Multiple sequence alignment - TraesCS7D01G277000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G277000 chr7D 100.000 6555 0 0 1 6555 265259276 265265830 0.000000e+00 12105.0
1 TraesCS7D01G277000 chr7B 93.880 4951 141 42 911 5796 245673112 245677965 0.000000e+00 7315.0
2 TraesCS7D01G277000 chr7B 87.798 377 16 6 251 621 245672647 245672999 1.320000e-111 414.0
3 TraesCS7D01G277000 chr7B 93.013 229 16 0 1 229 245665725 245665953 1.050000e-87 335.0
4 TraesCS7D01G277000 chr7B 93.939 132 8 0 574 705 245672990 245673121 4.010000e-47 200.0
5 TraesCS7D01G277000 chr7A 93.597 3967 146 47 1621 5546 290284328 290288227 0.000000e+00 5819.0
6 TraesCS7D01G277000 chr7A 92.689 383 18 6 1 383 290282510 290282882 1.610000e-150 544.0
7 TraesCS7D01G277000 chr7A 85.115 524 35 21 911 1405 290283468 290283977 4.570000e-136 496.0
8 TraesCS7D01G277000 chr7A 91.193 352 12 5 5525 5861 290290346 290290693 1.670000e-125 460.0
9 TraesCS7D01G277000 chr7A 92.790 319 14 4 390 705 290283165 290283477 2.790000e-123 453.0
10 TraesCS7D01G277000 chr6D 97.872 611 8 4 5944 6553 143661246 143660640 0.000000e+00 1051.0
11 TraesCS7D01G277000 chr6D 85.854 205 25 2 711 911 458060734 458060938 1.430000e-51 215.0
12 TraesCS7D01G277000 chr6D 85.427 199 25 2 713 911 27733051 27732857 3.100000e-48 204.0
13 TraesCS7D01G277000 chr6D 85.484 186 21 4 726 911 286644984 286645163 8.680000e-44 189.0
14 TraesCS7D01G277000 chr6D 88.667 150 17 0 726 875 93627545 93627694 4.040000e-42 183.0
15 TraesCS7D01G277000 chr6D 88.079 151 17 1 726 875 332550284 332550134 1.880000e-40 178.0
16 TraesCS7D01G277000 chr6D 97.143 35 1 0 726 760 93627712 93627678 7.100000e-05 60.2
17 TraesCS7D01G277000 chr6B 90.667 675 46 13 5867 6529 276669949 276669280 0.000000e+00 881.0
18 TraesCS7D01G277000 chr6B 87.204 633 62 9 5864 6484 240248108 240248733 0.000000e+00 702.0
19 TraesCS7D01G277000 chr6B 84.227 634 75 16 5859 6478 415462481 415463103 1.570000e-165 593.0
20 TraesCS7D01G277000 chr3B 88.777 695 56 15 5859 6537 96829665 96830353 0.000000e+00 832.0
21 TraesCS7D01G277000 chr3B 88.855 655 53 12 5860 6500 685397962 685398610 0.000000e+00 787.0
22 TraesCS7D01G277000 chr3B 89.062 640 53 14 5872 6500 457159128 457158495 0.000000e+00 778.0
23 TraesCS7D01G277000 chr4D 90.299 536 36 10 6005 6531 66933383 66933911 0.000000e+00 688.0
24 TraesCS7D01G277000 chr4D 88.415 164 18 1 712 875 46211222 46211060 5.190000e-46 196.0
25 TraesCS7D01G277000 chr5B 85.605 653 73 12 5864 6502 65536593 65535948 0.000000e+00 665.0
26 TraesCS7D01G277000 chr5B 74.359 663 136 24 2054 2694 546847371 546848021 1.090000e-62 252.0
27 TraesCS7D01G277000 chr5B 78.448 232 35 10 3187 3408 546848634 546848860 3.190000e-28 137.0
28 TraesCS7D01G277000 chr5B 87.379 103 13 0 4542 4644 546850357 546850459 1.150000e-22 119.0
29 TraesCS7D01G277000 chr5B 83.206 131 17 4 2825 2953 43863031 43862904 1.490000e-21 115.0
30 TraesCS7D01G277000 chr5A 73.867 662 142 22 2054 2694 565769285 565769936 1.100000e-57 235.0
31 TraesCS7D01G277000 chr5A 78.355 231 36 10 3187 3408 565770472 565770697 3.190000e-28 137.0
32 TraesCS7D01G277000 chr5D 73.906 663 137 24 2054 2694 447891084 447891732 3.950000e-57 233.0
33 TraesCS7D01G277000 chr5D 90.000 150 15 0 726 875 253983090 253983239 1.860000e-45 195.0
34 TraesCS7D01G277000 chr5D 88.667 150 17 0 726 875 38811396 38811545 4.040000e-42 183.0
35 TraesCS7D01G277000 chr5D 86.585 164 22 0 712 875 431902152 431902315 1.450000e-41 182.0
36 TraesCS7D01G277000 chr5D 86.408 103 14 0 4542 4644 447894038 447894140 5.370000e-21 113.0
37 TraesCS7D01G277000 chr1D 88.485 165 18 1 712 875 6780727 6780563 1.440000e-46 198.0
38 TraesCS7D01G277000 chr1D 90.000 150 15 0 726 875 131413578 131413727 1.860000e-45 195.0
39 TraesCS7D01G277000 chr1B 90.667 150 13 1 726 875 657323975 657323827 1.440000e-46 198.0
40 TraesCS7D01G277000 chr2D 90.000 150 15 0 726 875 59443278 59443129 1.860000e-45 195.0
41 TraesCS7D01G277000 chr2B 86.486 111 11 4 2822 2930 186464775 186464883 1.150000e-22 119.0
42 TraesCS7D01G277000 chr2B 79.508 122 21 4 2818 2938 139796497 139796615 4.210000e-12 84.2
43 TraesCS7D01G277000 chr4B 83.178 107 15 3 2818 2924 486271226 486271329 1.950000e-15 95.3
44 TraesCS7D01G277000 chr4B 95.455 44 2 0 2889 2932 650886085 650886128 3.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G277000 chr7D 265259276 265265830 6554 False 12105.0 12105 100.000000 1 6555 1 chr7D.!!$F1 6554
1 TraesCS7D01G277000 chr7B 245672647 245677965 5318 False 2643.0 7315 91.872333 251 5796 3 chr7B.!!$F2 5545
2 TraesCS7D01G277000 chr7A 290282510 290290693 8183 False 1554.4 5819 91.076800 1 5861 5 chr7A.!!$F1 5860
3 TraesCS7D01G277000 chr6D 143660640 143661246 606 True 1051.0 1051 97.872000 5944 6553 1 chr6D.!!$R3 609
4 TraesCS7D01G277000 chr6B 276669280 276669949 669 True 881.0 881 90.667000 5867 6529 1 chr6B.!!$R1 662
5 TraesCS7D01G277000 chr6B 240248108 240248733 625 False 702.0 702 87.204000 5864 6484 1 chr6B.!!$F1 620
6 TraesCS7D01G277000 chr6B 415462481 415463103 622 False 593.0 593 84.227000 5859 6478 1 chr6B.!!$F2 619
7 TraesCS7D01G277000 chr3B 96829665 96830353 688 False 832.0 832 88.777000 5859 6537 1 chr3B.!!$F1 678
8 TraesCS7D01G277000 chr3B 685397962 685398610 648 False 787.0 787 88.855000 5860 6500 1 chr3B.!!$F2 640
9 TraesCS7D01G277000 chr3B 457158495 457159128 633 True 778.0 778 89.062000 5872 6500 1 chr3B.!!$R1 628
10 TraesCS7D01G277000 chr4D 66933383 66933911 528 False 688.0 688 90.299000 6005 6531 1 chr4D.!!$F1 526
11 TraesCS7D01G277000 chr5B 65535948 65536593 645 True 665.0 665 85.605000 5864 6502 1 chr5B.!!$R2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 1033 0.032952 TTCTCCTTTGACGACGGTGG 59.967 55.000 0.00 0.00 0.00 4.61 F
717 1038 0.032952 CTTTGACGACGGTGGGAAGA 59.967 55.000 0.00 0.00 0.00 2.87 F
884 1205 0.035439 ATCCAACGGCAACCTAGGTG 60.035 55.000 17.14 10.95 0.00 4.00 F
1201 1545 0.108089 GAAAAGCGGAGAGAGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46 F
1298 1642 0.165511 CTTGCTCTGCTCAAAGACGC 59.834 55.000 0.00 0.00 0.00 5.19 F
1324 1668 0.535797 CCGTCTACACTTCCCTTCCC 59.464 60.000 0.00 0.00 0.00 3.97 F
2944 3511 0.752658 AACCTTGGCCAAAGTTCTGC 59.247 50.000 24.00 0.00 33.66 4.26 F
2949 3516 0.771127 TGGCCAAAGTTCTGCCTAGT 59.229 50.000 0.61 0.00 45.56 2.57 F
4762 5341 1.064296 CTACGCTCGCGAGAACCAT 59.936 57.895 38.74 19.58 42.83 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2568 0.110056 GTTGGCAGCATTGAGACACG 60.110 55.000 0.00 0.0 0.00 4.49 R
2263 2827 0.250124 TTGCCGCGAGAAGGAGAAAA 60.250 50.000 8.23 0.0 0.00 2.29 R
2443 3007 1.061546 TGGGGAGTTGGTTCCAGTAC 58.938 55.000 0.00 0.0 39.09 2.73 R
3066 3633 2.292267 CAAGTTAGCAAGATCCGGCAT 58.708 47.619 0.00 0.0 0.00 4.40 R
3086 3653 3.374745 CATCTGGTCTGTTTTTGTGTGC 58.625 45.455 0.00 0.0 0.00 4.57 R
3100 3667 3.473113 AATAAACCAAGCCCATCTGGT 57.527 42.857 0.00 0.0 36.04 4.00 R
4762 5341 0.320073 CCCAAACAACCGACGCTCTA 60.320 55.000 0.00 0.0 0.00 2.43 R
4919 5510 1.202698 AGATGGTAATGCCGAGGAAGC 60.203 52.381 0.00 0.0 41.21 3.86 R
5774 8525 0.179000 CGGAGGGGAAATGAGAGGTG 59.821 60.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.626780 GGTTGAAAGCACGGGAGGC 61.627 63.158 0.00 0.00 0.00 4.70
103 104 4.589374 AGAGGAGAAAAGGACGAGAAAGAA 59.411 41.667 0.00 0.00 0.00 2.52
124 125 3.636679 AGAGGACGAAGATGAAGATGGA 58.363 45.455 0.00 0.00 0.00 3.41
125 126 3.383185 AGAGGACGAAGATGAAGATGGAC 59.617 47.826 0.00 0.00 0.00 4.02
177 178 6.146510 GGTTCGTACACTTGTAAATGTGATGA 59.853 38.462 5.95 0.00 37.59 2.92
229 230 3.242870 GCAATCATTTCCTCCGCACTTAG 60.243 47.826 0.00 0.00 0.00 2.18
237 238 0.247736 CTCCGCACTTAGTTGCTCCT 59.752 55.000 5.56 0.00 40.62 3.69
247 248 2.071778 AGTTGCTCCTTCTGCCAAAA 57.928 45.000 0.00 0.00 0.00 2.44
248 249 2.387757 AGTTGCTCCTTCTGCCAAAAA 58.612 42.857 0.00 0.00 0.00 1.94
314 315 6.017109 AGGATCGGATTGTTTGATTAATTCCG 60.017 38.462 13.79 13.79 39.30 4.30
343 350 0.535553 TGGGGTCAAGCAACGTTACC 60.536 55.000 0.00 4.33 0.00 2.85
505 788 4.189514 GCGAAATATCAACGCGGC 57.810 55.556 12.47 0.00 42.65 6.53
519 802 2.352032 GCGGCACCTACTCCTGTCT 61.352 63.158 0.00 0.00 0.00 3.41
525 808 2.708051 CACCTACTCCTGTCTACACGA 58.292 52.381 0.00 0.00 0.00 4.35
577 860 5.469421 AGCTAGCGTAGTATACTCGTGAAAT 59.531 40.000 9.12 0.00 40.12 2.17
578 861 6.648310 AGCTAGCGTAGTATACTCGTGAAATA 59.352 38.462 9.12 3.37 40.12 1.40
579 862 6.954852 GCTAGCGTAGTATACTCGTGAAATAG 59.045 42.308 9.12 11.29 40.12 1.73
580 863 6.857777 AGCGTAGTATACTCGTGAAATAGT 57.142 37.500 9.12 0.00 40.12 2.12
581 864 7.953158 AGCGTAGTATACTCGTGAAATAGTA 57.047 36.000 9.12 0.00 40.12 1.82
582 865 7.791949 AGCGTAGTATACTCGTGAAATAGTAC 58.208 38.462 9.12 13.54 40.12 2.73
635 956 9.010029 GGGAAAAAGAAAAAGAAAAAGAAAGGT 57.990 29.630 0.00 0.00 0.00 3.50
678 999 1.123077 TGGGTTCCGAGATGAGATGG 58.877 55.000 0.00 0.00 0.00 3.51
697 1018 2.900546 TGGGACTGAAACTCTCCTTCTC 59.099 50.000 0.00 0.00 0.00 2.87
698 1019 2.235155 GGGACTGAAACTCTCCTTCTCC 59.765 54.545 0.00 0.00 0.00 3.71
699 1020 3.169908 GGACTGAAACTCTCCTTCTCCT 58.830 50.000 0.00 0.00 0.00 3.69
700 1021 3.580895 GGACTGAAACTCTCCTTCTCCTT 59.419 47.826 0.00 0.00 0.00 3.36
701 1022 4.041075 GGACTGAAACTCTCCTTCTCCTTT 59.959 45.833 0.00 0.00 0.00 3.11
702 1023 4.967036 ACTGAAACTCTCCTTCTCCTTTG 58.033 43.478 0.00 0.00 0.00 2.77
703 1024 4.656112 ACTGAAACTCTCCTTCTCCTTTGA 59.344 41.667 0.00 0.00 0.00 2.69
704 1025 4.962155 TGAAACTCTCCTTCTCCTTTGAC 58.038 43.478 0.00 0.00 0.00 3.18
705 1026 3.669251 AACTCTCCTTCTCCTTTGACG 57.331 47.619 0.00 0.00 0.00 4.35
706 1027 2.877866 ACTCTCCTTCTCCTTTGACGA 58.122 47.619 0.00 0.00 0.00 4.20
707 1028 2.559231 ACTCTCCTTCTCCTTTGACGAC 59.441 50.000 0.00 0.00 0.00 4.34
708 1029 1.540267 TCTCCTTCTCCTTTGACGACG 59.460 52.381 0.00 0.00 0.00 5.12
709 1030 0.601558 TCCTTCTCCTTTGACGACGG 59.398 55.000 0.00 0.00 0.00 4.79
710 1031 0.317479 CCTTCTCCTTTGACGACGGT 59.683 55.000 0.00 0.00 0.00 4.83
711 1032 1.419374 CTTCTCCTTTGACGACGGTG 58.581 55.000 0.00 0.00 0.00 4.94
712 1033 0.032952 TTCTCCTTTGACGACGGTGG 59.967 55.000 0.00 0.00 0.00 4.61
713 1034 1.374252 CTCCTTTGACGACGGTGGG 60.374 63.158 0.00 0.00 0.00 4.61
714 1035 1.812686 CTCCTTTGACGACGGTGGGA 61.813 60.000 0.00 0.00 0.00 4.37
715 1036 1.070105 CCTTTGACGACGGTGGGAA 59.930 57.895 0.00 0.00 0.00 3.97
716 1037 0.949105 CCTTTGACGACGGTGGGAAG 60.949 60.000 0.00 0.00 0.00 3.46
717 1038 0.032952 CTTTGACGACGGTGGGAAGA 59.967 55.000 0.00 0.00 0.00 2.87
718 1039 0.682852 TTTGACGACGGTGGGAAGAT 59.317 50.000 0.00 0.00 0.00 2.40
719 1040 1.548081 TTGACGACGGTGGGAAGATA 58.452 50.000 0.00 0.00 0.00 1.98
720 1041 1.771565 TGACGACGGTGGGAAGATAT 58.228 50.000 0.00 0.00 0.00 1.63
721 1042 1.407618 TGACGACGGTGGGAAGATATG 59.592 52.381 0.00 0.00 0.00 1.78
722 1043 1.407979 GACGACGGTGGGAAGATATGT 59.592 52.381 0.00 0.00 0.00 2.29
723 1044 1.136305 ACGACGGTGGGAAGATATGTG 59.864 52.381 0.00 0.00 0.00 3.21
724 1045 1.407618 CGACGGTGGGAAGATATGTGA 59.592 52.381 0.00 0.00 0.00 3.58
725 1046 2.035961 CGACGGTGGGAAGATATGTGAT 59.964 50.000 0.00 0.00 0.00 3.06
726 1047 3.393800 GACGGTGGGAAGATATGTGATG 58.606 50.000 0.00 0.00 0.00 3.07
727 1048 2.146342 CGGTGGGAAGATATGTGATGC 58.854 52.381 0.00 0.00 0.00 3.91
728 1049 2.224378 CGGTGGGAAGATATGTGATGCT 60.224 50.000 0.00 0.00 0.00 3.79
729 1050 3.745480 CGGTGGGAAGATATGTGATGCTT 60.745 47.826 0.00 0.00 0.00 3.91
730 1051 3.817647 GGTGGGAAGATATGTGATGCTTC 59.182 47.826 0.00 0.00 36.81 3.86
731 1052 3.496130 GTGGGAAGATATGTGATGCTTCG 59.504 47.826 0.00 0.00 38.05 3.79
732 1053 3.070018 GGGAAGATATGTGATGCTTCGG 58.930 50.000 0.00 0.00 38.05 4.30
733 1054 3.070018 GGAAGATATGTGATGCTTCGGG 58.930 50.000 0.00 0.00 38.05 5.14
734 1055 3.244215 GGAAGATATGTGATGCTTCGGGA 60.244 47.826 0.00 0.00 38.05 5.14
735 1056 3.674528 AGATATGTGATGCTTCGGGAG 57.325 47.619 0.00 0.00 0.00 4.30
752 1073 4.625800 GCTTCTCAGCCGTTGGAT 57.374 55.556 0.00 0.00 40.61 3.41
753 1074 2.388347 GCTTCTCAGCCGTTGGATC 58.612 57.895 0.00 0.00 40.61 3.36
754 1075 0.107945 GCTTCTCAGCCGTTGGATCT 60.108 55.000 0.00 0.00 40.61 2.75
755 1076 1.137086 GCTTCTCAGCCGTTGGATCTA 59.863 52.381 0.00 0.00 40.61 1.98
756 1077 2.418746 GCTTCTCAGCCGTTGGATCTAA 60.419 50.000 0.00 0.00 40.61 2.10
757 1078 3.861840 CTTCTCAGCCGTTGGATCTAAA 58.138 45.455 0.00 0.00 0.00 1.85
758 1079 3.973206 TCTCAGCCGTTGGATCTAAAA 57.027 42.857 0.00 0.00 0.00 1.52
759 1080 4.487714 TCTCAGCCGTTGGATCTAAAAT 57.512 40.909 0.00 0.00 0.00 1.82
760 1081 4.843728 TCTCAGCCGTTGGATCTAAAATT 58.156 39.130 0.00 0.00 0.00 1.82
761 1082 4.876107 TCTCAGCCGTTGGATCTAAAATTC 59.124 41.667 0.00 0.00 0.00 2.17
762 1083 4.584874 TCAGCCGTTGGATCTAAAATTCA 58.415 39.130 0.00 0.00 0.00 2.57
763 1084 5.007034 TCAGCCGTTGGATCTAAAATTCAA 58.993 37.500 0.00 0.00 0.00 2.69
764 1085 5.475220 TCAGCCGTTGGATCTAAAATTCAAA 59.525 36.000 0.00 0.00 0.00 2.69
765 1086 5.801947 CAGCCGTTGGATCTAAAATTCAAAG 59.198 40.000 0.00 0.00 0.00 2.77
766 1087 5.102313 GCCGTTGGATCTAAAATTCAAAGG 58.898 41.667 6.64 6.64 39.04 3.11
767 1088 5.336451 GCCGTTGGATCTAAAATTCAAAGGT 60.336 40.000 11.16 0.00 38.55 3.50
768 1089 6.322491 CCGTTGGATCTAAAATTCAAAGGTC 58.678 40.000 0.00 0.00 34.11 3.85
769 1090 6.072175 CCGTTGGATCTAAAATTCAAAGGTCA 60.072 38.462 0.00 0.00 34.11 4.02
770 1091 7.367285 CGTTGGATCTAAAATTCAAAGGTCAA 58.633 34.615 0.00 0.00 0.00 3.18
771 1092 7.538678 CGTTGGATCTAAAATTCAAAGGTCAAG 59.461 37.037 0.00 0.00 0.00 3.02
772 1093 8.576442 GTTGGATCTAAAATTCAAAGGTCAAGA 58.424 33.333 0.00 0.00 0.00 3.02
773 1094 8.704849 TGGATCTAAAATTCAAAGGTCAAGAA 57.295 30.769 0.00 0.00 0.00 2.52
774 1095 9.142014 TGGATCTAAAATTCAAAGGTCAAGAAA 57.858 29.630 0.00 0.00 0.00 2.52
775 1096 9.981114 GGATCTAAAATTCAAAGGTCAAGAAAA 57.019 29.630 0.00 0.00 0.00 2.29
779 1100 7.776933 AAAATTCAAAGGTCAAGAAAAGAGC 57.223 32.000 0.00 0.00 0.00 4.09
780 1101 6.721704 AATTCAAAGGTCAAGAAAAGAGCT 57.278 33.333 0.00 0.00 44.98 4.09
784 1105 1.876156 AGGTCAAGAAAAGAGCTTGCG 59.124 47.619 0.00 0.00 40.65 4.85
785 1106 1.664302 GGTCAAGAAAAGAGCTTGCGC 60.664 52.381 0.00 0.00 41.83 6.09
786 1107 1.002468 GTCAAGAAAAGAGCTTGCGCA 60.002 47.619 5.66 5.66 41.83 6.09
787 1108 1.881973 TCAAGAAAAGAGCTTGCGCAT 59.118 42.857 12.75 0.00 41.83 4.73
788 1109 2.294233 TCAAGAAAAGAGCTTGCGCATT 59.706 40.909 12.75 0.00 41.83 3.56
789 1110 3.054878 CAAGAAAAGAGCTTGCGCATTT 58.945 40.909 12.75 7.66 36.66 2.32
790 1111 4.023279 TCAAGAAAAGAGCTTGCGCATTTA 60.023 37.500 12.75 0.00 41.83 1.40
791 1112 4.708726 AGAAAAGAGCTTGCGCATTTAT 57.291 36.364 12.75 1.39 39.10 1.40
792 1113 5.064441 AGAAAAGAGCTTGCGCATTTATT 57.936 34.783 12.75 0.03 39.10 1.40
793 1114 5.473039 AGAAAAGAGCTTGCGCATTTATTT 58.527 33.333 12.75 8.49 39.10 1.40
794 1115 6.620678 AGAAAAGAGCTTGCGCATTTATTTA 58.379 32.000 12.75 0.00 39.10 1.40
795 1116 7.090173 AGAAAAGAGCTTGCGCATTTATTTAA 58.910 30.769 12.75 0.00 39.10 1.52
796 1117 7.598493 AGAAAAGAGCTTGCGCATTTATTTAAA 59.402 29.630 12.75 0.00 39.10 1.52
797 1118 7.650834 AAAGAGCTTGCGCATTTATTTAAAA 57.349 28.000 12.75 0.00 39.10 1.52
798 1119 7.650834 AAGAGCTTGCGCATTTATTTAAAAA 57.349 28.000 12.75 0.00 39.10 1.94
818 1139 5.664294 AAAAACACCCCTAAAAGTTCGTT 57.336 34.783 0.00 0.00 0.00 3.85
819 1140 6.772360 AAAAACACCCCTAAAAGTTCGTTA 57.228 33.333 0.00 0.00 0.00 3.18
820 1141 6.964807 AAAACACCCCTAAAAGTTCGTTAT 57.035 33.333 0.00 0.00 0.00 1.89
821 1142 6.964807 AAACACCCCTAAAAGTTCGTTATT 57.035 33.333 0.00 0.00 0.00 1.40
822 1143 8.462589 AAAACACCCCTAAAAGTTCGTTATTA 57.537 30.769 0.00 0.00 0.00 0.98
823 1144 7.439157 AACACCCCTAAAAGTTCGTTATTAC 57.561 36.000 0.00 0.00 0.00 1.89
824 1145 6.532826 ACACCCCTAAAAGTTCGTTATTACA 58.467 36.000 0.00 0.00 0.00 2.41
825 1146 6.997476 ACACCCCTAAAAGTTCGTTATTACAA 59.003 34.615 0.00 0.00 0.00 2.41
826 1147 7.041167 ACACCCCTAAAAGTTCGTTATTACAAC 60.041 37.037 0.00 0.00 0.00 3.32
827 1148 6.430925 ACCCCTAAAAGTTCGTTATTACAACC 59.569 38.462 0.00 0.00 0.00 3.77
828 1149 6.430616 CCCCTAAAAGTTCGTTATTACAACCA 59.569 38.462 0.00 0.00 0.00 3.67
829 1150 7.361457 CCCCTAAAAGTTCGTTATTACAACCAG 60.361 40.741 0.00 0.00 0.00 4.00
830 1151 7.388500 CCCTAAAAGTTCGTTATTACAACCAGA 59.612 37.037 0.00 0.00 0.00 3.86
831 1152 8.943002 CCTAAAAGTTCGTTATTACAACCAGAT 58.057 33.333 0.00 0.00 0.00 2.90
834 1155 7.972832 AAGTTCGTTATTACAACCAGATTCA 57.027 32.000 0.00 0.00 0.00 2.57
835 1156 7.596749 AGTTCGTTATTACAACCAGATTCAG 57.403 36.000 0.00 0.00 0.00 3.02
836 1157 6.092259 AGTTCGTTATTACAACCAGATTCAGC 59.908 38.462 0.00 0.00 0.00 4.26
837 1158 4.565166 TCGTTATTACAACCAGATTCAGCG 59.435 41.667 0.00 0.00 0.00 5.18
838 1159 4.328983 CGTTATTACAACCAGATTCAGCGT 59.671 41.667 0.00 0.00 0.00 5.07
839 1160 5.517411 CGTTATTACAACCAGATTCAGCGTA 59.483 40.000 0.00 0.00 0.00 4.42
840 1161 6.200286 CGTTATTACAACCAGATTCAGCGTAT 59.800 38.462 0.00 0.00 0.00 3.06
841 1162 7.254319 CGTTATTACAACCAGATTCAGCGTATT 60.254 37.037 0.00 0.00 0.00 1.89
842 1163 6.604735 ATTACAACCAGATTCAGCGTATTC 57.395 37.500 0.00 0.00 0.00 1.75
843 1164 3.270877 ACAACCAGATTCAGCGTATTCC 58.729 45.455 0.00 0.00 0.00 3.01
844 1165 3.055094 ACAACCAGATTCAGCGTATTCCT 60.055 43.478 0.00 0.00 0.00 3.36
845 1166 4.161565 ACAACCAGATTCAGCGTATTCCTA 59.838 41.667 0.00 0.00 0.00 2.94
846 1167 5.163301 ACAACCAGATTCAGCGTATTCCTAT 60.163 40.000 0.00 0.00 0.00 2.57
847 1168 6.041637 ACAACCAGATTCAGCGTATTCCTATA 59.958 38.462 0.00 0.00 0.00 1.31
848 1169 6.859112 ACCAGATTCAGCGTATTCCTATAT 57.141 37.500 0.00 0.00 0.00 0.86
849 1170 6.634805 ACCAGATTCAGCGTATTCCTATATG 58.365 40.000 0.00 0.00 0.00 1.78
850 1171 6.437477 ACCAGATTCAGCGTATTCCTATATGA 59.563 38.462 0.00 0.00 0.00 2.15
851 1172 6.754209 CCAGATTCAGCGTATTCCTATATGAC 59.246 42.308 0.00 0.00 0.00 3.06
852 1173 6.754209 CAGATTCAGCGTATTCCTATATGACC 59.246 42.308 0.00 0.00 0.00 4.02
853 1174 4.696899 TCAGCGTATTCCTATATGACCG 57.303 45.455 0.00 0.00 0.00 4.79
854 1175 4.077108 TCAGCGTATTCCTATATGACCGT 58.923 43.478 0.00 0.00 0.00 4.83
855 1176 4.155462 TCAGCGTATTCCTATATGACCGTC 59.845 45.833 0.00 0.00 0.00 4.79
856 1177 4.077108 AGCGTATTCCTATATGACCGTCA 58.923 43.478 3.10 3.10 0.00 4.35
857 1178 4.156190 AGCGTATTCCTATATGACCGTCAG 59.844 45.833 7.41 0.00 0.00 3.51
858 1179 4.155462 GCGTATTCCTATATGACCGTCAGA 59.845 45.833 7.41 2.42 0.00 3.27
859 1180 5.163642 GCGTATTCCTATATGACCGTCAGAT 60.164 44.000 13.01 13.01 32.49 2.90
860 1181 6.625300 GCGTATTCCTATATGACCGTCAGATT 60.625 42.308 13.62 0.00 30.15 2.40
861 1182 7.414873 GCGTATTCCTATATGACCGTCAGATTA 60.415 40.741 13.62 0.00 30.15 1.75
862 1183 8.622157 CGTATTCCTATATGACCGTCAGATTAT 58.378 37.037 13.62 6.23 30.15 1.28
865 1186 9.922477 ATTCCTATATGACCGTCAGATTATAGA 57.078 33.333 20.11 9.51 30.15 1.98
866 1187 9.922477 TTCCTATATGACCGTCAGATTATAGAT 57.078 33.333 20.11 1.54 30.15 1.98
867 1188 9.562408 TCCTATATGACCGTCAGATTATAGATC 57.438 37.037 20.11 0.00 30.15 2.75
868 1189 8.788806 CCTATATGACCGTCAGATTATAGATCC 58.211 40.741 20.11 0.00 30.15 3.36
869 1190 9.343539 CTATATGACCGTCAGATTATAGATCCA 57.656 37.037 13.62 0.00 30.15 3.41
870 1191 6.918067 ATGACCGTCAGATTATAGATCCAA 57.082 37.500 7.41 0.00 0.00 3.53
871 1192 6.085555 TGACCGTCAGATTATAGATCCAAC 57.914 41.667 0.00 0.00 0.00 3.77
872 1193 5.122512 ACCGTCAGATTATAGATCCAACG 57.877 43.478 0.00 0.00 0.00 4.10
873 1194 4.022242 ACCGTCAGATTATAGATCCAACGG 60.022 45.833 19.60 19.60 44.86 4.44
874 1195 3.921021 CGTCAGATTATAGATCCAACGGC 59.079 47.826 0.00 0.00 0.00 5.68
875 1196 4.558697 CGTCAGATTATAGATCCAACGGCA 60.559 45.833 0.00 0.00 0.00 5.69
876 1197 5.297547 GTCAGATTATAGATCCAACGGCAA 58.702 41.667 0.00 0.00 0.00 4.52
877 1198 5.177696 GTCAGATTATAGATCCAACGGCAAC 59.822 44.000 0.00 0.00 0.00 4.17
878 1199 4.452455 CAGATTATAGATCCAACGGCAACC 59.548 45.833 0.00 0.00 0.00 3.77
879 1200 4.348168 AGATTATAGATCCAACGGCAACCT 59.652 41.667 0.00 0.00 0.00 3.50
880 1201 5.542635 AGATTATAGATCCAACGGCAACCTA 59.457 40.000 0.00 0.00 0.00 3.08
881 1202 3.753294 ATAGATCCAACGGCAACCTAG 57.247 47.619 0.00 0.00 0.00 3.02
882 1203 0.541863 AGATCCAACGGCAACCTAGG 59.458 55.000 7.41 7.41 0.00 3.02
883 1204 0.252197 GATCCAACGGCAACCTAGGT 59.748 55.000 9.21 9.21 0.00 3.08
884 1205 0.035439 ATCCAACGGCAACCTAGGTG 60.035 55.000 17.14 10.95 0.00 4.00
885 1206 2.332654 CCAACGGCAACCTAGGTGC 61.333 63.158 17.14 19.83 0.00 5.01
886 1207 1.302511 CAACGGCAACCTAGGTGCT 60.303 57.895 25.60 8.07 0.00 4.40
887 1208 1.003718 AACGGCAACCTAGGTGCTC 60.004 57.895 25.60 18.10 0.00 4.26
888 1209 2.125106 CGGCAACCTAGGTGCTCC 60.125 66.667 25.60 20.30 0.00 4.70
889 1210 2.272471 GGCAACCTAGGTGCTCCC 59.728 66.667 25.60 16.36 0.00 4.30
890 1211 2.125106 GCAACCTAGGTGCTCCCG 60.125 66.667 17.14 1.34 38.74 5.14
891 1212 2.955881 GCAACCTAGGTGCTCCCGT 61.956 63.158 17.14 0.00 38.74 5.28
892 1213 1.610554 GCAACCTAGGTGCTCCCGTA 61.611 60.000 17.14 0.00 38.74 4.02
893 1214 0.460311 CAACCTAGGTGCTCCCGTAG 59.540 60.000 17.14 0.00 38.74 3.51
902 1223 4.169271 CTCCCGTAGCACCCGATA 57.831 61.111 0.00 0.00 0.00 2.92
903 1224 2.654802 CTCCCGTAGCACCCGATAT 58.345 57.895 0.00 0.00 0.00 1.63
904 1225 0.966920 CTCCCGTAGCACCCGATATT 59.033 55.000 0.00 0.00 0.00 1.28
905 1226 1.343465 CTCCCGTAGCACCCGATATTT 59.657 52.381 0.00 0.00 0.00 1.40
906 1227 1.764134 TCCCGTAGCACCCGATATTTT 59.236 47.619 0.00 0.00 0.00 1.82
907 1228 2.140717 CCCGTAGCACCCGATATTTTC 58.859 52.381 0.00 0.00 0.00 2.29
908 1229 2.140717 CCGTAGCACCCGATATTTTCC 58.859 52.381 0.00 0.00 0.00 3.13
909 1230 2.140717 CGTAGCACCCGATATTTTCCC 58.859 52.381 0.00 0.00 0.00 3.97
953 1282 4.096003 TCTGCGGGCCAGCTAACC 62.096 66.667 28.31 0.00 41.50 2.85
1132 1473 4.379302 AGAGAAATCTCCAGCCTTGTTT 57.621 40.909 6.81 0.00 43.88 2.83
1151 1492 0.894184 TTCTTCCTCTCCGTCTGCGT 60.894 55.000 0.00 0.00 36.15 5.24
1156 1500 3.102107 CTCTCCGTCTGCGTCCTCG 62.102 68.421 0.00 0.00 40.37 4.63
1176 1520 2.843081 GGGAAGAAACTAGGGTAGGGT 58.157 52.381 0.00 0.00 0.00 4.34
1201 1545 0.108089 GAAAAGCGGAGAGAGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
1297 1641 1.788258 TCTTGCTCTGCTCAAAGACG 58.212 50.000 0.00 0.00 0.00 4.18
1298 1642 0.165511 CTTGCTCTGCTCAAAGACGC 59.834 55.000 0.00 0.00 0.00 5.19
1299 1643 1.560004 TTGCTCTGCTCAAAGACGCG 61.560 55.000 3.53 3.53 0.00 6.01
1300 1644 2.774774 CTCTGCTCAAAGACGCGC 59.225 61.111 5.73 0.00 0.00 6.86
1301 1645 2.734673 CTCTGCTCAAAGACGCGCC 61.735 63.158 5.73 0.00 0.00 6.53
1324 1668 0.535797 CCGTCTACACTTCCCTTCCC 59.464 60.000 0.00 0.00 0.00 3.97
1336 1704 3.285290 TCCCTTCCCTAGTTCCTTTGA 57.715 47.619 0.00 0.00 0.00 2.69
1426 1803 4.081642 TCGTCCCTTCTTTTGTCTCCATAG 60.082 45.833 0.00 0.00 0.00 2.23
1432 1809 7.342284 TCCCTTCTTTTGTCTCCATAGTAGTAG 59.658 40.741 0.00 0.00 0.00 2.57
1548 1991 0.971386 AGCTCTGGGCCAATTTTGTG 59.029 50.000 8.04 0.00 43.05 3.33
1693 2232 9.878599 CTAACGTAGAATTCAATTCAACTTGTT 57.121 29.630 12.74 10.82 41.71 2.83
1695 2234 8.560576 ACGTAGAATTCAATTCAACTTGTTTG 57.439 30.769 12.74 0.00 41.71 2.93
1696 2235 7.647715 ACGTAGAATTCAATTCAACTTGTTTGG 59.352 33.333 12.74 0.00 41.71 3.28
1698 2237 9.313118 GTAGAATTCAATTCAACTTGTTTGGTT 57.687 29.630 12.74 0.00 41.71 3.67
1701 2240 8.735692 AATTCAATTCAACTTGTTTGGTTCAT 57.264 26.923 7.11 0.00 35.69 2.57
1702 2241 8.735692 ATTCAATTCAACTTGTTTGGTTCATT 57.264 26.923 7.11 0.00 35.69 2.57
1703 2242 7.769272 TCAATTCAACTTGTTTGGTTCATTC 57.231 32.000 7.11 0.00 35.69 2.67
1762 2316 8.757164 AATGAATTACTTCCAATTTTTCCGAC 57.243 30.769 0.00 0.00 0.00 4.79
1911 2466 8.352201 TCAGAAAGTAATACATTTATGCCATGC 58.648 33.333 0.00 0.00 29.84 4.06
2008 2568 7.746475 CGTCCTGAACTGATAGAAAATTCAAAC 59.254 37.037 0.00 0.00 0.00 2.93
2041 2601 5.252547 TGCTGCCAACTTTCATACTTATGA 58.747 37.500 0.00 0.00 40.69 2.15
2263 2827 3.338249 ACTTGTGCTCTGCATTTATCGT 58.662 40.909 0.00 0.00 41.91 3.73
2443 3007 1.515081 CCTGCAAAAACTGGCATTGG 58.485 50.000 1.19 0.00 39.65 3.16
2600 3167 3.190535 TCGGAGGCTTTATTTGTGCTTTC 59.809 43.478 0.00 0.00 0.00 2.62
2717 3284 5.849475 ACACTCCCCAACATATATGTGGATA 59.151 40.000 24.41 15.55 41.61 2.59
2808 3375 2.302445 CCCTGCCAATTTTTGTCATGGA 59.698 45.455 0.00 0.00 34.82 3.41
2809 3376 3.244491 CCCTGCCAATTTTTGTCATGGAA 60.244 43.478 0.00 0.00 34.82 3.53
2810 3377 4.566070 CCCTGCCAATTTTTGTCATGGAAT 60.566 41.667 0.00 0.00 34.82 3.01
2812 3379 6.350906 CCTGCCAATTTTTGTCATGGAATAT 58.649 36.000 0.00 0.00 34.82 1.28
2813 3380 7.418827 CCCTGCCAATTTTTGTCATGGAATATA 60.419 37.037 0.00 0.00 34.82 0.86
2883 3450 1.524482 CCAACCTGCCCTCTCTAGC 59.476 63.158 0.00 0.00 0.00 3.42
2944 3511 0.752658 AACCTTGGCCAAAGTTCTGC 59.247 50.000 24.00 0.00 33.66 4.26
2949 3516 0.771127 TGGCCAAAGTTCTGCCTAGT 59.229 50.000 0.61 0.00 45.56 2.57
3066 3633 7.657336 AGAAGTGAAAAACTGAAAACTTGTGA 58.343 30.769 0.00 0.00 39.81 3.58
3086 3653 1.737838 TGCCGGATCTTGCTAACTTG 58.262 50.000 5.05 0.00 0.00 3.16
3100 3667 4.082517 TGCTAACTTGCACACAAAAACAGA 60.083 37.500 0.00 0.00 38.12 3.41
3277 3846 3.057174 TGCCGGGTATTTGCTACAAAAAG 60.057 43.478 2.18 0.00 31.44 2.27
3296 3865 9.750125 ACAAAAAGACCATATTTTCTTCAGTTC 57.250 29.630 0.00 0.00 30.55 3.01
3316 3885 8.677300 TCAGTTCTAATTTGCATACCTGATTTC 58.323 33.333 0.00 0.00 0.00 2.17
3409 3978 2.510800 ACTACTAGTCTCCTCTGGGTCC 59.489 54.545 0.00 0.00 0.00 4.46
3737 4306 7.044798 ACTGTATAGCTCTGAAAGAATTGGTC 58.955 38.462 0.00 0.00 46.34 4.02
4044 4614 3.260740 GAGTGAAGTGCCTCAAGATGAG 58.739 50.000 0.32 0.32 43.91 2.90
4167 4737 2.365293 GTGCACACCTCCAAGGATTTTT 59.635 45.455 13.17 0.00 37.67 1.94
4170 4740 3.552890 GCACACCTCCAAGGATTTTTGTC 60.553 47.826 0.00 0.00 37.67 3.18
4393 4972 1.171308 CCACTGGACATGCTGAAAGG 58.829 55.000 0.00 0.00 0.00 3.11
4618 5197 1.364626 CTAGCAGTTTGAGCAGCCCG 61.365 60.000 0.00 0.00 0.00 6.13
4711 5290 3.215568 CCAACCACGCAGGCAACA 61.216 61.111 0.00 0.00 43.14 3.33
4712 5291 2.780094 CCAACCACGCAGGCAACAA 61.780 57.895 0.00 0.00 43.14 2.83
4713 5292 1.588667 CAACCACGCAGGCAACAAC 60.589 57.895 0.00 0.00 43.14 3.32
4733 5312 2.225167 ACCAACCCAATAATGTTCCGGT 60.225 45.455 0.00 0.00 0.00 5.28
4735 5314 2.032680 ACCCAATAATGTTCCGGTCG 57.967 50.000 0.00 0.00 0.00 4.79
4761 5340 2.483745 CTACGCTCGCGAGAACCA 59.516 61.111 38.74 18.47 42.83 3.67
4762 5341 1.064296 CTACGCTCGCGAGAACCAT 59.936 57.895 38.74 19.58 42.83 3.55
4919 5510 3.672255 CTTGCGCCAATGAGTGCCG 62.672 63.158 4.18 0.00 42.69 5.69
4948 5539 1.408683 GCATTACCATCTGGACAGCCA 60.409 52.381 2.55 0.00 43.47 4.75
5185 5776 1.388547 ACAGGTGAAGCGCAAAGAAA 58.611 45.000 11.47 0.00 0.00 2.52
5303 5894 2.238144 TGCAAGCCTAGAAGAATCTGCT 59.762 45.455 0.00 0.00 36.72 4.24
5305 5896 3.871485 CAAGCCTAGAAGAATCTGCTGT 58.129 45.455 0.00 0.00 35.68 4.40
5314 5905 4.942483 AGAAGAATCTGCTGTCCATCTTTG 59.058 41.667 0.00 0.00 33.59 2.77
5315 5906 3.618351 AGAATCTGCTGTCCATCTTTGG 58.382 45.455 0.00 0.00 45.15 3.28
5316 5907 8.217949 AGAAGAATCTGCTGTCCATCTTTGGA 62.218 42.308 0.00 0.00 41.37 3.53
5317 5908 9.897149 AGAAGAATCTGCTGTCCATCTTTGGAG 62.897 44.444 0.00 0.00 43.00 3.86
5347 5938 4.080299 AGGGGGATCATTTACTGTCAAGTC 60.080 45.833 0.00 0.00 37.88 3.01
5405 5996 4.222124 AGACCCAGTGACATATGAAACC 57.778 45.455 10.38 0.00 0.00 3.27
5478 6069 0.818040 GTTCCCTCGTTGTGGTGCTT 60.818 55.000 0.00 0.00 0.00 3.91
5480 6071 2.260869 CCCTCGTTGTGGTGCTTGG 61.261 63.158 0.00 0.00 0.00 3.61
5481 6072 2.260869 CCTCGTTGTGGTGCTTGGG 61.261 63.158 0.00 0.00 0.00 4.12
5482 6073 1.227823 CTCGTTGTGGTGCTTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
5634 8383 1.823169 TTGTCTGGGCAGTCCGTACC 61.823 60.000 0.00 0.00 38.76 3.34
5723 8472 0.254747 CCACCGGCCCTAGAAAATCA 59.745 55.000 0.00 0.00 0.00 2.57
5724 8473 1.133792 CCACCGGCCCTAGAAAATCAT 60.134 52.381 0.00 0.00 0.00 2.45
5773 8524 3.449746 AGCCACTCTTACTCTCACTCT 57.550 47.619 0.00 0.00 0.00 3.24
5774 8525 3.352648 AGCCACTCTTACTCTCACTCTC 58.647 50.000 0.00 0.00 0.00 3.20
5788 8539 2.834549 TCACTCTCACCTCTCATTTCCC 59.165 50.000 0.00 0.00 0.00 3.97
5798 8549 1.555075 TCTCATTTCCCCTCCGTTCTG 59.445 52.381 0.00 0.00 0.00 3.02
5800 8551 0.328258 CATTTCCCCTCCGTTCTGGT 59.672 55.000 0.00 0.00 39.52 4.00
5852 8603 7.816513 TGTATCTTATAGTGCAAGATGATGAGC 59.183 37.037 7.90 0.00 41.64 4.26
5861 8612 4.082408 TGCAAGATGATGAGCTTTTCTTGG 60.082 41.667 18.41 7.78 42.13 3.61
5862 8613 4.157289 GCAAGATGATGAGCTTTTCTTGGA 59.843 41.667 18.41 0.00 42.13 3.53
5863 8614 5.638783 CAAGATGATGAGCTTTTCTTGGAC 58.361 41.667 13.10 0.00 39.57 4.02
5864 8615 5.176741 AGATGATGAGCTTTTCTTGGACT 57.823 39.130 0.00 0.00 0.00 3.85
5865 8616 6.305272 AGATGATGAGCTTTTCTTGGACTA 57.695 37.500 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.655651 TTCTTATGGTTTTGGCTTTTAACAAG 57.344 30.769 0.00 0.00 0.00 3.16
103 104 3.383185 GTCCATCTTCATCTTCGTCCTCT 59.617 47.826 0.00 0.00 0.00 3.69
124 125 4.021925 GGCGGGTGCTCTCTTGGT 62.022 66.667 0.00 0.00 42.25 3.67
153 154 7.112528 TCATCACATTTACAAGTGTACGAAC 57.887 36.000 0.00 0.00 37.07 3.95
177 178 7.642669 CGTTATTGATCAGTAATGATGCCTTT 58.357 34.615 20.10 0.00 0.00 3.11
195 196 3.441496 AATGATTGCCAGGCGTTATTG 57.559 42.857 7.03 0.00 0.00 1.90
229 230 2.888834 TTTTTGGCAGAAGGAGCAAC 57.111 45.000 0.00 0.00 0.00 4.17
247 248 2.356382 TGATCGCCTCGTTTGTTTGTTT 59.644 40.909 0.00 0.00 0.00 2.83
248 249 1.944024 TGATCGCCTCGTTTGTTTGTT 59.056 42.857 0.00 0.00 0.00 2.83
249 250 1.588674 TGATCGCCTCGTTTGTTTGT 58.411 45.000 0.00 0.00 0.00 2.83
254 255 4.088648 GTGTAAAATGATCGCCTCGTTTG 58.911 43.478 5.97 0.00 41.27 2.93
314 315 0.037975 CTTGACCCCAAAGCATGCAC 60.038 55.000 21.98 1.30 0.00 4.57
490 773 1.014352 AGGTGCCGCGTTGATATTTC 58.986 50.000 4.92 0.00 0.00 2.17
502 785 0.739561 GTAGACAGGAGTAGGTGCCG 59.260 60.000 0.00 0.00 0.00 5.69
505 788 2.708051 TCGTGTAGACAGGAGTAGGTG 58.292 52.381 1.04 0.00 36.04 4.00
519 802 2.863401 ATGCGCAGATACTTCGTGTA 57.137 45.000 18.32 0.00 35.37 2.90
525 808 3.384789 TCCTACTGAATGCGCAGATACTT 59.615 43.478 18.32 4.14 39.20 2.24
577 860 6.152831 TCTCACTCTGCTTTGCATTAGTACTA 59.847 38.462 0.00 0.00 38.13 1.82
578 861 5.047021 TCTCACTCTGCTTTGCATTAGTACT 60.047 40.000 0.00 0.00 38.13 2.73
579 862 5.062809 GTCTCACTCTGCTTTGCATTAGTAC 59.937 44.000 0.00 0.00 38.13 2.73
580 863 5.171476 GTCTCACTCTGCTTTGCATTAGTA 58.829 41.667 0.00 0.00 38.13 1.82
581 864 3.999663 GTCTCACTCTGCTTTGCATTAGT 59.000 43.478 0.00 0.00 38.13 2.24
582 865 3.061831 CGTCTCACTCTGCTTTGCATTAG 59.938 47.826 0.00 0.00 38.13 1.73
635 956 3.052082 GCGGCAGAGAGCTTTGCA 61.052 61.111 13.93 0.00 44.79 4.08
678 999 3.169908 AGGAGAAGGAGAGTTTCAGTCC 58.830 50.000 0.00 0.00 0.00 3.85
697 1018 0.949105 CTTCCCACCGTCGTCAAAGG 60.949 60.000 0.00 0.00 0.00 3.11
698 1019 0.032952 TCTTCCCACCGTCGTCAAAG 59.967 55.000 0.00 0.00 0.00 2.77
699 1020 0.682852 ATCTTCCCACCGTCGTCAAA 59.317 50.000 0.00 0.00 0.00 2.69
700 1021 1.548081 TATCTTCCCACCGTCGTCAA 58.452 50.000 0.00 0.00 0.00 3.18
701 1022 1.407618 CATATCTTCCCACCGTCGTCA 59.592 52.381 0.00 0.00 0.00 4.35
702 1023 1.407979 ACATATCTTCCCACCGTCGTC 59.592 52.381 0.00 0.00 0.00 4.20
703 1024 1.136305 CACATATCTTCCCACCGTCGT 59.864 52.381 0.00 0.00 0.00 4.34
704 1025 1.407618 TCACATATCTTCCCACCGTCG 59.592 52.381 0.00 0.00 0.00 5.12
705 1026 3.393800 CATCACATATCTTCCCACCGTC 58.606 50.000 0.00 0.00 0.00 4.79
706 1027 2.485479 GCATCACATATCTTCCCACCGT 60.485 50.000 0.00 0.00 0.00 4.83
707 1028 2.146342 GCATCACATATCTTCCCACCG 58.854 52.381 0.00 0.00 0.00 4.94
708 1029 3.498774 AGCATCACATATCTTCCCACC 57.501 47.619 0.00 0.00 0.00 4.61
709 1030 3.496130 CGAAGCATCACATATCTTCCCAC 59.504 47.826 0.00 0.00 33.32 4.61
710 1031 3.494924 CCGAAGCATCACATATCTTCCCA 60.495 47.826 0.00 0.00 33.32 4.37
711 1032 3.070018 CCGAAGCATCACATATCTTCCC 58.930 50.000 0.00 0.00 33.32 3.97
712 1033 3.070018 CCCGAAGCATCACATATCTTCC 58.930 50.000 0.00 0.00 33.32 3.46
713 1034 3.993081 CTCCCGAAGCATCACATATCTTC 59.007 47.826 0.00 0.00 33.50 2.87
714 1035 4.000331 CTCCCGAAGCATCACATATCTT 58.000 45.455 0.00 0.00 0.00 2.40
715 1036 3.674528 CTCCCGAAGCATCACATATCT 57.325 47.619 0.00 0.00 0.00 1.98
727 1048 1.153469 GGCTGAGAAGCTCCCGAAG 60.153 63.158 0.00 0.00 34.73 3.79
728 1049 2.982130 GGCTGAGAAGCTCCCGAA 59.018 61.111 0.00 0.00 34.73 4.30
729 1050 3.452786 CGGCTGAGAAGCTCCCGA 61.453 66.667 6.35 0.00 37.45 5.14
730 1051 3.302347 AACGGCTGAGAAGCTCCCG 62.302 63.158 0.00 9.55 39.80 5.14
731 1052 1.743252 CAACGGCTGAGAAGCTCCC 60.743 63.158 0.00 0.00 34.73 4.30
732 1053 1.743252 CCAACGGCTGAGAAGCTCC 60.743 63.158 0.00 0.00 34.73 4.70
733 1054 0.107945 ATCCAACGGCTGAGAAGCTC 60.108 55.000 0.00 0.00 34.73 4.09
734 1055 0.107945 GATCCAACGGCTGAGAAGCT 60.108 55.000 0.00 0.00 34.73 3.74
735 1056 0.107945 AGATCCAACGGCTGAGAAGC 60.108 55.000 0.00 0.00 0.00 3.86
736 1057 3.526931 TTAGATCCAACGGCTGAGAAG 57.473 47.619 0.00 0.00 0.00 2.85
737 1058 3.973206 TTTAGATCCAACGGCTGAGAA 57.027 42.857 0.00 0.00 0.00 2.87
738 1059 3.973206 TTTTAGATCCAACGGCTGAGA 57.027 42.857 0.00 0.00 0.00 3.27
739 1060 4.635765 TGAATTTTAGATCCAACGGCTGAG 59.364 41.667 0.00 0.00 0.00 3.35
740 1061 4.584874 TGAATTTTAGATCCAACGGCTGA 58.415 39.130 0.00 0.00 0.00 4.26
741 1062 4.963276 TGAATTTTAGATCCAACGGCTG 57.037 40.909 0.00 0.00 0.00 4.85
742 1063 5.105756 CCTTTGAATTTTAGATCCAACGGCT 60.106 40.000 0.00 0.00 0.00 5.52
743 1064 5.102313 CCTTTGAATTTTAGATCCAACGGC 58.898 41.667 0.00 0.00 0.00 5.68
744 1065 6.072175 TGACCTTTGAATTTTAGATCCAACGG 60.072 38.462 0.00 0.00 33.86 4.44
745 1066 6.908825 TGACCTTTGAATTTTAGATCCAACG 58.091 36.000 0.00 0.00 0.00 4.10
746 1067 8.576442 TCTTGACCTTTGAATTTTAGATCCAAC 58.424 33.333 0.00 0.00 0.00 3.77
747 1068 8.704849 TCTTGACCTTTGAATTTTAGATCCAA 57.295 30.769 0.00 0.00 0.00 3.53
748 1069 8.704849 TTCTTGACCTTTGAATTTTAGATCCA 57.295 30.769 0.00 0.00 0.00 3.41
749 1070 9.981114 TTTTCTTGACCTTTGAATTTTAGATCC 57.019 29.630 0.00 0.00 0.00 3.36
753 1074 8.972349 GCTCTTTTCTTGACCTTTGAATTTTAG 58.028 33.333 0.00 0.00 0.00 1.85
754 1075 8.695456 AGCTCTTTTCTTGACCTTTGAATTTTA 58.305 29.630 0.00 0.00 0.00 1.52
755 1076 7.559486 AGCTCTTTTCTTGACCTTTGAATTTT 58.441 30.769 0.00 0.00 0.00 1.82
756 1077 7.117285 AGCTCTTTTCTTGACCTTTGAATTT 57.883 32.000 0.00 0.00 0.00 1.82
757 1078 6.721704 AGCTCTTTTCTTGACCTTTGAATT 57.278 33.333 0.00 0.00 0.00 2.17
758 1079 6.510536 CAAGCTCTTTTCTTGACCTTTGAAT 58.489 36.000 0.00 0.00 42.52 2.57
759 1080 5.679638 GCAAGCTCTTTTCTTGACCTTTGAA 60.680 40.000 6.89 0.00 42.52 2.69
760 1081 4.202050 GCAAGCTCTTTTCTTGACCTTTGA 60.202 41.667 6.89 0.00 42.52 2.69
761 1082 4.047142 GCAAGCTCTTTTCTTGACCTTTG 58.953 43.478 6.89 0.00 42.52 2.77
762 1083 3.243201 CGCAAGCTCTTTTCTTGACCTTT 60.243 43.478 6.89 0.00 42.52 3.11
763 1084 2.291741 CGCAAGCTCTTTTCTTGACCTT 59.708 45.455 6.89 0.00 42.52 3.50
764 1085 1.876156 CGCAAGCTCTTTTCTTGACCT 59.124 47.619 6.89 0.00 42.52 3.85
765 1086 2.322371 CGCAAGCTCTTTTCTTGACC 57.678 50.000 6.89 0.00 42.52 4.02
796 1117 5.664294 AACGAACTTTTAGGGGTGTTTTT 57.336 34.783 0.00 0.00 0.00 1.94
797 1118 6.964807 ATAACGAACTTTTAGGGGTGTTTT 57.035 33.333 0.00 0.00 0.00 2.43
798 1119 6.964807 AATAACGAACTTTTAGGGGTGTTT 57.035 33.333 0.00 0.00 0.00 2.83
799 1120 6.997476 TGTAATAACGAACTTTTAGGGGTGTT 59.003 34.615 0.00 0.00 0.00 3.32
800 1121 6.532826 TGTAATAACGAACTTTTAGGGGTGT 58.467 36.000 0.00 0.00 0.00 4.16
801 1122 7.300320 GTTGTAATAACGAACTTTTAGGGGTG 58.700 38.462 0.00 0.00 0.00 4.61
802 1123 6.430925 GGTTGTAATAACGAACTTTTAGGGGT 59.569 38.462 0.00 0.00 0.00 4.95
803 1124 6.430616 TGGTTGTAATAACGAACTTTTAGGGG 59.569 38.462 0.00 0.00 0.00 4.79
804 1125 7.388500 TCTGGTTGTAATAACGAACTTTTAGGG 59.612 37.037 0.00 0.00 0.00 3.53
805 1126 8.314143 TCTGGTTGTAATAACGAACTTTTAGG 57.686 34.615 0.00 0.00 0.00 2.69
808 1129 8.842280 TGAATCTGGTTGTAATAACGAACTTTT 58.158 29.630 0.00 0.00 0.00 2.27
809 1130 8.385898 TGAATCTGGTTGTAATAACGAACTTT 57.614 30.769 0.00 0.00 0.00 2.66
810 1131 7.360946 GCTGAATCTGGTTGTAATAACGAACTT 60.361 37.037 0.00 0.00 0.00 2.66
811 1132 6.092259 GCTGAATCTGGTTGTAATAACGAACT 59.908 38.462 0.00 0.00 0.00 3.01
812 1133 6.248631 GCTGAATCTGGTTGTAATAACGAAC 58.751 40.000 0.00 0.00 0.00 3.95
813 1134 5.062934 CGCTGAATCTGGTTGTAATAACGAA 59.937 40.000 0.00 0.00 0.00 3.85
814 1135 4.565166 CGCTGAATCTGGTTGTAATAACGA 59.435 41.667 0.00 0.00 0.00 3.85
815 1136 4.328983 ACGCTGAATCTGGTTGTAATAACG 59.671 41.667 0.00 0.00 0.00 3.18
816 1137 5.796350 ACGCTGAATCTGGTTGTAATAAC 57.204 39.130 0.00 0.00 0.00 1.89
817 1138 7.225931 GGAATACGCTGAATCTGGTTGTAATAA 59.774 37.037 0.00 0.00 0.00 1.40
818 1139 6.704493 GGAATACGCTGAATCTGGTTGTAATA 59.296 38.462 0.00 0.00 0.00 0.98
819 1140 5.527582 GGAATACGCTGAATCTGGTTGTAAT 59.472 40.000 0.00 0.00 0.00 1.89
820 1141 4.873827 GGAATACGCTGAATCTGGTTGTAA 59.126 41.667 0.00 0.00 0.00 2.41
821 1142 4.161565 AGGAATACGCTGAATCTGGTTGTA 59.838 41.667 0.00 0.00 0.00 2.41
822 1143 3.055094 AGGAATACGCTGAATCTGGTTGT 60.055 43.478 0.00 0.00 0.00 3.32
823 1144 3.535561 AGGAATACGCTGAATCTGGTTG 58.464 45.455 0.00 0.00 0.00 3.77
824 1145 3.914426 AGGAATACGCTGAATCTGGTT 57.086 42.857 0.00 0.00 0.00 3.67
825 1146 6.437477 TCATATAGGAATACGCTGAATCTGGT 59.563 38.462 0.00 0.00 0.00 4.00
826 1147 6.754209 GTCATATAGGAATACGCTGAATCTGG 59.246 42.308 0.00 0.00 0.00 3.86
827 1148 6.754209 GGTCATATAGGAATACGCTGAATCTG 59.246 42.308 0.00 0.00 0.00 2.90
828 1149 6.404844 CGGTCATATAGGAATACGCTGAATCT 60.405 42.308 0.00 0.00 0.00 2.40
829 1150 5.744345 CGGTCATATAGGAATACGCTGAATC 59.256 44.000 0.00 0.00 0.00 2.52
830 1151 5.185249 ACGGTCATATAGGAATACGCTGAAT 59.815 40.000 7.13 0.00 0.00 2.57
831 1152 4.521639 ACGGTCATATAGGAATACGCTGAA 59.478 41.667 7.13 0.00 0.00 3.02
832 1153 4.077108 ACGGTCATATAGGAATACGCTGA 58.923 43.478 7.13 0.00 0.00 4.26
833 1154 4.082949 TGACGGTCATATAGGAATACGCTG 60.083 45.833 6.76 0.00 0.00 5.18
834 1155 4.077108 TGACGGTCATATAGGAATACGCT 58.923 43.478 6.76 0.00 0.00 5.07
835 1156 4.155462 TCTGACGGTCATATAGGAATACGC 59.845 45.833 11.86 2.86 0.00 4.42
836 1157 5.874895 TCTGACGGTCATATAGGAATACG 57.125 43.478 11.86 6.04 0.00 3.06
839 1160 9.922477 TCTATAATCTGACGGTCATATAGGAAT 57.078 33.333 23.81 11.38 0.00 3.01
840 1161 9.922477 ATCTATAATCTGACGGTCATATAGGAA 57.078 33.333 23.81 13.99 0.00 3.36
841 1162 9.562408 GATCTATAATCTGACGGTCATATAGGA 57.438 37.037 23.81 14.71 0.00 2.94
842 1163 8.788806 GGATCTATAATCTGACGGTCATATAGG 58.211 40.741 23.81 10.94 0.00 2.57
843 1164 9.343539 TGGATCTATAATCTGACGGTCATATAG 57.656 37.037 20.94 20.94 0.00 1.31
844 1165 9.695155 TTGGATCTATAATCTGACGGTCATATA 57.305 33.333 11.86 9.93 0.00 0.86
845 1166 8.470805 GTTGGATCTATAATCTGACGGTCATAT 58.529 37.037 11.86 7.25 0.00 1.78
846 1167 7.361799 CGTTGGATCTATAATCTGACGGTCATA 60.362 40.741 11.86 4.85 0.00 2.15
847 1168 6.570571 CGTTGGATCTATAATCTGACGGTCAT 60.571 42.308 11.86 0.00 0.00 3.06
848 1169 5.278315 CGTTGGATCTATAATCTGACGGTCA 60.278 44.000 10.88 10.88 0.00 4.02
849 1170 5.154932 CGTTGGATCTATAATCTGACGGTC 58.845 45.833 0.00 0.00 0.00 4.79
850 1171 4.022242 CCGTTGGATCTATAATCTGACGGT 60.022 45.833 16.94 0.00 39.34 4.83
851 1172 4.486090 CCGTTGGATCTATAATCTGACGG 58.514 47.826 13.82 13.82 38.73 4.79
852 1173 3.921021 GCCGTTGGATCTATAATCTGACG 59.079 47.826 0.00 0.00 0.00 4.35
853 1174 4.883083 TGCCGTTGGATCTATAATCTGAC 58.117 43.478 0.00 0.00 0.00 3.51
854 1175 5.297547 GTTGCCGTTGGATCTATAATCTGA 58.702 41.667 0.00 0.00 0.00 3.27
855 1176 4.452455 GGTTGCCGTTGGATCTATAATCTG 59.548 45.833 0.00 0.00 0.00 2.90
856 1177 4.348168 AGGTTGCCGTTGGATCTATAATCT 59.652 41.667 0.00 0.00 0.00 2.40
857 1178 4.642429 AGGTTGCCGTTGGATCTATAATC 58.358 43.478 0.00 0.00 0.00 1.75
858 1179 4.706842 AGGTTGCCGTTGGATCTATAAT 57.293 40.909 0.00 0.00 0.00 1.28
859 1180 4.039973 CCTAGGTTGCCGTTGGATCTATAA 59.960 45.833 0.00 0.00 0.00 0.98
860 1181 3.576982 CCTAGGTTGCCGTTGGATCTATA 59.423 47.826 0.00 0.00 0.00 1.31
861 1182 2.368875 CCTAGGTTGCCGTTGGATCTAT 59.631 50.000 0.00 0.00 0.00 1.98
862 1183 1.760613 CCTAGGTTGCCGTTGGATCTA 59.239 52.381 0.00 0.00 0.00 1.98
863 1184 0.541863 CCTAGGTTGCCGTTGGATCT 59.458 55.000 0.00 0.00 0.00 2.75
864 1185 0.252197 ACCTAGGTTGCCGTTGGATC 59.748 55.000 9.21 0.00 0.00 3.36
865 1186 0.035439 CACCTAGGTTGCCGTTGGAT 60.035 55.000 13.15 0.00 0.00 3.41
866 1187 1.373435 CACCTAGGTTGCCGTTGGA 59.627 57.895 13.15 0.00 0.00 3.53
867 1188 2.332654 GCACCTAGGTTGCCGTTGG 61.333 63.158 13.15 0.00 0.00 3.77
868 1189 1.298859 GAGCACCTAGGTTGCCGTTG 61.299 60.000 24.12 10.00 0.00 4.10
869 1190 1.003718 GAGCACCTAGGTTGCCGTT 60.004 57.895 24.12 8.91 0.00 4.44
870 1191 2.663196 GAGCACCTAGGTTGCCGT 59.337 61.111 24.12 12.75 0.00 5.68
871 1192 2.125106 GGAGCACCTAGGTTGCCG 60.125 66.667 24.12 11.52 0.00 5.69
872 1193 2.272471 GGGAGCACCTAGGTTGCC 59.728 66.667 24.12 17.48 35.85 4.52
873 1194 1.610554 TACGGGAGCACCTAGGTTGC 61.611 60.000 21.75 21.75 36.97 4.17
874 1195 0.460311 CTACGGGAGCACCTAGGTTG 59.540 60.000 13.15 9.30 36.97 3.77
875 1196 2.897699 CTACGGGAGCACCTAGGTT 58.102 57.895 13.15 0.00 36.97 3.50
876 1197 4.680487 CTACGGGAGCACCTAGGT 57.320 61.111 9.21 9.21 36.97 3.08
885 1206 0.966920 AATATCGGGTGCTACGGGAG 59.033 55.000 0.00 0.00 0.00 4.30
886 1207 1.416243 AAATATCGGGTGCTACGGGA 58.584 50.000 0.00 0.00 0.00 5.14
887 1208 2.140717 GAAAATATCGGGTGCTACGGG 58.859 52.381 0.00 0.00 0.00 5.28
888 1209 2.140717 GGAAAATATCGGGTGCTACGG 58.859 52.381 0.00 0.00 0.00 4.02
889 1210 2.140717 GGGAAAATATCGGGTGCTACG 58.859 52.381 0.00 0.00 0.00 3.51
890 1211 2.105993 AGGGGAAAATATCGGGTGCTAC 59.894 50.000 0.00 0.00 0.00 3.58
891 1212 2.370849 GAGGGGAAAATATCGGGTGCTA 59.629 50.000 0.00 0.00 0.00 3.49
892 1213 1.143073 GAGGGGAAAATATCGGGTGCT 59.857 52.381 0.00 0.00 0.00 4.40
893 1214 1.605753 GAGGGGAAAATATCGGGTGC 58.394 55.000 0.00 0.00 0.00 5.01
894 1215 1.774856 AGGAGGGGAAAATATCGGGTG 59.225 52.381 0.00 0.00 0.00 4.61
895 1216 2.207926 AGGAGGGGAAAATATCGGGT 57.792 50.000 0.00 0.00 0.00 5.28
896 1217 3.117663 TCAAAGGAGGGGAAAATATCGGG 60.118 47.826 0.00 0.00 0.00 5.14
897 1218 3.883489 GTCAAAGGAGGGGAAAATATCGG 59.117 47.826 0.00 0.00 0.00 4.18
898 1219 4.781934 AGTCAAAGGAGGGGAAAATATCG 58.218 43.478 0.00 0.00 0.00 2.92
899 1220 5.952347 ACAAGTCAAAGGAGGGGAAAATATC 59.048 40.000 0.00 0.00 0.00 1.63
900 1221 5.903923 ACAAGTCAAAGGAGGGGAAAATAT 58.096 37.500 0.00 0.00 0.00 1.28
901 1222 5.074515 AGACAAGTCAAAGGAGGGGAAAATA 59.925 40.000 2.72 0.00 0.00 1.40
902 1223 4.140924 AGACAAGTCAAAGGAGGGGAAAAT 60.141 41.667 2.72 0.00 0.00 1.82
903 1224 3.204382 AGACAAGTCAAAGGAGGGGAAAA 59.796 43.478 2.72 0.00 0.00 2.29
904 1225 2.783510 AGACAAGTCAAAGGAGGGGAAA 59.216 45.455 2.72 0.00 0.00 3.13
905 1226 2.418669 AGACAAGTCAAAGGAGGGGAA 58.581 47.619 2.72 0.00 0.00 3.97
906 1227 2.118403 AGACAAGTCAAAGGAGGGGA 57.882 50.000 2.72 0.00 0.00 4.81
907 1228 2.553247 GGAAGACAAGTCAAAGGAGGGG 60.553 54.545 2.72 0.00 0.00 4.79
908 1229 2.553247 GGGAAGACAAGTCAAAGGAGGG 60.553 54.545 2.72 0.00 0.00 4.30
909 1230 2.553247 GGGGAAGACAAGTCAAAGGAGG 60.553 54.545 2.72 0.00 0.00 4.30
953 1282 1.205064 CGCTGCTTTCTCGGTGTTG 59.795 57.895 0.00 0.00 0.00 3.33
1132 1473 0.894184 ACGCAGACGGAGAGGAAGAA 60.894 55.000 0.00 0.00 46.04 2.52
1151 1492 1.078324 ACCCTAGTTTCTTCCCGAGGA 59.922 52.381 0.00 0.00 0.00 3.71
1156 1500 2.843081 ACCCTACCCTAGTTTCTTCCC 58.157 52.381 0.00 0.00 0.00 3.97
1176 1520 2.379972 CTCTCTCCGCTTTTCCTCCTA 58.620 52.381 0.00 0.00 0.00 2.94
1299 1643 4.078516 AAGTGTAGACGGGCGGGC 62.079 66.667 0.00 0.00 0.00 6.13
1300 1644 2.183555 GAAGTGTAGACGGGCGGG 59.816 66.667 0.00 0.00 0.00 6.13
1301 1645 2.183555 GGAAGTGTAGACGGGCGG 59.816 66.667 0.00 0.00 0.00 6.13
1304 1648 0.535797 GGAAGGGAAGTGTAGACGGG 59.464 60.000 0.00 0.00 0.00 5.28
1324 1668 4.161333 CGCTTGCATTTCAAAGGAACTAG 58.839 43.478 0.00 0.00 38.49 2.57
1336 1704 4.424566 CTGGCGGCGCTTGCATTT 62.425 61.111 32.30 0.00 41.71 2.32
1432 1809 6.708949 TCGAGGCCCAATTGAATTAATAGTAC 59.291 38.462 7.12 0.00 0.00 2.73
1548 1991 7.307337 CCAAATCTTGCCATGTTTTTGAAGTAC 60.307 37.037 0.00 0.00 0.00 2.73
1693 2232 6.514212 CGAACTAACCAATGTGAATGAACCAA 60.514 38.462 0.00 0.00 0.00 3.67
1695 2234 5.390613 CGAACTAACCAATGTGAATGAACC 58.609 41.667 0.00 0.00 0.00 3.62
1696 2235 5.390613 CCGAACTAACCAATGTGAATGAAC 58.609 41.667 0.00 0.00 0.00 3.18
1698 2237 4.006989 CCCGAACTAACCAATGTGAATGA 58.993 43.478 0.00 0.00 0.00 2.57
1701 2240 2.372504 TCCCCGAACTAACCAATGTGAA 59.627 45.455 0.00 0.00 0.00 3.18
1702 2241 1.979308 TCCCCGAACTAACCAATGTGA 59.021 47.619 0.00 0.00 0.00 3.58
1703 2242 2.483014 TCCCCGAACTAACCAATGTG 57.517 50.000 0.00 0.00 0.00 3.21
1760 2314 3.385433 TGATTTCATGGGAATGGCATGTC 59.615 43.478 0.00 0.82 31.93 3.06
1762 2316 4.409718 TTGATTTCATGGGAATGGCATG 57.590 40.909 0.00 0.00 31.93 4.06
1911 2466 5.510674 CGATAGCAGAAGTTGAAAAATGCAG 59.489 40.000 0.00 0.00 36.15 4.41
1921 2476 5.826586 ACTGACTATCGATAGCAGAAGTTG 58.173 41.667 36.46 23.17 37.65 3.16
1922 2477 5.590663 TGACTGACTATCGATAGCAGAAGTT 59.409 40.000 36.46 25.27 37.65 2.66
1988 2548 8.283291 AGACACGTTTGAATTTTCTATCAGTTC 58.717 33.333 0.00 0.00 0.00 3.01
2008 2568 0.110056 GTTGGCAGCATTGAGACACG 60.110 55.000 0.00 0.00 0.00 4.49
2041 2601 2.982488 AGAACTCAGTCATTCCCCTGTT 59.018 45.455 0.00 0.00 0.00 3.16
2263 2827 0.250124 TTGCCGCGAGAAGGAGAAAA 60.250 50.000 8.23 0.00 0.00 2.29
2443 3007 1.061546 TGGGGAGTTGGTTCCAGTAC 58.938 55.000 0.00 0.00 39.09 2.73
2557 3124 4.621747 CGAAGTAGCACCCTGATCTTCTTT 60.622 45.833 0.00 0.00 32.10 2.52
2558 3125 3.118956 CGAAGTAGCACCCTGATCTTCTT 60.119 47.826 0.00 0.00 32.10 2.52
2559 3126 2.428890 CGAAGTAGCACCCTGATCTTCT 59.571 50.000 0.00 0.00 32.10 2.85
2600 3167 4.335416 TCCTGCAATCCTCCTTAACAAAG 58.665 43.478 0.00 0.00 0.00 2.77
2717 3284 8.947055 AGCAATCAAACAGTTCAAACTTAAAT 57.053 26.923 0.00 0.00 37.08 1.40
2883 3450 5.600908 CCAATGTTGGCAAGAAAAATGAG 57.399 39.130 0.00 0.00 42.21 2.90
2944 3511 5.773176 ACACCCTACCAAATTTTTGACTAGG 59.227 40.000 4.63 10.66 40.55 3.02
2949 3516 7.418025 CCAAAGTACACCCTACCAAATTTTTGA 60.418 37.037 4.63 0.00 40.55 2.69
3066 3633 2.292267 CAAGTTAGCAAGATCCGGCAT 58.708 47.619 0.00 0.00 0.00 4.40
3086 3653 3.374745 CATCTGGTCTGTTTTTGTGTGC 58.625 45.455 0.00 0.00 0.00 4.57
3100 3667 3.473113 AATAAACCAAGCCCATCTGGT 57.527 42.857 0.00 0.00 36.04 4.00
3296 3865 8.598075 GCAAAAGAAATCAGGTATGCAAATTAG 58.402 33.333 0.00 0.00 33.00 1.73
3737 4306 4.392940 AGATGAAAAGAGGAACACACTGG 58.607 43.478 0.00 0.00 0.00 4.00
4044 4614 3.055530 TGTTTGCTCTCTCATCTTCCTCC 60.056 47.826 0.00 0.00 0.00 4.30
4167 4737 5.862678 TCACCAATATTACCTGATCGACA 57.137 39.130 0.00 0.00 0.00 4.35
4170 4740 8.620416 TCAAAATTCACCAATATTACCTGATCG 58.380 33.333 0.00 0.00 0.00 3.69
4393 4972 3.593834 CCTCTTGGCTTTGTTTGGC 57.406 52.632 0.00 0.00 0.00 4.52
4618 5197 0.883833 CAAGCTTGTGGATGTGGACC 59.116 55.000 18.65 0.00 0.00 4.46
4682 5261 3.466881 GGTTGGAAAACCAGGCCC 58.533 61.111 0.00 0.00 42.38 5.80
4696 5275 2.781158 GGTTGTTGCCTGCGTGGTT 61.781 57.895 0.00 0.00 38.35 3.67
4711 5290 2.829120 CCGGAACATTATTGGGTTGGTT 59.171 45.455 0.00 0.00 0.00 3.67
4712 5291 2.225167 ACCGGAACATTATTGGGTTGGT 60.225 45.455 9.46 0.00 0.00 3.67
4713 5292 2.425668 GACCGGAACATTATTGGGTTGG 59.574 50.000 9.46 0.00 0.00 3.77
4733 5312 1.141019 GAGCGTAGGATGTTGCCGA 59.859 57.895 0.00 0.00 0.00 5.54
4735 5314 2.526120 GCGAGCGTAGGATGTTGCC 61.526 63.158 0.00 0.00 0.00 4.52
4761 5340 1.674817 CCCAAACAACCGACGCTCTAT 60.675 52.381 0.00 0.00 0.00 1.98
4762 5341 0.320073 CCCAAACAACCGACGCTCTA 60.320 55.000 0.00 0.00 0.00 2.43
4919 5510 1.202698 AGATGGTAATGCCGAGGAAGC 60.203 52.381 0.00 0.00 41.21 3.86
4948 5539 2.513738 AGAGTAGGCCAGTCTCTCAGAT 59.486 50.000 5.01 0.00 33.98 2.90
5185 5776 0.736636 TCGCTGTCATCCGTAATCGT 59.263 50.000 0.00 0.00 35.01 3.73
5314 5905 4.731313 AATGATCCCCCTTTCATACTCC 57.269 45.455 0.00 0.00 32.40 3.85
5315 5906 6.712547 CAGTAAATGATCCCCCTTTCATACTC 59.287 42.308 0.00 0.00 32.40 2.59
5316 5907 6.160459 ACAGTAAATGATCCCCCTTTCATACT 59.840 38.462 0.00 0.00 32.40 2.12
5317 5908 6.365520 ACAGTAAATGATCCCCCTTTCATAC 58.634 40.000 0.00 0.00 32.40 2.39
5318 5909 6.159575 TGACAGTAAATGATCCCCCTTTCATA 59.840 38.462 0.00 0.00 32.40 2.15
5319 5910 5.044179 TGACAGTAAATGATCCCCCTTTCAT 60.044 40.000 0.00 0.00 34.08 2.57
5320 5911 4.290985 TGACAGTAAATGATCCCCCTTTCA 59.709 41.667 0.00 0.00 0.00 2.69
5321 5912 4.855340 TGACAGTAAATGATCCCCCTTTC 58.145 43.478 0.00 0.00 0.00 2.62
5322 5913 4.946160 TGACAGTAAATGATCCCCCTTT 57.054 40.909 0.00 0.00 0.00 3.11
5323 5914 4.292306 ACTTGACAGTAAATGATCCCCCTT 59.708 41.667 0.00 0.00 0.00 3.95
5324 5915 3.852578 ACTTGACAGTAAATGATCCCCCT 59.147 43.478 0.00 0.00 0.00 4.79
5325 5916 4.200092 GACTTGACAGTAAATGATCCCCC 58.800 47.826 0.00 0.00 31.22 5.40
5347 5938 8.642908 AATGTTATGTTCAATTCAGATGCATG 57.357 30.769 2.46 0.00 0.00 4.06
5363 5954 7.391833 GGGTCTTCTGAGAAAGAAATGTTATGT 59.608 37.037 0.00 0.00 44.38 2.29
5405 5996 2.979813 CTGCTTTTGTTTCCCGATTTCG 59.020 45.455 0.00 0.00 39.44 3.46
5467 6058 1.523758 CTACTCCCAAGCACCACAAC 58.476 55.000 0.00 0.00 0.00 3.32
5478 6069 3.306502 CCTGTTAAACGAAGCTACTCCCA 60.307 47.826 0.00 0.00 0.00 4.37
5480 6071 4.184079 TCCTGTTAAACGAAGCTACTCC 57.816 45.455 0.00 0.00 0.00 3.85
5481 6072 6.723131 ATTTCCTGTTAAACGAAGCTACTC 57.277 37.500 0.00 0.00 0.00 2.59
5482 6073 8.611654 TTAATTTCCTGTTAAACGAAGCTACT 57.388 30.769 0.00 0.00 0.00 2.57
5723 8472 3.561120 TTGTCTGCGCCGGGGAAAT 62.561 57.895 24.68 0.00 0.00 2.17
5724 8473 3.776347 TTTGTCTGCGCCGGGGAAA 62.776 57.895 24.68 10.47 0.00 3.13
5773 8524 1.584724 GGAGGGGAAATGAGAGGTGA 58.415 55.000 0.00 0.00 0.00 4.02
5774 8525 0.179000 CGGAGGGGAAATGAGAGGTG 59.821 60.000 0.00 0.00 0.00 4.00
5788 8539 1.519455 GATGCGACCAGAACGGAGG 60.519 63.158 0.00 0.00 38.63 4.30
5798 8549 1.323271 TGGACAGAGAGGATGCGACC 61.323 60.000 0.00 0.00 0.00 4.79
5800 8551 1.035923 GATGGACAGAGAGGATGCGA 58.964 55.000 0.00 0.00 0.00 5.10
5931 8684 5.376756 AGGCCGACTGGGTAATATTTAAA 57.623 39.130 0.00 0.00 38.44 1.52
5964 8717 1.141053 GTAGGCCGACTGGATCCAATT 59.859 52.381 17.00 5.47 37.49 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.