Multiple sequence alignment - TraesCS7D01G277700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G277700 chr7D 100.000 2909 0 0 1 2909 266873832 266876740 0.000000e+00 5373.0
1 TraesCS7D01G277700 chr7D 98.675 302 3 1 2324 2625 169473552 169473852 4.270000e-148 534.0
2 TraesCS7D01G277700 chr7D 92.391 368 13 5 2323 2677 21760733 21761098 7.190000e-141 510.0
3 TraesCS7D01G277700 chr7D 98.258 287 5 0 2324 2610 602024970 602024684 1.200000e-138 503.0
4 TraesCS7D01G277700 chr7D 97.967 246 5 0 2664 2909 169474059 169474304 7.450000e-116 427.0
5 TraesCS7D01G277700 chr7B 96.270 1555 37 5 776 2328 247264923 247263388 0.000000e+00 2531.0
6 TraesCS7D01G277700 chr7A 95.943 1553 34 5 776 2325 292818633 292820159 0.000000e+00 2492.0
7 TraesCS7D01G277700 chr7A 83.151 457 44 16 1 443 19747324 19747761 1.260000e-103 387.0
8 TraesCS7D01G277700 chr7A 94.413 179 8 1 600 776 292818389 292818567 1.030000e-69 274.0
9 TraesCS7D01G277700 chr1D 97.623 589 11 3 2321 2909 57212952 57213537 0.000000e+00 1007.0
10 TraesCS7D01G277700 chr1D 91.171 589 14 18 2321 2909 226953174 226953724 0.000000e+00 765.0
11 TraesCS7D01G277700 chr1D 98.006 351 4 3 2559 2909 318649650 318649997 8.920000e-170 606.0
12 TraesCS7D01G277700 chr1D 95.935 246 10 0 2324 2569 318648925 318649170 1.620000e-107 399.0
13 TraesCS7D01G277700 chr4D 95.939 394 12 3 43 434 504546657 504547048 1.140000e-178 636.0
14 TraesCS7D01G277700 chr4D 95.770 331 10 4 2324 2654 51342419 51342745 5.520000e-147 531.0
15 TraesCS7D01G277700 chr4D 88.053 226 27 0 1 226 440250188 440250413 4.780000e-68 268.0
16 TraesCS7D01G277700 chr4D 87.611 226 27 1 1 226 62757659 62757435 8.000000e-66 261.0
17 TraesCS7D01G277700 chr2D 97.947 341 7 0 43 383 355324057 355323717 2.500000e-165 592.0
18 TraesCS7D01G277700 chr2D 87.611 226 27 1 1 226 482358456 482358232 8.000000e-66 261.0
19 TraesCS7D01G277700 chr2D 93.846 65 2 1 376 438 355323701 355323637 2.390000e-16 97.1
20 TraesCS7D01G277700 chr5D 94.964 278 8 1 2324 2601 42559418 42559689 5.760000e-117 431.0
21 TraesCS7D01G277700 chr5D 94.583 240 4 1 2679 2909 42560110 42560349 2.130000e-96 363.0
22 TraesCS7D01G277700 chr5D 88.496 226 26 0 1 226 35325242 35325017 1.030000e-69 274.0
23 TraesCS7D01G277700 chr5D 87.500 176 15 6 435 609 478598119 478598288 2.290000e-46 196.0
24 TraesCS7D01G277700 chr3D 97.881 236 5 0 2324 2559 562384091 562383856 2.700000e-110 409.0
25 TraesCS7D01G277700 chr3D 87.611 226 28 0 1 226 503045421 503045196 2.220000e-66 263.0
26 TraesCS7D01G277700 chr4A 91.156 294 17 2 152 436 556685987 556685694 9.770000e-105 390.0
27 TraesCS7D01G277700 chr4A 94.231 52 3 0 2835 2886 521864083 521864134 2.400000e-11 80.5
28 TraesCS7D01G277700 chr1B 91.220 205 11 2 232 434 641522633 641522832 3.690000e-69 272.0
29 TraesCS7D01G277700 chr1B 87.611 226 27 1 1 226 327027623 327027847 8.000000e-66 261.0
30 TraesCS7D01G277700 chr1B 86.905 168 15 6 435 601 483881236 483881075 6.400000e-42 182.0
31 TraesCS7D01G277700 chr5B 87.611 226 28 0 1 226 450563939 450563714 2.220000e-66 263.0
32 TraesCS7D01G277700 chr3B 96.795 156 5 0 2754 2909 806123760 806123915 8.000000e-66 261.0
33 TraesCS7D01G277700 chr3B 93.296 179 5 2 260 436 223039272 223039099 1.030000e-64 257.0
34 TraesCS7D01G277700 chr2B 96.795 156 5 0 2754 2909 442921008 442921163 8.000000e-66 261.0
35 TraesCS7D01G277700 chr6A 96.154 156 6 0 2754 2909 162425722 162425567 3.720000e-64 255.0
36 TraesCS7D01G277700 chr1A 93.064 173 5 2 265 435 559804136 559803969 2.240000e-61 246.0
37 TraesCS7D01G277700 chr5A 84.058 138 18 4 439 574 579219670 579219805 2.350000e-26 130.0
38 TraesCS7D01G277700 chr2A 83.696 92 12 2 348 437 737730610 737730700 1.860000e-12 84.2
39 TraesCS7D01G277700 chr6B 83.333 90 11 4 347 434 54148611 54148698 2.400000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G277700 chr7D 266873832 266876740 2908 False 5373.0 5373 100.0000 1 2909 1 chr7D.!!$F2 2908
1 TraesCS7D01G277700 chr7D 169473552 169474304 752 False 480.5 534 98.3210 2324 2909 2 chr7D.!!$F3 585
2 TraesCS7D01G277700 chr7B 247263388 247264923 1535 True 2531.0 2531 96.2700 776 2328 1 chr7B.!!$R1 1552
3 TraesCS7D01G277700 chr7A 292818389 292820159 1770 False 1383.0 2492 95.1780 600 2325 2 chr7A.!!$F2 1725
4 TraesCS7D01G277700 chr1D 57212952 57213537 585 False 1007.0 1007 97.6230 2321 2909 1 chr1D.!!$F1 588
5 TraesCS7D01G277700 chr1D 226953174 226953724 550 False 765.0 765 91.1710 2321 2909 1 chr1D.!!$F2 588
6 TraesCS7D01G277700 chr1D 318648925 318649997 1072 False 502.5 606 96.9705 2324 2909 2 chr1D.!!$F3 585
7 TraesCS7D01G277700 chr5D 42559418 42560349 931 False 397.0 431 94.7735 2324 2909 2 chr5D.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 716 0.034896 AGCGTGAAACATTCCTCGGT 59.965 50.0 0.0 0.0 35.74 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2040 7.042725 CGTATTTCATGAACGAGGTACATTGAT 60.043 37.037 7.89 0.0 38.89 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.077844 TTTGCTTCATCGGCTGCA 57.922 50.000 0.50 0.00 0.00 4.41
18 19 1.878070 TTTGCTTCATCGGCTGCAG 59.122 52.632 10.11 10.11 36.75 4.41
19 20 0.606130 TTTGCTTCATCGGCTGCAGA 60.606 50.000 20.43 4.68 36.75 4.26
20 21 1.022982 TTGCTTCATCGGCTGCAGAG 61.023 55.000 20.43 10.80 36.75 3.35
21 22 2.821688 GCTTCATCGGCTGCAGAGC 61.822 63.158 20.43 11.93 45.40 4.09
22 23 1.153409 CTTCATCGGCTGCAGAGCT 60.153 57.895 20.43 0.00 45.44 4.09
23 24 1.152989 CTTCATCGGCTGCAGAGCTC 61.153 60.000 20.43 5.27 45.44 4.09
24 25 1.611474 TTCATCGGCTGCAGAGCTCT 61.611 55.000 20.43 11.45 45.44 4.09
25 26 1.592131 CATCGGCTGCAGAGCTCTC 60.592 63.158 20.43 9.65 45.44 3.20
26 27 2.056815 ATCGGCTGCAGAGCTCTCA 61.057 57.895 20.43 13.79 45.44 3.27
27 28 1.611474 ATCGGCTGCAGAGCTCTCAA 61.611 55.000 20.43 3.78 45.44 3.02
28 29 1.375140 CGGCTGCAGAGCTCTCAAA 60.375 57.895 20.43 0.96 45.44 2.69
29 30 0.743701 CGGCTGCAGAGCTCTCAAAT 60.744 55.000 20.43 0.00 45.44 2.32
30 31 0.733729 GGCTGCAGAGCTCTCAAATG 59.266 55.000 20.43 4.18 45.44 2.32
31 32 1.451067 GCTGCAGAGCTCTCAAATGT 58.549 50.000 20.43 0.00 42.52 2.71
32 33 1.811359 GCTGCAGAGCTCTCAAATGTT 59.189 47.619 20.43 0.00 42.52 2.71
33 34 2.228343 GCTGCAGAGCTCTCAAATGTTT 59.772 45.455 20.43 0.00 42.52 2.83
34 35 3.670091 GCTGCAGAGCTCTCAAATGTTTC 60.670 47.826 20.43 0.00 42.52 2.78
35 36 2.816087 TGCAGAGCTCTCAAATGTTTCC 59.184 45.455 14.96 0.00 0.00 3.13
36 37 3.080319 GCAGAGCTCTCAAATGTTTCCT 58.920 45.455 14.96 0.00 0.00 3.36
37 38 3.119919 GCAGAGCTCTCAAATGTTTCCTG 60.120 47.826 14.96 0.00 0.00 3.86
38 39 4.070716 CAGAGCTCTCAAATGTTTCCTGT 58.929 43.478 14.96 0.00 0.00 4.00
39 40 4.153835 CAGAGCTCTCAAATGTTTCCTGTC 59.846 45.833 14.96 0.00 0.00 3.51
40 41 4.067896 GAGCTCTCAAATGTTTCCTGTCA 58.932 43.478 6.43 0.00 0.00 3.58
41 42 4.660168 AGCTCTCAAATGTTTCCTGTCAT 58.340 39.130 0.00 0.00 0.00 3.06
42 43 5.075493 AGCTCTCAAATGTTTCCTGTCATT 58.925 37.500 0.00 0.00 36.07 2.57
43 44 5.537674 AGCTCTCAAATGTTTCCTGTCATTT 59.462 36.000 0.00 0.00 42.53 2.32
44 45 6.041296 AGCTCTCAAATGTTTCCTGTCATTTT 59.959 34.615 0.00 0.00 40.70 1.82
45 46 6.703165 GCTCTCAAATGTTTCCTGTCATTTTT 59.297 34.615 0.00 0.00 40.70 1.94
46 47 7.306983 GCTCTCAAATGTTTCCTGTCATTTTTG 60.307 37.037 0.00 0.00 40.70 2.44
47 48 6.479660 TCTCAAATGTTTCCTGTCATTTTTGC 59.520 34.615 0.00 0.00 40.70 3.68
48 49 6.347696 TCAAATGTTTCCTGTCATTTTTGCT 58.652 32.000 0.00 0.00 40.70 3.91
49 50 7.495901 TCAAATGTTTCCTGTCATTTTTGCTA 58.504 30.769 0.00 0.00 40.70 3.49
50 51 7.652909 TCAAATGTTTCCTGTCATTTTTGCTAG 59.347 33.333 0.00 0.00 40.70 3.42
51 52 6.899393 ATGTTTCCTGTCATTTTTGCTAGA 57.101 33.333 0.00 0.00 0.00 2.43
52 53 6.707440 TGTTTCCTGTCATTTTTGCTAGAA 57.293 33.333 0.00 0.00 0.00 2.10
53 54 6.738114 TGTTTCCTGTCATTTTTGCTAGAAG 58.262 36.000 0.00 0.00 0.00 2.85
54 55 5.376854 TTCCTGTCATTTTTGCTAGAAGC 57.623 39.130 0.00 0.00 42.82 3.86
55 56 3.436704 TCCTGTCATTTTTGCTAGAAGCG 59.563 43.478 0.00 0.00 46.26 4.68
56 57 3.189287 CCTGTCATTTTTGCTAGAAGCGT 59.811 43.478 0.00 0.00 46.26 5.07
57 58 4.320494 CCTGTCATTTTTGCTAGAAGCGTT 60.320 41.667 0.00 0.00 46.26 4.84
58 59 4.536065 TGTCATTTTTGCTAGAAGCGTTG 58.464 39.130 0.00 0.00 46.26 4.10
59 60 4.036262 TGTCATTTTTGCTAGAAGCGTTGT 59.964 37.500 0.00 0.00 46.26 3.32
60 61 4.976116 GTCATTTTTGCTAGAAGCGTTGTT 59.024 37.500 0.00 0.00 46.26 2.83
61 62 5.115622 GTCATTTTTGCTAGAAGCGTTGTTC 59.884 40.000 0.00 0.00 46.26 3.18
62 63 2.941891 TTTGCTAGAAGCGTTGTTCG 57.058 45.000 0.00 0.00 46.26 3.95
63 64 2.143008 TTGCTAGAAGCGTTGTTCGA 57.857 45.000 0.00 0.00 46.26 3.71
64 65 2.363788 TGCTAGAAGCGTTGTTCGAT 57.636 45.000 0.00 0.00 46.26 3.59
70 71 2.774439 AAGCGTTGTTCGATTTTGCT 57.226 40.000 0.00 0.00 46.04 3.91
71 72 2.036556 AGCGTTGTTCGATTTTGCTG 57.963 45.000 0.00 0.00 42.86 4.41
72 73 1.052287 GCGTTGTTCGATTTTGCTGG 58.948 50.000 0.00 0.00 42.86 4.85
73 74 1.334599 GCGTTGTTCGATTTTGCTGGA 60.335 47.619 0.00 0.00 42.86 3.86
74 75 2.856720 GCGTTGTTCGATTTTGCTGGAA 60.857 45.455 0.00 0.00 42.86 3.53
75 76 2.973224 CGTTGTTCGATTTTGCTGGAAG 59.027 45.455 0.00 0.00 42.86 3.46
88 89 2.468532 CTGGAAGCGTTGTTCGTTTT 57.531 45.000 0.00 0.00 42.51 2.43
89 90 2.792749 CTGGAAGCGTTGTTCGTTTTT 58.207 42.857 0.00 0.00 42.51 1.94
90 91 2.520979 TGGAAGCGTTGTTCGTTTTTG 58.479 42.857 0.00 0.00 42.51 2.44
91 92 1.254313 GGAAGCGTTGTTCGTTTTTGC 59.746 47.619 0.00 0.00 42.51 3.68
92 93 2.182014 GAAGCGTTGTTCGTTTTTGCT 58.818 42.857 0.00 0.00 42.51 3.91
93 94 2.271821 AGCGTTGTTCGTTTTTGCTT 57.728 40.000 0.00 0.00 42.13 3.91
94 95 2.182014 AGCGTTGTTCGTTTTTGCTTC 58.818 42.857 0.00 0.00 42.13 3.86
95 96 1.914700 GCGTTGTTCGTTTTTGCTTCA 59.085 42.857 0.00 0.00 42.13 3.02
96 97 2.342948 GCGTTGTTCGTTTTTGCTTCAA 59.657 40.909 0.00 0.00 42.13 2.69
97 98 3.776478 GCGTTGTTCGTTTTTGCTTCAAC 60.776 43.478 0.00 0.00 42.13 3.18
98 99 3.241520 CGTTGTTCGTTTTTGCTTCAACC 60.242 43.478 0.00 0.00 32.84 3.77
99 100 2.520979 TGTTCGTTTTTGCTTCAACCG 58.479 42.857 0.00 0.00 0.00 4.44
100 101 2.161808 TGTTCGTTTTTGCTTCAACCGA 59.838 40.909 0.00 0.00 0.00 4.69
101 102 2.461897 TCGTTTTTGCTTCAACCGAC 57.538 45.000 0.00 0.00 0.00 4.79
102 103 1.064357 TCGTTTTTGCTTCAACCGACC 59.936 47.619 0.00 0.00 0.00 4.79
103 104 1.202200 CGTTTTTGCTTCAACCGACCA 60.202 47.619 0.00 0.00 0.00 4.02
104 105 2.190161 GTTTTTGCTTCAACCGACCAC 58.810 47.619 0.00 0.00 0.00 4.16
105 106 0.741915 TTTTGCTTCAACCGACCACC 59.258 50.000 0.00 0.00 0.00 4.61
106 107 1.440938 TTTGCTTCAACCGACCACCG 61.441 55.000 0.00 0.00 38.18 4.94
115 116 3.048602 CGACCACCGGAGTTCTGT 58.951 61.111 9.46 0.00 33.91 3.41
116 117 2.260247 CGACCACCGGAGTTCTGTA 58.740 57.895 9.46 0.00 33.91 2.74
117 118 0.170561 CGACCACCGGAGTTCTGTAG 59.829 60.000 9.46 0.00 33.91 2.74
118 119 0.531200 GACCACCGGAGTTCTGTAGG 59.469 60.000 9.46 0.00 0.00 3.18
119 120 0.178941 ACCACCGGAGTTCTGTAGGT 60.179 55.000 9.46 0.00 35.24 3.08
120 121 1.076024 ACCACCGGAGTTCTGTAGGTA 59.924 52.381 9.46 0.00 33.30 3.08
121 122 1.475682 CCACCGGAGTTCTGTAGGTAC 59.524 57.143 9.46 0.00 33.30 3.34
122 123 1.131883 CACCGGAGTTCTGTAGGTACG 59.868 57.143 9.46 0.00 33.30 3.67
123 124 1.003580 ACCGGAGTTCTGTAGGTACGA 59.996 52.381 9.46 0.00 32.76 3.43
124 125 2.295885 CCGGAGTTCTGTAGGTACGAT 58.704 52.381 0.00 0.00 0.00 3.73
125 126 2.033049 CCGGAGTTCTGTAGGTACGATG 59.967 54.545 0.00 0.00 0.00 3.84
126 127 2.541178 CGGAGTTCTGTAGGTACGATGC 60.541 54.545 0.00 0.00 0.00 3.91
127 128 2.426024 GGAGTTCTGTAGGTACGATGCA 59.574 50.000 0.00 0.00 0.00 3.96
128 129 3.068307 GGAGTTCTGTAGGTACGATGCAT 59.932 47.826 0.00 0.00 0.00 3.96
129 130 4.045104 GAGTTCTGTAGGTACGATGCATG 58.955 47.826 2.46 0.00 0.00 4.06
130 131 3.447586 AGTTCTGTAGGTACGATGCATGT 59.552 43.478 2.46 5.42 0.00 3.21
131 132 3.710326 TCTGTAGGTACGATGCATGTC 57.290 47.619 2.46 0.00 0.00 3.06
132 133 2.032924 TCTGTAGGTACGATGCATGTCG 59.967 50.000 2.46 5.94 46.56 4.35
133 134 2.018515 TGTAGGTACGATGCATGTCGA 58.981 47.619 16.17 0.00 44.06 4.20
134 135 2.621526 TGTAGGTACGATGCATGTCGAT 59.378 45.455 16.17 3.86 44.06 3.59
135 136 2.140065 AGGTACGATGCATGTCGATG 57.860 50.000 16.17 0.00 44.06 3.84
136 137 1.139989 GGTACGATGCATGTCGATGG 58.860 55.000 16.17 0.00 44.06 3.51
137 138 1.269569 GGTACGATGCATGTCGATGGA 60.270 52.381 16.17 0.00 44.06 3.41
138 139 2.054363 GTACGATGCATGTCGATGGAG 58.946 52.381 16.17 0.00 44.06 3.86
139 140 0.249615 ACGATGCATGTCGATGGAGG 60.250 55.000 16.17 0.00 44.06 4.30
140 141 1.563435 CGATGCATGTCGATGGAGGC 61.563 60.000 2.46 0.00 44.06 4.70
141 142 1.228063 ATGCATGTCGATGGAGGCC 60.228 57.895 0.00 0.00 32.78 5.19
142 143 1.986632 ATGCATGTCGATGGAGGCCA 61.987 55.000 5.01 0.00 38.19 5.36
143 144 1.890979 GCATGTCGATGGAGGCCAG 60.891 63.158 5.01 0.00 36.75 4.85
144 145 1.890979 CATGTCGATGGAGGCCAGC 60.891 63.158 5.01 0.00 36.75 4.85
145 146 2.369633 ATGTCGATGGAGGCCAGCA 61.370 57.895 5.01 0.00 40.32 4.41
146 147 2.202987 GTCGATGGAGGCCAGCAG 60.203 66.667 5.01 0.00 40.32 4.24
147 148 2.364186 TCGATGGAGGCCAGCAGA 60.364 61.111 5.01 0.00 40.32 4.26
148 149 2.108566 CGATGGAGGCCAGCAGAG 59.891 66.667 5.01 0.00 40.32 3.35
149 150 2.429767 CGATGGAGGCCAGCAGAGA 61.430 63.158 5.01 0.00 40.32 3.10
150 151 1.145819 GATGGAGGCCAGCAGAGAC 59.854 63.158 5.01 0.00 40.02 3.36
151 152 2.641439 GATGGAGGCCAGCAGAGACG 62.641 65.000 5.01 0.00 40.02 4.18
152 153 4.154347 GGAGGCCAGCAGAGACGG 62.154 72.222 5.01 0.00 0.00 4.79
153 154 4.828925 GAGGCCAGCAGAGACGGC 62.829 72.222 5.01 0.00 45.47 5.68
183 184 4.176851 GAGCTCGACGACGGGGAC 62.177 72.222 9.58 0.00 40.74 4.46
185 186 4.047059 GCTCGACGACGGGGACAA 62.047 66.667 9.58 0.00 40.74 3.18
186 187 2.646719 CTCGACGACGGGGACAAA 59.353 61.111 7.55 0.00 40.21 2.83
187 188 1.007038 CTCGACGACGGGGACAAAA 60.007 57.895 7.55 0.00 40.21 2.44
188 189 1.007038 TCGACGACGGGGACAAAAG 60.007 57.895 7.55 0.00 40.21 2.27
189 190 2.025418 CGACGACGGGGACAAAAGG 61.025 63.158 0.00 0.00 35.72 3.11
190 191 1.670083 GACGACGGGGACAAAAGGG 60.670 63.158 0.00 0.00 0.00 3.95
191 192 2.359478 CGACGGGGACAAAAGGGG 60.359 66.667 0.00 0.00 0.00 4.79
192 193 2.035155 GACGGGGACAAAAGGGGG 59.965 66.667 0.00 0.00 0.00 5.40
193 194 2.779598 ACGGGGACAAAAGGGGGT 60.780 61.111 0.00 0.00 0.00 4.95
194 195 2.282887 CGGGGACAAAAGGGGGTG 60.283 66.667 0.00 0.00 0.00 4.61
195 196 2.119611 GGGGACAAAAGGGGGTGG 59.880 66.667 0.00 0.00 0.00 4.61
196 197 2.119611 GGGACAAAAGGGGGTGGG 59.880 66.667 0.00 0.00 0.00 4.61
197 198 2.119611 GGACAAAAGGGGGTGGGG 59.880 66.667 0.00 0.00 0.00 4.96
198 199 2.119611 GACAAAAGGGGGTGGGGG 59.880 66.667 0.00 0.00 0.00 5.40
199 200 2.371811 ACAAAAGGGGGTGGGGGA 60.372 61.111 0.00 0.00 0.00 4.81
200 201 2.119611 CAAAAGGGGGTGGGGGAC 59.880 66.667 0.00 0.00 0.00 4.46
213 214 3.050275 GGGACCAGACGCTGCAAC 61.050 66.667 0.00 0.00 0.00 4.17
214 215 3.050275 GGACCAGACGCTGCAACC 61.050 66.667 0.00 1.97 0.00 3.77
215 216 3.414700 GACCAGACGCTGCAACCG 61.415 66.667 0.00 5.02 0.00 4.44
274 275 2.280524 CGCACAACGGTGGAAGGA 60.281 61.111 4.97 0.00 45.38 3.36
275 276 2.317609 CGCACAACGGTGGAAGGAG 61.318 63.158 4.97 0.00 45.38 3.69
276 277 1.966451 GCACAACGGTGGAAGGAGG 60.966 63.158 4.97 0.00 45.38 4.30
277 278 1.752198 CACAACGGTGGAAGGAGGA 59.248 57.895 4.97 0.00 41.45 3.71
278 279 0.324943 CACAACGGTGGAAGGAGGAT 59.675 55.000 4.97 0.00 41.45 3.24
279 280 1.064825 ACAACGGTGGAAGGAGGATT 58.935 50.000 4.97 0.00 0.00 3.01
280 281 1.271379 ACAACGGTGGAAGGAGGATTG 60.271 52.381 4.97 0.00 0.00 2.67
281 282 0.328258 AACGGTGGAAGGAGGATTGG 59.672 55.000 0.00 0.00 0.00 3.16
282 283 1.452108 CGGTGGAAGGAGGATTGGC 60.452 63.158 0.00 0.00 0.00 4.52
283 284 1.915078 CGGTGGAAGGAGGATTGGCT 61.915 60.000 0.00 0.00 0.00 4.75
284 285 0.394899 GGTGGAAGGAGGATTGGCTG 60.395 60.000 0.00 0.00 0.00 4.85
285 286 0.394899 GTGGAAGGAGGATTGGCTGG 60.395 60.000 0.00 0.00 0.00 4.85
286 287 1.228510 GGAAGGAGGATTGGCTGGG 59.771 63.158 0.00 0.00 0.00 4.45
287 288 1.575447 GGAAGGAGGATTGGCTGGGT 61.575 60.000 0.00 0.00 0.00 4.51
288 289 0.394899 GAAGGAGGATTGGCTGGGTG 60.395 60.000 0.00 0.00 0.00 4.61
289 290 1.867595 AAGGAGGATTGGCTGGGTGG 61.868 60.000 0.00 0.00 0.00 4.61
290 291 2.276740 GAGGATTGGCTGGGTGGG 59.723 66.667 0.00 0.00 0.00 4.61
291 292 3.350163 AGGATTGGCTGGGTGGGG 61.350 66.667 0.00 0.00 0.00 4.96
292 293 4.463788 GGATTGGCTGGGTGGGGG 62.464 72.222 0.00 0.00 0.00 5.40
299 300 2.523168 CTGGGTGGGGGCGTTTTT 60.523 61.111 0.00 0.00 0.00 1.94
316 317 3.708563 TTTTTCTGGAAGCTTTGACCG 57.291 42.857 0.00 0.00 0.00 4.79
317 318 2.631160 TTTCTGGAAGCTTTGACCGA 57.369 45.000 0.00 0.00 0.00 4.69
318 319 2.631160 TTCTGGAAGCTTTGACCGAA 57.369 45.000 0.00 3.49 0.00 4.30
319 320 2.169832 TCTGGAAGCTTTGACCGAAG 57.830 50.000 0.00 0.00 0.00 3.79
334 335 1.884756 CGAAGGAAGAACGAGTCGAG 58.115 55.000 21.50 0.00 0.00 4.04
335 336 1.466024 CGAAGGAAGAACGAGTCGAGG 60.466 57.143 21.50 0.00 0.00 4.63
336 337 0.889306 AAGGAAGAACGAGTCGAGGG 59.111 55.000 21.50 0.00 0.00 4.30
337 338 0.251253 AGGAAGAACGAGTCGAGGGT 60.251 55.000 21.50 1.06 0.00 4.34
338 339 1.004044 AGGAAGAACGAGTCGAGGGTA 59.996 52.381 21.50 0.00 0.00 3.69
339 340 1.401199 GGAAGAACGAGTCGAGGGTAG 59.599 57.143 21.50 0.00 0.00 3.18
340 341 2.354259 GAAGAACGAGTCGAGGGTAGA 58.646 52.381 21.50 0.00 0.00 2.59
341 342 2.027003 AGAACGAGTCGAGGGTAGAG 57.973 55.000 21.50 0.00 0.00 2.43
342 343 1.278699 AGAACGAGTCGAGGGTAGAGT 59.721 52.381 21.50 0.00 0.00 3.24
343 344 2.083002 GAACGAGTCGAGGGTAGAGTT 58.917 52.381 21.50 0.00 0.00 3.01
344 345 1.451067 ACGAGTCGAGGGTAGAGTTG 58.549 55.000 21.50 0.00 0.00 3.16
345 346 0.099082 CGAGTCGAGGGTAGAGTTGC 59.901 60.000 6.73 0.00 0.00 4.17
346 347 0.456628 GAGTCGAGGGTAGAGTTGCC 59.543 60.000 0.00 0.00 0.00 4.52
347 348 0.251653 AGTCGAGGGTAGAGTTGCCA 60.252 55.000 0.00 0.00 0.00 4.92
348 349 0.173708 GTCGAGGGTAGAGTTGCCAG 59.826 60.000 0.00 0.00 0.00 4.85
349 350 0.039180 TCGAGGGTAGAGTTGCCAGA 59.961 55.000 0.00 0.00 0.00 3.86
350 351 1.115467 CGAGGGTAGAGTTGCCAGAT 58.885 55.000 0.00 0.00 0.00 2.90
351 352 1.067821 CGAGGGTAGAGTTGCCAGATC 59.932 57.143 0.00 0.00 0.00 2.75
352 353 1.067821 GAGGGTAGAGTTGCCAGATCG 59.932 57.143 0.00 0.00 0.00 3.69
353 354 0.105039 GGGTAGAGTTGCCAGATCGG 59.895 60.000 0.00 0.00 38.11 4.18
354 355 1.112113 GGTAGAGTTGCCAGATCGGA 58.888 55.000 7.64 0.00 36.56 4.55
355 356 1.202428 GGTAGAGTTGCCAGATCGGAC 60.202 57.143 7.64 0.00 36.56 4.79
356 357 0.738975 TAGAGTTGCCAGATCGGACG 59.261 55.000 7.64 0.00 36.56 4.79
357 358 1.519455 GAGTTGCCAGATCGGACGG 60.519 63.158 7.64 0.00 36.56 4.79
358 359 2.227089 GAGTTGCCAGATCGGACGGT 62.227 60.000 7.64 0.00 36.56 4.83
359 360 1.375523 GTTGCCAGATCGGACGGTT 60.376 57.895 7.64 0.00 36.56 4.44
360 361 1.079405 TTGCCAGATCGGACGGTTC 60.079 57.895 7.64 0.00 36.56 3.62
361 362 2.202892 GCCAGATCGGACGGTTCC 60.203 66.667 7.64 0.00 38.77 3.62
370 371 3.818787 GACGGTTCCGGCTCGCTA 61.819 66.667 15.66 0.00 34.17 4.26
371 372 4.125695 ACGGTTCCGGCTCGCTAC 62.126 66.667 15.66 0.00 0.00 3.58
372 373 4.124351 CGGTTCCGGCTCGCTACA 62.124 66.667 0.00 0.00 0.00 2.74
373 374 2.499685 GGTTCCGGCTCGCTACAT 59.500 61.111 0.00 0.00 0.00 2.29
374 375 1.153429 GGTTCCGGCTCGCTACATT 60.153 57.895 0.00 0.00 0.00 2.71
375 376 1.429148 GGTTCCGGCTCGCTACATTG 61.429 60.000 0.00 0.00 0.00 2.82
376 377 1.153449 TTCCGGCTCGCTACATTGG 60.153 57.895 0.00 0.00 0.00 3.16
377 378 2.587322 TTCCGGCTCGCTACATTGGG 62.587 60.000 0.00 0.00 0.00 4.12
378 379 3.272334 CGGCTCGCTACATTGGGC 61.272 66.667 0.00 0.00 0.00 5.36
383 384 2.791256 CGCTACATTGGGCGGTTG 59.209 61.111 15.21 0.00 46.42 3.77
384 385 2.760159 CGCTACATTGGGCGGTTGG 61.760 63.158 15.21 0.00 46.42 3.77
385 386 3.063743 GCTACATTGGGCGGTTGGC 62.064 63.158 0.00 0.00 42.51 4.52
386 387 2.748251 TACATTGGGCGGTTGGCG 60.748 61.111 0.00 0.00 44.92 5.69
387 388 3.554696 TACATTGGGCGGTTGGCGT 62.555 57.895 0.00 0.00 44.92 5.68
388 389 3.679738 CATTGGGCGGTTGGCGTT 61.680 61.111 0.00 0.00 44.92 4.84
389 390 3.370231 ATTGGGCGGTTGGCGTTC 61.370 61.111 0.00 0.00 44.92 3.95
402 403 4.675029 CGTTCGACCGGCCCAAGT 62.675 66.667 0.00 0.00 0.00 3.16
403 404 2.281276 GTTCGACCGGCCCAAGTT 60.281 61.111 0.00 0.00 0.00 2.66
404 405 2.281208 TTCGACCGGCCCAAGTTG 60.281 61.111 0.00 0.00 0.00 3.16
405 406 3.835790 TTCGACCGGCCCAAGTTGG 62.836 63.158 15.52 15.52 37.25 3.77
436 437 2.499205 CGCAGATCACCGCCCTTA 59.501 61.111 0.00 0.00 0.00 2.69
437 438 1.069765 CGCAGATCACCGCCCTTAT 59.930 57.895 0.00 0.00 0.00 1.73
438 439 1.224069 CGCAGATCACCGCCCTTATG 61.224 60.000 0.00 0.00 0.00 1.90
439 440 0.179045 GCAGATCACCGCCCTTATGT 60.179 55.000 0.00 0.00 0.00 2.29
440 441 1.747206 GCAGATCACCGCCCTTATGTT 60.747 52.381 0.00 0.00 0.00 2.71
441 442 2.484770 GCAGATCACCGCCCTTATGTTA 60.485 50.000 0.00 0.00 0.00 2.41
442 443 3.804036 CAGATCACCGCCCTTATGTTAA 58.196 45.455 0.00 0.00 0.00 2.01
443 444 3.809832 CAGATCACCGCCCTTATGTTAAG 59.190 47.826 0.00 0.00 0.00 1.85
444 445 3.454812 AGATCACCGCCCTTATGTTAAGT 59.545 43.478 0.00 0.00 0.00 2.24
445 446 3.706600 TCACCGCCCTTATGTTAAGTT 57.293 42.857 0.00 0.00 0.00 2.66
446 447 4.822685 TCACCGCCCTTATGTTAAGTTA 57.177 40.909 0.00 0.00 0.00 2.24
447 448 4.761975 TCACCGCCCTTATGTTAAGTTAG 58.238 43.478 0.00 0.00 0.00 2.34
448 449 4.467082 TCACCGCCCTTATGTTAAGTTAGA 59.533 41.667 0.00 0.00 0.00 2.10
449 450 5.129815 TCACCGCCCTTATGTTAAGTTAGAT 59.870 40.000 0.00 0.00 0.00 1.98
450 451 6.324512 TCACCGCCCTTATGTTAAGTTAGATA 59.675 38.462 0.00 0.00 0.00 1.98
451 452 7.015877 TCACCGCCCTTATGTTAAGTTAGATAT 59.984 37.037 0.00 0.00 0.00 1.63
452 453 7.660208 CACCGCCCTTATGTTAAGTTAGATATT 59.340 37.037 0.00 0.00 0.00 1.28
453 454 8.873144 ACCGCCCTTATGTTAAGTTAGATATTA 58.127 33.333 0.00 0.00 0.00 0.98
454 455 9.367444 CCGCCCTTATGTTAAGTTAGATATTAG 57.633 37.037 0.00 0.00 0.00 1.73
455 456 9.367444 CGCCCTTATGTTAAGTTAGATATTAGG 57.633 37.037 0.00 0.00 0.00 2.69
476 477 8.840200 TTAGGAGTTAGAGATGTGATAGGTTT 57.160 34.615 0.00 0.00 0.00 3.27
477 478 9.931698 TTAGGAGTTAGAGATGTGATAGGTTTA 57.068 33.333 0.00 0.00 0.00 2.01
478 479 8.840200 AGGAGTTAGAGATGTGATAGGTTTAA 57.160 34.615 0.00 0.00 0.00 1.52
479 480 9.268282 AGGAGTTAGAGATGTGATAGGTTTAAA 57.732 33.333 0.00 0.00 0.00 1.52
480 481 9.315525 GGAGTTAGAGATGTGATAGGTTTAAAC 57.684 37.037 9.98 9.98 0.00 2.01
497 498 7.448748 GTTTAAACCATGTATGACTTGTCCT 57.551 36.000 7.12 0.00 0.00 3.85
498 499 8.556213 GTTTAAACCATGTATGACTTGTCCTA 57.444 34.615 7.12 0.00 0.00 2.94
499 500 9.174166 GTTTAAACCATGTATGACTTGTCCTAT 57.826 33.333 7.12 0.00 0.00 2.57
501 502 9.826574 TTAAACCATGTATGACTTGTCCTATAC 57.173 33.333 0.00 2.20 0.00 1.47
502 503 7.676683 AACCATGTATGACTTGTCCTATACT 57.323 36.000 10.50 0.00 0.00 2.12
503 504 7.291411 ACCATGTATGACTTGTCCTATACTC 57.709 40.000 10.50 0.00 0.00 2.59
504 505 6.267928 ACCATGTATGACTTGTCCTATACTCC 59.732 42.308 10.50 0.00 0.00 3.85
505 506 6.267699 CCATGTATGACTTGTCCTATACTCCA 59.732 42.308 10.50 0.00 0.00 3.86
506 507 7.202001 CCATGTATGACTTGTCCTATACTCCAA 60.202 40.741 10.50 0.00 0.00 3.53
507 508 7.727578 TGTATGACTTGTCCTATACTCCAAA 57.272 36.000 10.50 0.00 0.00 3.28
508 509 8.319057 TGTATGACTTGTCCTATACTCCAAAT 57.681 34.615 10.50 0.00 0.00 2.32
509 510 8.421784 TGTATGACTTGTCCTATACTCCAAATC 58.578 37.037 10.50 0.00 0.00 2.17
510 511 7.682787 ATGACTTGTCCTATACTCCAAATCT 57.317 36.000 0.00 0.00 0.00 2.40
511 512 7.113658 TGACTTGTCCTATACTCCAAATCTC 57.886 40.000 0.00 0.00 0.00 2.75
512 513 6.897966 TGACTTGTCCTATACTCCAAATCTCT 59.102 38.462 0.00 0.00 0.00 3.10
513 514 7.400339 TGACTTGTCCTATACTCCAAATCTCTT 59.600 37.037 0.00 0.00 0.00 2.85
514 515 8.152023 ACTTGTCCTATACTCCAAATCTCTTT 57.848 34.615 0.00 0.00 0.00 2.52
515 516 8.261522 ACTTGTCCTATACTCCAAATCTCTTTC 58.738 37.037 0.00 0.00 0.00 2.62
516 517 7.125792 TGTCCTATACTCCAAATCTCTTTCC 57.874 40.000 0.00 0.00 0.00 3.13
517 518 6.099845 TGTCCTATACTCCAAATCTCTTTCCC 59.900 42.308 0.00 0.00 0.00 3.97
518 519 6.327887 GTCCTATACTCCAAATCTCTTTCCCT 59.672 42.308 0.00 0.00 0.00 4.20
519 520 6.555360 TCCTATACTCCAAATCTCTTTCCCTC 59.445 42.308 0.00 0.00 0.00 4.30
520 521 6.327626 CCTATACTCCAAATCTCTTTCCCTCA 59.672 42.308 0.00 0.00 0.00 3.86
521 522 6.838401 ATACTCCAAATCTCTTTCCCTCAT 57.162 37.500 0.00 0.00 0.00 2.90
522 523 7.937700 ATACTCCAAATCTCTTTCCCTCATA 57.062 36.000 0.00 0.00 0.00 2.15
523 524 6.838401 ACTCCAAATCTCTTTCCCTCATAT 57.162 37.500 0.00 0.00 0.00 1.78
524 525 7.218314 ACTCCAAATCTCTTTCCCTCATATT 57.782 36.000 0.00 0.00 0.00 1.28
525 526 8.337118 ACTCCAAATCTCTTTCCCTCATATTA 57.663 34.615 0.00 0.00 0.00 0.98
526 527 8.953665 ACTCCAAATCTCTTTCCCTCATATTAT 58.046 33.333 0.00 0.00 0.00 1.28
566 567 7.792032 CCTACAAGGGTCAGATTAATAGAACA 58.208 38.462 7.49 0.00 0.00 3.18
567 568 8.265055 CCTACAAGGGTCAGATTAATAGAACAA 58.735 37.037 7.49 0.00 0.00 2.83
568 569 7.923414 ACAAGGGTCAGATTAATAGAACAAC 57.077 36.000 7.49 0.00 0.00 3.32
569 570 7.458397 ACAAGGGTCAGATTAATAGAACAACA 58.542 34.615 7.49 0.00 0.00 3.33
570 571 8.109634 ACAAGGGTCAGATTAATAGAACAACAT 58.890 33.333 7.49 0.00 0.00 2.71
571 572 9.613428 CAAGGGTCAGATTAATAGAACAACATA 57.387 33.333 7.49 0.00 0.00 2.29
584 585 9.866655 AATAGAACAACATATTCACATACCCAT 57.133 29.630 0.00 0.00 0.00 4.00
585 586 9.866655 ATAGAACAACATATTCACATACCCATT 57.133 29.630 0.00 0.00 0.00 3.16
586 587 8.225603 AGAACAACATATTCACATACCCATTC 57.774 34.615 0.00 0.00 0.00 2.67
587 588 8.055181 AGAACAACATATTCACATACCCATTCT 58.945 33.333 0.00 0.00 0.00 2.40
588 589 9.337396 GAACAACATATTCACATACCCATTCTA 57.663 33.333 0.00 0.00 0.00 2.10
589 590 9.866655 AACAACATATTCACATACCCATTCTAT 57.133 29.630 0.00 0.00 0.00 1.98
597 598 7.684317 TCACATACCCATTCTATACTTTCCA 57.316 36.000 0.00 0.00 0.00 3.53
598 599 7.506114 TCACATACCCATTCTATACTTTCCAC 58.494 38.462 0.00 0.00 0.00 4.02
599 600 7.126573 TCACATACCCATTCTATACTTTCCACA 59.873 37.037 0.00 0.00 0.00 4.17
600 601 7.226720 CACATACCCATTCTATACTTTCCACAC 59.773 40.741 0.00 0.00 0.00 3.82
601 602 5.112129 ACCCATTCTATACTTTCCACACC 57.888 43.478 0.00 0.00 0.00 4.16
626 627 2.181521 GGTCAAACCGGCGAACACA 61.182 57.895 9.30 0.00 0.00 3.72
669 670 2.432628 CGTCTGGCTCACCGGTTC 60.433 66.667 2.97 0.00 43.58 3.62
672 673 2.358737 CTGGCTCACCGGTTCCAC 60.359 66.667 2.97 0.00 39.70 4.02
715 716 0.034896 AGCGTGAAACATTCCTCGGT 59.965 50.000 0.00 0.00 35.74 4.69
732 733 0.168788 GGTCATTGACATGGTGCACG 59.831 55.000 18.09 0.00 33.68 5.34
837 906 0.242286 CTATGCTGAGATACGCGGCT 59.758 55.000 12.47 4.27 36.54 5.52
963 1032 3.978666 CAAGAATTGCAGCTCCCAAGCA 61.979 50.000 0.00 0.00 45.53 3.91
964 1033 5.766897 CAAGAATTGCAGCTCCCAAGCAG 62.767 52.174 0.00 0.00 45.53 4.24
971 1040 3.915575 CTCCCAAGCAGCACCATC 58.084 61.111 0.00 0.00 0.00 3.51
972 1041 2.046023 TCCCAAGCAGCACCATCG 60.046 61.111 0.00 0.00 0.00 3.84
973 1042 3.818787 CCCAAGCAGCACCATCGC 61.819 66.667 0.00 0.00 0.00 4.58
1044 1113 2.695759 CGGCTCTGTCGCAGTCTCT 61.696 63.158 6.72 0.00 32.61 3.10
1250 1319 2.792599 GCTGTCGTCGTCGAGGAT 59.207 61.111 19.47 0.00 46.96 3.24
1997 2066 6.254804 TCAATGTACCTCGTTCATGAAATACG 59.745 38.462 10.35 10.93 36.67 3.06
2096 2166 7.765695 ACCAGTCAAATGAAAACTCACATAT 57.234 32.000 0.00 0.00 0.00 1.78
2161 2234 2.423185 AGCTGCACATAATAAAGCGCAA 59.577 40.909 11.47 0.00 38.90 4.85
2246 2320 6.313905 AGCAAAATACAAGAATAGAGTGGTCG 59.686 38.462 0.00 0.00 0.00 4.79
2270 2344 8.888716 TCGTGTAAATAGCAATCAAATGTACAT 58.111 29.630 1.41 1.41 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.606130 TCTGCAGCCGATGAAGCAAA 60.606 50.000 9.47 0.00 34.05 3.68
2 3 1.449070 CTCTGCAGCCGATGAAGCA 60.449 57.895 9.47 0.00 34.05 3.91
3 4 2.821688 GCTCTGCAGCCGATGAAGC 61.822 63.158 9.47 7.24 40.14 3.86
4 5 3.407657 GCTCTGCAGCCGATGAAG 58.592 61.111 9.47 0.00 40.14 3.02
13 14 3.119919 GGAAACATTTGAGAGCTCTGCAG 60.120 47.826 23.91 7.63 0.00 4.41
14 15 2.816087 GGAAACATTTGAGAGCTCTGCA 59.184 45.455 23.91 15.83 0.00 4.41
15 16 3.080319 AGGAAACATTTGAGAGCTCTGC 58.920 45.455 23.91 13.28 0.00 4.26
16 17 4.070716 ACAGGAAACATTTGAGAGCTCTG 58.929 43.478 23.91 9.88 0.00 3.35
17 18 4.202398 TGACAGGAAACATTTGAGAGCTCT 60.202 41.667 18.28 18.28 0.00 4.09
18 19 4.067896 TGACAGGAAACATTTGAGAGCTC 58.932 43.478 5.27 5.27 0.00 4.09
19 20 4.090761 TGACAGGAAACATTTGAGAGCT 57.909 40.909 0.00 0.00 0.00 4.09
20 21 5.382618 AATGACAGGAAACATTTGAGAGC 57.617 39.130 0.00 0.00 33.72 4.09
21 22 7.306983 GCAAAAATGACAGGAAACATTTGAGAG 60.307 37.037 0.00 0.00 43.07 3.20
22 23 6.479660 GCAAAAATGACAGGAAACATTTGAGA 59.520 34.615 0.00 0.00 43.07 3.27
23 24 6.480981 AGCAAAAATGACAGGAAACATTTGAG 59.519 34.615 0.00 0.00 43.07 3.02
24 25 6.347696 AGCAAAAATGACAGGAAACATTTGA 58.652 32.000 0.00 0.00 43.07 2.69
25 26 6.607735 AGCAAAAATGACAGGAAACATTTG 57.392 33.333 0.00 0.00 43.07 2.32
26 27 7.725251 TCTAGCAAAAATGACAGGAAACATTT 58.275 30.769 0.00 0.00 44.88 2.32
27 28 7.288810 TCTAGCAAAAATGACAGGAAACATT 57.711 32.000 0.00 0.00 38.18 2.71
28 29 6.899393 TCTAGCAAAAATGACAGGAAACAT 57.101 33.333 0.00 0.00 0.00 2.71
29 30 6.707440 TTCTAGCAAAAATGACAGGAAACA 57.293 33.333 0.00 0.00 0.00 2.83
30 31 5.631096 GCTTCTAGCAAAAATGACAGGAAAC 59.369 40.000 0.00 0.00 41.89 2.78
31 32 5.562696 CGCTTCTAGCAAAAATGACAGGAAA 60.563 40.000 0.00 0.00 42.58 3.13
32 33 4.083324 CGCTTCTAGCAAAAATGACAGGAA 60.083 41.667 0.00 0.00 42.58 3.36
33 34 3.436704 CGCTTCTAGCAAAAATGACAGGA 59.563 43.478 0.00 0.00 42.58 3.86
34 35 3.189287 ACGCTTCTAGCAAAAATGACAGG 59.811 43.478 0.00 0.00 42.58 4.00
35 36 4.410492 ACGCTTCTAGCAAAAATGACAG 57.590 40.909 0.00 0.00 42.58 3.51
36 37 4.036262 ACAACGCTTCTAGCAAAAATGACA 59.964 37.500 0.00 0.00 42.58 3.58
37 38 4.537015 ACAACGCTTCTAGCAAAAATGAC 58.463 39.130 0.00 0.00 42.58 3.06
38 39 4.829064 ACAACGCTTCTAGCAAAAATGA 57.171 36.364 0.00 0.00 42.58 2.57
39 40 4.087085 CGAACAACGCTTCTAGCAAAAATG 59.913 41.667 0.00 0.00 42.58 2.32
40 41 4.024387 TCGAACAACGCTTCTAGCAAAAAT 60.024 37.500 0.00 0.00 42.58 1.82
41 42 3.310227 TCGAACAACGCTTCTAGCAAAAA 59.690 39.130 0.00 0.00 42.58 1.94
42 43 2.867368 TCGAACAACGCTTCTAGCAAAA 59.133 40.909 0.00 0.00 42.58 2.44
43 44 2.475818 TCGAACAACGCTTCTAGCAAA 58.524 42.857 0.00 0.00 42.58 3.68
44 45 2.143008 TCGAACAACGCTTCTAGCAA 57.857 45.000 0.00 0.00 42.58 3.91
45 46 2.363788 ATCGAACAACGCTTCTAGCA 57.636 45.000 0.00 0.00 42.58 3.49
46 47 3.724295 AAATCGAACAACGCTTCTAGC 57.276 42.857 0.00 0.00 42.26 3.42
47 48 3.840763 GCAAAATCGAACAACGCTTCTAG 59.159 43.478 0.00 0.00 42.26 2.43
48 49 3.496884 AGCAAAATCGAACAACGCTTCTA 59.503 39.130 0.00 0.00 42.26 2.10
49 50 2.290641 AGCAAAATCGAACAACGCTTCT 59.709 40.909 0.00 0.00 42.26 2.85
50 51 2.401720 CAGCAAAATCGAACAACGCTTC 59.598 45.455 0.00 0.00 42.26 3.86
51 52 2.384382 CAGCAAAATCGAACAACGCTT 58.616 42.857 0.00 0.00 42.26 4.68
52 53 1.334960 CCAGCAAAATCGAACAACGCT 60.335 47.619 0.00 0.00 42.26 5.07
53 54 1.052287 CCAGCAAAATCGAACAACGC 58.948 50.000 0.00 0.00 42.26 4.84
54 55 2.679355 TCCAGCAAAATCGAACAACG 57.321 45.000 0.00 0.00 44.09 4.10
55 56 2.726241 GCTTCCAGCAAAATCGAACAAC 59.274 45.455 0.00 0.00 41.89 3.32
56 57 2.604373 CGCTTCCAGCAAAATCGAACAA 60.604 45.455 0.00 0.00 42.58 2.83
57 58 1.069296 CGCTTCCAGCAAAATCGAACA 60.069 47.619 0.00 0.00 42.58 3.18
58 59 1.069227 ACGCTTCCAGCAAAATCGAAC 60.069 47.619 0.00 0.00 42.58 3.95
59 60 1.234821 ACGCTTCCAGCAAAATCGAA 58.765 45.000 0.00 0.00 42.58 3.71
60 61 1.069296 CAACGCTTCCAGCAAAATCGA 60.069 47.619 0.00 0.00 42.58 3.59
61 62 1.330306 CAACGCTTCCAGCAAAATCG 58.670 50.000 0.00 0.00 42.58 3.34
62 63 2.422276 ACAACGCTTCCAGCAAAATC 57.578 45.000 0.00 0.00 42.58 2.17
63 64 2.742774 GAACAACGCTTCCAGCAAAAT 58.257 42.857 0.00 0.00 42.58 1.82
64 65 1.532921 CGAACAACGCTTCCAGCAAAA 60.533 47.619 0.00 0.00 42.58 2.44
65 66 0.028770 CGAACAACGCTTCCAGCAAA 59.971 50.000 0.00 0.00 42.58 3.68
66 67 1.092921 ACGAACAACGCTTCCAGCAA 61.093 50.000 0.00 0.00 42.58 3.91
67 68 1.092921 AACGAACAACGCTTCCAGCA 61.093 50.000 0.00 0.00 42.58 4.41
68 69 0.028902 AAACGAACAACGCTTCCAGC 59.971 50.000 0.00 0.00 46.94 4.85
69 70 2.468532 AAAACGAACAACGCTTCCAG 57.531 45.000 0.00 0.00 46.94 3.86
70 71 2.520979 CAAAAACGAACAACGCTTCCA 58.479 42.857 0.00 0.00 46.94 3.53
71 72 1.254313 GCAAAAACGAACAACGCTTCC 59.746 47.619 0.00 0.00 46.94 3.46
72 73 2.182014 AGCAAAAACGAACAACGCTTC 58.818 42.857 0.00 0.00 46.94 3.86
73 74 2.271821 AGCAAAAACGAACAACGCTT 57.728 40.000 0.00 0.00 46.94 4.68
74 75 2.182014 GAAGCAAAAACGAACAACGCT 58.818 42.857 0.00 0.00 46.94 5.07
75 76 1.914700 TGAAGCAAAAACGAACAACGC 59.085 42.857 0.00 0.00 46.94 4.84
77 78 3.241520 CGGTTGAAGCAAAAACGAACAAC 60.242 43.478 0.00 0.00 36.47 3.32
78 79 2.917971 CGGTTGAAGCAAAAACGAACAA 59.082 40.909 0.00 0.00 0.00 2.83
79 80 2.161808 TCGGTTGAAGCAAAAACGAACA 59.838 40.909 4.02 0.00 0.00 3.18
80 81 2.528688 GTCGGTTGAAGCAAAAACGAAC 59.471 45.455 7.60 0.82 31.84 3.95
81 82 2.478200 GGTCGGTTGAAGCAAAAACGAA 60.478 45.455 7.60 0.00 31.84 3.85
82 83 1.064357 GGTCGGTTGAAGCAAAAACGA 59.936 47.619 2.53 2.53 0.00 3.85
83 84 1.202200 TGGTCGGTTGAAGCAAAAACG 60.202 47.619 0.00 0.00 0.00 3.60
84 85 2.190161 GTGGTCGGTTGAAGCAAAAAC 58.810 47.619 0.00 0.00 0.00 2.43
85 86 1.135333 GGTGGTCGGTTGAAGCAAAAA 59.865 47.619 0.00 0.00 0.00 1.94
86 87 0.741915 GGTGGTCGGTTGAAGCAAAA 59.258 50.000 0.00 0.00 0.00 2.44
87 88 1.440938 CGGTGGTCGGTTGAAGCAAA 61.441 55.000 0.00 0.00 34.75 3.68
88 89 1.890041 CGGTGGTCGGTTGAAGCAA 60.890 57.895 0.00 0.00 34.75 3.91
89 90 2.280524 CGGTGGTCGGTTGAAGCA 60.281 61.111 0.00 0.00 34.75 3.91
98 99 0.170561 CTACAGAACTCCGGTGGTCG 59.829 60.000 15.51 12.66 38.88 4.79
99 100 0.531200 CCTACAGAACTCCGGTGGTC 59.469 60.000 13.76 13.76 0.00 4.02
100 101 0.178941 ACCTACAGAACTCCGGTGGT 60.179 55.000 8.63 0.00 0.00 4.16
101 102 1.475682 GTACCTACAGAACTCCGGTGG 59.524 57.143 8.63 2.00 0.00 4.61
102 103 1.131883 CGTACCTACAGAACTCCGGTG 59.868 57.143 0.00 0.00 0.00 4.94
103 104 1.003580 TCGTACCTACAGAACTCCGGT 59.996 52.381 0.00 0.00 0.00 5.28
104 105 1.742761 TCGTACCTACAGAACTCCGG 58.257 55.000 0.00 0.00 0.00 5.14
105 106 2.541178 GCATCGTACCTACAGAACTCCG 60.541 54.545 0.00 0.00 0.00 4.63
106 107 2.426024 TGCATCGTACCTACAGAACTCC 59.574 50.000 0.00 0.00 0.00 3.85
107 108 3.777465 TGCATCGTACCTACAGAACTC 57.223 47.619 0.00 0.00 0.00 3.01
108 109 3.447586 ACATGCATCGTACCTACAGAACT 59.552 43.478 0.00 0.00 0.00 3.01
109 110 3.782046 ACATGCATCGTACCTACAGAAC 58.218 45.455 0.00 0.00 0.00 3.01
110 111 3.488553 CGACATGCATCGTACCTACAGAA 60.489 47.826 0.00 0.00 37.33 3.02
111 112 2.032924 CGACATGCATCGTACCTACAGA 59.967 50.000 0.00 0.00 37.33 3.41
112 113 2.032924 TCGACATGCATCGTACCTACAG 59.967 50.000 9.37 0.00 42.80 2.74
113 114 2.018515 TCGACATGCATCGTACCTACA 58.981 47.619 9.37 0.00 42.80 2.74
114 115 2.768833 TCGACATGCATCGTACCTAC 57.231 50.000 9.37 0.00 42.80 3.18
115 116 2.030274 CCATCGACATGCATCGTACCTA 60.030 50.000 9.37 0.00 42.80 3.08
116 117 1.269778 CCATCGACATGCATCGTACCT 60.270 52.381 9.37 0.00 42.80 3.08
117 118 1.139989 CCATCGACATGCATCGTACC 58.860 55.000 9.37 0.00 42.80 3.34
118 119 2.054363 CTCCATCGACATGCATCGTAC 58.946 52.381 9.37 0.00 42.80 3.67
119 120 1.000274 CCTCCATCGACATGCATCGTA 60.000 52.381 9.37 0.00 42.80 3.43
120 121 0.249615 CCTCCATCGACATGCATCGT 60.250 55.000 9.37 5.64 42.80 3.73
121 122 1.563435 GCCTCCATCGACATGCATCG 61.563 60.000 0.00 0.00 43.63 3.84
122 123 1.233285 GGCCTCCATCGACATGCATC 61.233 60.000 0.00 0.00 0.00 3.91
123 124 1.228063 GGCCTCCATCGACATGCAT 60.228 57.895 0.00 0.00 0.00 3.96
124 125 2.190313 GGCCTCCATCGACATGCA 59.810 61.111 0.00 0.00 0.00 3.96
125 126 1.890979 CTGGCCTCCATCGACATGC 60.891 63.158 3.32 0.00 30.82 4.06
126 127 1.890979 GCTGGCCTCCATCGACATG 60.891 63.158 3.32 0.00 30.82 3.21
127 128 2.321263 CTGCTGGCCTCCATCGACAT 62.321 60.000 3.32 0.00 30.82 3.06
128 129 3.002583 TGCTGGCCTCCATCGACA 61.003 61.111 3.32 0.00 30.82 4.35
129 130 2.202987 CTGCTGGCCTCCATCGAC 60.203 66.667 3.32 0.00 30.82 4.20
130 131 2.364186 TCTGCTGGCCTCCATCGA 60.364 61.111 3.32 0.00 30.82 3.59
131 132 2.108566 CTCTGCTGGCCTCCATCG 59.891 66.667 3.32 0.00 30.82 3.84
132 133 1.145819 GTCTCTGCTGGCCTCCATC 59.854 63.158 3.32 0.00 30.82 3.51
133 134 2.729479 CGTCTCTGCTGGCCTCCAT 61.729 63.158 3.32 0.00 30.82 3.41
134 135 3.385384 CGTCTCTGCTGGCCTCCA 61.385 66.667 3.32 0.00 0.00 3.86
135 136 4.154347 CCGTCTCTGCTGGCCTCC 62.154 72.222 3.32 0.00 0.00 4.30
136 137 4.828925 GCCGTCTCTGCTGGCCTC 62.829 72.222 3.32 0.00 43.06 4.70
166 167 4.176851 GTCCCCGTCGTCGAGCTC 62.177 72.222 2.73 2.73 39.71 4.09
168 169 3.562779 TTTGTCCCCGTCGTCGAGC 62.563 63.158 2.98 0.00 39.71 5.03
169 170 1.007038 TTTTGTCCCCGTCGTCGAG 60.007 57.895 2.98 0.00 39.71 4.04
170 171 1.007038 CTTTTGTCCCCGTCGTCGA 60.007 57.895 2.98 0.00 39.71 4.20
171 172 2.025418 CCTTTTGTCCCCGTCGTCG 61.025 63.158 0.00 0.00 0.00 5.12
172 173 1.670083 CCCTTTTGTCCCCGTCGTC 60.670 63.158 0.00 0.00 0.00 4.20
173 174 2.428622 CCCTTTTGTCCCCGTCGT 59.571 61.111 0.00 0.00 0.00 4.34
174 175 2.359478 CCCCTTTTGTCCCCGTCG 60.359 66.667 0.00 0.00 0.00 5.12
175 176 2.035155 CCCCCTTTTGTCCCCGTC 59.965 66.667 0.00 0.00 0.00 4.79
176 177 2.779598 ACCCCCTTTTGTCCCCGT 60.780 61.111 0.00 0.00 0.00 5.28
177 178 2.282887 CACCCCCTTTTGTCCCCG 60.283 66.667 0.00 0.00 0.00 5.73
178 179 2.119611 CCACCCCCTTTTGTCCCC 59.880 66.667 0.00 0.00 0.00 4.81
179 180 2.119611 CCCACCCCCTTTTGTCCC 59.880 66.667 0.00 0.00 0.00 4.46
180 181 2.119611 CCCCACCCCCTTTTGTCC 59.880 66.667 0.00 0.00 0.00 4.02
181 182 2.119611 CCCCCACCCCCTTTTGTC 59.880 66.667 0.00 0.00 0.00 3.18
182 183 2.371811 TCCCCCACCCCCTTTTGT 60.372 61.111 0.00 0.00 0.00 2.83
183 184 2.119611 GTCCCCCACCCCCTTTTG 59.880 66.667 0.00 0.00 0.00 2.44
184 185 3.197895 GGTCCCCCACCCCCTTTT 61.198 66.667 0.00 0.00 39.69 2.27
185 186 4.560492 TGGTCCCCCACCCCCTTT 62.560 66.667 0.00 0.00 46.18 3.11
192 193 4.394712 CAGCGTCTGGTCCCCCAC 62.395 72.222 0.00 0.00 35.17 4.61
195 196 4.329545 TTGCAGCGTCTGGTCCCC 62.330 66.667 8.57 0.00 31.21 4.81
196 197 3.050275 GTTGCAGCGTCTGGTCCC 61.050 66.667 8.57 0.00 31.21 4.46
197 198 3.050275 GGTTGCAGCGTCTGGTCC 61.050 66.667 8.57 0.00 31.21 4.46
198 199 3.414700 CGGTTGCAGCGTCTGGTC 61.415 66.667 8.57 0.00 33.95 4.02
254 255 3.521308 CTTCCACCGTTGTGCGTGC 62.521 63.158 0.00 0.00 41.35 5.34
255 256 2.631428 CTTCCACCGTTGTGCGTG 59.369 61.111 0.00 0.00 41.35 5.34
256 257 2.590575 CCTTCCACCGTTGTGCGT 60.591 61.111 0.00 0.00 41.35 5.24
257 258 2.280524 TCCTTCCACCGTTGTGCG 60.281 61.111 0.00 0.00 41.35 5.34
258 259 1.966451 CCTCCTTCCACCGTTGTGC 60.966 63.158 0.00 0.00 41.35 4.57
259 260 0.324943 ATCCTCCTTCCACCGTTGTG 59.675 55.000 0.00 0.00 42.39 3.33
260 261 1.064825 AATCCTCCTTCCACCGTTGT 58.935 50.000 0.00 0.00 0.00 3.32
261 262 1.453155 CAATCCTCCTTCCACCGTTG 58.547 55.000 0.00 0.00 0.00 4.10
262 263 0.328258 CCAATCCTCCTTCCACCGTT 59.672 55.000 0.00 0.00 0.00 4.44
263 264 1.991230 CCAATCCTCCTTCCACCGT 59.009 57.895 0.00 0.00 0.00 4.83
264 265 1.452108 GCCAATCCTCCTTCCACCG 60.452 63.158 0.00 0.00 0.00 4.94
265 266 0.394899 CAGCCAATCCTCCTTCCACC 60.395 60.000 0.00 0.00 0.00 4.61
266 267 0.394899 CCAGCCAATCCTCCTTCCAC 60.395 60.000 0.00 0.00 0.00 4.02
267 268 1.574526 CCCAGCCAATCCTCCTTCCA 61.575 60.000 0.00 0.00 0.00 3.53
268 269 1.228510 CCCAGCCAATCCTCCTTCC 59.771 63.158 0.00 0.00 0.00 3.46
269 270 0.394899 CACCCAGCCAATCCTCCTTC 60.395 60.000 0.00 0.00 0.00 3.46
270 271 1.693640 CACCCAGCCAATCCTCCTT 59.306 57.895 0.00 0.00 0.00 3.36
271 272 2.311854 CCACCCAGCCAATCCTCCT 61.312 63.158 0.00 0.00 0.00 3.69
272 273 2.276740 CCACCCAGCCAATCCTCC 59.723 66.667 0.00 0.00 0.00 4.30
273 274 2.276740 CCCACCCAGCCAATCCTC 59.723 66.667 0.00 0.00 0.00 3.71
274 275 3.350163 CCCCACCCAGCCAATCCT 61.350 66.667 0.00 0.00 0.00 3.24
275 276 4.463788 CCCCCACCCAGCCAATCC 62.464 72.222 0.00 0.00 0.00 3.01
282 283 2.523168 AAAAACGCCCCCACCCAG 60.523 61.111 0.00 0.00 0.00 4.45
296 297 3.283751 TCGGTCAAAGCTTCCAGAAAAA 58.716 40.909 0.00 0.00 0.00 1.94
297 298 2.925724 TCGGTCAAAGCTTCCAGAAAA 58.074 42.857 0.00 0.00 0.00 2.29
298 299 2.631160 TCGGTCAAAGCTTCCAGAAA 57.369 45.000 0.00 0.00 0.00 2.52
299 300 2.494059 CTTCGGTCAAAGCTTCCAGAA 58.506 47.619 0.00 4.87 0.00 3.02
300 301 1.270839 CCTTCGGTCAAAGCTTCCAGA 60.271 52.381 0.00 0.00 0.00 3.86
301 302 1.160137 CCTTCGGTCAAAGCTTCCAG 58.840 55.000 0.00 0.00 0.00 3.86
302 303 0.762418 TCCTTCGGTCAAAGCTTCCA 59.238 50.000 0.00 0.00 0.00 3.53
303 304 1.807142 CTTCCTTCGGTCAAAGCTTCC 59.193 52.381 0.00 0.00 0.00 3.46
304 305 2.767505 TCTTCCTTCGGTCAAAGCTTC 58.232 47.619 0.00 0.00 0.00 3.86
305 306 2.879026 GTTCTTCCTTCGGTCAAAGCTT 59.121 45.455 0.00 0.00 0.00 3.74
306 307 2.495084 GTTCTTCCTTCGGTCAAAGCT 58.505 47.619 0.00 0.00 0.00 3.74
307 308 1.194772 CGTTCTTCCTTCGGTCAAAGC 59.805 52.381 0.00 0.00 0.00 3.51
308 309 2.731976 CTCGTTCTTCCTTCGGTCAAAG 59.268 50.000 0.00 0.00 0.00 2.77
309 310 2.101917 ACTCGTTCTTCCTTCGGTCAAA 59.898 45.455 0.00 0.00 0.00 2.69
310 311 1.684983 ACTCGTTCTTCCTTCGGTCAA 59.315 47.619 0.00 0.00 0.00 3.18
311 312 1.268899 GACTCGTTCTTCCTTCGGTCA 59.731 52.381 0.00 0.00 0.00 4.02
312 313 1.728502 CGACTCGTTCTTCCTTCGGTC 60.729 57.143 0.00 0.00 0.00 4.79
313 314 0.240411 CGACTCGTTCTTCCTTCGGT 59.760 55.000 0.00 0.00 0.00 4.69
314 315 0.520404 TCGACTCGTTCTTCCTTCGG 59.480 55.000 0.00 0.00 0.00 4.30
315 316 1.466024 CCTCGACTCGTTCTTCCTTCG 60.466 57.143 0.00 0.00 0.00 3.79
316 317 1.135344 CCCTCGACTCGTTCTTCCTTC 60.135 57.143 0.00 0.00 0.00 3.46
317 318 0.889306 CCCTCGACTCGTTCTTCCTT 59.111 55.000 0.00 0.00 0.00 3.36
318 319 0.251253 ACCCTCGACTCGTTCTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
319 320 1.401199 CTACCCTCGACTCGTTCTTCC 59.599 57.143 0.00 0.00 0.00 3.46
320 321 2.352342 CTCTACCCTCGACTCGTTCTTC 59.648 54.545 0.00 0.00 0.00 2.87
321 322 2.290197 ACTCTACCCTCGACTCGTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
322 323 1.278699 ACTCTACCCTCGACTCGTTCT 59.721 52.381 0.00 0.00 0.00 3.01
323 324 1.736612 ACTCTACCCTCGACTCGTTC 58.263 55.000 0.00 0.00 0.00 3.95
324 325 1.811359 CAACTCTACCCTCGACTCGTT 59.189 52.381 0.00 0.00 0.00 3.85
325 326 1.451067 CAACTCTACCCTCGACTCGT 58.549 55.000 0.00 0.00 0.00 4.18
326 327 0.099082 GCAACTCTACCCTCGACTCG 59.901 60.000 0.00 0.00 0.00 4.18
327 328 0.456628 GGCAACTCTACCCTCGACTC 59.543 60.000 0.00 0.00 0.00 3.36
328 329 0.251653 TGGCAACTCTACCCTCGACT 60.252 55.000 0.00 0.00 37.61 4.18
329 330 0.173708 CTGGCAACTCTACCCTCGAC 59.826 60.000 0.00 0.00 37.61 4.20
330 331 0.039180 TCTGGCAACTCTACCCTCGA 59.961 55.000 0.00 0.00 37.61 4.04
331 332 1.067821 GATCTGGCAACTCTACCCTCG 59.932 57.143 0.00 0.00 37.61 4.63
332 333 1.067821 CGATCTGGCAACTCTACCCTC 59.932 57.143 0.00 0.00 37.61 4.30
333 334 1.115467 CGATCTGGCAACTCTACCCT 58.885 55.000 0.00 0.00 37.61 4.34
334 335 0.105039 CCGATCTGGCAACTCTACCC 59.895 60.000 0.00 0.00 37.61 3.69
335 336 1.112113 TCCGATCTGGCAACTCTACC 58.888 55.000 0.00 0.00 37.80 3.18
336 337 1.534175 CGTCCGATCTGGCAACTCTAC 60.534 57.143 0.00 0.00 37.80 2.59
337 338 0.738975 CGTCCGATCTGGCAACTCTA 59.261 55.000 0.00 0.00 37.80 2.43
338 339 1.513158 CGTCCGATCTGGCAACTCT 59.487 57.895 0.00 0.00 37.80 3.24
339 340 1.519455 CCGTCCGATCTGGCAACTC 60.519 63.158 0.00 0.00 37.80 3.01
340 341 1.827399 AACCGTCCGATCTGGCAACT 61.827 55.000 0.00 0.00 37.80 3.16
341 342 1.359459 GAACCGTCCGATCTGGCAAC 61.359 60.000 0.00 0.00 37.80 4.17
342 343 1.079405 GAACCGTCCGATCTGGCAA 60.079 57.895 0.00 0.00 37.80 4.52
343 344 2.577059 GAACCGTCCGATCTGGCA 59.423 61.111 0.00 0.00 37.80 4.92
344 345 2.202892 GGAACCGTCCGATCTGGC 60.203 66.667 0.00 0.00 37.80 4.85
353 354 3.818787 TAGCGAGCCGGAACCGTC 61.819 66.667 5.05 0.00 37.81 4.79
354 355 4.125695 GTAGCGAGCCGGAACCGT 62.126 66.667 5.05 0.00 37.81 4.83
355 356 2.901051 AATGTAGCGAGCCGGAACCG 62.901 60.000 5.05 5.83 39.44 4.44
356 357 1.153429 AATGTAGCGAGCCGGAACC 60.153 57.895 5.05 0.00 0.00 3.62
357 358 1.429148 CCAATGTAGCGAGCCGGAAC 61.429 60.000 5.05 0.00 0.00 3.62
358 359 1.153449 CCAATGTAGCGAGCCGGAA 60.153 57.895 5.05 0.00 0.00 4.30
359 360 2.499205 CCAATGTAGCGAGCCGGA 59.501 61.111 5.05 0.00 0.00 5.14
360 361 2.588877 CCCAATGTAGCGAGCCGG 60.589 66.667 0.00 0.00 0.00 6.13
361 362 3.272334 GCCCAATGTAGCGAGCCG 61.272 66.667 0.00 0.00 0.00 5.52
367 368 3.063743 GCCAACCGCCCAATGTAGC 62.064 63.158 0.00 0.00 0.00 3.58
368 369 2.760159 CGCCAACCGCCCAATGTAG 61.760 63.158 0.00 0.00 0.00 2.74
369 370 2.748251 CGCCAACCGCCCAATGTA 60.748 61.111 0.00 0.00 0.00 2.29
370 371 4.966787 ACGCCAACCGCCCAATGT 62.967 61.111 0.00 0.00 41.76 2.71
371 372 3.625082 GAACGCCAACCGCCCAATG 62.625 63.158 0.00 0.00 41.76 2.82
372 373 3.370231 GAACGCCAACCGCCCAAT 61.370 61.111 0.00 0.00 41.76 3.16
385 386 4.675029 ACTTGGGCCGGTCGAACG 62.675 66.667 17.78 17.78 0.00 3.95
386 387 2.281276 AACTTGGGCCGGTCGAAC 60.281 61.111 0.00 0.00 0.00 3.95
387 388 2.281208 CAACTTGGGCCGGTCGAA 60.281 61.111 2.71 2.71 0.00 3.71
388 389 4.323477 CCAACTTGGGCCGGTCGA 62.323 66.667 1.90 0.00 32.67 4.20
419 420 1.069765 ATAAGGGCGGTGATCTGCG 59.930 57.895 0.00 0.00 46.03 5.18
420 421 0.179045 ACATAAGGGCGGTGATCTGC 60.179 55.000 0.00 0.00 44.51 4.26
421 422 2.332063 AACATAAGGGCGGTGATCTG 57.668 50.000 0.00 0.00 0.00 2.90
422 423 3.454812 ACTTAACATAAGGGCGGTGATCT 59.545 43.478 0.00 0.00 0.00 2.75
423 424 3.805207 ACTTAACATAAGGGCGGTGATC 58.195 45.455 2.53 0.00 0.00 2.92
424 425 3.926058 ACTTAACATAAGGGCGGTGAT 57.074 42.857 2.53 0.00 0.00 3.06
425 426 3.706600 AACTTAACATAAGGGCGGTGA 57.293 42.857 2.53 0.00 0.00 4.02
426 427 4.761975 TCTAACTTAACATAAGGGCGGTG 58.238 43.478 2.53 0.00 0.00 4.94
427 428 5.625568 ATCTAACTTAACATAAGGGCGGT 57.374 39.130 2.53 0.00 0.00 5.68
428 429 9.367444 CTAATATCTAACTTAACATAAGGGCGG 57.633 37.037 2.53 0.00 0.00 6.13
429 430 9.367444 CCTAATATCTAACTTAACATAAGGGCG 57.633 37.037 2.53 0.00 0.00 6.13
450 451 9.440761 AAACCTATCACATCTCTAACTCCTAAT 57.559 33.333 0.00 0.00 0.00 1.73
451 452 8.840200 AAACCTATCACATCTCTAACTCCTAA 57.160 34.615 0.00 0.00 0.00 2.69
452 453 9.931698 TTAAACCTATCACATCTCTAACTCCTA 57.068 33.333 0.00 0.00 0.00 2.94
453 454 8.840200 TTAAACCTATCACATCTCTAACTCCT 57.160 34.615 0.00 0.00 0.00 3.69
454 455 9.315525 GTTTAAACCTATCACATCTCTAACTCC 57.684 37.037 7.12 0.00 0.00 3.85
455 456 9.315525 GGTTTAAACCTATCACATCTCTAACTC 57.684 37.037 26.98 0.00 45.75 3.01
473 474 7.448748 AGGACAAGTCATACATGGTTTAAAC 57.551 36.000 9.98 9.98 0.00 2.01
475 476 9.826574 GTATAGGACAAGTCATACATGGTTTAA 57.173 33.333 0.00 0.00 0.00 1.52
476 477 9.209048 AGTATAGGACAAGTCATACATGGTTTA 57.791 33.333 0.00 0.00 0.00 2.01
477 478 8.090788 AGTATAGGACAAGTCATACATGGTTT 57.909 34.615 0.00 0.00 0.00 3.27
478 479 7.202011 GGAGTATAGGACAAGTCATACATGGTT 60.202 40.741 0.00 0.00 0.00 3.67
479 480 6.267928 GGAGTATAGGACAAGTCATACATGGT 59.732 42.308 0.00 0.00 0.00 3.55
480 481 6.267699 TGGAGTATAGGACAAGTCATACATGG 59.732 42.308 0.00 0.00 0.00 3.66
481 482 7.290110 TGGAGTATAGGACAAGTCATACATG 57.710 40.000 11.12 0.00 0.00 3.21
482 483 7.914427 TTGGAGTATAGGACAAGTCATACAT 57.086 36.000 11.12 0.00 0.00 2.29
483 484 7.727578 TTTGGAGTATAGGACAAGTCATACA 57.272 36.000 11.12 0.00 0.00 2.29
484 485 8.643324 AGATTTGGAGTATAGGACAAGTCATAC 58.357 37.037 2.29 3.12 33.62 2.39
485 486 8.783660 AGATTTGGAGTATAGGACAAGTCATA 57.216 34.615 2.29 0.00 33.62 2.15
486 487 7.566879 AGAGATTTGGAGTATAGGACAAGTCAT 59.433 37.037 2.29 0.00 33.62 3.06
487 488 6.897966 AGAGATTTGGAGTATAGGACAAGTCA 59.102 38.462 2.29 0.00 33.62 3.41
488 489 7.354751 AGAGATTTGGAGTATAGGACAAGTC 57.645 40.000 0.00 0.00 32.01 3.01
489 490 7.741554 AAGAGATTTGGAGTATAGGACAAGT 57.258 36.000 0.00 0.00 0.00 3.16
490 491 7.713073 GGAAAGAGATTTGGAGTATAGGACAAG 59.287 40.741 0.00 0.00 0.00 3.16
491 492 7.365652 GGGAAAGAGATTTGGAGTATAGGACAA 60.366 40.741 0.00 0.00 0.00 3.18
492 493 6.099845 GGGAAAGAGATTTGGAGTATAGGACA 59.900 42.308 0.00 0.00 0.00 4.02
493 494 6.327887 AGGGAAAGAGATTTGGAGTATAGGAC 59.672 42.308 0.00 0.00 0.00 3.85
494 495 6.453476 AGGGAAAGAGATTTGGAGTATAGGA 58.547 40.000 0.00 0.00 0.00 2.94
495 496 6.327626 TGAGGGAAAGAGATTTGGAGTATAGG 59.672 42.308 0.00 0.00 0.00 2.57
496 497 7.366847 TGAGGGAAAGAGATTTGGAGTATAG 57.633 40.000 0.00 0.00 0.00 1.31
497 498 7.937700 ATGAGGGAAAGAGATTTGGAGTATA 57.062 36.000 0.00 0.00 0.00 1.47
498 499 6.838401 ATGAGGGAAAGAGATTTGGAGTAT 57.162 37.500 0.00 0.00 0.00 2.12
499 500 7.937700 ATATGAGGGAAAGAGATTTGGAGTA 57.062 36.000 0.00 0.00 0.00 2.59
500 501 6.838401 ATATGAGGGAAAGAGATTTGGAGT 57.162 37.500 0.00 0.00 0.00 3.85
541 542 7.792032 TGTTCTATTAATCTGACCCTTGTAGG 58.208 38.462 0.00 0.00 34.30 3.18
542 543 9.099454 GTTGTTCTATTAATCTGACCCTTGTAG 57.901 37.037 0.00 0.00 0.00 2.74
543 544 8.598916 TGTTGTTCTATTAATCTGACCCTTGTA 58.401 33.333 0.00 0.00 0.00 2.41
544 545 7.458397 TGTTGTTCTATTAATCTGACCCTTGT 58.542 34.615 0.00 0.00 0.00 3.16
545 546 7.921786 TGTTGTTCTATTAATCTGACCCTTG 57.078 36.000 0.00 0.00 0.00 3.61
558 559 9.866655 ATGGGTATGTGAATATGTTGTTCTATT 57.133 29.630 0.00 0.00 0.00 1.73
559 560 9.866655 AATGGGTATGTGAATATGTTGTTCTAT 57.133 29.630 0.00 0.00 0.00 1.98
560 561 9.337396 GAATGGGTATGTGAATATGTTGTTCTA 57.663 33.333 0.00 0.00 0.00 2.10
561 562 8.055181 AGAATGGGTATGTGAATATGTTGTTCT 58.945 33.333 0.00 0.00 0.00 3.01
562 563 8.225603 AGAATGGGTATGTGAATATGTTGTTC 57.774 34.615 0.00 0.00 0.00 3.18
563 564 9.866655 ATAGAATGGGTATGTGAATATGTTGTT 57.133 29.630 0.00 0.00 0.00 2.83
571 572 8.723365 TGGAAAGTATAGAATGGGTATGTGAAT 58.277 33.333 0.00 0.00 0.00 2.57
572 573 7.990886 GTGGAAAGTATAGAATGGGTATGTGAA 59.009 37.037 0.00 0.00 0.00 3.18
573 574 7.126573 TGTGGAAAGTATAGAATGGGTATGTGA 59.873 37.037 0.00 0.00 0.00 3.58
574 575 7.226720 GTGTGGAAAGTATAGAATGGGTATGTG 59.773 40.741 0.00 0.00 0.00 3.21
575 576 7.280356 GTGTGGAAAGTATAGAATGGGTATGT 58.720 38.462 0.00 0.00 0.00 2.29
576 577 6.710744 GGTGTGGAAAGTATAGAATGGGTATG 59.289 42.308 0.00 0.00 0.00 2.39
577 578 6.463897 CGGTGTGGAAAGTATAGAATGGGTAT 60.464 42.308 0.00 0.00 0.00 2.73
578 579 5.163385 CGGTGTGGAAAGTATAGAATGGGTA 60.163 44.000 0.00 0.00 0.00 3.69
579 580 4.383770 CGGTGTGGAAAGTATAGAATGGGT 60.384 45.833 0.00 0.00 0.00 4.51
580 581 4.127171 CGGTGTGGAAAGTATAGAATGGG 58.873 47.826 0.00 0.00 0.00 4.00
581 582 4.809426 GTCGGTGTGGAAAGTATAGAATGG 59.191 45.833 0.00 0.00 0.00 3.16
582 583 4.503007 CGTCGGTGTGGAAAGTATAGAATG 59.497 45.833 0.00 0.00 0.00 2.67
583 584 4.400251 TCGTCGGTGTGGAAAGTATAGAAT 59.600 41.667 0.00 0.00 0.00 2.40
584 585 3.758023 TCGTCGGTGTGGAAAGTATAGAA 59.242 43.478 0.00 0.00 0.00 2.10
585 586 3.127548 GTCGTCGGTGTGGAAAGTATAGA 59.872 47.826 0.00 0.00 0.00 1.98
586 587 3.432782 GTCGTCGGTGTGGAAAGTATAG 58.567 50.000 0.00 0.00 0.00 1.31
587 588 2.159531 CGTCGTCGGTGTGGAAAGTATA 60.160 50.000 0.00 0.00 0.00 1.47
588 589 1.401931 CGTCGTCGGTGTGGAAAGTAT 60.402 52.381 0.00 0.00 0.00 2.12
589 590 0.040157 CGTCGTCGGTGTGGAAAGTA 60.040 55.000 0.00 0.00 0.00 2.24
590 591 1.299620 CGTCGTCGGTGTGGAAAGT 60.300 57.895 0.00 0.00 0.00 2.66
591 592 3.534160 CGTCGTCGGTGTGGAAAG 58.466 61.111 0.00 0.00 0.00 2.62
626 627 1.474498 GGTTTTCACCTGTCAGACCGT 60.474 52.381 0.00 0.00 40.44 4.83
669 670 1.681486 AAAAACAGGGCCGGTTGTGG 61.681 55.000 22.74 0.00 0.00 4.17
715 716 2.112380 ATCGTGCACCATGTCAATGA 57.888 45.000 12.15 0.00 35.67 2.57
771 774 3.364366 CCGCTATGCCATTCGAGATTTTC 60.364 47.826 1.38 0.00 0.00 2.29
837 906 1.525765 TTTGGTGAGCTTGCTCGCA 60.526 52.632 29.34 17.06 35.72 5.10
841 910 1.609208 ATTCGTTTGGTGAGCTTGCT 58.391 45.000 0.00 0.00 0.00 3.91
963 1032 4.704833 AAGCGTGGCGATGGTGCT 62.705 61.111 0.00 0.00 37.53 4.40
964 1033 4.465512 CAAGCGTGGCGATGGTGC 62.466 66.667 0.00 0.00 0.00 5.01
965 1034 2.040213 GATCAAGCGTGGCGATGGTG 62.040 60.000 0.00 0.00 0.00 4.17
966 1035 1.815421 GATCAAGCGTGGCGATGGT 60.815 57.895 0.00 0.00 0.00 3.55
967 1036 2.537560 GGATCAAGCGTGGCGATGG 61.538 63.158 0.00 0.00 0.00 3.51
968 1037 2.874694 CGGATCAAGCGTGGCGATG 61.875 63.158 0.00 0.00 0.00 3.84
969 1038 2.586079 CGGATCAAGCGTGGCGAT 60.586 61.111 0.00 0.00 0.00 4.58
970 1039 3.754530 TCGGATCAAGCGTGGCGA 61.755 61.111 0.00 0.00 0.00 5.54
971 1040 3.554692 GTCGGATCAAGCGTGGCG 61.555 66.667 0.00 0.00 0.00 5.69
972 1041 3.195698 GGTCGGATCAAGCGTGGC 61.196 66.667 0.00 0.00 0.00 5.01
973 1042 2.511600 GGGTCGGATCAAGCGTGG 60.512 66.667 0.00 0.00 0.00 4.94
1287 1356 1.296715 GGTGACGATGGACCTGCTT 59.703 57.895 0.00 0.00 0.00 3.91
1971 2040 7.042725 CGTATTTCATGAACGAGGTACATTGAT 60.043 37.037 7.89 0.00 38.89 2.57
1997 2066 8.936864 GGCTATGGTAATGAACAATATCTACAC 58.063 37.037 0.00 0.00 0.00 2.90
2161 2234 8.141268 CCAACAACAATAAAAATCTACACTGGT 58.859 33.333 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.