Multiple sequence alignment - TraesCS7D01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G277900 chr7D 100.000 4253 0 0 1 4253 266899502 266895250 0.000000e+00 7854.0
1 TraesCS7D01G277900 chr7D 87.379 206 23 1 4048 4253 54149160 54149362 2.560000e-57 233.0
2 TraesCS7D01G277900 chr7D 98.113 53 1 0 2409 2461 266897042 266896990 4.530000e-15 93.5
3 TraesCS7D01G277900 chr7D 98.113 53 1 0 2461 2513 266897094 266897042 4.530000e-15 93.5
4 TraesCS7D01G277900 chr7B 95.362 2501 50 19 1 2458 247242896 247245373 0.000000e+00 3916.0
5 TraesCS7D01G277900 chr7B 96.226 1484 35 11 2461 3929 247245324 247246801 0.000000e+00 2410.0
6 TraesCS7D01G277900 chr7A 95.231 1426 37 7 1 1397 292851667 292850244 0.000000e+00 2228.0
7 TraesCS7D01G277900 chr7A 97.207 1074 20 8 1394 2461 292850152 292849083 0.000000e+00 1808.0
8 TraesCS7D01G277900 chr7A 97.011 1037 25 4 2461 3492 292849135 292848100 0.000000e+00 1738.0
9 TraesCS7D01G277900 chr7A 91.648 455 26 3 3487 3933 292848053 292847603 1.680000e-173 619.0
10 TraesCS7D01G277900 chr7A 86.700 203 25 2 4052 4253 562903639 562903840 1.540000e-54 224.0
11 TraesCS7D01G277900 chr7A 100.000 36 0 0 3527 3562 292848087 292848052 2.740000e-07 67.6
12 TraesCS7D01G277900 chr2A 89.163 203 21 1 4051 4253 628054827 628055028 7.060000e-63 252.0
13 TraesCS7D01G277900 chr2A 86.829 205 25 2 4050 4253 285679112 285678909 1.190000e-55 228.0
14 TraesCS7D01G277900 chr2B 88.725 204 23 0 4050 4253 78089496 78089293 2.540000e-62 250.0
15 TraesCS7D01G277900 chr2D 88.614 202 21 1 4054 4253 425215009 425214808 1.180000e-60 244.0
16 TraesCS7D01G277900 chr6D 87.745 204 25 0 4050 4253 427975520 427975317 5.500000e-59 239.0
17 TraesCS7D01G277900 chr1B 86.634 202 27 0 4052 4253 541401151 541401352 1.540000e-54 224.0
18 TraesCS7D01G277900 chr3A 86.700 203 24 2 4051 4253 27684994 27685193 5.530000e-54 222.0
19 TraesCS7D01G277900 chr1D 89.552 67 4 2 3816 3882 468820 468883 9.800000e-12 82.4
20 TraesCS7D01G277900 chr1A 88.060 67 5 2 3816 3882 3466083 3466020 4.560000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G277900 chr7D 266895250 266899502 4252 True 2680.333333 7854 98.7420 1 4253 3 chr7D.!!$R1 4252
1 TraesCS7D01G277900 chr7B 247242896 247246801 3905 False 3163.000000 3916 95.7940 1 3929 2 chr7B.!!$F1 3928
2 TraesCS7D01G277900 chr7A 292847603 292851667 4064 True 1292.120000 2228 96.2194 1 3933 5 chr7A.!!$R1 3932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 241 1.616327 CATCCACCTCCCTCCCACA 60.616 63.158 0.00 0.00 0.00 4.17 F
1582 1721 0.727970 CTGCAGATGAAGCTGAGCAC 59.272 55.000 8.42 0.38 38.14 4.40 F
1633 1772 0.841961 ATGCTGGCATCCTTAGCTCA 59.158 50.000 1.86 0.00 38.25 4.26 F
2421 2566 3.180891 TCACACCAACACACGAATACA 57.819 42.857 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 1781 0.107897 AATGGGCGACTTACGATGCA 60.108 50.0 0.0 0.00 45.77 3.96 R
2439 2584 1.644509 TGTCTTCTCAGGCTAGCCAA 58.355 50.0 34.7 21.10 38.92 4.52 R
2440 2585 1.871418 ATGTCTTCTCAGGCTAGCCA 58.129 50.0 34.7 15.14 38.92 4.75 R
4079 4295 0.035056 TTTTGCTCTCCTGGCTAGGC 60.035 55.0 12.1 9.85 44.22 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 241 1.616327 CATCCACCTCCCTCCCACA 60.616 63.158 0.00 0.00 0.00 4.17
313 322 3.906720 ACCAATCGGTAACTGTGCTAT 57.093 42.857 0.00 0.00 46.71 2.97
360 369 4.827284 CCCTCCCGTTTCAGCAATATATTT 59.173 41.667 0.00 0.00 0.00 1.40
361 370 5.278463 CCCTCCCGTTTCAGCAATATATTTG 60.278 44.000 0.00 0.00 0.00 2.32
483 492 2.544685 CGTTTCCTCTGCGAATCTGAT 58.455 47.619 0.00 0.00 0.00 2.90
489 498 4.876125 TCCTCTGCGAATCTGATACATTC 58.124 43.478 0.00 0.00 0.00 2.67
547 556 2.022195 CGTCTCGGTTTAGATCTCCCA 58.978 52.381 0.00 0.00 0.00 4.37
590 599 5.056480 TGCGAACTGTAGATATGGAATTGG 58.944 41.667 0.00 0.00 0.00 3.16
646 655 2.804527 GGGTCGTTACAGTCCTGTTTTC 59.195 50.000 5.10 0.00 41.83 2.29
647 656 2.804527 GGTCGTTACAGTCCTGTTTTCC 59.195 50.000 5.10 0.00 41.83 3.13
756 766 5.755409 TTCTAATCTGAAGTAACTGCCCA 57.245 39.130 0.00 0.00 0.00 5.36
801 832 4.406069 CTTGACGTTGCAACATATCCTTG 58.594 43.478 28.01 12.18 0.00 3.61
1173 1204 4.813027 TCCACGGTTGTACTGAAGTTATC 58.187 43.478 0.00 0.00 0.00 1.75
1228 1269 5.126061 CCTTGGCATGCTTAGTCTGTATTTT 59.874 40.000 18.92 0.00 0.00 1.82
1582 1721 0.727970 CTGCAGATGAAGCTGAGCAC 59.272 55.000 8.42 0.38 38.14 4.40
1591 1730 4.389576 GCTGAGCACGGTTTGGCG 62.390 66.667 0.00 0.00 34.54 5.69
1633 1772 0.841961 ATGCTGGCATCCTTAGCTCA 59.158 50.000 1.86 0.00 38.25 4.26
1642 1781 5.191124 TGGCATCCTTAGCTCATATGATCAT 59.809 40.000 13.81 13.81 0.00 2.45
1712 1851 7.158697 AGCTATGTGTTTAGTGTGTCACATTA 58.841 34.615 9.31 6.52 45.30 1.90
2118 2259 4.113354 CTCAGCCTTATCACGAAGGTAAC 58.887 47.826 4.23 0.00 46.73 2.50
2122 2263 5.354234 CAGCCTTATCACGAAGGTAACAATT 59.646 40.000 4.23 0.00 46.73 2.32
2358 2503 6.798427 ATTCTCTCTCAGTACCTGCATTAA 57.202 37.500 0.00 0.00 0.00 1.40
2421 2566 3.180891 TCACACCAACACACGAATACA 57.819 42.857 0.00 0.00 0.00 2.29
2422 2567 3.734463 TCACACCAACACACGAATACAT 58.266 40.909 0.00 0.00 0.00 2.29
2423 2568 4.130857 TCACACCAACACACGAATACATT 58.869 39.130 0.00 0.00 0.00 2.71
2424 2569 4.212425 TCACACCAACACACGAATACATTC 59.788 41.667 0.00 0.00 0.00 2.67
2425 2570 3.500680 ACACCAACACACGAATACATTCC 59.499 43.478 0.00 0.00 33.28 3.01
2426 2571 3.500299 CACCAACACACGAATACATTCCA 59.500 43.478 0.00 0.00 33.28 3.53
2427 2572 3.500680 ACCAACACACGAATACATTCCAC 59.499 43.478 0.00 0.00 33.28 4.02
2428 2573 3.500299 CCAACACACGAATACATTCCACA 59.500 43.478 0.00 0.00 33.28 4.17
2429 2574 4.023622 CCAACACACGAATACATTCCACAA 60.024 41.667 0.00 0.00 33.28 3.33
2430 2575 5.335583 CCAACACACGAATACATTCCACAAT 60.336 40.000 0.00 0.00 33.28 2.71
2431 2576 5.957842 ACACACGAATACATTCCACAATT 57.042 34.783 0.00 0.00 33.28 2.32
2432 2577 7.301789 CAACACACGAATACATTCCACAATTA 58.698 34.615 0.00 0.00 33.28 1.40
2433 2578 7.072177 ACACACGAATACATTCCACAATTAG 57.928 36.000 0.00 0.00 33.28 1.73
2434 2579 6.093495 ACACACGAATACATTCCACAATTAGG 59.907 38.462 0.00 0.00 33.28 2.69
2435 2580 6.315144 CACACGAATACATTCCACAATTAGGA 59.685 38.462 0.00 0.00 33.28 2.94
2436 2581 7.012327 CACACGAATACATTCCACAATTAGGAT 59.988 37.037 0.00 0.00 34.56 3.24
2437 2582 7.556275 ACACGAATACATTCCACAATTAGGATT 59.444 33.333 0.00 0.00 34.56 3.01
2438 2583 8.405531 CACGAATACATTCCACAATTAGGATTT 58.594 33.333 0.00 0.00 34.56 2.17
2439 2584 8.966868 ACGAATACATTCCACAATTAGGATTTT 58.033 29.630 0.00 0.00 34.56 1.82
2440 2585 9.801873 CGAATACATTCCACAATTAGGATTTTT 57.198 29.630 0.07 0.00 34.56 1.94
2442 2587 9.889128 AATACATTCCACAATTAGGATTTTTGG 57.111 29.630 0.07 0.00 34.56 3.28
2443 2588 6.172630 ACATTCCACAATTAGGATTTTTGGC 58.827 36.000 0.07 0.00 34.56 4.52
2444 2589 6.013466 ACATTCCACAATTAGGATTTTTGGCT 60.013 34.615 0.07 0.00 34.56 4.75
2445 2590 7.180051 ACATTCCACAATTAGGATTTTTGGCTA 59.820 33.333 0.07 0.00 34.56 3.93
2446 2591 6.773976 TCCACAATTAGGATTTTTGGCTAG 57.226 37.500 0.00 0.00 30.60 3.42
2447 2592 5.127031 TCCACAATTAGGATTTTTGGCTAGC 59.873 40.000 6.04 6.04 30.60 3.42
2448 2593 5.351458 CACAATTAGGATTTTTGGCTAGCC 58.649 41.667 27.71 27.71 0.00 3.93
2449 2594 5.127682 CACAATTAGGATTTTTGGCTAGCCT 59.872 40.000 33.07 14.04 36.94 4.58
2450 2595 5.127682 ACAATTAGGATTTTTGGCTAGCCTG 59.872 40.000 33.07 20.02 36.94 4.85
2451 2596 4.584638 TTAGGATTTTTGGCTAGCCTGA 57.415 40.909 33.07 19.55 36.94 3.86
2452 2597 3.010200 AGGATTTTTGGCTAGCCTGAG 57.990 47.619 33.07 0.00 36.94 3.35
2453 2598 2.578021 AGGATTTTTGGCTAGCCTGAGA 59.422 45.455 33.07 17.34 36.94 3.27
2454 2599 3.010584 AGGATTTTTGGCTAGCCTGAGAA 59.989 43.478 33.07 21.93 36.94 2.87
2455 2600 3.379688 GGATTTTTGGCTAGCCTGAGAAG 59.620 47.826 33.07 0.00 36.94 2.85
2456 2601 3.788227 TTTTTGGCTAGCCTGAGAAGA 57.212 42.857 33.07 12.59 36.94 2.87
2457 2602 2.770164 TTTGGCTAGCCTGAGAAGAC 57.230 50.000 33.07 5.09 36.94 3.01
2458 2603 1.644509 TTGGCTAGCCTGAGAAGACA 58.355 50.000 33.07 7.98 36.94 3.41
2459 2604 1.871418 TGGCTAGCCTGAGAAGACAT 58.129 50.000 33.07 0.00 36.94 3.06
2460 2605 3.032265 TGGCTAGCCTGAGAAGACATA 57.968 47.619 33.07 6.61 36.94 2.29
2461 2606 3.374764 TGGCTAGCCTGAGAAGACATAA 58.625 45.455 33.07 6.39 36.94 1.90
2462 2607 3.133003 TGGCTAGCCTGAGAAGACATAAC 59.867 47.826 33.07 2.43 36.94 1.89
2463 2608 3.133003 GGCTAGCCTGAGAAGACATAACA 59.867 47.826 27.17 0.00 0.00 2.41
2464 2609 4.116238 GCTAGCCTGAGAAGACATAACAC 58.884 47.826 2.29 0.00 0.00 3.32
2465 2610 4.382040 GCTAGCCTGAGAAGACATAACACA 60.382 45.833 2.29 0.00 0.00 3.72
2466 2611 3.931578 AGCCTGAGAAGACATAACACAC 58.068 45.455 0.00 0.00 0.00 3.82
2467 2612 2.668457 GCCTGAGAAGACATAACACACG 59.332 50.000 0.00 0.00 0.00 4.49
2468 2613 3.614150 GCCTGAGAAGACATAACACACGA 60.614 47.826 0.00 0.00 0.00 4.35
2469 2614 4.556233 CCTGAGAAGACATAACACACGAA 58.444 43.478 0.00 0.00 0.00 3.85
2470 2615 5.171476 CCTGAGAAGACATAACACACGAAT 58.829 41.667 0.00 0.00 0.00 3.34
2471 2616 6.330278 CCTGAGAAGACATAACACACGAATA 58.670 40.000 0.00 0.00 0.00 1.75
2472 2617 6.253727 CCTGAGAAGACATAACACACGAATAC 59.746 42.308 0.00 0.00 0.00 1.89
2673 2820 8.225777 CCTGTAAATTTTCGTACTGTTTACTCC 58.774 37.037 0.00 0.00 36.63 3.85
2884 3033 1.002544 GGTACTCCTGCAACTGAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
3055 3204 4.844655 AGGAAACTGGTAACTACCTGACAT 59.155 41.667 16.99 5.14 46.58 3.06
3058 3207 6.148976 GGAAACTGGTAACTACCTGACATTTC 59.851 42.308 16.99 14.89 46.58 2.17
3077 3226 9.944663 GACATTTCACTCATGTAAAAGTTACAA 57.055 29.630 5.03 0.00 34.89 2.41
3081 3230 7.266922 TCACTCATGTAAAAGTTACAAACCC 57.733 36.000 5.03 0.00 0.00 4.11
3474 3627 5.250774 ACCTGATGGTACCAACATACTTCTT 59.749 40.000 23.53 0.90 46.43 2.52
3665 3878 5.181245 CGTGAATTTTTGGGACATGAGTACT 59.819 40.000 0.00 0.00 39.30 2.73
3757 3970 7.495934 ACAATCTTATCTTAATCTTGGGACGTG 59.504 37.037 0.00 0.00 0.00 4.49
3758 3971 5.357257 TCTTATCTTAATCTTGGGACGTGC 58.643 41.667 0.00 0.00 0.00 5.34
3933 4149 2.952310 GTGTCAGAAGGCAAAAGAGGTT 59.048 45.455 0.00 0.00 0.00 3.50
3934 4150 4.134563 GTGTCAGAAGGCAAAAGAGGTTA 58.865 43.478 0.00 0.00 0.00 2.85
3935 4151 4.578928 GTGTCAGAAGGCAAAAGAGGTTAA 59.421 41.667 0.00 0.00 0.00 2.01
3936 4152 4.821805 TGTCAGAAGGCAAAAGAGGTTAAG 59.178 41.667 0.00 0.00 0.00 1.85
3937 4153 5.063880 GTCAGAAGGCAAAAGAGGTTAAGA 58.936 41.667 0.00 0.00 0.00 2.10
3938 4154 5.531287 GTCAGAAGGCAAAAGAGGTTAAGAA 59.469 40.000 0.00 0.00 0.00 2.52
3939 4155 6.039382 GTCAGAAGGCAAAAGAGGTTAAGAAA 59.961 38.462 0.00 0.00 0.00 2.52
3940 4156 6.263168 TCAGAAGGCAAAAGAGGTTAAGAAAG 59.737 38.462 0.00 0.00 0.00 2.62
3941 4157 4.855715 AGGCAAAAGAGGTTAAGAAAGC 57.144 40.909 0.00 0.00 0.00 3.51
3942 4158 4.474394 AGGCAAAAGAGGTTAAGAAAGCT 58.526 39.130 0.00 0.00 45.93 3.74
3943 4159 4.895889 AGGCAAAAGAGGTTAAGAAAGCTT 59.104 37.500 0.00 0.00 43.36 3.74
3944 4160 4.984785 GGCAAAAGAGGTTAAGAAAGCTTG 59.015 41.667 0.00 0.00 43.36 4.01
3945 4161 5.451937 GGCAAAAGAGGTTAAGAAAGCTTGT 60.452 40.000 0.00 0.00 43.36 3.16
3946 4162 6.238925 GGCAAAAGAGGTTAAGAAAGCTTGTA 60.239 38.462 0.00 0.00 43.36 2.41
3947 4163 6.637254 GCAAAAGAGGTTAAGAAAGCTTGTAC 59.363 38.462 0.00 0.00 43.36 2.90
3948 4164 7.468768 GCAAAAGAGGTTAAGAAAGCTTGTACT 60.469 37.037 0.00 0.00 43.36 2.73
3949 4165 7.497925 AAAGAGGTTAAGAAAGCTTGTACTG 57.502 36.000 0.00 0.00 43.36 2.74
3950 4166 6.176014 AGAGGTTAAGAAAGCTTGTACTGT 57.824 37.500 0.00 0.00 43.36 3.55
3951 4167 6.592870 AGAGGTTAAGAAAGCTTGTACTGTT 58.407 36.000 0.00 0.00 43.36 3.16
3952 4168 6.483640 AGAGGTTAAGAAAGCTTGTACTGTTG 59.516 38.462 0.00 0.00 43.36 3.33
3953 4169 6.354130 AGGTTAAGAAAGCTTGTACTGTTGA 58.646 36.000 0.00 0.00 40.51 3.18
3954 4170 6.998673 AGGTTAAGAAAGCTTGTACTGTTGAT 59.001 34.615 0.00 0.00 40.51 2.57
3955 4171 7.502561 AGGTTAAGAAAGCTTGTACTGTTGATT 59.497 33.333 0.00 0.00 40.51 2.57
3956 4172 7.591426 GGTTAAGAAAGCTTGTACTGTTGATTG 59.409 37.037 0.00 0.00 35.56 2.67
3957 4173 6.699575 AAGAAAGCTTGTACTGTTGATTGT 57.300 33.333 0.00 0.00 31.83 2.71
3958 4174 6.064846 AGAAAGCTTGTACTGTTGATTGTG 57.935 37.500 0.00 0.00 0.00 3.33
3959 4175 5.590259 AGAAAGCTTGTACTGTTGATTGTGT 59.410 36.000 0.00 0.00 0.00 3.72
3960 4176 4.818534 AGCTTGTACTGTTGATTGTGTG 57.181 40.909 0.00 0.00 0.00 3.82
3961 4177 3.565482 AGCTTGTACTGTTGATTGTGTGG 59.435 43.478 0.00 0.00 0.00 4.17
3962 4178 3.304659 GCTTGTACTGTTGATTGTGTGGG 60.305 47.826 0.00 0.00 0.00 4.61
3963 4179 3.847671 TGTACTGTTGATTGTGTGGGA 57.152 42.857 0.00 0.00 0.00 4.37
3964 4180 3.738982 TGTACTGTTGATTGTGTGGGAG 58.261 45.455 0.00 0.00 0.00 4.30
3965 4181 3.389656 TGTACTGTTGATTGTGTGGGAGA 59.610 43.478 0.00 0.00 0.00 3.71
3966 4182 3.131709 ACTGTTGATTGTGTGGGAGAG 57.868 47.619 0.00 0.00 0.00 3.20
3967 4183 2.224621 ACTGTTGATTGTGTGGGAGAGG 60.225 50.000 0.00 0.00 0.00 3.69
3968 4184 1.168714 GTTGATTGTGTGGGAGAGGC 58.831 55.000 0.00 0.00 0.00 4.70
3969 4185 0.770499 TTGATTGTGTGGGAGAGGCA 59.230 50.000 0.00 0.00 0.00 4.75
3970 4186 0.325933 TGATTGTGTGGGAGAGGCAG 59.674 55.000 0.00 0.00 0.00 4.85
3971 4187 0.326264 GATTGTGTGGGAGAGGCAGT 59.674 55.000 0.00 0.00 0.00 4.40
3972 4188 0.326264 ATTGTGTGGGAGAGGCAGTC 59.674 55.000 0.00 0.00 0.00 3.51
3973 4189 1.768684 TTGTGTGGGAGAGGCAGTCC 61.769 60.000 0.00 0.00 0.00 3.85
3975 4191 1.152030 TGTGGGAGAGGCAGTCCTT 60.152 57.895 5.26 0.00 44.46 3.36
3976 4192 1.194781 TGTGGGAGAGGCAGTCCTTC 61.195 60.000 5.26 0.79 44.46 3.46
3977 4193 1.158466 TGGGAGAGGCAGTCCTTCA 59.842 57.895 5.26 0.00 44.46 3.02
3978 4194 0.473694 TGGGAGAGGCAGTCCTTCAA 60.474 55.000 5.26 0.00 44.46 2.69
3979 4195 0.915364 GGGAGAGGCAGTCCTTCAAT 59.085 55.000 5.26 0.00 44.46 2.57
3980 4196 1.283321 GGGAGAGGCAGTCCTTCAATT 59.717 52.381 5.26 0.00 44.46 2.32
3981 4197 2.505819 GGGAGAGGCAGTCCTTCAATTA 59.494 50.000 5.26 0.00 44.46 1.40
3982 4198 3.137360 GGGAGAGGCAGTCCTTCAATTAT 59.863 47.826 5.26 0.00 44.46 1.28
3983 4199 4.385754 GGGAGAGGCAGTCCTTCAATTATT 60.386 45.833 5.26 0.00 44.46 1.40
3984 4200 5.163195 GGGAGAGGCAGTCCTTCAATTATTA 60.163 44.000 5.26 0.00 44.46 0.98
3985 4201 5.760743 GGAGAGGCAGTCCTTCAATTATTAC 59.239 44.000 0.00 0.00 44.46 1.89
3986 4202 6.408662 GGAGAGGCAGTCCTTCAATTATTACT 60.409 42.308 0.00 0.00 44.46 2.24
3987 4203 6.587273 AGAGGCAGTCCTTCAATTATTACTC 58.413 40.000 0.00 0.00 44.46 2.59
3988 4204 5.685728 AGGCAGTCCTTCAATTATTACTCC 58.314 41.667 0.00 0.00 40.66 3.85
3989 4205 5.191722 AGGCAGTCCTTCAATTATTACTCCA 59.808 40.000 0.00 0.00 40.66 3.86
3990 4206 5.297029 GGCAGTCCTTCAATTATTACTCCAC 59.703 44.000 0.00 0.00 0.00 4.02
3991 4207 5.880332 GCAGTCCTTCAATTATTACTCCACA 59.120 40.000 0.00 0.00 0.00 4.17
3992 4208 6.543831 GCAGTCCTTCAATTATTACTCCACAT 59.456 38.462 0.00 0.00 0.00 3.21
3993 4209 7.467811 GCAGTCCTTCAATTATTACTCCACATG 60.468 40.741 0.00 0.00 0.00 3.21
3994 4210 6.543831 AGTCCTTCAATTATTACTCCACATGC 59.456 38.462 0.00 0.00 0.00 4.06
3995 4211 5.527214 TCCTTCAATTATTACTCCACATGCG 59.473 40.000 0.00 0.00 0.00 4.73
3996 4212 5.527214 CCTTCAATTATTACTCCACATGCGA 59.473 40.000 0.00 0.00 0.00 5.10
3997 4213 6.293081 CCTTCAATTATTACTCCACATGCGAG 60.293 42.308 8.49 8.49 0.00 5.03
3998 4214 5.912892 TCAATTATTACTCCACATGCGAGA 58.087 37.500 15.42 0.00 0.00 4.04
3999 4215 6.524734 TCAATTATTACTCCACATGCGAGAT 58.475 36.000 15.42 4.29 0.00 2.75
4000 4216 6.646653 TCAATTATTACTCCACATGCGAGATC 59.353 38.462 15.42 0.00 0.00 2.75
4001 4217 5.529581 TTATTACTCCACATGCGAGATCA 57.470 39.130 15.42 1.83 0.00 2.92
4002 4218 3.885724 TTACTCCACATGCGAGATCAA 57.114 42.857 15.42 5.50 0.00 2.57
4003 4219 2.306341 ACTCCACATGCGAGATCAAG 57.694 50.000 15.42 0.00 0.00 3.02
4004 4220 1.827344 ACTCCACATGCGAGATCAAGA 59.173 47.619 15.42 0.00 0.00 3.02
4005 4221 2.234661 ACTCCACATGCGAGATCAAGAA 59.765 45.455 15.42 0.00 0.00 2.52
4006 4222 2.606725 CTCCACATGCGAGATCAAGAAC 59.393 50.000 4.71 0.00 0.00 3.01
4007 4223 2.234661 TCCACATGCGAGATCAAGAACT 59.765 45.455 0.00 0.00 0.00 3.01
4008 4224 3.447229 TCCACATGCGAGATCAAGAACTA 59.553 43.478 0.00 0.00 0.00 2.24
4009 4225 4.100035 TCCACATGCGAGATCAAGAACTAT 59.900 41.667 0.00 0.00 0.00 2.12
4010 4226 4.447054 CCACATGCGAGATCAAGAACTATC 59.553 45.833 0.00 0.00 0.00 2.08
4011 4227 5.288015 CACATGCGAGATCAAGAACTATCT 58.712 41.667 0.00 0.00 37.57 1.98
4012 4228 6.442112 CACATGCGAGATCAAGAACTATCTA 58.558 40.000 0.00 0.00 33.77 1.98
4013 4229 7.089538 CACATGCGAGATCAAGAACTATCTAT 58.910 38.462 0.00 0.00 33.77 1.98
4014 4230 8.239998 CACATGCGAGATCAAGAACTATCTATA 58.760 37.037 0.00 0.00 33.77 1.31
4015 4231 8.797438 ACATGCGAGATCAAGAACTATCTATAA 58.203 33.333 0.00 0.00 33.77 0.98
4016 4232 9.800433 CATGCGAGATCAAGAACTATCTATAAT 57.200 33.333 0.00 0.00 33.77 1.28
4017 4233 9.800433 ATGCGAGATCAAGAACTATCTATAATG 57.200 33.333 0.00 0.00 33.77 1.90
4018 4234 8.246871 TGCGAGATCAAGAACTATCTATAATGG 58.753 37.037 0.00 0.00 33.77 3.16
4019 4235 7.704472 GCGAGATCAAGAACTATCTATAATGGG 59.296 40.741 0.00 0.00 33.77 4.00
4020 4236 7.704472 CGAGATCAAGAACTATCTATAATGGGC 59.296 40.741 0.00 0.00 33.77 5.36
4021 4237 8.677870 AGATCAAGAACTATCTATAATGGGCT 57.322 34.615 0.00 0.00 33.77 5.19
4022 4238 9.110382 AGATCAAGAACTATCTATAATGGGCTT 57.890 33.333 0.00 0.00 33.77 4.35
4023 4239 9.732130 GATCAAGAACTATCTATAATGGGCTTT 57.268 33.333 0.00 0.00 33.77 3.51
4024 4240 9.732130 ATCAAGAACTATCTATAATGGGCTTTC 57.268 33.333 0.00 0.00 33.77 2.62
4025 4241 8.713971 TCAAGAACTATCTATAATGGGCTTTCA 58.286 33.333 0.00 0.00 33.77 2.69
4026 4242 8.997323 CAAGAACTATCTATAATGGGCTTTCAG 58.003 37.037 0.00 0.00 33.77 3.02
4027 4243 8.497910 AGAACTATCTATAATGGGCTTTCAGA 57.502 34.615 0.00 0.00 32.88 3.27
4028 4244 8.938883 AGAACTATCTATAATGGGCTTTCAGAA 58.061 33.333 0.00 0.00 32.88 3.02
4029 4245 9.732130 GAACTATCTATAATGGGCTTTCAGAAT 57.268 33.333 0.00 0.00 0.00 2.40
4030 4246 9.512588 AACTATCTATAATGGGCTTTCAGAATG 57.487 33.333 0.00 0.00 37.54 2.67
4031 4247 6.830873 ATCTATAATGGGCTTTCAGAATGC 57.169 37.500 11.76 11.76 34.76 3.56
4032 4248 5.693961 TCTATAATGGGCTTTCAGAATGCA 58.306 37.500 19.71 0.00 34.76 3.96
4033 4249 4.660789 ATAATGGGCTTTCAGAATGCAC 57.339 40.909 19.71 17.46 35.67 4.57
4034 4250 0.813184 ATGGGCTTTCAGAATGCACG 59.187 50.000 19.71 0.00 37.75 5.34
4035 4251 0.537143 TGGGCTTTCAGAATGCACGT 60.537 50.000 19.71 0.00 37.75 4.49
4036 4252 0.109597 GGGCTTTCAGAATGCACGTG 60.110 55.000 19.71 12.28 34.76 4.49
4037 4253 0.874390 GGCTTTCAGAATGCACGTGA 59.126 50.000 22.23 4.80 34.76 4.35
4038 4254 1.266718 GGCTTTCAGAATGCACGTGAA 59.733 47.619 22.23 10.11 34.76 3.18
4039 4255 2.310577 GCTTTCAGAATGCACGTGAAC 58.689 47.619 22.23 2.42 34.76 3.18
4040 4256 2.031682 GCTTTCAGAATGCACGTGAACT 60.032 45.455 22.23 0.00 34.76 3.01
4041 4257 3.548587 CTTTCAGAATGCACGTGAACTG 58.451 45.455 22.23 19.74 34.76 3.16
4042 4258 2.524569 TCAGAATGCACGTGAACTGA 57.475 45.000 22.23 21.50 34.76 3.41
4043 4259 3.044235 TCAGAATGCACGTGAACTGAT 57.956 42.857 22.23 0.00 34.76 2.90
4044 4260 2.995939 TCAGAATGCACGTGAACTGATC 59.004 45.455 22.23 6.04 34.76 2.92
4045 4261 2.738314 CAGAATGCACGTGAACTGATCA 59.262 45.455 22.23 5.93 35.05 2.92
4046 4262 3.373130 CAGAATGCACGTGAACTGATCAT 59.627 43.478 22.23 8.28 40.97 2.45
4047 4263 4.005650 AGAATGCACGTGAACTGATCATT 58.994 39.130 22.23 16.57 40.97 2.57
4048 4264 5.063817 CAGAATGCACGTGAACTGATCATTA 59.936 40.000 22.23 0.00 40.97 1.90
4049 4265 5.819379 AGAATGCACGTGAACTGATCATTAT 59.181 36.000 22.23 11.52 40.97 1.28
4050 4266 6.986231 AGAATGCACGTGAACTGATCATTATA 59.014 34.615 22.23 0.00 40.97 0.98
4051 4267 6.775939 ATGCACGTGAACTGATCATTATAG 57.224 37.500 22.23 0.00 40.97 1.31
4052 4268 5.049828 TGCACGTGAACTGATCATTATAGG 58.950 41.667 22.23 0.00 40.97 2.57
4053 4269 4.449068 GCACGTGAACTGATCATTATAGGG 59.551 45.833 22.23 0.00 40.97 3.53
4054 4270 4.449068 CACGTGAACTGATCATTATAGGGC 59.551 45.833 10.90 0.00 40.97 5.19
4055 4271 3.675225 CGTGAACTGATCATTATAGGGCG 59.325 47.826 0.00 0.00 40.97 6.13
4056 4272 4.632153 GTGAACTGATCATTATAGGGCGT 58.368 43.478 0.00 0.00 40.97 5.68
4057 4273 4.449068 GTGAACTGATCATTATAGGGCGTG 59.551 45.833 0.00 0.00 40.97 5.34
4058 4274 4.100963 TGAACTGATCATTATAGGGCGTGT 59.899 41.667 0.00 0.00 31.50 4.49
4059 4275 4.689612 ACTGATCATTATAGGGCGTGTT 57.310 40.909 0.00 0.00 0.00 3.32
4060 4276 5.036117 ACTGATCATTATAGGGCGTGTTT 57.964 39.130 0.00 0.00 0.00 2.83
4061 4277 4.816385 ACTGATCATTATAGGGCGTGTTTG 59.184 41.667 0.00 0.00 0.00 2.93
4062 4278 4.133820 TGATCATTATAGGGCGTGTTTGG 58.866 43.478 0.00 0.00 0.00 3.28
4063 4279 3.637911 TCATTATAGGGCGTGTTTGGT 57.362 42.857 0.00 0.00 0.00 3.67
4064 4280 3.958018 TCATTATAGGGCGTGTTTGGTT 58.042 40.909 0.00 0.00 0.00 3.67
4065 4281 5.100344 TCATTATAGGGCGTGTTTGGTTA 57.900 39.130 0.00 0.00 0.00 2.85
4066 4282 5.120399 TCATTATAGGGCGTGTTTGGTTAG 58.880 41.667 0.00 0.00 0.00 2.34
4067 4283 4.556592 TTATAGGGCGTGTTTGGTTAGT 57.443 40.909 0.00 0.00 0.00 2.24
4068 4284 2.934886 TAGGGCGTGTTTGGTTAGTT 57.065 45.000 0.00 0.00 0.00 2.24
4069 4285 2.061509 AGGGCGTGTTTGGTTAGTTT 57.938 45.000 0.00 0.00 0.00 2.66
4070 4286 1.951602 AGGGCGTGTTTGGTTAGTTTC 59.048 47.619 0.00 0.00 0.00 2.78
4071 4287 1.951602 GGGCGTGTTTGGTTAGTTTCT 59.048 47.619 0.00 0.00 0.00 2.52
4072 4288 2.359848 GGGCGTGTTTGGTTAGTTTCTT 59.640 45.455 0.00 0.00 0.00 2.52
4073 4289 3.549423 GGGCGTGTTTGGTTAGTTTCTTC 60.549 47.826 0.00 0.00 0.00 2.87
4074 4290 3.065648 GGCGTGTTTGGTTAGTTTCTTCA 59.934 43.478 0.00 0.00 0.00 3.02
4075 4291 4.033019 GCGTGTTTGGTTAGTTTCTTCAC 58.967 43.478 0.00 0.00 0.00 3.18
4076 4292 4.594136 CGTGTTTGGTTAGTTTCTTCACC 58.406 43.478 0.00 0.00 0.00 4.02
4077 4293 4.594136 GTGTTTGGTTAGTTTCTTCACCG 58.406 43.478 0.00 0.00 31.24 4.94
4078 4294 3.628487 TGTTTGGTTAGTTTCTTCACCGG 59.372 43.478 0.00 0.00 31.24 5.28
4079 4295 2.554370 TGGTTAGTTTCTTCACCGGG 57.446 50.000 6.32 0.00 31.24 5.73
4080 4296 1.162698 GGTTAGTTTCTTCACCGGGC 58.837 55.000 6.32 0.00 0.00 6.13
4081 4297 1.162698 GTTAGTTTCTTCACCGGGCC 58.837 55.000 6.32 0.00 0.00 5.80
4082 4298 1.061546 TTAGTTTCTTCACCGGGCCT 58.938 50.000 6.32 0.00 0.00 5.19
4083 4299 1.941377 TAGTTTCTTCACCGGGCCTA 58.059 50.000 6.32 0.00 0.00 3.93
4084 4300 0.613777 AGTTTCTTCACCGGGCCTAG 59.386 55.000 6.32 0.00 0.00 3.02
4085 4301 1.025113 GTTTCTTCACCGGGCCTAGC 61.025 60.000 6.32 0.00 0.00 3.42
4096 4312 3.313874 GCCTAGCCAGGAGAGCAA 58.686 61.111 0.85 0.00 45.91 3.91
4097 4313 1.604378 GCCTAGCCAGGAGAGCAAA 59.396 57.895 0.85 0.00 45.91 3.68
4098 4314 0.035056 GCCTAGCCAGGAGAGCAAAA 60.035 55.000 0.85 0.00 45.91 2.44
4099 4315 1.614317 GCCTAGCCAGGAGAGCAAAAA 60.614 52.381 0.85 0.00 45.91 1.94
4100 4316 2.087646 CCTAGCCAGGAGAGCAAAAAC 58.912 52.381 0.00 0.00 45.91 2.43
4101 4317 1.734465 CTAGCCAGGAGAGCAAAAACG 59.266 52.381 0.00 0.00 0.00 3.60
4102 4318 0.108585 AGCCAGGAGAGCAAAAACGA 59.891 50.000 0.00 0.00 0.00 3.85
4103 4319 0.519077 GCCAGGAGAGCAAAAACGAG 59.481 55.000 0.00 0.00 0.00 4.18
4104 4320 0.519077 CCAGGAGAGCAAAAACGAGC 59.481 55.000 0.00 0.00 0.00 5.03
4105 4321 0.519077 CAGGAGAGCAAAAACGAGCC 59.481 55.000 0.00 0.00 0.00 4.70
4106 4322 0.108585 AGGAGAGCAAAAACGAGCCA 59.891 50.000 0.00 0.00 0.00 4.75
4107 4323 0.238553 GGAGAGCAAAAACGAGCCAC 59.761 55.000 0.00 0.00 0.00 5.01
4108 4324 0.944386 GAGAGCAAAAACGAGCCACA 59.056 50.000 0.00 0.00 0.00 4.17
4109 4325 0.663153 AGAGCAAAAACGAGCCACAC 59.337 50.000 0.00 0.00 0.00 3.82
4110 4326 0.663153 GAGCAAAAACGAGCCACACT 59.337 50.000 0.00 0.00 0.00 3.55
4111 4327 1.871039 GAGCAAAAACGAGCCACACTA 59.129 47.619 0.00 0.00 0.00 2.74
4112 4328 2.289547 GAGCAAAAACGAGCCACACTAA 59.710 45.455 0.00 0.00 0.00 2.24
4113 4329 2.290641 AGCAAAAACGAGCCACACTAAG 59.709 45.455 0.00 0.00 0.00 2.18
4114 4330 2.650608 CAAAAACGAGCCACACTAAGC 58.349 47.619 0.00 0.00 0.00 3.09
4115 4331 1.961793 AAAACGAGCCACACTAAGCA 58.038 45.000 0.00 0.00 0.00 3.91
4116 4332 1.512926 AAACGAGCCACACTAAGCAG 58.487 50.000 0.00 0.00 0.00 4.24
4117 4333 0.320771 AACGAGCCACACTAAGCAGG 60.321 55.000 0.00 0.00 0.00 4.85
4118 4334 1.448540 CGAGCCACACTAAGCAGGG 60.449 63.158 0.00 0.00 0.00 4.45
4119 4335 1.679898 GAGCCACACTAAGCAGGGT 59.320 57.895 0.00 0.00 39.77 4.34
4120 4336 0.391793 GAGCCACACTAAGCAGGGTC 60.392 60.000 0.00 0.00 35.73 4.46
4121 4337 0.838122 AGCCACACTAAGCAGGGTCT 60.838 55.000 0.00 0.00 35.73 3.85
4122 4338 0.674895 GCCACACTAAGCAGGGTCTG 60.675 60.000 0.00 0.00 35.73 3.51
4123 4339 0.036010 CCACACTAAGCAGGGTCTGG 60.036 60.000 0.00 0.00 35.73 3.86
4124 4340 0.036010 CACACTAAGCAGGGTCTGGG 60.036 60.000 0.00 0.00 35.73 4.45
4125 4341 0.473886 ACACTAAGCAGGGTCTGGGT 60.474 55.000 0.00 0.00 30.28 4.51
4126 4342 1.203262 ACACTAAGCAGGGTCTGGGTA 60.203 52.381 0.00 0.00 30.28 3.69
4127 4343 1.906574 CACTAAGCAGGGTCTGGGTAA 59.093 52.381 0.00 0.00 31.21 2.85
4128 4344 2.093447 CACTAAGCAGGGTCTGGGTAAG 60.093 54.545 0.00 0.00 31.21 2.34
4129 4345 1.486726 CTAAGCAGGGTCTGGGTAAGG 59.513 57.143 0.00 0.00 31.21 2.69
4130 4346 0.178873 AAGCAGGGTCTGGGTAAGGA 60.179 55.000 0.00 0.00 31.21 3.36
4131 4347 0.178873 AGCAGGGTCTGGGTAAGGAA 60.179 55.000 0.00 0.00 31.21 3.36
4132 4348 0.696501 GCAGGGTCTGGGTAAGGAAA 59.303 55.000 0.00 0.00 31.21 3.13
4133 4349 1.074889 GCAGGGTCTGGGTAAGGAAAA 59.925 52.381 0.00 0.00 31.21 2.29
4134 4350 2.490168 GCAGGGTCTGGGTAAGGAAAAA 60.490 50.000 0.00 0.00 31.21 1.94
4135 4351 3.154710 CAGGGTCTGGGTAAGGAAAAAC 58.845 50.000 0.00 0.00 0.00 2.43
4136 4352 2.787035 AGGGTCTGGGTAAGGAAAAACA 59.213 45.455 0.00 0.00 0.00 2.83
4137 4353 3.154710 GGGTCTGGGTAAGGAAAAACAG 58.845 50.000 0.00 0.00 0.00 3.16
4138 4354 3.154710 GGTCTGGGTAAGGAAAAACAGG 58.845 50.000 0.00 0.00 0.00 4.00
4139 4355 3.154710 GTCTGGGTAAGGAAAAACAGGG 58.845 50.000 0.00 0.00 0.00 4.45
4140 4356 2.787035 TCTGGGTAAGGAAAAACAGGGT 59.213 45.455 0.00 0.00 0.00 4.34
4141 4357 3.982052 TCTGGGTAAGGAAAAACAGGGTA 59.018 43.478 0.00 0.00 0.00 3.69
4142 4358 4.416179 TCTGGGTAAGGAAAAACAGGGTAA 59.584 41.667 0.00 0.00 0.00 2.85
4143 4359 5.103601 TCTGGGTAAGGAAAAACAGGGTAAA 60.104 40.000 0.00 0.00 0.00 2.01
4144 4360 5.526434 TGGGTAAGGAAAAACAGGGTAAAA 58.474 37.500 0.00 0.00 0.00 1.52
4145 4361 5.962641 TGGGTAAGGAAAAACAGGGTAAAAA 59.037 36.000 0.00 0.00 0.00 1.94
4167 4383 5.909621 AATTGAGATGACCAGTTGATTGG 57.090 39.130 0.00 0.00 44.09 3.16
4175 4391 0.037975 CCAGTTGATTGGTTGCCTGC 60.038 55.000 0.00 0.00 33.38 4.85
4176 4392 0.675083 CAGTTGATTGGTTGCCTGCA 59.325 50.000 0.00 0.00 0.00 4.41
4177 4393 1.274167 CAGTTGATTGGTTGCCTGCAT 59.726 47.619 0.00 0.00 0.00 3.96
4178 4394 1.972795 AGTTGATTGGTTGCCTGCATT 59.027 42.857 0.00 0.00 0.00 3.56
4179 4395 3.056678 CAGTTGATTGGTTGCCTGCATTA 60.057 43.478 0.00 0.00 0.00 1.90
4180 4396 3.194116 AGTTGATTGGTTGCCTGCATTAG 59.806 43.478 0.00 0.00 0.00 1.73
4191 4407 3.565764 CCTGCATTAGGGATCTTGTCA 57.434 47.619 0.00 0.00 43.33 3.58
4192 4408 4.096190 CCTGCATTAGGGATCTTGTCAT 57.904 45.455 0.00 0.00 43.33 3.06
4193 4409 4.467769 CCTGCATTAGGGATCTTGTCATT 58.532 43.478 0.00 0.00 43.33 2.57
4194 4410 4.277672 CCTGCATTAGGGATCTTGTCATTG 59.722 45.833 0.00 0.00 43.33 2.82
4195 4411 5.114764 TGCATTAGGGATCTTGTCATTGA 57.885 39.130 0.00 0.00 0.00 2.57
4196 4412 5.128205 TGCATTAGGGATCTTGTCATTGAG 58.872 41.667 0.00 0.00 0.00 3.02
4197 4413 5.104402 TGCATTAGGGATCTTGTCATTGAGA 60.104 40.000 0.00 0.00 0.00 3.27
4198 4414 6.002704 GCATTAGGGATCTTGTCATTGAGAT 58.997 40.000 0.00 0.00 35.41 2.75
4199 4415 6.072618 GCATTAGGGATCTTGTCATTGAGATG 60.073 42.308 0.00 0.00 32.96 2.90
4200 4416 3.818180 AGGGATCTTGTCATTGAGATGC 58.182 45.455 0.00 0.00 39.25 3.91
4201 4417 3.201487 AGGGATCTTGTCATTGAGATGCA 59.799 43.478 6.79 0.00 41.02 3.96
4202 4418 4.141228 AGGGATCTTGTCATTGAGATGCAT 60.141 41.667 0.00 0.00 41.02 3.96
4203 4419 4.583489 GGGATCTTGTCATTGAGATGCATT 59.417 41.667 0.00 0.00 41.02 3.56
4204 4420 5.068723 GGGATCTTGTCATTGAGATGCATTT 59.931 40.000 0.00 0.00 41.02 2.32
4205 4421 6.406624 GGGATCTTGTCATTGAGATGCATTTT 60.407 38.462 0.00 0.00 41.02 1.82
4206 4422 7.039882 GGATCTTGTCATTGAGATGCATTTTT 58.960 34.615 0.00 0.00 39.61 1.94
4207 4423 7.222224 GGATCTTGTCATTGAGATGCATTTTTC 59.778 37.037 0.00 0.03 39.61 2.29
4208 4424 6.983984 TCTTGTCATTGAGATGCATTTTTCA 58.016 32.000 0.00 2.94 33.14 2.69
4209 4425 7.608153 TCTTGTCATTGAGATGCATTTTTCAT 58.392 30.769 0.00 0.00 33.14 2.57
4210 4426 8.092068 TCTTGTCATTGAGATGCATTTTTCATT 58.908 29.630 0.00 0.00 33.14 2.57
4211 4427 7.821595 TGTCATTGAGATGCATTTTTCATTC 57.178 32.000 0.00 0.00 33.14 2.67
4212 4428 6.528774 TGTCATTGAGATGCATTTTTCATTCG 59.471 34.615 0.00 0.00 33.14 3.34
4213 4429 6.020121 GTCATTGAGATGCATTTTTCATTCGG 60.020 38.462 0.00 0.00 33.14 4.30
4214 4430 3.772932 TGAGATGCATTTTTCATTCGGC 58.227 40.909 0.00 0.00 0.00 5.54
4215 4431 2.785477 GAGATGCATTTTTCATTCGGCG 59.215 45.455 0.00 0.00 0.00 6.46
4216 4432 2.164219 AGATGCATTTTTCATTCGGCGT 59.836 40.909 6.85 0.00 0.00 5.68
4217 4433 2.430546 TGCATTTTTCATTCGGCGTT 57.569 40.000 6.85 0.00 0.00 4.84
4218 4434 2.748605 TGCATTTTTCATTCGGCGTTT 58.251 38.095 6.85 0.00 0.00 3.60
4219 4435 2.474359 TGCATTTTTCATTCGGCGTTTG 59.526 40.909 6.85 6.13 0.00 2.93
4220 4436 2.159854 GCATTTTTCATTCGGCGTTTGG 60.160 45.455 6.85 0.00 0.00 3.28
4221 4437 2.873133 TTTTTCATTCGGCGTTTGGT 57.127 40.000 6.85 0.00 0.00 3.67
4222 4438 2.873133 TTTTCATTCGGCGTTTGGTT 57.127 40.000 6.85 0.00 0.00 3.67
4223 4439 2.126914 TTTCATTCGGCGTTTGGTTG 57.873 45.000 6.85 0.00 0.00 3.77
4224 4440 0.318275 TTCATTCGGCGTTTGGTTGC 60.318 50.000 6.85 0.00 0.00 4.17
4225 4441 1.007964 CATTCGGCGTTTGGTTGCA 60.008 52.632 6.85 0.00 0.00 4.08
4226 4442 0.388391 CATTCGGCGTTTGGTTGCAT 60.388 50.000 6.85 0.00 0.00 3.96
4227 4443 1.135546 CATTCGGCGTTTGGTTGCATA 60.136 47.619 6.85 0.00 0.00 3.14
4228 4444 0.238817 TTCGGCGTTTGGTTGCATAC 59.761 50.000 6.85 0.00 0.00 2.39
4229 4445 0.885150 TCGGCGTTTGGTTGCATACA 60.885 50.000 6.85 0.00 0.00 2.29
4230 4446 0.170116 CGGCGTTTGGTTGCATACAT 59.830 50.000 0.00 0.00 0.00 2.29
4231 4447 1.627879 GGCGTTTGGTTGCATACATG 58.372 50.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.267503 GAGGTCGCGGATCGGTCC 62.268 72.222 4.00 4.00 41.40 4.46
86 87 1.218316 GGGTAGTCAGGTTGAGCCG 59.782 63.158 0.00 0.00 43.70 5.52
313 322 1.271379 GGTAGAAAGCAGTGAAGGGCA 60.271 52.381 0.00 0.00 0.00 5.36
462 471 0.371645 CAGATTCGCAGAGGAAACGC 59.628 55.000 0.00 0.00 38.43 4.84
483 492 2.202690 CGCGACAGCCCGAATGTA 60.203 61.111 0.00 0.00 41.18 2.29
547 556 1.372501 AGCAGTAACACCAATCCCCT 58.627 50.000 0.00 0.00 0.00 4.79
647 656 1.582610 CCACACGAAATGAACGGGGG 61.583 60.000 0.00 0.00 38.55 5.40
652 662 4.631377 TGATGATCTCCACACGAAATGAAC 59.369 41.667 0.00 0.00 0.00 3.18
737 747 5.755409 TTCTGGGCAGTTACTTCAGATTA 57.245 39.130 9.48 0.00 34.89 1.75
748 758 5.710099 TCTCGAAATAAAATTCTGGGCAGTT 59.290 36.000 0.00 0.00 0.00 3.16
756 766 7.410120 AGCCCAAATCTCGAAATAAAATTCT 57.590 32.000 0.00 0.00 0.00 2.40
801 832 6.364976 GCACAAAGTACAAACCCAATAATCAC 59.635 38.462 0.00 0.00 0.00 3.06
947 978 7.571428 GCTGTGTTATAGAAACAAGTTGGACTC 60.571 40.741 7.96 0.64 31.20 3.36
1591 1730 2.586792 CAGGGGTACTCTGCAGCC 59.413 66.667 9.47 3.93 0.00 4.85
1633 1772 4.564372 GCGACTTACGATGCATGATCATAT 59.436 41.667 8.15 0.00 45.77 1.78
1642 1781 0.107897 AATGGGCGACTTACGATGCA 60.108 50.000 0.00 0.00 45.77 3.96
1782 1923 3.683365 ACAGTTCAAAATGAATGCCCC 57.317 42.857 0.00 0.00 38.79 5.80
2118 2259 3.536956 ATGCAAAGAGATGGGCAATTG 57.463 42.857 0.00 0.00 40.02 2.32
2122 2263 0.533491 GCAATGCAAAGAGATGGGCA 59.467 50.000 0.00 0.00 41.00 5.36
2421 2566 6.625532 AGCCAAAAATCCTAATTGTGGAAT 57.374 33.333 6.18 0.00 37.13 3.01
2422 2567 6.350949 GCTAGCCAAAAATCCTAATTGTGGAA 60.351 38.462 2.29 0.00 37.13 3.53
2423 2568 5.127031 GCTAGCCAAAAATCCTAATTGTGGA 59.873 40.000 2.29 4.78 34.75 4.02
2424 2569 5.351458 GCTAGCCAAAAATCCTAATTGTGG 58.649 41.667 2.29 0.00 35.42 4.17
2425 2570 5.127682 AGGCTAGCCAAAAATCCTAATTGTG 59.872 40.000 34.70 0.00 38.92 3.33
2426 2571 5.127682 CAGGCTAGCCAAAAATCCTAATTGT 59.872 40.000 34.70 5.83 38.92 2.71
2427 2572 5.360714 TCAGGCTAGCCAAAAATCCTAATTG 59.639 40.000 34.70 18.86 38.92 2.32
2428 2573 5.518865 TCAGGCTAGCCAAAAATCCTAATT 58.481 37.500 34.70 7.02 38.92 1.40
2429 2574 5.103940 TCTCAGGCTAGCCAAAAATCCTAAT 60.104 40.000 34.70 7.25 38.92 1.73
2430 2575 4.227300 TCTCAGGCTAGCCAAAAATCCTAA 59.773 41.667 34.70 6.51 38.92 2.69
2431 2576 3.780294 TCTCAGGCTAGCCAAAAATCCTA 59.220 43.478 34.70 7.83 38.92 2.94
2432 2577 2.578021 TCTCAGGCTAGCCAAAAATCCT 59.422 45.455 34.70 9.43 38.92 3.24
2433 2578 3.004752 TCTCAGGCTAGCCAAAAATCC 57.995 47.619 34.70 5.86 38.92 3.01
2434 2579 4.095632 GTCTTCTCAGGCTAGCCAAAAATC 59.904 45.833 34.70 14.03 38.92 2.17
2435 2580 4.013050 GTCTTCTCAGGCTAGCCAAAAAT 58.987 43.478 34.70 11.89 38.92 1.82
2436 2581 3.181445 TGTCTTCTCAGGCTAGCCAAAAA 60.181 43.478 34.70 20.55 38.92 1.94
2437 2582 2.371841 TGTCTTCTCAGGCTAGCCAAAA 59.628 45.455 34.70 20.23 38.92 2.44
2438 2583 1.977854 TGTCTTCTCAGGCTAGCCAAA 59.022 47.619 34.70 20.73 38.92 3.28
2439 2584 1.644509 TGTCTTCTCAGGCTAGCCAA 58.355 50.000 34.70 21.10 38.92 4.52
2440 2585 1.871418 ATGTCTTCTCAGGCTAGCCA 58.129 50.000 34.70 15.14 38.92 4.75
2441 2586 3.133003 TGTTATGTCTTCTCAGGCTAGCC 59.867 47.826 27.19 27.19 0.00 3.93
2442 2587 4.116238 GTGTTATGTCTTCTCAGGCTAGC 58.884 47.826 6.04 6.04 0.00 3.42
2443 2588 5.105752 GTGTGTTATGTCTTCTCAGGCTAG 58.894 45.833 0.00 0.00 0.00 3.42
2444 2589 4.380550 CGTGTGTTATGTCTTCTCAGGCTA 60.381 45.833 0.00 0.00 0.00 3.93
2445 2590 3.615110 CGTGTGTTATGTCTTCTCAGGCT 60.615 47.826 0.00 0.00 0.00 4.58
2446 2591 2.668457 CGTGTGTTATGTCTTCTCAGGC 59.332 50.000 0.00 0.00 0.00 4.85
2447 2592 4.174411 TCGTGTGTTATGTCTTCTCAGG 57.826 45.455 0.00 0.00 0.00 3.86
2448 2593 6.806739 TGTATTCGTGTGTTATGTCTTCTCAG 59.193 38.462 0.00 0.00 0.00 3.35
2449 2594 6.683715 TGTATTCGTGTGTTATGTCTTCTCA 58.316 36.000 0.00 0.00 0.00 3.27
2450 2595 7.757097 ATGTATTCGTGTGTTATGTCTTCTC 57.243 36.000 0.00 0.00 0.00 2.87
2451 2596 7.277981 GGAATGTATTCGTGTGTTATGTCTTCT 59.722 37.037 0.00 0.00 37.67 2.85
2452 2597 7.064134 TGGAATGTATTCGTGTGTTATGTCTTC 59.936 37.037 0.00 0.00 37.67 2.87
2453 2598 6.876789 TGGAATGTATTCGTGTGTTATGTCTT 59.123 34.615 0.00 0.00 37.67 3.01
2454 2599 6.312918 GTGGAATGTATTCGTGTGTTATGTCT 59.687 38.462 0.00 0.00 37.67 3.41
2455 2600 6.091577 TGTGGAATGTATTCGTGTGTTATGTC 59.908 38.462 0.00 0.00 37.67 3.06
2456 2601 5.935206 TGTGGAATGTATTCGTGTGTTATGT 59.065 36.000 0.00 0.00 37.67 2.29
2457 2602 6.415798 TGTGGAATGTATTCGTGTGTTATG 57.584 37.500 0.00 0.00 37.67 1.90
2458 2603 7.624360 ATTGTGGAATGTATTCGTGTGTTAT 57.376 32.000 0.00 0.00 37.67 1.89
2459 2604 7.441890 AATTGTGGAATGTATTCGTGTGTTA 57.558 32.000 0.00 0.00 37.67 2.41
2460 2605 5.957842 ATTGTGGAATGTATTCGTGTGTT 57.042 34.783 0.00 0.00 37.67 3.32
2461 2606 5.957842 AATTGTGGAATGTATTCGTGTGT 57.042 34.783 0.00 0.00 37.67 3.72
2462 2607 6.315144 TCCTAATTGTGGAATGTATTCGTGTG 59.685 38.462 0.26 0.00 37.67 3.82
2463 2608 6.411376 TCCTAATTGTGGAATGTATTCGTGT 58.589 36.000 0.26 0.00 37.67 4.49
2464 2609 6.918892 TCCTAATTGTGGAATGTATTCGTG 57.081 37.500 0.26 0.00 37.67 4.35
2465 2610 8.519799 AAATCCTAATTGTGGAATGTATTCGT 57.480 30.769 6.18 0.00 37.67 3.85
2466 2611 9.801873 AAAAATCCTAATTGTGGAATGTATTCG 57.198 29.630 6.18 0.00 37.67 3.34
2468 2613 9.889128 CCAAAAATCCTAATTGTGGAATGTATT 57.111 29.630 6.18 0.00 37.13 1.89
2469 2614 7.986889 GCCAAAAATCCTAATTGTGGAATGTAT 59.013 33.333 6.18 0.00 37.13 2.29
2470 2615 7.180051 AGCCAAAAATCCTAATTGTGGAATGTA 59.820 33.333 6.18 0.00 37.13 2.29
2471 2616 6.013466 AGCCAAAAATCCTAATTGTGGAATGT 60.013 34.615 6.18 0.00 37.13 2.71
2472 2617 6.408869 AGCCAAAAATCCTAATTGTGGAATG 58.591 36.000 6.18 4.44 37.13 2.67
2884 3033 5.105146 ACAAAGGTTTAAACAACATGCCTGA 60.105 36.000 19.57 0.00 0.00 3.86
2894 3043 4.027437 AGGGCTCAACAAAGGTTTAAACA 58.973 39.130 19.57 0.00 34.21 2.83
3055 3204 8.192110 GGGTTTGTAACTTTTACATGAGTGAAA 58.808 33.333 0.00 0.00 32.98 2.69
3058 3207 7.272037 AGGGTTTGTAACTTTTACATGAGTG 57.728 36.000 0.00 0.00 0.00 3.51
3077 3226 6.133356 TCAGAAATGGACAACTAAAAGGGTT 58.867 36.000 0.00 0.00 0.00 4.11
3081 3230 6.583806 GCACATCAGAAATGGACAACTAAAAG 59.416 38.462 0.00 0.00 0.00 2.27
3128 3281 4.782691 TCCATTTGACACCCATCTAGAAGA 59.217 41.667 0.00 0.00 0.00 2.87
3474 3627 9.996554 TTTATGAACTTCATCAACTCTTCTGTA 57.003 29.630 7.57 0.00 38.26 2.74
3683 3896 3.940852 CCAGACAAAGTAGCATGCATACA 59.059 43.478 21.98 0.00 0.00 2.29
3685 3898 4.220693 ACCAGACAAAGTAGCATGCATA 57.779 40.909 21.98 6.62 0.00 3.14
3688 3901 3.861840 TCTACCAGACAAAGTAGCATGC 58.138 45.455 10.51 10.51 36.67 4.06
3689 3902 3.868077 GCTCTACCAGACAAAGTAGCATG 59.132 47.826 0.00 0.00 36.67 4.06
3690 3903 3.515502 TGCTCTACCAGACAAAGTAGCAT 59.484 43.478 0.00 0.00 36.67 3.79
3691 3904 2.897326 TGCTCTACCAGACAAAGTAGCA 59.103 45.455 0.00 0.00 36.67 3.49
3692 3905 3.594603 TGCTCTACCAGACAAAGTAGC 57.405 47.619 0.00 0.00 36.67 3.58
3752 3965 6.887376 TTTTTATCATCTCTACAGCACGTC 57.113 37.500 0.00 0.00 0.00 4.34
3864 4077 5.444176 CATCCTCTTGGCCTTCTCTTAATT 58.556 41.667 3.32 0.00 0.00 1.40
3905 4121 2.346766 TGCCTTCTGACACAACACAT 57.653 45.000 0.00 0.00 0.00 3.21
3933 4149 7.282224 ACACAATCAACAGTACAAGCTTTCTTA 59.718 33.333 0.00 0.00 0.00 2.10
3934 4150 6.095440 ACACAATCAACAGTACAAGCTTTCTT 59.905 34.615 0.00 0.00 0.00 2.52
3935 4151 5.590259 ACACAATCAACAGTACAAGCTTTCT 59.410 36.000 0.00 0.00 0.00 2.52
3936 4152 5.682862 CACACAATCAACAGTACAAGCTTTC 59.317 40.000 0.00 0.00 0.00 2.62
3937 4153 5.450412 CCACACAATCAACAGTACAAGCTTT 60.450 40.000 0.00 0.00 0.00 3.51
3938 4154 4.036734 CCACACAATCAACAGTACAAGCTT 59.963 41.667 0.00 0.00 0.00 3.74
3939 4155 3.565482 CCACACAATCAACAGTACAAGCT 59.435 43.478 0.00 0.00 0.00 3.74
3940 4156 3.304659 CCCACACAATCAACAGTACAAGC 60.305 47.826 0.00 0.00 0.00 4.01
3941 4157 4.133820 TCCCACACAATCAACAGTACAAG 58.866 43.478 0.00 0.00 0.00 3.16
3942 4158 4.133820 CTCCCACACAATCAACAGTACAA 58.866 43.478 0.00 0.00 0.00 2.41
3943 4159 3.389656 TCTCCCACACAATCAACAGTACA 59.610 43.478 0.00 0.00 0.00 2.90
3944 4160 3.997021 CTCTCCCACACAATCAACAGTAC 59.003 47.826 0.00 0.00 0.00 2.73
3945 4161 3.007940 CCTCTCCCACACAATCAACAGTA 59.992 47.826 0.00 0.00 0.00 2.74
3946 4162 2.224621 CCTCTCCCACACAATCAACAGT 60.225 50.000 0.00 0.00 0.00 3.55
3947 4163 2.430465 CCTCTCCCACACAATCAACAG 58.570 52.381 0.00 0.00 0.00 3.16
3948 4164 1.545428 GCCTCTCCCACACAATCAACA 60.545 52.381 0.00 0.00 0.00 3.33
3949 4165 1.168714 GCCTCTCCCACACAATCAAC 58.831 55.000 0.00 0.00 0.00 3.18
3950 4166 0.770499 TGCCTCTCCCACACAATCAA 59.230 50.000 0.00 0.00 0.00 2.57
3951 4167 0.325933 CTGCCTCTCCCACACAATCA 59.674 55.000 0.00 0.00 0.00 2.57
3952 4168 0.326264 ACTGCCTCTCCCACACAATC 59.674 55.000 0.00 0.00 0.00 2.67
3953 4169 0.326264 GACTGCCTCTCCCACACAAT 59.674 55.000 0.00 0.00 0.00 2.71
3954 4170 1.754745 GACTGCCTCTCCCACACAA 59.245 57.895 0.00 0.00 0.00 3.33
3955 4171 2.217038 GGACTGCCTCTCCCACACA 61.217 63.158 0.00 0.00 0.00 3.72
3956 4172 1.484444 AAGGACTGCCTCTCCCACAC 61.484 60.000 0.00 0.00 46.28 3.82
3957 4173 1.152030 AAGGACTGCCTCTCCCACA 60.152 57.895 0.00 0.00 46.28 4.17
3958 4174 1.194781 TGAAGGACTGCCTCTCCCAC 61.195 60.000 0.00 0.00 46.28 4.61
3959 4175 0.473694 TTGAAGGACTGCCTCTCCCA 60.474 55.000 0.00 0.00 46.28 4.37
3960 4176 0.915364 ATTGAAGGACTGCCTCTCCC 59.085 55.000 0.00 0.00 46.28 4.30
3961 4177 2.797177 AATTGAAGGACTGCCTCTCC 57.203 50.000 0.00 0.00 46.28 3.71
3962 4178 6.587273 AGTAATAATTGAAGGACTGCCTCTC 58.413 40.000 0.00 0.00 46.28 3.20
3963 4179 6.408662 GGAGTAATAATTGAAGGACTGCCTCT 60.409 42.308 0.00 0.00 46.28 3.69
3964 4180 5.760743 GGAGTAATAATTGAAGGACTGCCTC 59.239 44.000 0.00 0.00 46.28 4.70
3966 4182 5.297029 GTGGAGTAATAATTGAAGGACTGCC 59.703 44.000 0.00 0.00 0.00 4.85
3967 4183 5.880332 TGTGGAGTAATAATTGAAGGACTGC 59.120 40.000 0.00 0.00 0.00 4.40
3968 4184 7.467811 GCATGTGGAGTAATAATTGAAGGACTG 60.468 40.741 0.00 0.00 0.00 3.51
3969 4185 6.543831 GCATGTGGAGTAATAATTGAAGGACT 59.456 38.462 0.00 0.00 0.00 3.85
3970 4186 6.511767 CGCATGTGGAGTAATAATTGAAGGAC 60.512 42.308 0.00 0.00 0.00 3.85
3971 4187 5.527214 CGCATGTGGAGTAATAATTGAAGGA 59.473 40.000 0.00 0.00 0.00 3.36
3972 4188 5.527214 TCGCATGTGGAGTAATAATTGAAGG 59.473 40.000 6.39 0.00 0.00 3.46
3973 4189 6.479990 TCTCGCATGTGGAGTAATAATTGAAG 59.520 38.462 6.39 0.00 33.26 3.02
3974 4190 6.345298 TCTCGCATGTGGAGTAATAATTGAA 58.655 36.000 6.39 0.00 33.26 2.69
3975 4191 5.912892 TCTCGCATGTGGAGTAATAATTGA 58.087 37.500 6.39 0.00 33.26 2.57
3976 4192 6.424812 TGATCTCGCATGTGGAGTAATAATTG 59.575 38.462 6.39 0.00 33.26 2.32
3977 4193 6.524734 TGATCTCGCATGTGGAGTAATAATT 58.475 36.000 6.39 0.00 33.26 1.40
3978 4194 6.101650 TGATCTCGCATGTGGAGTAATAAT 57.898 37.500 6.39 0.00 33.26 1.28
3979 4195 5.529581 TGATCTCGCATGTGGAGTAATAA 57.470 39.130 6.39 0.00 33.26 1.40
3980 4196 5.301805 TCTTGATCTCGCATGTGGAGTAATA 59.698 40.000 6.39 0.00 33.26 0.98
3981 4197 4.100035 TCTTGATCTCGCATGTGGAGTAAT 59.900 41.667 6.39 0.00 33.26 1.89
3982 4198 3.447229 TCTTGATCTCGCATGTGGAGTAA 59.553 43.478 6.39 5.12 33.26 2.24
3983 4199 3.023832 TCTTGATCTCGCATGTGGAGTA 58.976 45.455 6.39 0.00 33.26 2.59
3984 4200 1.827344 TCTTGATCTCGCATGTGGAGT 59.173 47.619 6.39 0.00 33.26 3.85
3985 4201 2.591571 TCTTGATCTCGCATGTGGAG 57.408 50.000 6.39 7.93 0.00 3.86
3986 4202 2.234661 AGTTCTTGATCTCGCATGTGGA 59.765 45.455 6.39 3.19 0.00 4.02
3987 4203 2.625737 AGTTCTTGATCTCGCATGTGG 58.374 47.619 6.39 0.00 0.00 4.17
3988 4204 5.288015 AGATAGTTCTTGATCTCGCATGTG 58.712 41.667 0.00 0.00 0.00 3.21
3989 4205 5.528043 AGATAGTTCTTGATCTCGCATGT 57.472 39.130 0.00 0.00 0.00 3.21
3990 4206 9.800433 ATTATAGATAGTTCTTGATCTCGCATG 57.200 33.333 0.00 0.00 34.28 4.06
3991 4207 9.800433 CATTATAGATAGTTCTTGATCTCGCAT 57.200 33.333 0.00 0.00 34.28 4.73
3992 4208 8.246871 CCATTATAGATAGTTCTTGATCTCGCA 58.753 37.037 0.00 0.00 34.28 5.10
3993 4209 7.704472 CCCATTATAGATAGTTCTTGATCTCGC 59.296 40.741 0.00 0.00 34.28 5.03
3994 4210 7.704472 GCCCATTATAGATAGTTCTTGATCTCG 59.296 40.741 0.00 0.00 34.28 4.04
3995 4211 8.757877 AGCCCATTATAGATAGTTCTTGATCTC 58.242 37.037 0.00 0.00 34.28 2.75
3996 4212 8.677870 AGCCCATTATAGATAGTTCTTGATCT 57.322 34.615 0.00 0.00 36.40 2.75
3997 4213 9.732130 AAAGCCCATTATAGATAGTTCTTGATC 57.268 33.333 0.00 0.00 33.17 2.92
3998 4214 9.732130 GAAAGCCCATTATAGATAGTTCTTGAT 57.268 33.333 0.00 0.00 33.17 2.57
3999 4215 8.713971 TGAAAGCCCATTATAGATAGTTCTTGA 58.286 33.333 0.00 0.00 33.17 3.02
4000 4216 8.908786 TGAAAGCCCATTATAGATAGTTCTTG 57.091 34.615 0.00 0.00 33.17 3.02
4001 4217 8.938883 TCTGAAAGCCCATTATAGATAGTTCTT 58.061 33.333 0.00 0.00 33.17 2.52
4002 4218 8.497910 TCTGAAAGCCCATTATAGATAGTTCT 57.502 34.615 0.00 0.00 35.90 3.01
4003 4219 9.732130 ATTCTGAAAGCCCATTATAGATAGTTC 57.268 33.333 0.00 0.00 0.00 3.01
4004 4220 9.512588 CATTCTGAAAGCCCATTATAGATAGTT 57.487 33.333 0.00 0.00 0.00 2.24
4005 4221 7.609532 GCATTCTGAAAGCCCATTATAGATAGT 59.390 37.037 6.35 0.00 0.00 2.12
4006 4222 7.609146 TGCATTCTGAAAGCCCATTATAGATAG 59.391 37.037 14.24 0.00 0.00 2.08
4007 4223 7.391554 GTGCATTCTGAAAGCCCATTATAGATA 59.608 37.037 14.24 0.00 0.00 1.98
4008 4224 6.208204 GTGCATTCTGAAAGCCCATTATAGAT 59.792 38.462 14.24 0.00 0.00 1.98
4009 4225 5.532406 GTGCATTCTGAAAGCCCATTATAGA 59.468 40.000 14.24 0.00 0.00 1.98
4010 4226 5.561532 CGTGCATTCTGAAAGCCCATTATAG 60.562 44.000 14.24 0.00 0.00 1.31
4011 4227 4.275689 CGTGCATTCTGAAAGCCCATTATA 59.724 41.667 14.24 0.00 0.00 0.98
4012 4228 3.067180 CGTGCATTCTGAAAGCCCATTAT 59.933 43.478 14.24 0.00 0.00 1.28
4013 4229 2.423185 CGTGCATTCTGAAAGCCCATTA 59.577 45.455 14.24 0.00 0.00 1.90
4014 4230 1.203052 CGTGCATTCTGAAAGCCCATT 59.797 47.619 14.24 0.00 0.00 3.16
4015 4231 0.813184 CGTGCATTCTGAAAGCCCAT 59.187 50.000 14.24 0.00 0.00 4.00
4016 4232 0.537143 ACGTGCATTCTGAAAGCCCA 60.537 50.000 14.24 0.00 0.00 5.36
4017 4233 0.109597 CACGTGCATTCTGAAAGCCC 60.110 55.000 14.24 2.76 0.00 5.19
4018 4234 0.874390 TCACGTGCATTCTGAAAGCC 59.126 50.000 11.67 5.77 0.00 4.35
4019 4235 2.031682 AGTTCACGTGCATTCTGAAAGC 60.032 45.455 11.67 10.44 0.00 3.51
4020 4236 3.248363 TCAGTTCACGTGCATTCTGAAAG 59.752 43.478 11.67 0.00 0.00 2.62
4021 4237 3.202097 TCAGTTCACGTGCATTCTGAAA 58.798 40.909 11.67 0.00 0.00 2.69
4022 4238 2.832563 TCAGTTCACGTGCATTCTGAA 58.167 42.857 11.67 0.00 0.00 3.02
4023 4239 2.524569 TCAGTTCACGTGCATTCTGA 57.475 45.000 11.67 16.90 0.00 3.27
4024 4240 2.738314 TGATCAGTTCACGTGCATTCTG 59.262 45.455 11.67 15.03 0.00 3.02
4025 4241 3.044235 TGATCAGTTCACGTGCATTCT 57.956 42.857 11.67 3.33 0.00 2.40
4026 4242 4.346734 AATGATCAGTTCACGTGCATTC 57.653 40.909 11.67 2.52 37.11 2.67
4027 4243 6.203530 CCTATAATGATCAGTTCACGTGCATT 59.796 38.462 11.67 14.50 37.11 3.56
4028 4244 5.698089 CCTATAATGATCAGTTCACGTGCAT 59.302 40.000 11.67 3.59 37.11 3.96
4029 4245 5.049828 CCTATAATGATCAGTTCACGTGCA 58.950 41.667 11.67 0.00 37.11 4.57
4030 4246 4.449068 CCCTATAATGATCAGTTCACGTGC 59.551 45.833 11.67 0.00 37.11 5.34
4031 4247 4.449068 GCCCTATAATGATCAGTTCACGTG 59.551 45.833 9.94 9.94 37.11 4.49
4032 4248 4.632153 GCCCTATAATGATCAGTTCACGT 58.368 43.478 0.00 0.00 37.11 4.49
4033 4249 3.675225 CGCCCTATAATGATCAGTTCACG 59.325 47.826 0.00 0.00 37.11 4.35
4034 4250 4.449068 CACGCCCTATAATGATCAGTTCAC 59.551 45.833 0.00 0.00 37.11 3.18
4035 4251 4.100963 ACACGCCCTATAATGATCAGTTCA 59.899 41.667 0.00 0.00 39.12 3.18
4036 4252 4.632153 ACACGCCCTATAATGATCAGTTC 58.368 43.478 0.00 0.00 0.00 3.01
4037 4253 4.689612 ACACGCCCTATAATGATCAGTT 57.310 40.909 0.00 0.00 0.00 3.16
4038 4254 4.689612 AACACGCCCTATAATGATCAGT 57.310 40.909 0.09 0.00 0.00 3.41
4039 4255 4.214119 CCAAACACGCCCTATAATGATCAG 59.786 45.833 0.09 0.00 0.00 2.90
4040 4256 4.133820 CCAAACACGCCCTATAATGATCA 58.866 43.478 0.00 0.00 0.00 2.92
4041 4257 4.134563 ACCAAACACGCCCTATAATGATC 58.865 43.478 0.00 0.00 0.00 2.92
4042 4258 4.164843 ACCAAACACGCCCTATAATGAT 57.835 40.909 0.00 0.00 0.00 2.45
4043 4259 3.637911 ACCAAACACGCCCTATAATGA 57.362 42.857 0.00 0.00 0.00 2.57
4044 4260 4.879545 ACTAACCAAACACGCCCTATAATG 59.120 41.667 0.00 0.00 0.00 1.90
4045 4261 5.106876 ACTAACCAAACACGCCCTATAAT 57.893 39.130 0.00 0.00 0.00 1.28
4046 4262 4.556592 ACTAACCAAACACGCCCTATAA 57.443 40.909 0.00 0.00 0.00 0.98
4047 4263 4.556592 AACTAACCAAACACGCCCTATA 57.443 40.909 0.00 0.00 0.00 1.31
4048 4264 3.428413 AACTAACCAAACACGCCCTAT 57.572 42.857 0.00 0.00 0.00 2.57
4049 4265 2.934886 AACTAACCAAACACGCCCTA 57.065 45.000 0.00 0.00 0.00 3.53
4050 4266 1.951602 GAAACTAACCAAACACGCCCT 59.048 47.619 0.00 0.00 0.00 5.19
4051 4267 1.951602 AGAAACTAACCAAACACGCCC 59.048 47.619 0.00 0.00 0.00 6.13
4052 4268 3.065648 TGAAGAAACTAACCAAACACGCC 59.934 43.478 0.00 0.00 0.00 5.68
4053 4269 4.033019 GTGAAGAAACTAACCAAACACGC 58.967 43.478 0.00 0.00 0.00 5.34
4054 4270 4.594136 GGTGAAGAAACTAACCAAACACG 58.406 43.478 0.00 0.00 32.69 4.49
4055 4271 4.496840 CCGGTGAAGAAACTAACCAAACAC 60.497 45.833 0.00 0.00 32.69 3.32
4056 4272 3.628487 CCGGTGAAGAAACTAACCAAACA 59.372 43.478 0.00 0.00 32.69 2.83
4057 4273 3.004002 CCCGGTGAAGAAACTAACCAAAC 59.996 47.826 0.00 0.00 32.69 2.93
4058 4274 3.215975 CCCGGTGAAGAAACTAACCAAA 58.784 45.455 0.00 0.00 32.69 3.28
4059 4275 2.853705 CCCGGTGAAGAAACTAACCAA 58.146 47.619 0.00 0.00 32.69 3.67
4060 4276 1.543871 GCCCGGTGAAGAAACTAACCA 60.544 52.381 0.00 0.00 32.69 3.67
4061 4277 1.162698 GCCCGGTGAAGAAACTAACC 58.837 55.000 0.00 0.00 0.00 2.85
4062 4278 1.162698 GGCCCGGTGAAGAAACTAAC 58.837 55.000 0.00 0.00 0.00 2.34
4063 4279 1.061546 AGGCCCGGTGAAGAAACTAA 58.938 50.000 0.00 0.00 0.00 2.24
4064 4280 1.829222 CTAGGCCCGGTGAAGAAACTA 59.171 52.381 0.00 0.00 0.00 2.24
4065 4281 0.613777 CTAGGCCCGGTGAAGAAACT 59.386 55.000 0.00 0.00 0.00 2.66
4066 4282 1.025113 GCTAGGCCCGGTGAAGAAAC 61.025 60.000 0.00 0.00 0.00 2.78
4067 4283 1.298667 GCTAGGCCCGGTGAAGAAA 59.701 57.895 0.00 0.00 0.00 2.52
4068 4284 2.666098 GGCTAGGCCCGGTGAAGAA 61.666 63.158 4.61 0.00 44.06 2.52
4069 4285 3.081409 GGCTAGGCCCGGTGAAGA 61.081 66.667 4.61 0.00 44.06 2.87
4079 4295 0.035056 TTTTGCTCTCCTGGCTAGGC 60.035 55.000 12.10 9.85 44.22 3.93
4080 4296 2.087646 GTTTTTGCTCTCCTGGCTAGG 58.912 52.381 10.47 10.47 46.06 3.02
4081 4297 1.734465 CGTTTTTGCTCTCCTGGCTAG 59.266 52.381 0.00 0.00 0.00 3.42
4082 4298 1.346395 TCGTTTTTGCTCTCCTGGCTA 59.654 47.619 0.00 0.00 0.00 3.93
4083 4299 0.108585 TCGTTTTTGCTCTCCTGGCT 59.891 50.000 0.00 0.00 0.00 4.75
4084 4300 0.519077 CTCGTTTTTGCTCTCCTGGC 59.481 55.000 0.00 0.00 0.00 4.85
4085 4301 0.519077 GCTCGTTTTTGCTCTCCTGG 59.481 55.000 0.00 0.00 0.00 4.45
4086 4302 0.519077 GGCTCGTTTTTGCTCTCCTG 59.481 55.000 0.00 0.00 0.00 3.86
4087 4303 0.108585 TGGCTCGTTTTTGCTCTCCT 59.891 50.000 0.00 0.00 0.00 3.69
4088 4304 0.238553 GTGGCTCGTTTTTGCTCTCC 59.761 55.000 0.00 0.00 0.00 3.71
4089 4305 0.944386 TGTGGCTCGTTTTTGCTCTC 59.056 50.000 0.00 0.00 0.00 3.20
4090 4306 0.663153 GTGTGGCTCGTTTTTGCTCT 59.337 50.000 0.00 0.00 0.00 4.09
4091 4307 0.663153 AGTGTGGCTCGTTTTTGCTC 59.337 50.000 0.00 0.00 0.00 4.26
4092 4308 1.961793 TAGTGTGGCTCGTTTTTGCT 58.038 45.000 0.00 0.00 0.00 3.91
4093 4309 2.650608 CTTAGTGTGGCTCGTTTTTGC 58.349 47.619 0.00 0.00 0.00 3.68
4094 4310 2.032799 TGCTTAGTGTGGCTCGTTTTTG 59.967 45.455 0.00 0.00 0.00 2.44
4095 4311 2.290641 CTGCTTAGTGTGGCTCGTTTTT 59.709 45.455 0.00 0.00 0.00 1.94
4096 4312 1.873591 CTGCTTAGTGTGGCTCGTTTT 59.126 47.619 0.00 0.00 0.00 2.43
4097 4313 1.512926 CTGCTTAGTGTGGCTCGTTT 58.487 50.000 0.00 0.00 0.00 3.60
4098 4314 0.320771 CCTGCTTAGTGTGGCTCGTT 60.321 55.000 0.00 0.00 0.00 3.85
4099 4315 1.293498 CCTGCTTAGTGTGGCTCGT 59.707 57.895 0.00 0.00 0.00 4.18
4100 4316 1.448540 CCCTGCTTAGTGTGGCTCG 60.449 63.158 0.00 0.00 0.00 5.03
4101 4317 0.391793 GACCCTGCTTAGTGTGGCTC 60.392 60.000 0.00 0.00 0.00 4.70
4102 4318 0.838122 AGACCCTGCTTAGTGTGGCT 60.838 55.000 0.00 0.00 0.00 4.75
4103 4319 0.674895 CAGACCCTGCTTAGTGTGGC 60.675 60.000 0.00 0.00 0.00 5.01
4104 4320 0.036010 CCAGACCCTGCTTAGTGTGG 60.036 60.000 3.15 3.15 40.57 4.17
4105 4321 0.036010 CCCAGACCCTGCTTAGTGTG 60.036 60.000 0.00 0.00 0.00 3.82
4106 4322 0.473886 ACCCAGACCCTGCTTAGTGT 60.474 55.000 0.00 0.00 0.00 3.55
4107 4323 1.568504 TACCCAGACCCTGCTTAGTG 58.431 55.000 0.00 0.00 0.00 2.74
4108 4324 2.188817 CTTACCCAGACCCTGCTTAGT 58.811 52.381 0.00 0.00 0.00 2.24
4109 4325 1.486726 CCTTACCCAGACCCTGCTTAG 59.513 57.143 0.00 0.00 0.00 2.18
4110 4326 1.079825 TCCTTACCCAGACCCTGCTTA 59.920 52.381 0.00 0.00 0.00 3.09
4111 4327 0.178873 TCCTTACCCAGACCCTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
4112 4328 0.178873 TTCCTTACCCAGACCCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
4113 4329 0.696501 TTTCCTTACCCAGACCCTGC 59.303 55.000 0.00 0.00 0.00 4.85
4114 4330 3.154710 GTTTTTCCTTACCCAGACCCTG 58.845 50.000 0.00 0.00 0.00 4.45
4115 4331 2.787035 TGTTTTTCCTTACCCAGACCCT 59.213 45.455 0.00 0.00 0.00 4.34
4116 4332 3.154710 CTGTTTTTCCTTACCCAGACCC 58.845 50.000 0.00 0.00 0.00 4.46
4117 4333 3.154710 CCTGTTTTTCCTTACCCAGACC 58.845 50.000 0.00 0.00 0.00 3.85
4118 4334 3.154710 CCCTGTTTTTCCTTACCCAGAC 58.845 50.000 0.00 0.00 0.00 3.51
4119 4335 2.787035 ACCCTGTTTTTCCTTACCCAGA 59.213 45.455 0.00 0.00 0.00 3.86
4120 4336 3.238788 ACCCTGTTTTTCCTTACCCAG 57.761 47.619 0.00 0.00 0.00 4.45
4121 4337 4.810584 TTACCCTGTTTTTCCTTACCCA 57.189 40.909 0.00 0.00 0.00 4.51
4122 4338 6.482898 TTTTTACCCTGTTTTTCCTTACCC 57.517 37.500 0.00 0.00 0.00 3.69
4142 4358 7.156673 CCAATCAACTGGTCATCTCAATTTTT 58.843 34.615 0.00 0.00 0.00 1.94
4143 4359 6.694447 CCAATCAACTGGTCATCTCAATTTT 58.306 36.000 0.00 0.00 0.00 1.82
4144 4360 6.276832 CCAATCAACTGGTCATCTCAATTT 57.723 37.500 0.00 0.00 0.00 1.82
4145 4361 5.909621 CCAATCAACTGGTCATCTCAATT 57.090 39.130 0.00 0.00 0.00 2.32
4156 4372 0.037975 GCAGGCAACCAATCAACTGG 60.038 55.000 0.00 0.00 42.68 4.00
4157 4373 0.675083 TGCAGGCAACCAATCAACTG 59.325 50.000 0.00 0.00 37.17 3.16
4158 4374 1.636148 ATGCAGGCAACCAATCAACT 58.364 45.000 0.00 0.00 37.17 3.16
4159 4375 2.460757 AATGCAGGCAACCAATCAAC 57.539 45.000 0.00 0.00 37.17 3.18
4160 4376 2.496871 CCTAATGCAGGCAACCAATCAA 59.503 45.455 0.00 0.00 37.70 2.57
4161 4377 2.101783 CCTAATGCAGGCAACCAATCA 58.898 47.619 0.00 0.00 37.70 2.57
4162 4378 1.410153 CCCTAATGCAGGCAACCAATC 59.590 52.381 0.00 0.00 43.98 2.67
4163 4379 1.006998 TCCCTAATGCAGGCAACCAAT 59.993 47.619 0.00 0.00 43.98 3.16
4164 4380 0.407528 TCCCTAATGCAGGCAACCAA 59.592 50.000 0.00 0.00 43.98 3.67
4165 4381 0.630673 ATCCCTAATGCAGGCAACCA 59.369 50.000 0.00 0.00 43.98 3.67
4166 4382 1.133668 AGATCCCTAATGCAGGCAACC 60.134 52.381 0.00 0.00 43.98 3.77
4167 4383 2.355010 AGATCCCTAATGCAGGCAAC 57.645 50.000 0.00 0.00 43.98 4.17
4168 4384 2.025037 ACAAGATCCCTAATGCAGGCAA 60.025 45.455 0.00 0.00 43.98 4.52
4169 4385 1.565759 ACAAGATCCCTAATGCAGGCA 59.434 47.619 0.00 0.00 43.98 4.75
4170 4386 2.225467 GACAAGATCCCTAATGCAGGC 58.775 52.381 0.00 0.00 43.98 4.85
4171 4387 3.565764 TGACAAGATCCCTAATGCAGG 57.434 47.619 0.00 0.00 45.07 4.85
4172 4388 5.128205 TCAATGACAAGATCCCTAATGCAG 58.872 41.667 0.00 0.00 0.00 4.41
4173 4389 5.104402 TCTCAATGACAAGATCCCTAATGCA 60.104 40.000 0.00 0.00 0.00 3.96
4174 4390 5.371526 TCTCAATGACAAGATCCCTAATGC 58.628 41.667 0.00 0.00 0.00 3.56
4175 4391 6.072618 GCATCTCAATGACAAGATCCCTAATG 60.073 42.308 0.00 0.00 34.61 1.90
4176 4392 6.002704 GCATCTCAATGACAAGATCCCTAAT 58.997 40.000 0.00 0.00 34.61 1.73
4177 4393 5.104402 TGCATCTCAATGACAAGATCCCTAA 60.104 40.000 0.00 0.00 34.61 2.69
4178 4394 4.409901 TGCATCTCAATGACAAGATCCCTA 59.590 41.667 0.00 0.00 34.61 3.53
4179 4395 3.201487 TGCATCTCAATGACAAGATCCCT 59.799 43.478 0.00 0.00 34.61 4.20
4180 4396 3.548770 TGCATCTCAATGACAAGATCCC 58.451 45.455 0.00 0.00 34.61 3.85
4181 4397 5.769484 AATGCATCTCAATGACAAGATCC 57.231 39.130 0.00 0.00 34.61 3.36
4182 4398 7.758076 TGAAAAATGCATCTCAATGACAAGATC 59.242 33.333 0.00 0.00 34.61 2.75
4183 4399 7.608153 TGAAAAATGCATCTCAATGACAAGAT 58.392 30.769 0.00 0.00 34.61 2.40
4184 4400 6.983984 TGAAAAATGCATCTCAATGACAAGA 58.016 32.000 0.00 0.00 34.61 3.02
4185 4401 7.827819 ATGAAAAATGCATCTCAATGACAAG 57.172 32.000 0.00 0.00 34.61 3.16
4186 4402 7.062488 CGAATGAAAAATGCATCTCAATGACAA 59.938 33.333 0.00 0.00 34.61 3.18
4187 4403 6.528774 CGAATGAAAAATGCATCTCAATGACA 59.471 34.615 0.00 0.00 34.61 3.58
4188 4404 6.020121 CCGAATGAAAAATGCATCTCAATGAC 60.020 38.462 0.00 0.00 34.61 3.06
4189 4405 6.037726 CCGAATGAAAAATGCATCTCAATGA 58.962 36.000 0.00 0.00 34.61 2.57
4190 4406 5.276678 GCCGAATGAAAAATGCATCTCAATG 60.277 40.000 0.00 0.00 35.87 2.82
4191 4407 4.807304 GCCGAATGAAAAATGCATCTCAAT 59.193 37.500 0.00 0.00 0.00 2.57
4192 4408 4.175516 GCCGAATGAAAAATGCATCTCAA 58.824 39.130 0.00 0.00 0.00 3.02
4193 4409 3.731565 CGCCGAATGAAAAATGCATCTCA 60.732 43.478 0.00 4.02 0.00 3.27
4194 4410 2.785477 CGCCGAATGAAAAATGCATCTC 59.215 45.455 0.00 0.00 0.00 2.75
4195 4411 2.164219 ACGCCGAATGAAAAATGCATCT 59.836 40.909 0.00 0.00 0.00 2.90
4196 4412 2.529151 ACGCCGAATGAAAAATGCATC 58.471 42.857 0.00 0.00 0.00 3.91
4197 4413 2.652941 ACGCCGAATGAAAAATGCAT 57.347 40.000 0.00 0.00 0.00 3.96
4198 4414 2.430546 AACGCCGAATGAAAAATGCA 57.569 40.000 0.00 0.00 0.00 3.96
4199 4415 2.159854 CCAAACGCCGAATGAAAAATGC 60.160 45.455 0.00 0.00 0.00 3.56
4200 4416 3.056304 ACCAAACGCCGAATGAAAAATG 58.944 40.909 0.00 0.00 0.00 2.32
4201 4417 3.378911 ACCAAACGCCGAATGAAAAAT 57.621 38.095 0.00 0.00 0.00 1.82
4202 4418 2.860735 CAACCAAACGCCGAATGAAAAA 59.139 40.909 0.00 0.00 0.00 1.94
4203 4419 2.464865 CAACCAAACGCCGAATGAAAA 58.535 42.857 0.00 0.00 0.00 2.29
4204 4420 1.866063 GCAACCAAACGCCGAATGAAA 60.866 47.619 0.00 0.00 0.00 2.69
4205 4421 0.318275 GCAACCAAACGCCGAATGAA 60.318 50.000 0.00 0.00 0.00 2.57
4206 4422 1.284408 GCAACCAAACGCCGAATGA 59.716 52.632 0.00 0.00 0.00 2.57
4207 4423 0.388391 ATGCAACCAAACGCCGAATG 60.388 50.000 0.00 0.00 0.00 2.67
4208 4424 1.135517 GTATGCAACCAAACGCCGAAT 60.136 47.619 0.00 0.00 0.00 3.34
4209 4425 0.238817 GTATGCAACCAAACGCCGAA 59.761 50.000 0.00 0.00 0.00 4.30
4210 4426 0.885150 TGTATGCAACCAAACGCCGA 60.885 50.000 0.00 0.00 0.00 5.54
4211 4427 0.170116 ATGTATGCAACCAAACGCCG 59.830 50.000 0.00 0.00 0.00 6.46
4212 4428 1.627879 CATGTATGCAACCAAACGCC 58.372 50.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.