAGGGAGGCTGAGAGCG 60.539 60.000 0.00 0.00 43.62 5.03
656 657 0.968405 CATCTAGGGAGGCTGAGAGC 59.032 60.000 0.00 0.00 41.46 4.09
657 658 2.238521 GTCATCTAGGGAGGCTGAGAG 58.761 57.143 0.00 0.00 0.00 3.20
658 659 1.133325 GGTCATCTAGGGAGGCTGAGA 60.133 57.143 0.00 0.00 0.00 3.27
659 660 1.337118 GGTCATCTAGGGAGGCTGAG 58.663 60.000 0.00 0.00 0.00 3.35
660 661 0.105453 GGGTCATCTAGGGAGGCTGA 60.105 60.000 0.00 0.00 0.00 4.26
661 662 0.105246 AGGGTCATCTAGGGAGGCTG 60.105 60.000 0.00 0.00 0.00 4.85
662 663 0.644937 AAGGGTCATCTAGGGAGGCT 59.355 55.000 0.00 0.00 0.00 4.58
663 664 0.761802 CAAGGGTCATCTAGGGAGGC 59.238 60.000 0.00 0.00 0.00 4.70
664 665 0.761802 GCAAGGGTCATCTAGGGAGG 59.238 60.000 0.00 0.00 0.00 4.30
665 666 1.415659 CTGCAAGGGTCATCTAGGGAG 59.584 57.143 0.00 0.00 0.00 4.30
666 667 1.500474 CTGCAAGGGTCATCTAGGGA 58.500 55.000 0.00 0.00 0.00 4.20
679 680 0.731417 CTCATTCGGAAGCCTGCAAG 59.269 55.000 0.00 0.00 0.00 4.01
680 681 1.308069 GCTCATTCGGAAGCCTGCAA 61.308 55.000 0.00 0.00 0.00 4.08
681 682 1.746615 GCTCATTCGGAAGCCTGCA 60.747 57.895 0.00 0.00 0.00 4.41
682 683 1.746615 TGCTCATTCGGAAGCCTGC 60.747 57.895 0.00 0.00 0.00 4.85
683 684 0.392193 AGTGCTCATTCGGAAGCCTG 60.392 55.000 0.00 0.00 0.00 4.85
684 685 0.107945 GAGTGCTCATTCGGAAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
685 686 1.424493 CGAGTGCTCATTCGGAAGCC 61.424 60.000 6.85 0.00 36.98 4.35
686 687 0.737715 ACGAGTGCTCATTCGGAAGC 60.738 55.000 16.87 0.00 43.52 3.86
687 688 1.714794 AACGAGTGCTCATTCGGAAG 58.285 50.000 16.87 0.00 43.52 3.46
688 689 2.230508 ACTAACGAGTGCTCATTCGGAA 59.769 45.455 16.87 0.00 43.52 4.30
689 690 1.816835 ACTAACGAGTGCTCATTCGGA 59.183 47.619 16.87 5.84 43.52 4.55
690 691 2.279582 ACTAACGAGTGCTCATTCGG 57.720 50.000 16.87 4.45 43.52 4.30
691 692 4.263209 CACTAACTAACGAGTGCTCATTCG 59.737 45.833 12.20 12.20 44.55 3.34
692 693 4.563184 CCACTAACTAACGAGTGCTCATTC 59.437 45.833 0.00 0.00 41.48 2.67
693 694 4.495422 CCACTAACTAACGAGTGCTCATT 58.505 43.478 0.00 0.00 41.48 2.57
694 695 3.676324 GCCACTAACTAACGAGTGCTCAT 60.676 47.826 0.00 0.00 41.48 2.90
695 696 2.352421 GCCACTAACTAACGAGTGCTCA 60.352 50.000 0.00 0.00 41.48 4.26
696 697 2.094649 AGCCACTAACTAACGAGTGCTC 60.095 50.000 0.00 0.00 41.48 4.26
697 698 1.893801 AGCCACTAACTAACGAGTGCT 59.106 47.619 0.00 0.00 41.48 4.40
698 699 2.094649 AGAGCCACTAACTAACGAGTGC 60.095 50.000 0.00 0.00 41.48 4.40
699 700 3.728268 CGAGAGCCACTAACTAACGAGTG 60.728 52.174 0.00 0.00 42.29 3.51
700 701 2.419324 CGAGAGCCACTAACTAACGAGT 59.581 50.000 0.00 0.00 37.59 4.18
701 702 3.054276 CGAGAGCCACTAACTAACGAG 57.946 52.381 0.00 0.00 0.00 4.18
716 717 4.464262 GCCCCTATTTGGCGAGAG 57.536 61.111 0.00 0.00 39.48 3.20
728 729 1.831286 CTATACGACGGGTGCCCCT 60.831 63.158 8.43 0.00 42.67 4.79
730 731 2.732658 CCTATACGACGGGTGCCC 59.267 66.667 0.00 0.00 0.00 5.36
764 765 7.174946 TCTCAAAAAGAAAAGCCCTATACACAG 59.825 37.037 0.00 0.00 0.00 3.66
926 927 1.227292 GCTCCGTCCTCCGAATTCC 60.227 63.158 0.00 0.00 39.56 3.01
1070 1071 3.726517 CGAGCTTGTGTTGGGCGG 61.727 66.667 0.00 0.00 0.00 6.13
1095 1096 4.095400 AGTGGGAGGGAGGCGGAT 62.095 66.667 0.00 0.00 0.00 4.18
1416 1417 6.624204 GCGGTAATTATTTTAGGTGTTGCAGT 60.624 38.462 0.00 0.00 0.00 4.40
1441 1442 8.590339 TTACGCGTTGCTGTTATTAATTTTAG 57.410 30.769 20.78 0.00 0.00 1.85
1608 1635 3.446968 TGCAACTAGGAAGCTACCCTAA 58.553 45.455 13.79 0.00 35.98 2.69
1612 1639 3.611766 TCTTGCAACTAGGAAGCTACC 57.388 47.619 0.00 0.00 44.51 3.18
1613 1640 4.143094 CGTTTCTTGCAACTAGGAAGCTAC 60.143 45.833 0.00 0.00 44.51 3.58
1615 1642 2.808543 CGTTTCTTGCAACTAGGAAGCT 59.191 45.455 0.00 0.00 44.51 3.74
1616 1643 2.806244 TCGTTTCTTGCAACTAGGAAGC 59.194 45.455 0.00 0.00 44.51 3.86
1929 1976 1.673920 TGATATGCACTCACGTAGCGA 59.326 47.619 0.00 0.00 0.00 4.93
2089 2136 5.132897 TCCAATTTCTTGTGTAATGGCAC 57.867 39.130 0.00 0.00 39.65 5.01
2178 2225 6.997239 AAGAAACGGGATAAGGAATACAAC 57.003 37.500 0.00 0.00 0.00 3.32
2179 2226 8.081517 TCTAAGAAACGGGATAAGGAATACAA 57.918 34.615 0.00 0.00 0.00 2.41
2185 2232 4.261909 GCGATCTAAGAAACGGGATAAGGA 60.262 45.833 0.00 0.00 0.00 3.36
2197 2244 5.874261 TCAAACATGATGTGCGATCTAAGAA 59.126 36.000 0.00 0.00 0.00 2.52
2237 2284 8.372459 TCATGTTGTACTATTTTCAGGTGTACT 58.628 33.333 0.00 0.00 35.76 2.73
2238 2285 8.542497 TCATGTTGTACTATTTTCAGGTGTAC 57.458 34.615 0.00 0.00 35.43 2.90
2239 2286 9.161629 CATCATGTTGTACTATTTTCAGGTGTA 57.838 33.333 0.00 0.00 0.00 2.90
2240 2287 7.665559 ACATCATGTTGTACTATTTTCAGGTGT 59.334 33.333 7.65 0.00 0.00 4.16
2241 2288 8.044060 ACATCATGTTGTACTATTTTCAGGTG 57.956 34.615 7.65 0.00 0.00 4.00
2242 2289 9.905713 ATACATCATGTTGTACTATTTTCAGGT 57.094 29.630 16.87 0.00 35.04 4.00
2326 2388 3.135994 GTTTACGTTCAGAAGCCTTCCA 58.864 45.455 0.00 0.00 0.00 3.53
2691 2837 6.478512 TTGCCATACACACTATGATAGTCA 57.521 37.500 1.33 0.00 36.76 3.41
2812 2958 1.078848 GCATCAGAACCCTCGCTGT 60.079 57.895 0.00 0.00 33.90 4.40
2846 2992 2.221981 GCTCTCGTGTGTCCAAAAGAAG 59.778 50.000 0.00 0.00 0.00 2.85
2890 3036 2.369860 TGGTGACATGCTTCAGTCTTCT 59.630 45.455 0.00 0.00 35.81 2.85
3009 3155 5.593909 TGAACTCATGGTGTTGACAAGAAAT 59.406 36.000 9.18 0.00 0.00 2.17
3210 3357 4.742138 GCCTGTAAATTCAAGCAACCCAAA 60.742 41.667 0.00 0.00 0.00 3.28
3217 3364 4.870123 ATGTTGCCTGTAAATTCAAGCA 57.130 36.364 0.00 0.00 33.70 3.91
3221 3368 5.534278 TCTCACAATGTTGCCTGTAAATTCA 59.466 36.000 0.00 0.00 0.00 2.57
3307 3496 4.948608 TTGAAGCGAGTGTTTGTGTTTA 57.051 36.364 0.00 0.00 0.00 2.01
3368 3557 1.070105 TCGCTGTAAAACGCTGGGT 59.930 52.632 0.00 0.00 0.00 4.51
3447 3636 4.176271 GCCAACCAAATGCTATCTTCAAC 58.824 43.478 0.00 0.00 0.00 3.18
3488 3677 2.401766 GGATGCCCAGTTGCACTCG 61.402 63.158 0.00 0.00 45.48 4.18
3791 3989 6.594788 TTCTCCTTTTGATGGAATTCCTTG 57.405 37.500 24.73 6.83 36.82 3.61
3796 3994 6.664816 TGTATGCTTCTCCTTTTGATGGAATT 59.335 34.615 0.00 0.00 32.61 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.