Multiple sequence alignment - TraesCS7D01G276900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G276900 chr7D 100.000 2568 0 0 1 2568 265252639 265255206 0.000000e+00 4743.0
1 TraesCS7D01G276900 chr2D 95.199 604 18 2 1963 2566 21065721 21065129 0.000000e+00 944.0
2 TraesCS7D01G276900 chr6A 93.408 622 26 4 1962 2568 592565095 592564474 0.000000e+00 907.0
3 TraesCS7D01G276900 chr6A 85.088 228 34 0 2334 2561 124304828 124305055 1.540000e-57 233.0
4 TraesCS7D01G276900 chr7B 92.347 588 23 10 1320 1895 245663020 245663597 0.000000e+00 817.0
5 TraesCS7D01G276900 chr7B 91.815 281 16 1 736 1009 245660473 245660753 4.010000e-103 385.0
6 TraesCS7D01G276900 chr7B 95.169 207 10 0 1046 1252 245660754 245660960 6.850000e-86 327.0
7 TraesCS7D01G276900 chr7B 83.621 116 12 5 625 738 118227786 118227896 4.520000e-18 102.0
8 TraesCS7D01G276900 chr7B 100.000 35 0 0 1892 1926 245663799 245663833 5.930000e-07 65.8
9 TraesCS7D01G276900 chr7A 95.164 517 24 1 736 1252 290278812 290279327 0.000000e+00 815.0
10 TraesCS7D01G276900 chr7A 86.994 692 40 18 1260 1911 290279645 290280326 0.000000e+00 734.0
11 TraesCS7D01G276900 chr7A 85.316 395 55 3 1964 2356 449699206 449699599 3.080000e-109 405.0
12 TraesCS7D01G276900 chr7A 88.618 246 21 1 1 239 290278379 290278624 2.500000e-75 292.0
13 TraesCS7D01G276900 chr7A 88.542 96 3 4 330 425 290278728 290278815 2.700000e-20 110.0
14 TraesCS7D01G276900 chr3B 93.931 379 15 3 2190 2568 28819668 28820038 1.330000e-157 566.0
15 TraesCS7D01G276900 chr3B 83.186 113 14 3 625 736 650661902 650662010 5.850000e-17 99.0
16 TraesCS7D01G276900 chr6D 82.673 606 80 18 1963 2559 433649539 433650128 4.900000e-142 514.0
17 TraesCS7D01G276900 chr6D 96.930 228 7 0 431 658 431933127 431932900 1.440000e-102 383.0
18 TraesCS7D01G276900 chr6D 94.000 250 10 2 431 675 286637395 286637644 8.680000e-100 374.0
19 TraesCS7D01G276900 chr4B 87.298 433 46 6 1963 2394 19857913 19858337 1.070000e-133 486.0
20 TraesCS7D01G276900 chr4D 81.653 605 86 16 1961 2557 35069572 35070159 1.790000e-131 479.0
21 TraesCS7D01G276900 chr2B 80.914 613 101 11 1962 2568 569519068 569518466 1.080000e-128 470.0
22 TraesCS7D01G276900 chr2B 86.266 233 31 1 1963 2195 55621958 55621727 4.240000e-63 252.0
23 TraesCS7D01G276900 chr2B 83.929 112 11 5 625 734 728613215 728613321 1.630000e-17 100.0
24 TraesCS7D01G276900 chrUn 87.200 375 40 5 2020 2394 261043900 261043534 1.100000e-113 420.0
25 TraesCS7D01G276900 chr3D 97.807 228 5 0 431 658 287051185 287050958 6.660000e-106 394.0
26 TraesCS7D01G276900 chr3D 99.083 218 2 0 432 649 47242330 47242547 2.400000e-105 392.0
27 TraesCS7D01G276900 chr3D 97.797 227 5 0 432 658 449338363 449338589 2.400000e-105 392.0
28 TraesCS7D01G276900 chr3D 97.357 227 6 0 432 658 313910157 313910383 1.110000e-103 387.0
29 TraesCS7D01G276900 chr3D 96.930 228 7 0 431 658 380952584 380952357 1.440000e-102 383.0
30 TraesCS7D01G276900 chr5D 97.357 227 6 0 432 658 480474766 480474992 1.110000e-103 387.0
31 TraesCS7D01G276900 chr5D 96.137 233 9 0 443 675 159294487 159294719 5.180000e-102 381.0
32 TraesCS7D01G276900 chr1A 89.787 235 15 4 990 1224 25545461 25545686 2.500000e-75 292.0
33 TraesCS7D01G276900 chr1A 80.456 307 44 9 32 328 583331681 583331981 1.200000e-53 220.0
34 TraesCS7D01G276900 chr1D 82.558 344 32 17 899 1224 24539276 24539609 7.000000e-71 278.0
35 TraesCS7D01G276900 chr1B 88.186 237 19 4 991 1227 39854142 39854369 9.050000e-70 274.0
36 TraesCS7D01G276900 chr5B 93.846 65 4 0 672 736 289738156 289738220 5.850000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G276900 chr7D 265252639 265255206 2567 False 4743.00 4743 100.00000 1 2568 1 chr7D.!!$F1 2567
1 TraesCS7D01G276900 chr2D 21065129 21065721 592 True 944.00 944 95.19900 1963 2566 1 chr2D.!!$R1 603
2 TraesCS7D01G276900 chr6A 592564474 592565095 621 True 907.00 907 93.40800 1962 2568 1 chr6A.!!$R1 606
3 TraesCS7D01G276900 chr7B 245660473 245663833 3360 False 398.70 817 94.83275 736 1926 4 chr7B.!!$F2 1190
4 TraesCS7D01G276900 chr7A 290278379 290280326 1947 False 487.75 815 89.82950 1 1911 4 chr7A.!!$F2 1910
5 TraesCS7D01G276900 chr6D 433649539 433650128 589 False 514.00 514 82.67300 1963 2559 1 chr6D.!!$F2 596
6 TraesCS7D01G276900 chr4D 35069572 35070159 587 False 479.00 479 81.65300 1961 2557 1 chr4D.!!$F1 596
7 TraesCS7D01G276900 chr2B 569518466 569519068 602 True 470.00 470 80.91400 1962 2568 1 chr2B.!!$R2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 563 0.030235 GACCTTTTTGTGTGACGCCC 59.97 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 4215 0.041576 CGATACAGATCCGCGTTCGA 60.042 55.0 4.92 0.0 38.1 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.436242 TGTCCTAAGAAGTAACTCGCAG 57.564 45.455 0.00 0.00 0.00 5.18
89 90 9.575783 TTTTTAAGTTTTAAGCATTCTTGACGT 57.424 25.926 0.00 0.00 33.85 4.34
95 103 1.702886 AGCATTCTTGACGTGACTCG 58.297 50.000 0.00 0.00 46.00 4.18
121 129 2.125713 TGTGTCATGTAGCGGCCG 60.126 61.111 24.05 24.05 0.00 6.13
131 139 2.556459 TAGCGGCCGAGCTCATCTC 61.556 63.158 33.48 7.54 45.67 2.75
132 140 4.959596 GCGGCCGAGCTCATCTCC 62.960 72.222 33.48 2.06 38.62 3.71
136 144 1.227497 GCCGAGCTCATCTCCTTGG 60.227 63.158 15.40 5.07 38.62 3.61
137 145 1.680522 GCCGAGCTCATCTCCTTGGA 61.681 60.000 15.40 0.00 38.62 3.53
142 150 3.681034 CGAGCTCATCTCCTTGGAATTGT 60.681 47.826 15.40 0.00 38.62 2.71
148 156 5.188434 TCATCTCCTTGGAATTGTCATGTC 58.812 41.667 0.00 0.00 0.00 3.06
184 192 3.074594 GGTGAATACCGCGGTCAAT 57.925 52.632 38.01 22.04 37.19 2.57
188 196 1.206132 TGAATACCGCGGTCAATGTCT 59.794 47.619 38.01 10.48 0.00 3.41
193 201 1.133253 CGCGGTCAATGTCTGCAAG 59.867 57.895 11.44 0.00 37.06 4.01
216 224 4.805609 GCATGGGAAGGAGGATAAGCTAAG 60.806 50.000 0.00 0.00 0.00 2.18
222 230 5.452636 GGAAGGAGGATAAGCTAAGACACTG 60.453 48.000 0.00 0.00 0.00 3.66
223 231 4.615513 AGGAGGATAAGCTAAGACACTGT 58.384 43.478 0.00 0.00 0.00 3.55
224 232 4.404073 AGGAGGATAAGCTAAGACACTGTG 59.596 45.833 6.19 6.19 0.00 3.66
232 240 1.271379 CTAAGACACTGTGGTGCGGTA 59.729 52.381 13.09 0.00 46.57 4.02
239 247 2.930040 CACTGTGGTGCGGTATAGAAAG 59.070 50.000 0.00 0.00 36.61 2.62
242 250 2.167693 TGTGGTGCGGTATAGAAAGAGG 59.832 50.000 0.00 0.00 0.00 3.69
243 251 1.138266 TGGTGCGGTATAGAAAGAGGC 59.862 52.381 0.00 0.00 0.00 4.70
245 253 1.108776 TGCGGTATAGAAAGAGGCGT 58.891 50.000 0.00 0.00 0.00 5.68
246 254 2.033801 GTGCGGTATAGAAAGAGGCGTA 59.966 50.000 0.00 0.00 0.00 4.42
248 256 2.551459 GCGGTATAGAAAGAGGCGTAGA 59.449 50.000 0.00 0.00 0.00 2.59
249 257 3.608941 GCGGTATAGAAAGAGGCGTAGAC 60.609 52.174 0.00 0.00 0.00 2.59
250 258 3.562973 CGGTATAGAAAGAGGCGTAGACA 59.437 47.826 0.00 0.00 39.87 3.41
251 259 4.554330 CGGTATAGAAAGAGGCGTAGACAC 60.554 50.000 0.00 0.00 39.87 3.67
252 260 4.337555 GGTATAGAAAGAGGCGTAGACACA 59.662 45.833 0.00 0.00 39.87 3.72
253 261 5.009811 GGTATAGAAAGAGGCGTAGACACAT 59.990 44.000 0.00 0.00 39.87 3.21
254 262 3.238108 AGAAAGAGGCGTAGACACATG 57.762 47.619 0.00 0.00 39.87 3.21
255 263 2.826128 AGAAAGAGGCGTAGACACATGA 59.174 45.455 0.00 0.00 39.87 3.07
256 264 3.258372 AGAAAGAGGCGTAGACACATGAA 59.742 43.478 0.00 0.00 39.87 2.57
257 265 2.949451 AGAGGCGTAGACACATGAAG 57.051 50.000 0.00 0.00 39.87 3.02
258 266 2.447443 AGAGGCGTAGACACATGAAGA 58.553 47.619 0.00 0.00 39.87 2.87
259 267 2.425312 AGAGGCGTAGACACATGAAGAG 59.575 50.000 0.00 0.00 39.87 2.85
260 268 1.478510 AGGCGTAGACACATGAAGAGG 59.521 52.381 0.00 0.00 39.87 3.69
261 269 1.204941 GGCGTAGACACATGAAGAGGT 59.795 52.381 0.00 0.00 31.66 3.85
292 300 5.473846 TGAGCAATACGTTTTTGGGTTATGA 59.526 36.000 11.46 0.00 0.00 2.15
299 307 3.305064 CGTTTTTGGGTTATGAGGGTGTG 60.305 47.826 0.00 0.00 0.00 3.82
302 310 4.396357 TTTGGGTTATGAGGGTGTGATT 57.604 40.909 0.00 0.00 0.00 2.57
341 377 2.322161 ACGTACGACCGTGAAAATGAG 58.678 47.619 24.41 0.00 40.08 2.90
345 381 1.790623 ACGACCGTGAAAATGAGAACG 59.209 47.619 0.00 0.00 35.85 3.95
351 387 3.308866 CCGTGAAAATGAGAACGTATCCC 59.691 47.826 0.00 0.00 34.30 3.85
363 399 1.254026 CGTATCCCCTTATCTCGCCA 58.746 55.000 0.00 0.00 0.00 5.69
369 405 2.419198 CTTATCTCGCCAGCCGCT 59.581 61.111 0.00 0.00 36.73 5.52
370 406 1.663074 CTTATCTCGCCAGCCGCTC 60.663 63.158 0.00 0.00 36.73 5.03
371 407 2.081425 CTTATCTCGCCAGCCGCTCT 62.081 60.000 0.00 0.00 36.73 4.09
372 408 2.355445 TTATCTCGCCAGCCGCTCTG 62.355 60.000 0.00 0.00 42.49 3.35
423 459 4.899239 CGCCTCCCATGACCGCTC 62.899 72.222 0.00 0.00 0.00 5.03
424 460 4.554036 GCCTCCCATGACCGCTCC 62.554 72.222 0.00 0.00 0.00 4.70
425 461 3.083349 CCTCCCATGACCGCTCCA 61.083 66.667 0.00 0.00 0.00 3.86
426 462 2.503061 CTCCCATGACCGCTCCAG 59.497 66.667 0.00 0.00 0.00 3.86
427 463 2.038813 TCCCATGACCGCTCCAGA 59.961 61.111 0.00 0.00 0.00 3.86
428 464 1.383109 TCCCATGACCGCTCCAGAT 60.383 57.895 0.00 0.00 0.00 2.90
429 465 1.070445 CCCATGACCGCTCCAGATC 59.930 63.158 0.00 0.00 0.00 2.75
430 466 1.406065 CCCATGACCGCTCCAGATCT 61.406 60.000 0.00 0.00 0.00 2.75
431 467 0.249784 CCATGACCGCTCCAGATCTG 60.250 60.000 16.24 16.24 0.00 2.90
458 494 6.642707 AATTTGACAAATTTGACCTACGGA 57.357 33.333 24.64 0.00 37.84 4.69
459 495 5.427036 TTTGACAAATTTGACCTACGGAC 57.573 39.130 24.64 5.11 0.00 4.79
460 496 3.061322 TGACAAATTTGACCTACGGACG 58.939 45.455 24.64 0.00 0.00 4.79
461 497 3.243805 TGACAAATTTGACCTACGGACGA 60.244 43.478 24.64 0.00 0.00 4.20
462 498 3.731089 ACAAATTTGACCTACGGACGAA 58.269 40.909 24.64 0.00 0.00 3.85
463 499 4.128643 ACAAATTTGACCTACGGACGAAA 58.871 39.130 24.64 0.00 0.00 3.46
464 500 4.758165 ACAAATTTGACCTACGGACGAAAT 59.242 37.500 24.64 0.00 0.00 2.17
465 501 5.106830 ACAAATTTGACCTACGGACGAAATC 60.107 40.000 24.64 0.00 0.00 2.17
466 502 3.663995 TTTGACCTACGGACGAAATCA 57.336 42.857 0.00 0.00 0.00 2.57
467 503 3.663995 TTGACCTACGGACGAAATCAA 57.336 42.857 0.00 0.61 0.00 2.57
468 504 3.663995 TGACCTACGGACGAAATCAAA 57.336 42.857 0.00 0.00 0.00 2.69
469 505 4.196626 TGACCTACGGACGAAATCAAAT 57.803 40.909 0.00 0.00 0.00 2.32
470 506 4.178540 TGACCTACGGACGAAATCAAATC 58.821 43.478 0.00 0.00 0.00 2.17
471 507 4.178540 GACCTACGGACGAAATCAAATCA 58.821 43.478 0.00 0.00 0.00 2.57
472 508 3.930848 ACCTACGGACGAAATCAAATCAC 59.069 43.478 0.00 0.00 0.00 3.06
473 509 3.930229 CCTACGGACGAAATCAAATCACA 59.070 43.478 0.00 0.00 0.00 3.58
474 510 4.390603 CCTACGGACGAAATCAAATCACAA 59.609 41.667 0.00 0.00 0.00 3.33
475 511 4.822036 ACGGACGAAATCAAATCACAAA 57.178 36.364 0.00 0.00 0.00 2.83
476 512 5.176407 ACGGACGAAATCAAATCACAAAA 57.824 34.783 0.00 0.00 0.00 2.44
477 513 5.768317 ACGGACGAAATCAAATCACAAAAT 58.232 33.333 0.00 0.00 0.00 1.82
478 514 5.629020 ACGGACGAAATCAAATCACAAAATG 59.371 36.000 0.00 0.00 0.00 2.32
479 515 5.855925 CGGACGAAATCAAATCACAAAATGA 59.144 36.000 0.00 0.00 43.13 2.57
480 516 6.362016 CGGACGAAATCAAATCACAAAATGAA 59.638 34.615 0.00 0.00 41.93 2.57
481 517 7.501515 GGACGAAATCAAATCACAAAATGAAC 58.498 34.615 0.00 0.00 41.93 3.18
482 518 7.382218 GGACGAAATCAAATCACAAAATGAACT 59.618 33.333 0.00 0.00 41.93 3.01
483 519 8.064447 ACGAAATCAAATCACAAAATGAACTG 57.936 30.769 0.00 0.00 41.93 3.16
484 520 7.706179 ACGAAATCAAATCACAAAATGAACTGT 59.294 29.630 0.00 0.00 41.93 3.55
485 521 8.209869 CGAAATCAAATCACAAAATGAACTGTC 58.790 33.333 0.00 0.00 41.93 3.51
486 522 7.951530 AATCAAATCACAAAATGAACTGTCC 57.048 32.000 0.00 0.00 41.93 4.02
487 523 5.518812 TCAAATCACAAAATGAACTGTCCG 58.481 37.500 0.00 0.00 41.93 4.79
488 524 5.067153 TCAAATCACAAAATGAACTGTCCGT 59.933 36.000 0.00 0.00 41.93 4.69
489 525 3.961477 TCACAAAATGAACTGTCCGTG 57.039 42.857 0.00 0.00 33.02 4.94
490 526 3.536570 TCACAAAATGAACTGTCCGTGA 58.463 40.909 0.00 0.00 33.02 4.35
491 527 3.942115 TCACAAAATGAACTGTCCGTGAA 59.058 39.130 0.00 0.00 33.02 3.18
492 528 4.396478 TCACAAAATGAACTGTCCGTGAAA 59.604 37.500 0.00 0.00 33.02 2.69
493 529 4.499040 CACAAAATGAACTGTCCGTGAAAC 59.501 41.667 0.00 0.00 0.00 2.78
494 530 4.398044 ACAAAATGAACTGTCCGTGAAACT 59.602 37.500 0.00 0.00 31.75 2.66
495 531 5.587043 ACAAAATGAACTGTCCGTGAAACTA 59.413 36.000 0.00 0.00 31.75 2.24
496 532 6.262273 ACAAAATGAACTGTCCGTGAAACTAT 59.738 34.615 0.00 0.00 31.75 2.12
497 533 6.877611 AAATGAACTGTCCGTGAAACTATT 57.122 33.333 0.00 0.00 31.75 1.73
498 534 6.877611 AATGAACTGTCCGTGAAACTATTT 57.122 33.333 0.00 0.00 31.75 1.40
499 535 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
500 536 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
507 543 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
508 544 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
509 545 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
510 546 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
511 547 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
512 548 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
513 549 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
514 550 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
515 551 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
516 552 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
517 553 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
518 554 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
519 555 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
520 556 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
521 557 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
522 558 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
523 559 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
524 560 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
525 561 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
526 562 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
527 563 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
528 564 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
529 565 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
530 566 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
531 567 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
532 568 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
533 569 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
534 570 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
535 571 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
536 572 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
537 573 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
545 581 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
546 582 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
547 583 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
548 584 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
549 585 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
550 586 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
551 587 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
552 588 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
553 589 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
554 590 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
555 591 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
556 592 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
557 593 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
558 594 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
559 595 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
560 596 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
561 597 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
562 598 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
563 599 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
564 600 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
565 601 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
566 602 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
568 604 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
569 605 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
570 606 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
571 607 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
572 608 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
578 614 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
579 615 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
580 616 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
582 618 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
606 642 4.429212 TCGCACCCGTGTGATCCG 62.429 66.667 0.90 0.00 45.76 4.18
607 643 4.429212 CGCACCCGTGTGATCCGA 62.429 66.667 0.90 0.00 45.76 4.55
608 644 2.047655 GCACCCGTGTGATCCGAA 60.048 61.111 0.90 0.00 45.76 4.30
609 645 1.669760 GCACCCGTGTGATCCGAAA 60.670 57.895 0.90 0.00 45.76 3.46
610 646 1.231958 GCACCCGTGTGATCCGAAAA 61.232 55.000 0.90 0.00 45.76 2.29
611 647 1.448985 CACCCGTGTGATCCGAAAAT 58.551 50.000 0.00 0.00 45.76 1.82
612 648 1.810151 CACCCGTGTGATCCGAAAATT 59.190 47.619 0.00 0.00 45.76 1.82
613 649 3.004171 CACCCGTGTGATCCGAAAATTA 58.996 45.455 0.00 0.00 45.76 1.40
614 650 3.004862 ACCCGTGTGATCCGAAAATTAC 58.995 45.455 0.00 0.00 0.00 1.89
615 651 3.267483 CCCGTGTGATCCGAAAATTACT 58.733 45.455 0.00 0.00 0.00 2.24
616 652 4.081531 ACCCGTGTGATCCGAAAATTACTA 60.082 41.667 0.00 0.00 0.00 1.82
617 653 4.871557 CCCGTGTGATCCGAAAATTACTAA 59.128 41.667 0.00 0.00 0.00 2.24
618 654 5.006358 CCCGTGTGATCCGAAAATTACTAAG 59.994 44.000 0.00 0.00 0.00 2.18
619 655 5.579511 CCGTGTGATCCGAAAATTACTAAGT 59.420 40.000 0.00 0.00 0.00 2.24
620 656 6.237755 CCGTGTGATCCGAAAATTACTAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
621 657 6.309494 CGTGTGATCCGAAAATTACTAAGTCA 59.691 38.462 0.00 0.00 0.00 3.41
622 658 7.462856 CGTGTGATCCGAAAATTACTAAGTCAG 60.463 40.741 0.00 0.00 0.00 3.51
623 659 7.331193 GTGTGATCCGAAAATTACTAAGTCAGT 59.669 37.037 0.00 0.00 41.62 3.41
624 660 7.330946 TGTGATCCGAAAATTACTAAGTCAGTG 59.669 37.037 0.00 0.00 38.24 3.66
625 661 7.331193 GTGATCCGAAAATTACTAAGTCAGTGT 59.669 37.037 0.00 0.00 38.24 3.55
626 662 7.330946 TGATCCGAAAATTACTAAGTCAGTGTG 59.669 37.037 0.00 0.00 38.24 3.82
627 663 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
628 664 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
629 665 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
630 666 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
631 667 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
632 668 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
633 669 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
634 670 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
635 671 3.418068 GTCAGTGTGCAGCGCCTC 61.418 66.667 2.29 0.00 0.00 4.70
636 672 3.927548 TCAGTGTGCAGCGCCTCA 61.928 61.111 2.29 0.00 0.00 3.86
637 673 3.420606 CAGTGTGCAGCGCCTCAG 61.421 66.667 2.29 0.00 0.00 3.35
638 674 3.619767 AGTGTGCAGCGCCTCAGA 61.620 61.111 2.29 0.00 0.00 3.27
639 675 3.117171 GTGTGCAGCGCCTCAGAG 61.117 66.667 2.29 0.00 0.00 3.35
649 685 3.150335 CCTCAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
650 686 2.506061 CCTCAGAGCTAGGCGCCAT 61.506 63.158 31.54 16.46 40.39 4.40
651 687 1.181741 CCTCAGAGCTAGGCGCCATA 61.182 60.000 31.54 16.72 40.39 2.74
652 688 0.038709 CTCAGAGCTAGGCGCCATAC 60.039 60.000 31.54 17.11 40.39 2.39
653 689 0.468214 TCAGAGCTAGGCGCCATACT 60.468 55.000 31.54 21.99 40.39 2.12
654 690 1.202891 TCAGAGCTAGGCGCCATACTA 60.203 52.381 31.54 11.42 40.39 1.82
655 691 1.821753 CAGAGCTAGGCGCCATACTAT 59.178 52.381 31.54 16.52 40.39 2.12
656 692 3.017442 CAGAGCTAGGCGCCATACTATA 58.983 50.000 31.54 10.17 40.39 1.31
657 693 3.018149 AGAGCTAGGCGCCATACTATAC 58.982 50.000 31.54 11.65 40.39 1.47
658 694 2.099427 GAGCTAGGCGCCATACTATACC 59.901 54.545 31.54 6.26 40.39 2.73
659 695 2.100989 GCTAGGCGCCATACTATACCT 58.899 52.381 31.54 5.89 0.00 3.08
660 696 3.053842 AGCTAGGCGCCATACTATACCTA 60.054 47.826 31.54 6.89 40.39 3.08
661 697 3.315749 GCTAGGCGCCATACTATACCTAG 59.684 52.174 31.54 17.65 46.25 3.02
662 698 2.736347 AGGCGCCATACTATACCTAGG 58.264 52.381 31.54 7.41 0.00 3.02
663 699 1.136500 GGCGCCATACTATACCTAGGC 59.864 57.143 24.80 0.00 38.73 3.93
667 703 3.846360 GCCATACTATACCTAGGCGTTG 58.154 50.000 9.30 1.14 31.88 4.10
668 704 3.846360 CCATACTATACCTAGGCGTTGC 58.154 50.000 9.30 0.00 0.00 4.17
669 705 3.499048 CATACTATACCTAGGCGTTGCG 58.501 50.000 9.30 0.00 0.00 4.85
680 716 4.698496 CGTTGCGCTAGTTTCACG 57.302 55.556 9.73 1.86 0.00 4.35
681 717 1.129809 CGTTGCGCTAGTTTCACGG 59.870 57.895 9.73 0.00 0.00 4.94
682 718 1.279527 CGTTGCGCTAGTTTCACGGA 61.280 55.000 9.73 0.00 0.00 4.69
683 719 0.163146 GTTGCGCTAGTTTCACGGAC 59.837 55.000 9.73 0.00 0.00 4.79
684 720 0.249531 TTGCGCTAGTTTCACGGACA 60.250 50.000 9.73 0.00 0.00 4.02
685 721 0.666274 TGCGCTAGTTTCACGGACAG 60.666 55.000 9.73 0.00 0.00 3.51
686 722 0.666577 GCGCTAGTTTCACGGACAGT 60.667 55.000 0.00 0.00 0.00 3.55
687 723 1.779569 CGCTAGTTTCACGGACAGTT 58.220 50.000 0.00 0.00 0.00 3.16
688 724 2.923605 GCGCTAGTTTCACGGACAGTTA 60.924 50.000 0.00 0.00 0.00 2.24
689 725 3.311106 CGCTAGTTTCACGGACAGTTAA 58.689 45.455 0.00 0.00 0.00 2.01
690 726 3.924686 CGCTAGTTTCACGGACAGTTAAT 59.075 43.478 0.00 0.00 0.00 1.40
691 727 4.387862 CGCTAGTTTCACGGACAGTTAATT 59.612 41.667 0.00 0.00 0.00 1.40
692 728 5.444218 CGCTAGTTTCACGGACAGTTAATTC 60.444 44.000 0.00 0.00 0.00 2.17
693 729 5.638234 GCTAGTTTCACGGACAGTTAATTCT 59.362 40.000 0.00 0.00 0.00 2.40
694 730 5.924475 AGTTTCACGGACAGTTAATTCTG 57.076 39.130 0.00 0.00 40.80 3.02
696 732 5.236478 AGTTTCACGGACAGTTAATTCTGTG 59.764 40.000 4.62 13.60 46.81 3.66
702 738 7.972832 ACGGACAGTTAATTCTGTGATTTAA 57.027 32.000 4.62 0.00 46.81 1.52
703 739 8.561738 ACGGACAGTTAATTCTGTGATTTAAT 57.438 30.769 4.62 0.00 46.81 1.40
704 740 9.010029 ACGGACAGTTAATTCTGTGATTTAATT 57.990 29.630 4.62 0.00 46.81 1.40
705 741 9.840427 CGGACAGTTAATTCTGTGATTTAATTT 57.160 29.630 4.62 0.00 46.81 1.82
840 884 3.761218 TCCCGCTATCTGAAATTGCAAAA 59.239 39.130 1.71 0.00 0.00 2.44
864 908 0.109412 CGAGTTTCTACCGAACGCCT 60.109 55.000 0.00 0.00 0.00 5.52
917 961 2.291605 GCCCAAATCTCACCTAACCCTT 60.292 50.000 0.00 0.00 0.00 3.95
924 968 3.791320 TCTCACCTAACCCTTCACTCAT 58.209 45.455 0.00 0.00 0.00 2.90
927 971 1.831736 ACCTAACCCTTCACTCATCCG 59.168 52.381 0.00 0.00 0.00 4.18
1188 1232 3.295800 GGGGACTCCGACGACATT 58.704 61.111 0.00 0.00 0.00 2.71
1228 1272 1.914634 CGACATCTACAGGTGCACTC 58.085 55.000 17.98 7.02 0.00 3.51
1230 1274 1.827969 GACATCTACAGGTGCACTCCT 59.172 52.381 17.98 2.87 38.51 3.69
1252 1296 3.706373 CTCCACCCCGTCCCAGTG 61.706 72.222 0.00 0.00 0.00 3.66
1254 1298 4.329545 CCACCCCGTCCCAGTGTG 62.330 72.222 0.00 0.00 0.00 3.82
1255 1299 3.556306 CACCCCGTCCCAGTGTGT 61.556 66.667 0.00 0.00 0.00 3.72
1256 1300 3.556306 ACCCCGTCCCAGTGTGTG 61.556 66.667 0.00 0.00 0.00 3.82
1257 1301 3.556306 CCCCGTCCCAGTGTGTGT 61.556 66.667 0.00 0.00 0.00 3.72
1258 1302 2.030562 CCCGTCCCAGTGTGTGTC 59.969 66.667 0.00 0.00 0.00 3.67
1261 1640 0.670546 CCGTCCCAGTGTGTGTCATC 60.671 60.000 0.00 0.00 0.00 2.92
1294 2609 6.682863 CGTGTAATTTAGCAAGCAGTGTAATC 59.317 38.462 0.00 0.00 0.00 1.75
1385 3435 3.322501 TCCTGCAGGATAGCCAAGA 57.677 52.632 32.00 6.08 39.78 3.02
1390 3440 1.630369 TGCAGGATAGCCAAGAGTGTT 59.370 47.619 0.00 0.00 36.29 3.32
1440 3490 0.249120 TCGGTGGCTCAATCGATTGT 59.751 50.000 31.49 0.41 38.84 2.71
1579 3635 4.215827 AGAAAAGCATGAGCAGAACTTCAG 59.784 41.667 0.00 0.00 45.49 3.02
1648 3704 3.368236 GCTGATTTCCGTGTCTTGTCTAC 59.632 47.826 0.00 0.00 0.00 2.59
1760 3824 4.742659 GGTTTTGCGCAGACTGAAATAAAA 59.257 37.500 20.64 8.76 0.00 1.52
1801 3865 4.810790 ACGTGCATATAGGCTCTGAATAC 58.189 43.478 11.14 0.00 34.04 1.89
1823 3888 4.287067 ACTTCAGAGAAAAGGCAGTCCATA 59.713 41.667 0.00 0.00 33.74 2.74
1843 3915 7.586300 GTCCATACATCATACATAACGCAAAAC 59.414 37.037 0.00 0.00 0.00 2.43
1846 3922 9.449550 CATACATCATACATAACGCAAAACATT 57.550 29.630 0.00 0.00 0.00 2.71
1879 3957 3.717707 CTGAAACGAAAGGACAGAGACA 58.282 45.455 0.00 0.00 33.78 3.41
1926 4209 1.382914 AGGGACCTAAGGCCATGTTT 58.617 50.000 5.01 0.00 0.00 2.83
1927 4210 1.716503 AGGGACCTAAGGCCATGTTTT 59.283 47.619 5.01 0.00 0.00 2.43
1928 4211 1.824852 GGGACCTAAGGCCATGTTTTG 59.175 52.381 5.01 0.00 0.00 2.44
1929 4212 2.525368 GGACCTAAGGCCATGTTTTGT 58.475 47.619 5.01 0.00 0.00 2.83
1930 4213 2.492088 GGACCTAAGGCCATGTTTTGTC 59.508 50.000 5.01 1.73 0.00 3.18
1931 4214 2.492088 GACCTAAGGCCATGTTTTGTCC 59.508 50.000 5.01 0.00 0.00 4.02
1932 4215 2.110011 ACCTAAGGCCATGTTTTGTCCT 59.890 45.455 5.01 0.00 0.00 3.85
1933 4216 2.755103 CCTAAGGCCATGTTTTGTCCTC 59.245 50.000 5.01 0.00 0.00 3.71
1934 4217 1.247567 AAGGCCATGTTTTGTCCTCG 58.752 50.000 5.01 0.00 0.00 4.63
1935 4218 0.400213 AGGCCATGTTTTGTCCTCGA 59.600 50.000 5.01 0.00 0.00 4.04
1936 4219 1.202879 AGGCCATGTTTTGTCCTCGAA 60.203 47.619 5.01 0.00 0.00 3.71
1937 4220 1.068541 GGCCATGTTTTGTCCTCGAAC 60.069 52.381 0.00 0.00 0.00 3.95
1938 4221 1.399727 GCCATGTTTTGTCCTCGAACG 60.400 52.381 0.00 0.00 0.00 3.95
1939 4222 1.399727 CCATGTTTTGTCCTCGAACGC 60.400 52.381 0.00 0.00 0.00 4.84
1940 4223 0.511221 ATGTTTTGTCCTCGAACGCG 59.489 50.000 3.53 3.53 39.35 6.01
1941 4224 1.203313 GTTTTGTCCTCGAACGCGG 59.797 57.895 12.47 0.00 38.28 6.46
1942 4225 1.067749 TTTTGTCCTCGAACGCGGA 59.932 52.632 12.47 1.72 38.28 5.54
1943 4226 0.320073 TTTTGTCCTCGAACGCGGAT 60.320 50.000 12.47 0.00 38.28 4.18
1944 4227 0.734942 TTTGTCCTCGAACGCGGATC 60.735 55.000 12.47 7.67 38.28 3.36
1945 4228 1.592400 TTGTCCTCGAACGCGGATCT 61.592 55.000 12.47 0.00 38.28 2.75
1946 4229 1.586564 GTCCTCGAACGCGGATCTG 60.587 63.158 12.47 0.00 38.28 2.90
1947 4230 2.044555 TCCTCGAACGCGGATCTGT 61.045 57.895 12.47 0.00 38.28 3.41
1948 4231 0.745486 TCCTCGAACGCGGATCTGTA 60.745 55.000 12.47 0.00 38.28 2.74
1949 4232 0.311165 CCTCGAACGCGGATCTGTAT 59.689 55.000 12.47 0.00 38.28 2.29
1950 4233 1.663445 CCTCGAACGCGGATCTGTATC 60.663 57.143 12.47 0.00 38.28 2.24
1951 4234 0.041576 TCGAACGCGGATCTGTATCG 60.042 55.000 12.47 15.26 38.28 2.92
1952 4235 0.997226 CGAACGCGGATCTGTATCGG 60.997 60.000 12.47 0.00 35.96 4.18
1956 4239 2.258591 CGGATCTGTATCGGCCCG 59.741 66.667 0.00 0.00 32.44 6.13
1957 4240 2.561956 CGGATCTGTATCGGCCCGT 61.562 63.158 1.63 0.00 32.44 5.28
1958 4241 1.289380 GGATCTGTATCGGCCCGTC 59.711 63.158 1.63 0.00 32.44 4.79
1959 4242 1.461091 GGATCTGTATCGGCCCGTCA 61.461 60.000 1.63 0.53 32.44 4.35
2486 4786 8.974238 ACTAATCATTCAATGACAAATCCATGT 58.026 29.630 0.98 0.00 43.01 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.298729 GCAGGATGTGAGGGATACTCTC 59.701 54.545 0.00 0.00 41.43 3.20
85 86 0.039437 ACATGTCACCGAGTCACGTC 60.039 55.000 0.00 0.00 40.78 4.34
86 87 0.318699 CACATGTCACCGAGTCACGT 60.319 55.000 0.00 0.00 40.78 4.49
87 88 0.318699 ACACATGTCACCGAGTCACG 60.319 55.000 0.00 0.00 42.18 4.35
88 89 1.139989 CACACATGTCACCGAGTCAC 58.860 55.000 0.00 0.00 0.00 3.67
89 90 0.750249 ACACACATGTCACCGAGTCA 59.250 50.000 0.00 0.00 31.55 3.41
116 124 2.790791 AAGGAGATGAGCTCGGCCG 61.791 63.158 22.12 22.12 44.91 6.13
121 129 3.876320 GACAATTCCAAGGAGATGAGCTC 59.124 47.826 6.82 6.82 43.17 4.09
136 144 6.364165 CACAACATCTTTGGACATGACAATTC 59.636 38.462 0.00 0.00 0.00 2.17
137 145 6.040729 TCACAACATCTTTGGACATGACAATT 59.959 34.615 0.00 0.00 0.00 2.32
142 150 4.717877 AGTCACAACATCTTTGGACATGA 58.282 39.130 0.00 0.00 0.00 3.07
148 156 4.641396 TCACCTAGTCACAACATCTTTGG 58.359 43.478 0.00 0.00 0.00 3.28
184 192 0.609957 CCTTCCCATGCTTGCAGACA 60.610 55.000 0.87 0.00 0.00 3.41
188 196 1.000521 CCTCCTTCCCATGCTTGCA 60.001 57.895 0.00 0.00 0.00 4.08
193 201 1.423161 AGCTTATCCTCCTTCCCATGC 59.577 52.381 0.00 0.00 0.00 4.06
216 224 1.475280 TCTATACCGCACCACAGTGTC 59.525 52.381 0.00 0.00 46.35 3.67
222 230 2.822764 CCTCTTTCTATACCGCACCAC 58.177 52.381 0.00 0.00 0.00 4.16
223 231 1.138266 GCCTCTTTCTATACCGCACCA 59.862 52.381 0.00 0.00 0.00 4.17
224 232 1.867166 GCCTCTTTCTATACCGCACC 58.133 55.000 0.00 0.00 0.00 5.01
232 240 4.645136 TCATGTGTCTACGCCTCTTTCTAT 59.355 41.667 0.00 0.00 0.00 1.98
239 247 2.480416 CCTCTTCATGTGTCTACGCCTC 60.480 54.545 0.00 0.00 0.00 4.70
242 250 2.263077 CACCTCTTCATGTGTCTACGC 58.737 52.381 0.00 0.00 0.00 4.42
243 251 2.417379 CCCACCTCTTCATGTGTCTACG 60.417 54.545 0.00 0.00 0.00 3.51
245 253 2.902608 ACCCACCTCTTCATGTGTCTA 58.097 47.619 0.00 0.00 0.00 2.59
246 254 1.734655 ACCCACCTCTTCATGTGTCT 58.265 50.000 0.00 0.00 0.00 3.41
248 256 3.587061 TCAATACCCACCTCTTCATGTGT 59.413 43.478 0.00 0.00 0.00 3.72
249 257 4.194640 CTCAATACCCACCTCTTCATGTG 58.805 47.826 0.00 0.00 0.00 3.21
250 258 3.370953 GCTCAATACCCACCTCTTCATGT 60.371 47.826 0.00 0.00 0.00 3.21
251 259 3.209410 GCTCAATACCCACCTCTTCATG 58.791 50.000 0.00 0.00 0.00 3.07
252 260 2.846206 TGCTCAATACCCACCTCTTCAT 59.154 45.455 0.00 0.00 0.00 2.57
253 261 2.265367 TGCTCAATACCCACCTCTTCA 58.735 47.619 0.00 0.00 0.00 3.02
254 262 3.350219 TTGCTCAATACCCACCTCTTC 57.650 47.619 0.00 0.00 0.00 2.87
255 263 4.683400 CGTATTGCTCAATACCCACCTCTT 60.683 45.833 20.71 0.00 46.34 2.85
256 264 3.181465 CGTATTGCTCAATACCCACCTCT 60.181 47.826 20.71 0.00 46.34 3.69
257 265 3.131396 CGTATTGCTCAATACCCACCTC 58.869 50.000 20.71 2.19 46.34 3.85
258 266 2.504175 ACGTATTGCTCAATACCCACCT 59.496 45.455 20.71 3.06 46.34 4.00
259 267 2.914059 ACGTATTGCTCAATACCCACC 58.086 47.619 20.71 3.30 46.34 4.61
260 268 4.957759 AAACGTATTGCTCAATACCCAC 57.042 40.909 20.71 5.52 46.34 4.61
261 269 5.336055 CCAAAAACGTATTGCTCAATACCCA 60.336 40.000 20.71 0.00 46.34 4.51
278 286 3.892588 TCACACCCTCATAACCCAAAAAC 59.107 43.478 0.00 0.00 0.00 2.43
283 291 4.396357 AAAATCACACCCTCATAACCCA 57.604 40.909 0.00 0.00 0.00 4.51
315 323 2.031037 TCACGGTCGTACGTTACAAC 57.969 50.000 16.05 5.28 46.25 3.32
316 324 2.765108 TTCACGGTCGTACGTTACAA 57.235 45.000 16.05 0.00 46.25 2.41
317 325 2.765108 TTTCACGGTCGTACGTTACA 57.235 45.000 16.05 0.00 46.25 2.41
318 326 3.668191 TCATTTTCACGGTCGTACGTTAC 59.332 43.478 16.05 6.87 46.25 2.50
319 327 3.894920 TCATTTTCACGGTCGTACGTTA 58.105 40.909 16.05 0.00 46.25 3.18
320 328 2.727798 CTCATTTTCACGGTCGTACGTT 59.272 45.455 16.05 0.00 46.25 3.99
323 331 3.181546 CGTTCTCATTTTCACGGTCGTAC 60.182 47.826 0.00 0.00 0.00 3.67
324 332 2.981805 CGTTCTCATTTTCACGGTCGTA 59.018 45.455 0.00 0.00 0.00 3.43
325 333 1.790623 CGTTCTCATTTTCACGGTCGT 59.209 47.619 0.00 0.00 0.00 4.34
326 334 1.790623 ACGTTCTCATTTTCACGGTCG 59.209 47.619 0.00 0.00 36.95 4.79
328 336 3.930848 GGATACGTTCTCATTTTCACGGT 59.069 43.478 0.00 0.00 36.95 4.83
341 377 2.352519 GGCGAGATAAGGGGATACGTTC 60.353 54.545 0.00 0.00 37.60 3.95
345 381 1.066787 GCTGGCGAGATAAGGGGATAC 60.067 57.143 0.00 0.00 0.00 2.24
351 387 2.663188 GCGGCTGGCGAGATAAGG 60.663 66.667 28.34 0.00 0.00 2.69
369 405 3.706373 GCGGAGGAAGGCCACAGA 61.706 66.667 5.01 0.00 36.29 3.41
375 411 3.470888 TAGCAGGCGGAGGAAGGC 61.471 66.667 0.00 0.00 0.00 4.35
376 412 2.501610 GTAGCAGGCGGAGGAAGG 59.498 66.667 0.00 0.00 0.00 3.46
421 457 8.007390 AATTTGTCAAATTTGCCAGATCTGGAG 61.007 37.037 40.29 18.96 44.55 3.86
422 458 6.239657 AATTTGTCAAATTTGCCAGATCTGGA 60.240 34.615 40.29 23.18 44.55 3.86
423 459 5.935789 AATTTGTCAAATTTGCCAGATCTGG 59.064 36.000 33.73 33.73 44.56 3.86
424 460 7.429636 AAATTTGTCAAATTTGCCAGATCTG 57.570 32.000 27.61 16.24 46.30 2.90
452 488 5.524511 TTGTGATTTGATTTCGTCCGTAG 57.475 39.130 0.00 0.00 0.00 3.51
453 489 5.926214 TTTGTGATTTGATTTCGTCCGTA 57.074 34.783 0.00 0.00 0.00 4.02
454 490 4.822036 TTTGTGATTTGATTTCGTCCGT 57.178 36.364 0.00 0.00 0.00 4.69
455 491 5.855925 TCATTTTGTGATTTGATTTCGTCCG 59.144 36.000 0.00 0.00 0.00 4.79
456 492 7.382218 AGTTCATTTTGTGATTTGATTTCGTCC 59.618 33.333 0.00 0.00 36.54 4.79
457 493 8.209869 CAGTTCATTTTGTGATTTGATTTCGTC 58.790 33.333 0.00 0.00 36.54 4.20
458 494 7.706179 ACAGTTCATTTTGTGATTTGATTTCGT 59.294 29.630 0.00 0.00 36.54 3.85
459 495 8.064447 ACAGTTCATTTTGTGATTTGATTTCG 57.936 30.769 0.00 0.00 36.54 3.46
460 496 8.490355 GGACAGTTCATTTTGTGATTTGATTTC 58.510 33.333 0.00 0.00 36.54 2.17
461 497 7.169645 CGGACAGTTCATTTTGTGATTTGATTT 59.830 33.333 0.00 0.00 36.54 2.17
462 498 6.642131 CGGACAGTTCATTTTGTGATTTGATT 59.358 34.615 0.00 0.00 36.54 2.57
463 499 6.151691 CGGACAGTTCATTTTGTGATTTGAT 58.848 36.000 0.00 0.00 36.54 2.57
464 500 5.067153 ACGGACAGTTCATTTTGTGATTTGA 59.933 36.000 0.00 0.00 36.54 2.69
465 501 5.173673 CACGGACAGTTCATTTTGTGATTTG 59.826 40.000 0.00 0.00 36.54 2.32
466 502 5.067153 TCACGGACAGTTCATTTTGTGATTT 59.933 36.000 0.00 0.00 36.54 2.17
467 503 4.578516 TCACGGACAGTTCATTTTGTGATT 59.421 37.500 0.00 0.00 36.54 2.57
468 504 4.133820 TCACGGACAGTTCATTTTGTGAT 58.866 39.130 0.00 0.00 36.54 3.06
469 505 3.536570 TCACGGACAGTTCATTTTGTGA 58.463 40.909 0.00 0.00 33.14 3.58
470 506 3.961477 TCACGGACAGTTCATTTTGTG 57.039 42.857 0.00 0.00 0.00 3.33
471 507 4.398044 AGTTTCACGGACAGTTCATTTTGT 59.602 37.500 0.00 0.00 0.00 2.83
472 508 4.920376 AGTTTCACGGACAGTTCATTTTG 58.080 39.130 0.00 0.00 0.00 2.44
473 509 6.877611 ATAGTTTCACGGACAGTTCATTTT 57.122 33.333 0.00 0.00 0.00 1.82
474 510 6.877611 AATAGTTTCACGGACAGTTCATTT 57.122 33.333 0.00 0.00 0.00 2.32
475 511 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
476 512 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
477 513 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
478 514 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
488 524 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
489 525 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
490 526 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
491 527 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
492 528 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
493 529 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
494 530 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
495 531 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
496 532 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
497 533 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
498 534 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
499 535 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
500 536 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
501 537 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
502 538 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
503 539 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
504 540 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
505 541 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
506 542 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
507 543 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
508 544 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
509 545 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
510 546 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
511 547 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
512 548 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
513 549 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
514 550 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
515 551 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
516 552 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
517 553 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
518 554 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
519 555 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
520 556 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
528 564 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
529 565 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
530 566 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
531 567 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
532 568 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
533 569 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
534 570 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
535 571 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
536 572 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
537 573 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
538 574 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
539 575 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
540 576 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
542 578 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
543 579 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
544 580 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
545 581 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
546 582 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
547 583 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
548 584 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
549 585 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
551 587 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
552 588 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
553 589 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
554 590 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
560 596 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
561 597 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
562 598 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
563 599 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
564 600 1.734137 CCGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 39.71 3.41
565 601 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
566 602 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
567 603 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
568 604 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
569 605 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
587 623 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
588 624 2.813908 GGATCACACGGGTGCGAC 60.814 66.667 14.50 6.54 44.87 5.19
589 625 4.429212 CGGATCACACGGGTGCGA 62.429 66.667 14.50 0.00 44.87 5.10
590 626 3.925362 TTCGGATCACACGGGTGCG 62.925 63.158 14.50 11.68 44.87 5.34
591 627 1.231958 TTTTCGGATCACACGGGTGC 61.232 55.000 14.50 0.00 44.87 5.01
592 628 1.448985 ATTTTCGGATCACACGGGTG 58.551 50.000 12.84 12.84 46.66 4.61
593 629 2.194201 AATTTTCGGATCACACGGGT 57.806 45.000 0.00 0.00 0.00 5.28
594 630 3.267483 AGTAATTTTCGGATCACACGGG 58.733 45.455 0.00 0.00 0.00 5.28
595 631 5.579511 ACTTAGTAATTTTCGGATCACACGG 59.420 40.000 0.00 0.00 0.00 4.94
596 632 6.309494 TGACTTAGTAATTTTCGGATCACACG 59.691 38.462 0.00 0.00 0.00 4.49
597 633 7.331193 ACTGACTTAGTAATTTTCGGATCACAC 59.669 37.037 0.00 0.00 38.04 3.82
598 634 7.330946 CACTGACTTAGTAATTTTCGGATCACA 59.669 37.037 0.00 0.00 37.60 3.58
599 635 7.331193 ACACTGACTTAGTAATTTTCGGATCAC 59.669 37.037 0.00 0.00 37.60 3.06
600 636 7.330946 CACACTGACTTAGTAATTTTCGGATCA 59.669 37.037 0.00 0.00 37.60 2.92
601 637 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
602 638 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
603 639 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
604 640 5.178623 TGCACACTGACTTAGTAATTTTCGG 59.821 40.000 0.00 0.00 37.60 4.30
605 641 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
606 642 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
607 643 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
608 644 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
609 645 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
610 646 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
611 647 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
612 648 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
613 649 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
614 650 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
615 651 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
616 652 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
617 653 3.873026 GAGGCGCTGCACACTGACT 62.873 63.158 7.64 0.00 0.00 3.41
618 654 3.418068 GAGGCGCTGCACACTGAC 61.418 66.667 7.64 0.00 0.00 3.51
619 655 3.871248 CTGAGGCGCTGCACACTGA 62.871 63.158 7.64 0.00 0.00 3.41
620 656 3.420606 CTGAGGCGCTGCACACTG 61.421 66.667 7.64 0.00 0.00 3.66
621 657 3.586461 CTCTGAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
622 658 3.117171 CTCTGAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
624 660 3.362399 TAGCTCTGAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
625 661 3.070576 TAGCTCTGAGGCGCTGCA 61.071 61.111 7.64 4.82 37.05 4.41
626 662 2.279385 CTAGCTCTGAGGCGCTGC 60.279 66.667 7.64 0.00 37.05 5.25
627 663 2.416678 CCTAGCTCTGAGGCGCTG 59.583 66.667 7.64 0.00 37.05 5.18
639 675 5.758429 CCTAGGTATAGTATGGCGCCTAGC 61.758 54.167 29.70 19.21 42.35 3.42
640 676 3.884091 CCTAGGTATAGTATGGCGCCTAG 59.116 52.174 29.70 15.83 42.96 3.02
641 677 3.894759 CCTAGGTATAGTATGGCGCCTA 58.105 50.000 29.70 14.84 0.00 3.93
642 678 2.736347 CCTAGGTATAGTATGGCGCCT 58.264 52.381 29.70 15.76 0.00 5.52
643 679 1.136500 GCCTAGGTATAGTATGGCGCC 59.864 57.143 22.73 22.73 0.00 6.53
644 680 2.580966 GCCTAGGTATAGTATGGCGC 57.419 55.000 11.31 0.00 0.00 6.53
646 682 3.846360 CAACGCCTAGGTATAGTATGGC 58.154 50.000 11.31 0.00 37.24 4.40
647 683 3.672511 CGCAACGCCTAGGTATAGTATGG 60.673 52.174 11.31 1.79 0.00 2.74
648 684 3.499048 CGCAACGCCTAGGTATAGTATG 58.501 50.000 11.31 8.11 0.00 2.39
649 685 3.844577 CGCAACGCCTAGGTATAGTAT 57.155 47.619 11.31 0.00 0.00 2.12
661 697 2.811893 CGTGAAACTAGCGCAACGCC 62.812 60.000 11.47 0.00 45.42 5.68
662 698 1.507096 CGTGAAACTAGCGCAACGC 60.507 57.895 11.47 3.31 44.87 4.84
663 699 1.129809 CCGTGAAACTAGCGCAACG 59.870 57.895 11.47 7.53 31.75 4.10
664 700 0.163146 GTCCGTGAAACTAGCGCAAC 59.837 55.000 11.47 0.00 31.75 4.17
665 701 0.249531 TGTCCGTGAAACTAGCGCAA 60.250 50.000 11.47 0.00 31.75 4.85
666 702 0.666274 CTGTCCGTGAAACTAGCGCA 60.666 55.000 11.47 0.00 31.75 6.09
667 703 0.666577 ACTGTCCGTGAAACTAGCGC 60.667 55.000 0.00 0.00 31.75 5.92
668 704 1.779569 AACTGTCCGTGAAACTAGCG 58.220 50.000 0.00 0.00 31.75 4.26
669 705 5.638234 AGAATTAACTGTCCGTGAAACTAGC 59.362 40.000 0.00 0.00 31.75 3.42
670 706 6.645415 ACAGAATTAACTGTCCGTGAAACTAG 59.355 38.462 0.00 0.00 46.36 2.57
671 707 6.518493 ACAGAATTAACTGTCCGTGAAACTA 58.482 36.000 0.00 0.00 46.36 2.24
672 708 5.365619 ACAGAATTAACTGTCCGTGAAACT 58.634 37.500 0.00 0.00 46.36 2.66
673 709 5.668558 ACAGAATTAACTGTCCGTGAAAC 57.331 39.130 0.00 0.00 46.36 2.78
712 748 9.651913 GGAGGCAAATTTGACAAATTTAATCTA 57.348 29.630 29.34 0.00 46.34 1.98
713 749 8.156165 TGGAGGCAAATTTGACAAATTTAATCT 58.844 29.630 29.34 25.08 46.34 2.40
714 750 8.321650 TGGAGGCAAATTTGACAAATTTAATC 57.678 30.769 29.34 25.07 46.34 1.75
715 751 8.156165 TCTGGAGGCAAATTTGACAAATTTAAT 58.844 29.630 29.34 20.69 46.34 1.40
716 752 7.504403 TCTGGAGGCAAATTTGACAAATTTAA 58.496 30.769 29.34 14.95 46.34 1.52
717 753 7.060383 TCTGGAGGCAAATTTGACAAATTTA 57.940 32.000 29.34 16.92 46.34 1.40
719 755 5.549742 TCTGGAGGCAAATTTGACAAATT 57.450 34.783 25.59 18.41 42.62 1.82
720 756 5.482878 AGATCTGGAGGCAAATTTGACAAAT 59.517 36.000 25.59 7.62 39.18 2.32
721 757 4.834496 AGATCTGGAGGCAAATTTGACAAA 59.166 37.500 25.59 9.64 39.18 2.83
722 758 4.410099 AGATCTGGAGGCAAATTTGACAA 58.590 39.130 25.59 9.99 39.18 3.18
723 759 4.012374 GAGATCTGGAGGCAAATTTGACA 58.988 43.478 25.59 14.11 39.18 3.58
724 760 4.012374 TGAGATCTGGAGGCAAATTTGAC 58.988 43.478 22.31 19.61 36.08 3.18
725 761 4.267536 CTGAGATCTGGAGGCAAATTTGA 58.732 43.478 22.31 0.00 0.00 2.69
726 762 3.380637 CCTGAGATCTGGAGGCAAATTTG 59.619 47.826 14.03 14.03 37.15 2.32
727 763 3.629087 CCTGAGATCTGGAGGCAAATTT 58.371 45.455 0.00 0.00 37.15 1.82
728 764 3.294038 CCTGAGATCTGGAGGCAAATT 57.706 47.619 0.00 0.00 37.15 1.82
734 770 1.440893 CGTGCCTGAGATCTGGAGG 59.559 63.158 0.00 6.48 37.15 4.30
739 775 2.186384 GCTGCGTGCCTGAGATCT 59.814 61.111 0.00 0.00 35.15 2.75
740 776 2.125391 TGCTGCGTGCCTGAGATC 60.125 61.111 0.00 0.00 42.00 2.75
759 795 2.203070 GCGACTTGGGATGGCGAT 60.203 61.111 0.00 0.00 0.00 4.58
812 855 1.696097 TTCAGATAGCGGGAAGGGGC 61.696 60.000 0.00 0.00 0.00 5.80
840 884 2.731341 CGTTCGGTAGAAACTCGCTGAT 60.731 50.000 0.00 0.00 38.23 2.90
864 908 3.640407 GCCTGCAGGTGAGGTCCA 61.640 66.667 32.81 0.00 37.57 4.02
888 932 1.152881 GAGATTTGGGCGGCTGGAT 60.153 57.895 9.56 0.00 0.00 3.41
917 961 4.819761 GCGCAGGCGGATGAGTGA 62.820 66.667 16.06 0.00 40.19 3.41
1086 1130 2.664851 TGCTTCACGCCGTGGAAG 60.665 61.111 18.32 18.52 38.05 3.46
1188 1232 1.372499 GTAGCTGACGGTGTGCGAA 60.372 57.895 0.00 0.00 0.00 4.70
1191 1235 2.383527 GCTGTAGCTGACGGTGTGC 61.384 63.158 0.00 0.00 36.71 4.57
1247 1291 4.539870 GAAAACATGATGACACACACTGG 58.460 43.478 0.00 0.00 0.00 4.00
1252 1296 4.209452 ACACGAAAACATGATGACACAC 57.791 40.909 0.00 0.00 0.00 3.82
1254 1298 7.851822 AAATTACACGAAAACATGATGACAC 57.148 32.000 0.00 0.00 0.00 3.67
1255 1299 7.748683 GCTAAATTACACGAAAACATGATGACA 59.251 33.333 0.00 0.00 0.00 3.58
1256 1300 7.748683 TGCTAAATTACACGAAAACATGATGAC 59.251 33.333 0.00 0.00 0.00 3.06
1257 1301 7.811653 TGCTAAATTACACGAAAACATGATGA 58.188 30.769 0.00 0.00 0.00 2.92
1258 1302 8.446489 TTGCTAAATTACACGAAAACATGATG 57.554 30.769 0.00 0.00 0.00 3.07
1261 1640 6.362016 TGCTTGCTAAATTACACGAAAACATG 59.638 34.615 0.00 0.00 0.00 3.21
1294 2609 4.001652 ACTGTGCTGACAAGATGAATCTG 58.998 43.478 0.00 0.00 37.19 2.90
1385 3435 1.268899 CGACGGACCTTCTACAACACT 59.731 52.381 0.00 0.00 0.00 3.55
1390 3440 0.673333 TACGCGACGGACCTTCTACA 60.673 55.000 15.93 0.00 0.00 2.74
1440 3490 1.153269 TTGAGCAGCGTGGTGTTGA 60.153 52.632 0.64 0.00 0.00 3.18
1579 3635 2.923121 TGGTCAGGCTTTCTCATATGC 58.077 47.619 0.00 0.00 0.00 3.14
1635 3691 7.891220 CACGTTTATAATTGTAGACAAGACACG 59.109 37.037 1.09 6.16 39.47 4.49
1648 3704 7.061673 CCACAATCAACACCACGTTTATAATTG 59.938 37.037 0.00 0.00 34.86 2.32
1720 3777 5.105756 GCAAAACCTAGTAGCACCATCAATT 60.106 40.000 0.00 0.00 0.00 2.32
1727 3784 0.446616 GCGCAAAACCTAGTAGCACC 59.553 55.000 0.30 0.00 0.00 5.01
1801 3865 3.131709 TGGACTGCCTTTTCTCTGAAG 57.868 47.619 0.00 0.00 34.31 3.02
1817 3882 6.779115 TTGCGTTATGTATGATGTATGGAC 57.221 37.500 0.00 0.00 0.00 4.02
1823 3888 7.913297 GGTAATGTTTTGCGTTATGTATGATGT 59.087 33.333 0.00 0.00 31.91 3.06
1843 3915 4.982295 TCGTTTCAGCTCGATATGGTAATG 59.018 41.667 0.00 0.00 0.00 1.90
1846 3922 4.642445 TTCGTTTCAGCTCGATATGGTA 57.358 40.909 0.00 0.00 36.01 3.25
1879 3957 1.904287 TCTTGTTGTTTAGCGGCCAT 58.096 45.000 2.24 0.00 0.00 4.40
1926 4209 1.153901 GATCCGCGTTCGAGGACAA 60.154 57.895 18.49 0.00 36.96 3.18
1927 4210 2.044555 AGATCCGCGTTCGAGGACA 61.045 57.895 18.49 0.00 36.96 4.02
1928 4211 1.586564 CAGATCCGCGTTCGAGGAC 60.587 63.158 18.49 12.69 36.96 3.85
1929 4212 0.745486 TACAGATCCGCGTTCGAGGA 60.745 55.000 18.43 18.43 38.40 3.71
1930 4213 0.311165 ATACAGATCCGCGTTCGAGG 59.689 55.000 4.92 8.57 38.10 4.63
1931 4214 1.676057 GATACAGATCCGCGTTCGAG 58.324 55.000 4.92 3.06 38.10 4.04
1932 4215 0.041576 CGATACAGATCCGCGTTCGA 60.042 55.000 4.92 0.00 38.10 3.71
1933 4216 0.997226 CCGATACAGATCCGCGTTCG 60.997 60.000 4.92 1.40 0.00 3.95
1934 4217 1.276145 GCCGATACAGATCCGCGTTC 61.276 60.000 4.92 1.11 0.00 3.95
1935 4218 1.299926 GCCGATACAGATCCGCGTT 60.300 57.895 4.92 0.00 0.00 4.84
1936 4219 2.335369 GCCGATACAGATCCGCGT 59.665 61.111 4.92 0.00 0.00 6.01
1937 4220 2.430921 GGCCGATACAGATCCGCG 60.431 66.667 0.00 0.00 37.23 6.46
1938 4221 2.048127 GGGCCGATACAGATCCGC 60.048 66.667 0.00 0.00 36.07 5.54
1939 4222 2.258591 CGGGCCGATACAGATCCG 59.741 66.667 24.41 0.00 0.00 4.18
1940 4223 1.289380 GACGGGCCGATACAGATCC 59.711 63.158 35.78 5.68 0.00 3.36
1941 4224 0.387929 TTGACGGGCCGATACAGATC 59.612 55.000 35.78 18.30 0.00 2.75
1942 4225 0.389391 CTTGACGGGCCGATACAGAT 59.611 55.000 35.78 8.07 0.00 2.90
1943 4226 1.813859 CTTGACGGGCCGATACAGA 59.186 57.895 35.78 16.66 0.00 3.41
1944 4227 1.883084 GCTTGACGGGCCGATACAG 60.883 63.158 35.78 21.83 0.00 2.74
1945 4228 2.185867 GCTTGACGGGCCGATACA 59.814 61.111 35.78 24.62 0.00 2.29
1946 4229 1.883084 CTGCTTGACGGGCCGATAC 60.883 63.158 35.78 22.33 0.00 2.24
1947 4230 2.499205 CTGCTTGACGGGCCGATA 59.501 61.111 35.78 18.14 0.00 2.92
1948 4231 4.473520 CCTGCTTGACGGGCCGAT 62.474 66.667 35.78 17.45 38.23 4.18
1953 4236 4.722700 CCACCCCTGCTTGACGGG 62.723 72.222 0.00 0.00 45.52 5.28
1954 4237 3.612247 CTCCACCCCTGCTTGACGG 62.612 68.421 0.00 0.00 0.00 4.79
1955 4238 2.046892 CTCCACCCCTGCTTGACG 60.047 66.667 0.00 0.00 0.00 4.35
1956 4239 2.360475 GCTCCACCCCTGCTTGAC 60.360 66.667 0.00 0.00 0.00 3.18
1957 4240 3.650950 GGCTCCACCCCTGCTTGA 61.651 66.667 0.00 0.00 0.00 3.02
1958 4241 3.933048 CTGGCTCCACCCCTGCTTG 62.933 68.421 0.00 0.00 37.83 4.01
1959 4242 3.655211 CTGGCTCCACCCCTGCTT 61.655 66.667 0.00 0.00 37.83 3.91
2452 4752 8.620116 TGTCATTGAATGATTAGTTGAAGTCA 57.380 30.769 11.46 0.00 42.04 3.41
2486 4786 7.665559 ACAATTCTTGTGAGATACCTTAGCAAA 59.334 33.333 0.00 0.00 43.48 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.