Multiple sequence alignment - TraesCS7D01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G276100 chr7D 100.000 6147 0 0 2414 8560 264739967 264746113 0.000000e+00 11352.0
1 TraesCS7D01G276100 chr7D 100.000 2087 0 0 1 2087 264737554 264739640 0.000000e+00 3855.0
2 TraesCS7D01G276100 chr7D 83.636 55 9 0 5391 5445 487392366 487392420 1.600000e-02 52.8
3 TraesCS7D01G276100 chr7B 95.649 2597 95 11 5378 7961 245062231 245064822 0.000000e+00 4154.0
4 TraesCS7D01G276100 chr7B 96.348 2081 49 3 2414 4486 245060173 245062234 0.000000e+00 3397.0
5 TraesCS7D01G276100 chr7B 94.194 1378 47 8 732 2087 245058772 245060138 0.000000e+00 2071.0
6 TraesCS7D01G276100 chr7B 89.754 244 12 5 8328 8558 245065014 245065257 5.020000e-77 300.0
7 TraesCS7D01G276100 chr7B 93.750 112 3 1 8055 8162 245064842 245064953 1.910000e-36 165.0
8 TraesCS7D01G276100 chr7B 80.682 176 16 4 4481 4656 12388763 12388606 4.200000e-23 121.0
9 TraesCS7D01G276100 chr7A 94.970 1332 42 8 779 2087 288876292 288877621 0.000000e+00 2065.0
10 TraesCS7D01G276100 chr7A 94.984 1216 52 4 5819 7028 288880216 288881428 0.000000e+00 1899.0
11 TraesCS7D01G276100 chr7A 95.629 755 19 4 2423 3164 288877625 288878378 0.000000e+00 1199.0
12 TraesCS7D01G276100 chr7A 95.697 674 25 2 3812 4482 288879073 288879745 0.000000e+00 1081.0
13 TraesCS7D01G276100 chr7A 95.745 658 23 3 7026 7679 288881628 288882284 0.000000e+00 1055.0
14 TraesCS7D01G276100 chr7A 98.285 583 10 0 3161 3743 288878464 288879046 0.000000e+00 1022.0
15 TraesCS7D01G276100 chr7A 89.846 778 61 15 1 764 288875411 288876184 0.000000e+00 983.0
16 TraesCS7D01G276100 chr7A 93.366 618 36 5 3043 3656 449709844 449710460 0.000000e+00 909.0
17 TraesCS7D01G276100 chr7A 90.329 486 33 9 7719 8198 288882657 288883134 7.300000e-175 625.0
18 TraesCS7D01G276100 chr7A 82.629 639 97 12 98 726 571327849 571328483 3.490000e-153 553.0
19 TraesCS7D01G276100 chr7A 95.987 299 11 1 5380 5678 288879748 288880045 1.290000e-132 484.0
20 TraesCS7D01G276100 chr6D 97.685 907 20 1 4482 5387 114174704 114175610 0.000000e+00 1557.0
21 TraesCS7D01G276100 chr6D 89.091 220 24 0 4476 4695 7525764 7525983 3.040000e-69 274.0
22 TraesCS7D01G276100 chr6D 94.690 113 6 0 5267 5379 7526636 7526748 8.830000e-40 176.0
23 TraesCS7D01G276100 chr4A 90.726 895 64 3 4486 5379 607474620 607475496 0.000000e+00 1175.0
24 TraesCS7D01G276100 chr4A 83.176 636 89 14 101 726 564975216 564974589 4.490000e-157 566.0
25 TraesCS7D01G276100 chr4A 100.000 28 0 0 5418 5445 471791652 471791679 1.600000e-02 52.8
26 TraesCS7D01G276100 chr5A 93.204 618 37 5 3043 3656 641406285 641406901 0.000000e+00 904.0
27 TraesCS7D01G276100 chr5A 85.852 728 77 18 5 724 2116658 2115949 0.000000e+00 750.0
28 TraesCS7D01G276100 chr5A 75.732 820 163 27 6432 7235 550645238 550646037 6.270000e-101 379.0
29 TraesCS7D01G276100 chr5A 91.429 210 18 0 4486 4695 331943512 331943303 1.090000e-73 289.0
30 TraesCS7D01G276100 chr6B 86.724 693 77 14 1 684 693041718 693041032 0.000000e+00 756.0
31 TraesCS7D01G276100 chr6B 94.175 103 6 0 5267 5369 715306249 715306147 3.200000e-34 158.0
32 TraesCS7D01G276100 chr6B 97.222 36 0 1 5420 5455 222680221 222680255 9.280000e-05 60.2
33 TraesCS7D01G276100 chr5B 86.338 710 74 15 5 709 4544517 4545208 0.000000e+00 752.0
34 TraesCS7D01G276100 chr5B 75.175 858 171 31 6432 7272 530232643 530233475 4.880000e-97 366.0
35 TraesCS7D01G276100 chr5D 86.424 604 68 12 54 651 238134853 238134258 0.000000e+00 649.0
36 TraesCS7D01G276100 chr5D 78.558 541 96 14 6432 6967 436190802 436191327 1.060000e-88 339.0
37 TraesCS7D01G276100 chr2B 79.853 680 106 22 2 665 20701385 20700721 1.300000e-127 468.0
38 TraesCS7D01G276100 chr2B 86.321 424 55 3 4957 5379 498298079 498298500 7.830000e-125 459.0
39 TraesCS7D01G276100 chr2B 88.991 218 23 1 4481 4698 498297630 498297846 1.420000e-67 268.0
40 TraesCS7D01G276100 chr2B 90.265 113 11 0 5267 5379 406881035 406880923 1.930000e-31 148.0
41 TraesCS7D01G276100 chr2D 80.222 632 104 19 64 684 4595023 4595644 1.010000e-123 455.0
42 TraesCS7D01G276100 chr2D 100.000 28 0 0 5418 5445 236863066 236863039 1.600000e-02 52.8
43 TraesCS7D01G276100 chr3B 87.730 163 20 0 4494 4656 762782071 762781909 3.150000e-44 191.0
44 TraesCS7D01G276100 chr1B 93.805 113 7 0 5267 5379 11935426 11935538 4.110000e-38 171.0
45 TraesCS7D01G276100 chr2A 95.146 103 5 0 5267 5369 459002734 459002836 6.880000e-36 163.0
46 TraesCS7D01G276100 chr2A 87.200 125 9 1 4481 4605 458977057 458977174 1.500000e-27 135.0
47 TraesCS7D01G276100 chr1D 91.071 112 10 0 5267 5378 143554063 143554174 1.490000e-32 152.0
48 TraesCS7D01G276100 chr1D 82.524 103 14 4 5396 5495 437419890 437419789 4.260000e-13 87.9
49 TraesCS7D01G276100 chr3A 78.981 157 22 8 4214 4367 57228374 57228522 7.070000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G276100 chr7D 264737554 264746113 8559 False 7603.5 11352 100.0000 1 8560 2 chr7D.!!$F2 8559
1 TraesCS7D01G276100 chr7B 245058772 245065257 6485 False 2017.4 4154 93.9390 732 8558 5 chr7B.!!$F1 7826
2 TraesCS7D01G276100 chr7A 288875411 288883134 7723 False 1157.0 2065 94.6080 1 8198 9 chr7A.!!$F3 8197
3 TraesCS7D01G276100 chr7A 449709844 449710460 616 False 909.0 909 93.3660 3043 3656 1 chr7A.!!$F1 613
4 TraesCS7D01G276100 chr7A 571327849 571328483 634 False 553.0 553 82.6290 98 726 1 chr7A.!!$F2 628
5 TraesCS7D01G276100 chr6D 114174704 114175610 906 False 1557.0 1557 97.6850 4482 5387 1 chr6D.!!$F1 905
6 TraesCS7D01G276100 chr6D 7525764 7526748 984 False 225.0 274 91.8905 4476 5379 2 chr6D.!!$F2 903
7 TraesCS7D01G276100 chr4A 607474620 607475496 876 False 1175.0 1175 90.7260 4486 5379 1 chr4A.!!$F2 893
8 TraesCS7D01G276100 chr4A 564974589 564975216 627 True 566.0 566 83.1760 101 726 1 chr4A.!!$R1 625
9 TraesCS7D01G276100 chr5A 641406285 641406901 616 False 904.0 904 93.2040 3043 3656 1 chr5A.!!$F2 613
10 TraesCS7D01G276100 chr5A 2115949 2116658 709 True 750.0 750 85.8520 5 724 1 chr5A.!!$R1 719
11 TraesCS7D01G276100 chr5A 550645238 550646037 799 False 379.0 379 75.7320 6432 7235 1 chr5A.!!$F1 803
12 TraesCS7D01G276100 chr6B 693041032 693041718 686 True 756.0 756 86.7240 1 684 1 chr6B.!!$R1 683
13 TraesCS7D01G276100 chr5B 4544517 4545208 691 False 752.0 752 86.3380 5 709 1 chr5B.!!$F1 704
14 TraesCS7D01G276100 chr5B 530232643 530233475 832 False 366.0 366 75.1750 6432 7272 1 chr5B.!!$F2 840
15 TraesCS7D01G276100 chr5D 238134258 238134853 595 True 649.0 649 86.4240 54 651 1 chr5D.!!$R1 597
16 TraesCS7D01G276100 chr5D 436190802 436191327 525 False 339.0 339 78.5580 6432 6967 1 chr5D.!!$F1 535
17 TraesCS7D01G276100 chr2B 20700721 20701385 664 True 468.0 468 79.8530 2 665 1 chr2B.!!$R1 663
18 TraesCS7D01G276100 chr2B 498297630 498298500 870 False 363.5 459 87.6560 4481 5379 2 chr2B.!!$F1 898
19 TraesCS7D01G276100 chr2D 4595023 4595644 621 False 455.0 455 80.2220 64 684 1 chr2D.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1013 0.029035 ACTCGCCGTACGCTTGATAG 59.971 55.000 10.49 3.47 43.23 2.08 F
1628 1800 0.914644 AGCTATTTGGCTGAGCTCCA 59.085 50.000 12.15 0.00 42.97 3.86 F
1880 2054 1.242076 CTGCAGAAAGGTGGTTGGAG 58.758 55.000 8.42 0.00 0.00 3.86 F
1968 2142 3.836949 CAAGTTTCTTGGTGCGCAATAT 58.163 40.909 14.00 0.00 0.00 1.28 F
2531 2713 4.684724 ACAGAGAACAGGGGTAAGACATA 58.315 43.478 0.00 0.00 0.00 2.29 F
3722 4011 1.298563 CGTGTGTTGCCTGCACTTG 60.299 57.895 0.00 0.00 37.70 3.16 F
4624 4916 1.992557 ACTACCAGCAAAGGGAATCCA 59.007 47.619 0.09 0.00 34.83 3.41 F
6155 6920 1.267574 CCCCTGCTGCTCCTCACTTA 61.268 60.000 0.00 0.00 0.00 2.24 F
6392 7163 0.102844 TGCTGTGCACTCCTTTTTGC 59.897 50.000 19.41 9.47 39.33 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 2599 0.383949 TTTGAAACACTTCAGGCGGC 59.616 50.000 0.00 0.00 42.48 6.53 R
2531 2713 0.604578 GGAACATGTGGCAGTTGCAT 59.395 50.000 0.00 0.00 44.36 3.96 R
3135 3332 0.899720 CGGGAGGTGCCTAACTGTTA 59.100 55.000 0.00 0.00 36.66 2.41 R
3224 3511 2.724454 AGAGACGCTCCTAAGCTTACA 58.276 47.619 0.86 0.00 46.91 2.41 R
4124 4416 1.141185 AATAGGGGGCTACAGCTTCC 58.859 55.000 0.54 3.72 41.70 3.46 R
4912 5266 1.480954 GAGCTTGGTGGTCGGAAGATA 59.519 52.381 0.00 0.00 45.19 1.98 R
6366 7137 0.895100 GGAGTGCACAGCAATTGGGA 60.895 55.000 21.04 0.00 41.47 4.37 R
7268 8245 0.474614 TGGTCGGTGTTTTGGGATCA 59.525 50.000 0.00 0.00 0.00 2.92 R
8272 9598 0.036164 TGGTGGAGTCGGGTTTCATG 59.964 55.000 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
314 337 1.271840 TAGAACGCTTGGCCCCAGAT 61.272 55.000 0.00 0.00 0.00 2.90
337 360 8.109634 AGATAAATTGACACAACTTCCTATGGT 58.890 33.333 0.00 0.00 0.00 3.55
361 386 8.947115 GGTTTAGTTTCTGTAAGCTACATGAAT 58.053 33.333 0.00 0.00 38.15 2.57
487 524 3.291584 TCATTCATCGGTCTAGCTGAGT 58.708 45.455 0.00 0.00 35.67 3.41
697 743 6.542821 TGACATAGTCTGATTGTTTTTCCCT 58.457 36.000 0.00 0.00 33.15 4.20
711 759 1.340088 TTCCCTGTTGCAATGCACAT 58.660 45.000 7.72 0.00 38.71 3.21
721 769 5.811100 TGTTGCAATGCACATACATATTTGG 59.189 36.000 7.72 0.00 38.71 3.28
729 780 5.588246 TGCACATACATATTTGGTAGTGTGG 59.412 40.000 0.00 0.00 34.50 4.17
751 802 3.367292 GGATAAACTACGGACACGGTTGA 60.367 47.826 0.00 0.00 46.48 3.18
811 960 0.868406 GACACGAGTGGCAGAAAAGG 59.132 55.000 3.88 0.00 38.82 3.11
863 1013 0.029035 ACTCGCCGTACGCTTGATAG 59.971 55.000 10.49 3.47 43.23 2.08
927 1077 3.250323 CATGTCGCCGCTGTCTCG 61.250 66.667 0.00 0.00 0.00 4.04
985 1135 2.506061 CCTGCCCTGAGATCTCCGG 61.506 68.421 22.75 22.75 34.26 5.14
1197 1359 1.134580 CATGCTCTGGTACTCCACTGG 60.135 57.143 0.00 0.00 39.03 4.00
1219 1381 2.188817 ACCCCTACTTGCTTCTACCTG 58.811 52.381 0.00 0.00 0.00 4.00
1229 1391 2.288825 TGCTTCTACCTGTTCCTTCACG 60.289 50.000 0.00 0.00 0.00 4.35
1479 1651 7.390440 TGTTTGGTGGAGTATTGACTTAATGAG 59.610 37.037 0.00 0.00 35.45 2.90
1518 1690 3.274288 CTCCTGTCTTTGTAGCCAATCC 58.726 50.000 0.00 0.00 0.00 3.01
1520 1692 3.012518 CCTGTCTTTGTAGCCAATCCTG 58.987 50.000 0.00 0.00 0.00 3.86
1628 1800 0.914644 AGCTATTTGGCTGAGCTCCA 59.085 50.000 12.15 0.00 42.97 3.86
1880 2054 1.242076 CTGCAGAAAGGTGGTTGGAG 58.758 55.000 8.42 0.00 0.00 3.86
1968 2142 3.836949 CAAGTTTCTTGGTGCGCAATAT 58.163 40.909 14.00 0.00 0.00 1.28
2531 2713 4.684724 ACAGAGAACAGGGGTAAGACATA 58.315 43.478 0.00 0.00 0.00 2.29
2646 2836 7.123847 ACCCTACTGTCTTAATACGTCTCATTT 59.876 37.037 0.00 0.00 0.00 2.32
2901 3092 8.840321 ACTTATTGATACACATATGCCAACTTC 58.160 33.333 1.58 0.00 0.00 3.01
3015 3206 6.432162 AGCGTGCAAATATGGATCATATCTTT 59.568 34.615 0.00 0.00 36.20 2.52
3135 3332 9.167311 CTTTGAACAGTATAGGCTAATTCTGTT 57.833 33.333 26.54 26.54 44.92 3.16
3224 3511 9.034544 GTCTCTGCAATTTTATTTTGAAAGTGT 57.965 29.630 0.00 0.00 35.28 3.55
3249 3536 3.992260 GCTTAGGAGCGTCTCTTCATA 57.008 47.619 6.78 0.00 39.48 2.15
3339 3628 5.769662 TGCCCATTATCCTGATTAATGTGTC 59.230 40.000 0.00 0.00 31.29 3.67
3515 3804 8.909708 TGTTTTTAAGAAGACTGAAATGTGTG 57.090 30.769 0.00 0.00 0.00 3.82
3722 4011 1.298563 CGTGTGTTGCCTGCACTTG 60.299 57.895 0.00 0.00 37.70 3.16
3785 4074 9.490663 GTTACTGACATAAGTTATTTGATGTGC 57.509 33.333 0.00 0.00 32.75 4.57
3823 4112 4.550076 AGCCTACTATGCATCCTCATTC 57.450 45.455 0.19 0.00 0.00 2.67
3856 4145 2.079170 TGTGAAACAGGGGCATTTCA 57.921 45.000 0.00 0.00 45.67 2.69
3935 4227 9.477484 GAGTATGTACATAAAACAGGAGTATGG 57.523 37.037 17.07 0.00 30.89 2.74
4124 4416 6.144402 ACTGCTTCATTTTGTTAGCATTTTCG 59.856 34.615 0.00 0.00 42.21 3.46
4300 4592 2.708051 TCTGATCTGCAAAAGCTGAGG 58.292 47.619 0.00 0.00 0.00 3.86
4418 4710 4.725790 ATTGCTCTTCATTTAAGGTGCC 57.274 40.909 0.00 0.00 35.58 5.01
4484 4776 3.434984 GCCAAGTGAGAGAAAGCTTACTG 59.565 47.826 0.00 0.00 35.25 2.74
4624 4916 1.992557 ACTACCAGCAAAGGGAATCCA 59.007 47.619 0.09 0.00 34.83 3.41
4995 5349 4.027755 CGGATATGACGCCACCAC 57.972 61.111 0.00 0.00 0.00 4.16
5564 6269 9.778741 TTGATATGAGTCAAAACAGTTTAGAGT 57.221 29.630 0.00 0.00 35.31 3.24
5578 6283 4.096081 AGTTTAGAGTACAAGGATCGGTCG 59.904 45.833 0.00 0.00 0.00 4.79
5683 6389 6.183360 GGAACACCCTAATTGAGCATAGTCTA 60.183 42.308 0.00 0.00 0.00 2.59
5684 6390 6.163135 ACACCCTAATTGAGCATAGTCTAC 57.837 41.667 0.00 0.00 0.00 2.59
5691 6397 1.573857 TGAGCATAGTCTACAGGGGGA 59.426 52.381 0.00 0.00 0.00 4.81
5705 6411 2.308866 CAGGGGGAATGTACAAAGGAGT 59.691 50.000 0.00 0.00 0.00 3.85
5706 6412 2.308866 AGGGGGAATGTACAAAGGAGTG 59.691 50.000 0.00 0.00 0.00 3.51
5713 6419 4.559862 ATGTACAAAGGAGTGAAGGGAG 57.440 45.455 0.00 0.00 0.00 4.30
5723 6429 6.226272 AGGAGTGAAGGGAGATGTCTATAT 57.774 41.667 0.00 0.00 0.00 0.86
5725 6431 5.186797 GGAGTGAAGGGAGATGTCTATATGG 59.813 48.000 0.00 0.00 0.00 2.74
5727 6433 5.777732 AGTGAAGGGAGATGTCTATATGGTC 59.222 44.000 0.00 0.00 0.00 4.02
5728 6434 5.540337 GTGAAGGGAGATGTCTATATGGTCA 59.460 44.000 0.00 0.00 0.00 4.02
5739 6450 6.867550 TGTCTATATGGTCAAACACTCTCTG 58.132 40.000 0.00 0.00 0.00 3.35
5846 6611 3.973305 TCATGCCACCTATAAGTGATGGA 59.027 43.478 2.89 0.00 40.34 3.41
5851 6616 6.194235 TGCCACCTATAAGTGATGGAAAAAT 58.806 36.000 2.89 0.00 40.34 1.82
5891 6656 2.850321 CGTTCCGGATGTGTTTTGATG 58.150 47.619 4.15 0.00 0.00 3.07
5911 6676 1.978542 GCTAGAAAGCGTTCGACAGA 58.021 50.000 6.74 0.00 39.39 3.41
6155 6920 1.267574 CCCCTGCTGCTCCTCACTTA 61.268 60.000 0.00 0.00 0.00 2.24
6171 6936 3.998341 TCACTTAAGGAAAAATCGTCCGG 59.002 43.478 7.53 0.00 40.36 5.14
6391 7162 2.582728 TTGCTGTGCACTCCTTTTTG 57.417 45.000 19.41 0.00 38.71 2.44
6392 7163 0.102844 TGCTGTGCACTCCTTTTTGC 59.897 50.000 19.41 9.47 39.33 3.68
6394 7165 3.922175 GTGCACTCCTTTTTGCGC 58.078 55.556 10.32 0.00 41.96 6.09
6415 7186 5.695818 CGCGGGGATATTTAGTTTTAATGG 58.304 41.667 0.00 0.00 0.00 3.16
6447 7218 1.811965 TGTGATGCCAGATTTGAACCG 59.188 47.619 0.00 0.00 0.00 4.44
6776 7551 2.631160 TATATGGTGGGGCAAAGACG 57.369 50.000 0.00 0.00 0.00 4.18
6797 7572 1.261938 TAGCACCCCTGAAAGCGCTA 61.262 55.000 12.05 0.00 0.00 4.26
7020 7795 7.624360 TGTCATCATGGTTTTCCTTGTATAC 57.376 36.000 0.00 0.00 43.16 1.47
7413 8390 1.081376 AGTGCGGAAGAAGACGACG 60.081 57.895 0.00 0.00 0.00 5.12
7653 8634 7.044798 TGCCCCTTTAAATGTACATATTTTGC 58.955 34.615 9.21 5.79 32.79 3.68
7699 8683 5.422650 CCCCTTTCTACTCTAGTTAGCTTGT 59.577 44.000 0.00 0.00 0.00 3.16
7706 8690 9.902684 TTCTACTCTAGTTAGCTTGTAGTGTAT 57.097 33.333 0.00 0.00 32.02 2.29
7756 9072 2.512301 GCTGTGCGCTGATCTCGTC 61.512 63.158 9.73 3.74 35.14 4.20
7780 9096 5.178623 CGAGTTTGTAATGTGTGTGGTATGT 59.821 40.000 0.00 0.00 0.00 2.29
7814 9132 6.197468 GCGCTTGTTTGTGTTTTATTCACTTA 59.803 34.615 0.00 0.00 36.83 2.24
7890 9208 1.940883 ATGGGCATTTGAGCAGCACG 61.941 55.000 0.00 0.00 33.47 5.34
7961 9279 6.147164 TCTGTCCGATCAACTTGTTTATGAAC 59.853 38.462 0.00 0.00 36.29 3.18
8002 9320 3.802948 TCTAGAATTCTTGTCGCCTCC 57.197 47.619 14.36 0.00 0.00 4.30
8025 9343 1.737793 CGGAGGTTCTACAAATGCCAC 59.262 52.381 0.00 0.00 0.00 5.01
8035 9353 3.691049 ACAAATGCCACGCACATATAC 57.309 42.857 0.00 0.00 43.04 1.47
8036 9354 2.031560 ACAAATGCCACGCACATATACG 59.968 45.455 0.00 0.00 43.04 3.06
8037 9355 0.586319 AATGCCACGCACATATACGC 59.414 50.000 0.00 0.00 43.04 4.42
8038 9356 0.531753 ATGCCACGCACATATACGCA 60.532 50.000 0.00 0.00 43.04 5.24
8039 9357 0.531753 TGCCACGCACATATACGCAT 60.532 50.000 0.00 0.00 31.71 4.73
8040 9358 1.269831 TGCCACGCACATATACGCATA 60.270 47.619 0.00 0.00 31.71 3.14
8041 9359 1.390123 GCCACGCACATATACGCATAG 59.610 52.381 0.00 0.00 0.00 2.23
8048 9366 7.359681 CCACGCACATATACGCATAGAAATAAA 60.360 37.037 0.00 0.00 0.00 1.40
8079 9397 1.335324 GCAGCCGATGAAATATGGTGC 60.335 52.381 0.00 0.00 41.81 5.01
8096 9414 1.083489 TGCGTTCTTTTGATAGCCCG 58.917 50.000 0.00 0.00 32.65 6.13
8183 9509 0.109913 TCGGAGCCTTATCCTAGCGA 59.890 55.000 0.00 0.00 37.20 4.93
8208 9534 0.319555 TCTTCGCTTCCGTTCCACAG 60.320 55.000 0.00 0.00 35.54 3.66
8218 9544 5.681437 GCTTCCGTTCCACAGTATAAGATCA 60.681 44.000 0.00 0.00 0.00 2.92
8220 9546 6.479972 TCCGTTCCACAGTATAAGATCATT 57.520 37.500 0.00 0.00 0.00 2.57
8221 9547 6.884832 TCCGTTCCACAGTATAAGATCATTT 58.115 36.000 0.00 0.00 0.00 2.32
8222 9548 7.335627 TCCGTTCCACAGTATAAGATCATTTT 58.664 34.615 0.00 0.00 0.00 1.82
8223 9549 7.827236 TCCGTTCCACAGTATAAGATCATTTTT 59.173 33.333 0.00 0.00 0.00 1.94
8266 9592 6.613755 AAAACGATTATTATTGGACGGAGG 57.386 37.500 0.00 0.00 0.00 4.30
8267 9593 4.267349 ACGATTATTATTGGACGGAGGG 57.733 45.455 0.00 0.00 0.00 4.30
8268 9594 3.899360 ACGATTATTATTGGACGGAGGGA 59.101 43.478 0.00 0.00 0.00 4.20
8269 9595 4.021368 ACGATTATTATTGGACGGAGGGAG 60.021 45.833 0.00 0.00 0.00 4.30
8270 9596 4.021368 CGATTATTATTGGACGGAGGGAGT 60.021 45.833 0.00 0.00 0.00 3.85
8271 9597 5.184479 CGATTATTATTGGACGGAGGGAGTA 59.816 44.000 0.00 0.00 0.00 2.59
8272 9598 5.796424 TTATTATTGGACGGAGGGAGTAC 57.204 43.478 0.00 0.00 0.00 2.73
8273 9599 2.832643 TATTGGACGGAGGGAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
8274 9600 2.176247 ATTGGACGGAGGGAGTACAT 57.824 50.000 0.00 0.00 31.71 2.29
8275 9601 1.191535 TTGGACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 31.71 3.21
8276 9602 0.333652 TGGACGGAGGGAGTACATGA 59.666 55.000 0.00 0.00 0.00 3.07
8277 9603 1.272816 TGGACGGAGGGAGTACATGAA 60.273 52.381 0.00 0.00 0.00 2.57
8278 9604 1.829222 GGACGGAGGGAGTACATGAAA 59.171 52.381 0.00 0.00 0.00 2.69
8279 9605 2.418334 GGACGGAGGGAGTACATGAAAC 60.418 54.545 0.00 0.00 0.00 2.78
8280 9606 1.553704 ACGGAGGGAGTACATGAAACC 59.446 52.381 0.00 0.00 0.00 3.27
8281 9607 1.134491 CGGAGGGAGTACATGAAACCC 60.134 57.143 0.00 6.81 40.71 4.11
8282 9608 1.134491 GGAGGGAGTACATGAAACCCG 60.134 57.143 0.00 0.00 44.57 5.28
8283 9609 1.829222 GAGGGAGTACATGAAACCCGA 59.171 52.381 0.00 0.00 44.57 5.14
8284 9610 1.553704 AGGGAGTACATGAAACCCGAC 59.446 52.381 0.00 0.00 44.57 4.79
8285 9611 1.553704 GGGAGTACATGAAACCCGACT 59.446 52.381 0.00 0.00 0.00 4.18
8286 9612 2.418334 GGGAGTACATGAAACCCGACTC 60.418 54.545 0.00 0.57 33.99 3.36
8287 9613 2.418334 GGAGTACATGAAACCCGACTCC 60.418 54.545 0.00 3.29 44.44 3.85
8288 9614 2.232941 GAGTACATGAAACCCGACTCCA 59.767 50.000 0.00 0.00 0.00 3.86
8289 9615 2.028385 AGTACATGAAACCCGACTCCAC 60.028 50.000 0.00 0.00 0.00 4.02
8290 9616 0.036306 ACATGAAACCCGACTCCACC 59.964 55.000 0.00 0.00 0.00 4.61
8291 9617 0.036164 CATGAAACCCGACTCCACCA 59.964 55.000 0.00 0.00 0.00 4.17
8292 9618 0.324943 ATGAAACCCGACTCCACCAG 59.675 55.000 0.00 0.00 0.00 4.00
8305 9631 5.336531 CGACTCCACCAGTACAATAGAAACT 60.337 44.000 0.00 0.00 34.41 2.66
8306 9632 6.127814 CGACTCCACCAGTACAATAGAAACTA 60.128 42.308 0.00 0.00 34.41 2.24
8315 9641 7.644551 CCAGTACAATAGAAACTAAGCTACTCG 59.355 40.741 0.00 0.00 0.00 4.18
8316 9642 7.166142 CAGTACAATAGAAACTAAGCTACTCGC 59.834 40.741 0.00 0.00 39.57 5.03
8317 9643 5.035443 ACAATAGAAACTAAGCTACTCGCG 58.965 41.667 0.00 0.00 45.59 5.87
8318 9644 1.910688 AGAAACTAAGCTACTCGCGC 58.089 50.000 0.00 0.00 45.59 6.86
8319 9645 1.473278 AGAAACTAAGCTACTCGCGCT 59.527 47.619 5.56 0.00 45.59 5.92
8320 9646 1.847390 GAAACTAAGCTACTCGCGCTC 59.153 52.381 5.56 0.00 45.59 5.03
8321 9647 0.248134 AACTAAGCTACTCGCGCTCG 60.248 55.000 5.56 0.00 45.59 5.03
8322 9648 2.006587 CTAAGCTACTCGCGCTCGC 61.007 63.158 5.56 3.90 45.59 5.03
8323 9649 3.465296 TAAGCTACTCGCGCTCGCC 62.465 63.158 5.56 0.00 45.59 5.54
8346 9672 3.737172 CGCCCAAGCCCTGAAACG 61.737 66.667 0.00 0.00 34.57 3.60
8369 9695 3.146618 TCAGCTCCGACGAGTATTTTC 57.853 47.619 0.00 0.00 38.49 2.29
8374 9700 3.314635 GCTCCGACGAGTATTTTCTCCTA 59.685 47.826 0.00 0.00 38.49 2.94
8375 9701 4.201990 GCTCCGACGAGTATTTTCTCCTAA 60.202 45.833 0.00 0.00 38.49 2.69
8408 9734 1.168714 GCCTGGATTGCGTTCTCTTT 58.831 50.000 0.00 0.00 0.00 2.52
8418 9744 2.612212 TGCGTTCTCTTTGAGGTTGAAC 59.388 45.455 0.00 0.00 35.17 3.18
8426 9762 6.620678 TCTCTTTGAGGTTGAACAAAACAAG 58.379 36.000 0.00 0.00 35.95 3.16
8472 9811 5.109903 GTCCAAGGTAGCACTACACTATTG 58.890 45.833 9.87 8.18 37.78 1.90
8513 9852 1.135489 TGTAGGACGCTTGTAGCTTCG 60.135 52.381 0.00 0.00 40.03 3.79
8540 9879 3.586618 AGATTCTTGCTCCTCTTTGTCCT 59.413 43.478 0.00 0.00 0.00 3.85
8542 9881 4.974645 TTCTTGCTCCTCTTTGTCCTTA 57.025 40.909 0.00 0.00 0.00 2.69
8546 9885 3.786553 TGCTCCTCTTTGTCCTTACCTA 58.213 45.455 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 213 8.637986 CCTAAAAGAGCTCTATCTAAGTGATGT 58.362 37.037 18.59 0.00 36.65 3.06
297 318 0.393808 TTATCTGGGGCCAAGCGTTC 60.394 55.000 4.39 0.00 0.00 3.95
314 337 8.472007 AAACCATAGGAAGTTGTGTCAATTTA 57.528 30.769 0.00 0.00 0.00 1.40
487 524 3.370840 AGCTGCATTGATGAACCCTAA 57.629 42.857 1.02 0.00 0.00 2.69
519 556 8.736244 TCCTAAGGCGCCATAATAAAATATTTC 58.264 33.333 31.54 0.00 0.00 2.17
666 711 8.918202 AAACAATCAGACTATGTCAAGGTAAA 57.082 30.769 0.46 0.00 34.60 2.01
670 715 7.308435 GGAAAAACAATCAGACTATGTCAAGG 58.692 38.462 0.46 0.00 34.60 3.61
697 743 5.811100 CCAAATATGTATGTGCATTGCAACA 59.189 36.000 13.94 14.56 41.47 3.33
711 759 8.774183 AGTTTATCCCACACTACCAAATATGTA 58.226 33.333 0.00 0.00 0.00 2.29
721 769 4.158394 TGTCCGTAGTTTATCCCACACTAC 59.842 45.833 0.00 0.00 39.63 2.73
729 780 2.925563 CAACCGTGTCCGTAGTTTATCC 59.074 50.000 0.00 0.00 0.00 2.59
751 802 5.277490 CGGTACAAGATGCAAAATCATCGAT 60.277 40.000 0.00 0.00 45.57 3.59
811 960 1.594862 CTGGATCGCGGTTTTGATCTC 59.405 52.381 6.13 0.00 40.63 2.75
985 1135 2.049433 CATATCGGGTCCGGCGAC 60.049 66.667 9.30 4.52 40.25 5.19
998 1148 4.626081 GGCGCGGCAGGACCATAT 62.626 66.667 29.32 0.00 39.03 1.78
1197 1359 3.132467 CAGGTAGAAGCAAGTAGGGGTAC 59.868 52.174 0.00 0.00 0.00 3.34
1219 1381 2.420722 AGATCGAGAGACGTGAAGGAAC 59.579 50.000 0.00 0.00 46.97 3.62
1229 1391 2.286536 GCCACGAGTTAGATCGAGAGAC 60.287 54.545 2.78 0.00 46.97 3.36
1479 1651 0.798776 AGCAATGCAGCGTACTCAAC 59.201 50.000 8.35 0.00 40.15 3.18
1518 1690 5.314923 AGCAATAACCACATAAACTGCAG 57.685 39.130 13.48 13.48 0.00 4.41
1520 1692 8.702163 ATTAAAGCAATAACCACATAAACTGC 57.298 30.769 0.00 0.00 0.00 4.40
1654 1826 0.734889 ACGCTGGAGCATGCAAATAC 59.265 50.000 21.98 0.00 42.21 1.89
1880 2054 2.581354 AGAGGCCATCTGTCGCAC 59.419 61.111 5.01 0.00 36.69 5.34
2415 2597 2.966309 GAAACACTTCAGGCGGCGG 61.966 63.158 9.78 1.99 0.00 6.13
2416 2598 1.781025 TTGAAACACTTCAGGCGGCG 61.781 55.000 0.51 0.51 42.48 6.46
2417 2599 0.383949 TTTGAAACACTTCAGGCGGC 59.616 50.000 0.00 0.00 42.48 6.53
2531 2713 0.604578 GGAACATGTGGCAGTTGCAT 59.395 50.000 0.00 0.00 44.36 3.96
2621 2810 6.636562 ATGAGACGTATTAAGACAGTAGGG 57.363 41.667 0.56 0.00 0.00 3.53
2646 2836 5.730296 AACTCAAGCTCTAGCACTAAGAA 57.270 39.130 4.54 0.00 45.16 2.52
2703 2893 3.473113 ACCCTTGGTATTTTGGAGCAT 57.527 42.857 0.00 0.00 32.11 3.79
2894 3084 3.157932 TCAAAAACGCAAGGAAGTTGG 57.842 42.857 0.00 0.00 46.39 3.77
2901 3092 7.239972 TCTTTTCAAATTTCAAAAACGCAAGG 58.760 30.769 1.55 0.00 46.39 3.61
3135 3332 0.899720 CGGGAGGTGCCTAACTGTTA 59.100 55.000 0.00 0.00 36.66 2.41
3224 3511 2.724454 AGAGACGCTCCTAAGCTTACA 58.276 47.619 0.86 0.00 46.91 2.41
3238 3525 6.754209 AGTTAGCTGTGAAATATGAAGAGACG 59.246 38.462 0.00 0.00 0.00 4.18
3339 3628 6.766944 ACAGCATCAATTATCTGAGAAGAAGG 59.233 38.462 0.00 0.00 0.00 3.46
3515 3804 6.806739 GCAGAGAAATGGTATAAACACAAACC 59.193 38.462 0.00 0.00 0.00 3.27
3785 4074 6.051717 AGTAGGCTAATGCAAGTGATAACAG 58.948 40.000 0.00 0.00 41.91 3.16
3823 4112 4.000325 TGTTTCACAGTTCATACCATCCG 59.000 43.478 0.00 0.00 0.00 4.18
3847 4136 5.411361 TCGTATACTTGCATATGAAATGCCC 59.589 40.000 6.97 0.00 43.94 5.36
3856 4145 4.324267 GGGCCTTTCGTATACTTGCATAT 58.676 43.478 0.84 0.00 0.00 1.78
3925 4217 3.287867 AATGCCTTGTCCATACTCCTG 57.712 47.619 0.00 0.00 0.00 3.86
3935 4227 3.674997 TGGAGTCTACAAATGCCTTGTC 58.325 45.455 4.66 0.00 45.50 3.18
4019 4311 6.493449 TGAAAAACAATATGATCACGCAGA 57.507 33.333 0.00 0.00 0.00 4.26
4096 4388 9.492973 AAAATGCTAACAAAATGAAGCAGTAAT 57.507 25.926 14.10 5.80 40.84 1.89
4102 4394 5.633182 TCCGAAAATGCTAACAAAATGAAGC 59.367 36.000 0.00 0.00 33.03 3.86
4124 4416 1.141185 AATAGGGGGCTACAGCTTCC 58.859 55.000 0.54 3.72 41.70 3.46
4212 4504 2.089980 CCTGCATCAGGTGAAAGAAGG 58.910 52.381 4.74 0.00 45.82 3.46
4300 4592 3.334691 TGCATGGTAGTTAACTCTGCAC 58.665 45.455 21.48 12.24 39.16 4.57
4418 4710 6.916440 TGAATCATGAGAATTTGAAGTGTGG 58.084 36.000 0.09 0.00 0.00 4.17
4484 4776 2.049435 CCCAAACAAAGGCCACCTC 58.951 57.895 5.01 0.00 30.89 3.85
4624 4916 4.495349 CGAATCATCAAAATCGCTGCTTCT 60.495 41.667 0.00 0.00 0.00 2.85
4912 5266 1.480954 GAGCTTGGTGGTCGGAAGATA 59.519 52.381 0.00 0.00 45.19 1.98
5482 6187 6.046286 ACCTAATACTCCCTCCTTTCCAAAAA 59.954 38.462 0.00 0.00 0.00 1.94
5578 6283 3.866582 CTCATCCCCAGCCCGGTC 61.867 72.222 0.00 0.00 0.00 4.79
5683 6389 2.308866 CTCCTTTGTACATTCCCCCTGT 59.691 50.000 0.00 0.00 0.00 4.00
5684 6390 2.308866 ACTCCTTTGTACATTCCCCCTG 59.691 50.000 0.00 0.00 0.00 4.45
5691 6397 4.597507 TCTCCCTTCACTCCTTTGTACATT 59.402 41.667 0.00 0.00 0.00 2.71
5705 6411 5.715921 TGACCATATAGACATCTCCCTTCA 58.284 41.667 0.00 0.00 0.00 3.02
5706 6412 6.672266 TTGACCATATAGACATCTCCCTTC 57.328 41.667 0.00 0.00 0.00 3.46
5713 6419 7.651304 CAGAGAGTGTTTGACCATATAGACATC 59.349 40.741 0.00 0.00 0.00 3.06
5723 6429 1.131638 AGGCAGAGAGTGTTTGACCA 58.868 50.000 0.00 0.00 0.00 4.02
5725 6431 8.718102 TTATTATTAGGCAGAGAGTGTTTGAC 57.282 34.615 0.00 0.00 0.00 3.18
5846 6611 3.317993 CCTGAGGACGTTGAACCATTTTT 59.682 43.478 0.00 0.00 0.00 1.94
5851 6616 1.070786 GCCTGAGGACGTTGAACCA 59.929 57.895 0.65 0.00 0.00 3.67
5891 6656 0.992802 CTGTCGAACGCTTTCTAGCC 59.007 55.000 1.12 0.00 44.86 3.93
5911 6676 1.131638 TCAGAGCCAGAGGTGTTTGT 58.868 50.000 0.00 0.00 0.00 2.83
6140 6905 1.644509 TCCTTAAGTGAGGAGCAGCA 58.355 50.000 0.97 0.00 40.87 4.41
6155 6920 1.165270 CAGCCGGACGATTTTTCCTT 58.835 50.000 5.05 0.00 0.00 3.36
6171 6936 6.503524 TGATTTTAGTTGTCAGAAAACCAGC 58.496 36.000 0.00 0.00 0.00 4.85
6366 7137 0.895100 GGAGTGCACAGCAATTGGGA 60.895 55.000 21.04 0.00 41.47 4.37
6391 7162 4.816786 TTAAAACTAAATATCCCCGCGC 57.183 40.909 0.00 0.00 0.00 6.86
6392 7163 5.239963 ACCATTAAAACTAAATATCCCCGCG 59.760 40.000 0.00 0.00 0.00 6.46
6394 7165 7.283580 TGACACCATTAAAACTAAATATCCCCG 59.716 37.037 0.00 0.00 0.00 5.73
6415 7186 3.715495 TGGCATCACAAAACATTGACAC 58.285 40.909 0.00 0.00 0.00 3.67
6447 7218 2.363359 CCCAGAAAAGGCAAGCATATCC 59.637 50.000 0.00 0.00 0.00 2.59
6776 7551 1.923227 GCGCTTTCAGGGGTGCTAAC 61.923 60.000 0.00 0.00 36.23 2.34
6797 7572 6.091076 TCTTTGGTATGAAGATTGGGGAAT 57.909 37.500 0.00 0.00 0.00 3.01
7020 7795 7.517417 GCATGGTCAGAACTAACATTAGATTCG 60.517 40.741 5.66 3.88 34.84 3.34
7268 8245 0.474614 TGGTCGGTGTTTTGGGATCA 59.525 50.000 0.00 0.00 0.00 2.92
7318 8295 0.834612 CCTACCCTCGGTGCCATTAA 59.165 55.000 0.00 0.00 36.19 1.40
7413 8390 2.263945 GTCTTCTTTCTCCACGCTAGC 58.736 52.381 4.06 4.06 0.00 3.42
7420 8397 4.023107 CACTAGTGTCGTCTTCTTTCTCCA 60.023 45.833 15.06 0.00 0.00 3.86
7653 8634 3.365565 GGTGGGTTATTTTACACAGCACG 60.366 47.826 3.57 0.00 46.44 5.34
7699 8683 2.372264 ACGAAAGCCGAGGATACACTA 58.628 47.619 0.00 0.00 41.76 2.74
7706 8690 0.529378 GGACTAACGAAAGCCGAGGA 59.471 55.000 0.00 0.00 41.76 3.71
7756 9072 5.178623 ACATACCACACACATTACAAACTCG 59.821 40.000 0.00 0.00 0.00 4.18
7814 9132 3.766591 CACCACCAGAGAGAGTTACAGAT 59.233 47.826 0.00 0.00 0.00 2.90
7819 9137 3.527507 AGACACCACCAGAGAGAGTTA 57.472 47.619 0.00 0.00 0.00 2.24
7976 9294 4.636206 GGCGACAAGAATTCTAGAACCAAT 59.364 41.667 8.75 0.00 0.00 3.16
7977 9295 4.000988 GGCGACAAGAATTCTAGAACCAA 58.999 43.478 8.75 0.00 0.00 3.67
8002 9320 1.659098 GCATTTGTAGAACCTCCGTCG 59.341 52.381 0.00 0.00 0.00 5.12
8005 9323 1.737793 GTGGCATTTGTAGAACCTCCG 59.262 52.381 0.00 0.00 0.00 4.63
8025 9343 7.506474 TGTTTATTTCTATGCGTATATGTGCG 58.494 34.615 0.00 0.00 36.47 5.34
8035 9353 5.679734 ATCAGGCTGTTTATTTCTATGCG 57.320 39.130 15.27 0.00 0.00 4.73
8036 9354 5.689068 GCAATCAGGCTGTTTATTTCTATGC 59.311 40.000 15.27 6.62 0.00 3.14
8037 9355 6.798482 TGCAATCAGGCTGTTTATTTCTATG 58.202 36.000 15.27 0.07 34.04 2.23
8038 9356 6.460676 GCTGCAATCAGGCTGTTTATTTCTAT 60.461 38.462 15.27 0.00 40.65 1.98
8039 9357 5.163622 GCTGCAATCAGGCTGTTTATTTCTA 60.164 40.000 15.27 0.00 40.65 2.10
8040 9358 4.381292 GCTGCAATCAGGCTGTTTATTTCT 60.381 41.667 15.27 0.00 40.65 2.52
8041 9359 3.861689 GCTGCAATCAGGCTGTTTATTTC 59.138 43.478 15.27 2.40 40.65 2.17
8079 9397 3.001330 GTGATCGGGCTATCAAAAGAACG 59.999 47.826 4.94 0.00 37.61 3.95
8242 9568 6.038936 CCCTCCGTCCAATAATAATCGTTTTT 59.961 38.462 0.00 0.00 0.00 1.94
8243 9569 5.529800 CCCTCCGTCCAATAATAATCGTTTT 59.470 40.000 0.00 0.00 0.00 2.43
8244 9570 5.061179 CCCTCCGTCCAATAATAATCGTTT 58.939 41.667 0.00 0.00 0.00 3.60
8245 9571 4.345837 TCCCTCCGTCCAATAATAATCGTT 59.654 41.667 0.00 0.00 0.00 3.85
8246 9572 3.899360 TCCCTCCGTCCAATAATAATCGT 59.101 43.478 0.00 0.00 0.00 3.73
8247 9573 4.021368 ACTCCCTCCGTCCAATAATAATCG 60.021 45.833 0.00 0.00 0.00 3.34
8248 9574 5.485209 ACTCCCTCCGTCCAATAATAATC 57.515 43.478 0.00 0.00 0.00 1.75
8249 9575 5.842328 TGTACTCCCTCCGTCCAATAATAAT 59.158 40.000 0.00 0.00 0.00 1.28
8250 9576 5.210430 TGTACTCCCTCCGTCCAATAATAA 58.790 41.667 0.00 0.00 0.00 1.40
8251 9577 4.806892 TGTACTCCCTCCGTCCAATAATA 58.193 43.478 0.00 0.00 0.00 0.98
8252 9578 3.649843 TGTACTCCCTCCGTCCAATAAT 58.350 45.455 0.00 0.00 0.00 1.28
8253 9579 3.104519 TGTACTCCCTCCGTCCAATAA 57.895 47.619 0.00 0.00 0.00 1.40
8254 9580 2.832643 TGTACTCCCTCCGTCCAATA 57.167 50.000 0.00 0.00 0.00 1.90
8255 9581 1.762957 CATGTACTCCCTCCGTCCAAT 59.237 52.381 0.00 0.00 0.00 3.16
8256 9582 1.191535 CATGTACTCCCTCCGTCCAA 58.808 55.000 0.00 0.00 0.00 3.53
8257 9583 0.333652 TCATGTACTCCCTCCGTCCA 59.666 55.000 0.00 0.00 0.00 4.02
8258 9584 1.481871 TTCATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
8259 9585 2.418334 GGTTTCATGTACTCCCTCCGTC 60.418 54.545 0.00 0.00 0.00 4.79
8260 9586 1.553704 GGTTTCATGTACTCCCTCCGT 59.446 52.381 0.00 0.00 0.00 4.69
8261 9587 1.134491 GGGTTTCATGTACTCCCTCCG 60.134 57.143 0.00 0.00 35.63 4.63
8262 9588 1.134491 CGGGTTTCATGTACTCCCTCC 60.134 57.143 13.00 0.00 36.30 4.30
8263 9589 1.829222 TCGGGTTTCATGTACTCCCTC 59.171 52.381 13.00 0.00 36.30 4.30
8264 9590 1.553704 GTCGGGTTTCATGTACTCCCT 59.446 52.381 13.00 0.00 36.30 4.20
8265 9591 1.553704 AGTCGGGTTTCATGTACTCCC 59.446 52.381 0.00 0.52 35.22 4.30
8266 9592 2.418334 GGAGTCGGGTTTCATGTACTCC 60.418 54.545 0.00 0.00 44.36 3.85
8267 9593 2.232941 TGGAGTCGGGTTTCATGTACTC 59.767 50.000 0.00 0.00 34.08 2.59
8268 9594 2.028385 GTGGAGTCGGGTTTCATGTACT 60.028 50.000 0.00 0.00 0.00 2.73
8269 9595 2.344025 GTGGAGTCGGGTTTCATGTAC 58.656 52.381 0.00 0.00 0.00 2.90
8270 9596 1.276989 GGTGGAGTCGGGTTTCATGTA 59.723 52.381 0.00 0.00 0.00 2.29
8271 9597 0.036306 GGTGGAGTCGGGTTTCATGT 59.964 55.000 0.00 0.00 0.00 3.21
8272 9598 0.036164 TGGTGGAGTCGGGTTTCATG 59.964 55.000 0.00 0.00 0.00 3.07
8273 9599 0.324943 CTGGTGGAGTCGGGTTTCAT 59.675 55.000 0.00 0.00 0.00 2.57
8274 9600 1.052124 ACTGGTGGAGTCGGGTTTCA 61.052 55.000 0.00 0.00 0.00 2.69
8275 9601 0.971386 TACTGGTGGAGTCGGGTTTC 59.029 55.000 0.00 0.00 35.96 2.78
8276 9602 0.683412 GTACTGGTGGAGTCGGGTTT 59.317 55.000 0.00 0.00 35.96 3.27
8277 9603 0.470456 TGTACTGGTGGAGTCGGGTT 60.470 55.000 0.00 0.00 35.96 4.11
8278 9604 0.470456 TTGTACTGGTGGAGTCGGGT 60.470 55.000 0.00 0.00 35.96 5.28
8279 9605 0.902531 ATTGTACTGGTGGAGTCGGG 59.097 55.000 0.00 0.00 35.96 5.14
8280 9606 3.021695 TCTATTGTACTGGTGGAGTCGG 58.978 50.000 0.00 0.00 35.96 4.79
8281 9607 4.713824 TTCTATTGTACTGGTGGAGTCG 57.286 45.455 0.00 0.00 35.96 4.18
8282 9608 6.038997 AGTTTCTATTGTACTGGTGGAGTC 57.961 41.667 0.00 0.00 35.96 3.36
8283 9609 7.549147 TTAGTTTCTATTGTACTGGTGGAGT 57.451 36.000 0.00 0.00 38.88 3.85
8284 9610 6.535508 GCTTAGTTTCTATTGTACTGGTGGAG 59.464 42.308 0.00 0.00 0.00 3.86
8285 9611 6.212791 AGCTTAGTTTCTATTGTACTGGTGGA 59.787 38.462 0.00 0.00 0.00 4.02
8286 9612 6.407202 AGCTTAGTTTCTATTGTACTGGTGG 58.593 40.000 0.00 0.00 0.00 4.61
8287 9613 8.251721 AGTAGCTTAGTTTCTATTGTACTGGTG 58.748 37.037 0.00 0.00 0.00 4.17
8288 9614 8.363761 AGTAGCTTAGTTTCTATTGTACTGGT 57.636 34.615 0.00 0.00 0.00 4.00
8289 9615 7.644551 CGAGTAGCTTAGTTTCTATTGTACTGG 59.355 40.741 0.00 0.00 0.00 4.00
8290 9616 7.166142 GCGAGTAGCTTAGTTTCTATTGTACTG 59.834 40.741 0.00 0.00 44.04 2.74
8291 9617 7.194962 GCGAGTAGCTTAGTTTCTATTGTACT 58.805 38.462 0.00 0.00 44.04 2.73
8292 9618 6.140422 CGCGAGTAGCTTAGTTTCTATTGTAC 59.860 42.308 0.00 0.00 45.59 2.90
8305 9631 2.024305 GCGAGCGCGAGTAGCTTA 59.976 61.111 15.92 0.00 46.13 3.09
8306 9632 4.856607 GGCGAGCGCGAGTAGCTT 62.857 66.667 15.92 0.00 46.13 3.74
8326 9652 3.567579 TTTCAGGGCTTGGGCGAGG 62.568 63.158 0.00 0.00 39.81 4.63
8332 9658 1.028905 TGAAACGTTTCAGGGCTTGG 58.971 50.000 33.86 0.00 41.88 3.61
8346 9672 2.563471 ATACTCGTCGGAGCTGAAAC 57.437 50.000 0.00 0.00 44.48 2.78
8369 9695 5.526846 CAGGCTGCTCTAAAGATTTTAGGAG 59.473 44.000 0.00 5.79 0.00 3.69
8374 9700 4.307032 TCCAGGCTGCTCTAAAGATTTT 57.693 40.909 9.56 0.00 0.00 1.82
8375 9701 4.516652 ATCCAGGCTGCTCTAAAGATTT 57.483 40.909 9.56 0.00 0.00 2.17
8408 9734 2.828520 TGCCTTGTTTTGTTCAACCTCA 59.171 40.909 0.00 0.00 0.00 3.86
8426 9762 2.501723 TGGAGATTGTAGAGGACTTGCC 59.498 50.000 0.00 0.00 0.00 4.52
8472 9811 6.849085 ACATGGATAGATAGATCACAGGAC 57.151 41.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.