Multiple sequence alignment - TraesCS7D01G275900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G275900 chr7D 100.000 4960 0 0 1 4960 264493298 264488339 0.000000e+00 9160.0
1 TraesCS7D01G275900 chr7D 94.318 88 3 1 2230 2317 116592586 116592501 3.110000e-27 134.0
2 TraesCS7D01G275900 chr7D 83.471 121 19 1 1 121 574771153 574771034 1.460000e-20 111.0
3 TraesCS7D01G275900 chr7B 96.653 2181 48 11 2795 4960 244757525 244755355 0.000000e+00 3600.0
4 TraesCS7D01G275900 chr7B 92.748 1241 45 18 930 2126 244759642 244758403 0.000000e+00 1751.0
5 TraesCS7D01G275900 chr7B 96.569 408 12 2 2319 2726 244758372 244757967 0.000000e+00 675.0
6 TraesCS7D01G275900 chr7B 82.397 267 43 3 65 328 634575869 634575604 3.860000e-56 230.0
7 TraesCS7D01G275900 chr7B 92.391 92 7 0 2232 2323 632792153 632792244 1.120000e-26 132.0
8 TraesCS7D01G275900 chr7B 91.489 94 6 2 4728 4819 239518106 239518013 1.450000e-25 128.0
9 TraesCS7D01G275900 chr7B 96.000 75 3 0 2724 2798 244757697 244757623 6.740000e-24 122.0
10 TraesCS7D01G275900 chr7B 85.470 117 11 4 2228 2343 553217812 553217923 3.140000e-22 117.0
11 TraesCS7D01G275900 chr7B 91.566 83 5 1 2122 2202 566634961 566635043 4.060000e-21 113.0
12 TraesCS7D01G275900 chr7B 88.542 96 4 3 2114 2202 639796294 639796199 5.250000e-20 110.0
13 TraesCS7D01G275900 chr7A 97.626 2064 41 5 2319 4380 288067627 288065570 0.000000e+00 3533.0
14 TraesCS7D01G275900 chr7A 92.141 1247 38 15 939 2126 288068904 288067659 0.000000e+00 1705.0
15 TraesCS7D01G275900 chr7A 97.415 735 17 2 4227 4960 288065572 288064839 0.000000e+00 1251.0
16 TraesCS7D01G275900 chr7A 91.916 569 41 5 3131 3698 548568942 548569506 0.000000e+00 791.0
17 TraesCS7D01G275900 chr7A 89.846 325 33 0 1 325 288202631 288202307 7.680000e-113 418.0
18 TraesCS7D01G275900 chr7A 90.000 150 13 2 500 647 288069751 288069602 5.070000e-45 193.0
19 TraesCS7D01G275900 chr7A 100.000 35 0 0 2199 2233 288067662 288067628 1.150000e-06 65.8
20 TraesCS7D01G275900 chr1D 76.763 624 102 22 150 759 73668206 73668800 4.820000e-80 309.0
21 TraesCS7D01G275900 chr1D 93.407 91 4 1 2231 2321 335585039 335585127 3.110000e-27 134.0
22 TraesCS7D01G275900 chr1D 87.755 98 7 3 2110 2202 345279801 345279704 5.250000e-20 110.0
23 TraesCS7D01G275900 chr1D 77.397 146 31 2 1 145 73318462 73318606 8.850000e-13 86.1
24 TraesCS7D01G275900 chr2A 82.119 302 43 5 3444 3737 55175681 55175383 1.070000e-61 248.0
25 TraesCS7D01G275900 chr2A 88.350 103 8 3 4720 4819 762691430 762691329 2.430000e-23 121.0
26 TraesCS7D01G275900 chr2A 89.474 95 7 2 4729 4821 708044967 708044874 3.140000e-22 117.0
27 TraesCS7D01G275900 chr2D 80.970 268 42 5 3444 3703 54675962 54675696 2.340000e-48 204.0
28 TraesCS7D01G275900 chr2D 81.111 180 28 5 3538 3712 524348779 524348601 6.700000e-29 139.0
29 TraesCS7D01G275900 chr2D 89.583 96 2 4 2119 2207 150380743 150380649 1.130000e-21 115.0
30 TraesCS7D01G275900 chr2B 78.451 297 53 7 3444 3732 85323624 85323331 3.050000e-42 183.0
31 TraesCS7D01G275900 chr2B 83.626 171 27 1 3569 3738 125828358 125828528 5.140000e-35 159.0
32 TraesCS7D01G275900 chr2B 83.230 161 24 2 3568 3727 178528261 178528103 1.440000e-30 145.0
33 TraesCS7D01G275900 chr2B 93.976 83 5 0 4725 4807 200473737 200473655 5.210000e-25 126.0
34 TraesCS7D01G275900 chr2B 100.000 28 0 0 3135 3162 242420245 242420272 9.000000e-03 52.8
35 TraesCS7D01G275900 chr5D 83.851 161 23 2 3567 3727 564952822 564952979 3.090000e-32 150.0
36 TraesCS7D01G275900 chr5B 73.184 537 91 33 62 591 69636976 69637466 1.440000e-30 145.0
37 TraesCS7D01G275900 chr5B 88.785 107 9 2 2232 2338 571189370 571189473 1.450000e-25 128.0
38 TraesCS7D01G275900 chr5B 100.000 28 0 0 3135 3162 181159215 181159188 9.000000e-03 52.8
39 TraesCS7D01G275900 chr3B 83.125 160 25 1 3568 3727 483609181 483609338 1.440000e-30 145.0
40 TraesCS7D01G275900 chr3B 92.473 93 5 1 2231 2323 241678919 241678829 1.120000e-26 132.0
41 TraesCS7D01G275900 chr3B 88.119 101 8 3 4729 4827 829250740 829250642 3.140000e-22 117.0
42 TraesCS7D01G275900 chr6A 94.382 89 3 1 2232 2320 27782785 27782699 8.660000e-28 135.0
43 TraesCS7D01G275900 chr4B 93.407 91 4 1 2232 2322 106975942 106975854 3.110000e-27 134.0
44 TraesCS7D01G275900 chr4B 92.500 80 4 1 2125 2202 12501307 12501386 4.060000e-21 113.0
45 TraesCS7D01G275900 chr1A 93.407 91 3 2 2227 2317 590819576 590819663 1.120000e-26 132.0
46 TraesCS7D01G275900 chr1A 90.426 94 7 2 4731 4822 49890787 49890880 6.740000e-24 122.0
47 TraesCS7D01G275900 chr1A 91.358 81 5 2 2124 2202 516456697 516456777 5.250000e-20 110.0
48 TraesCS7D01G275900 chr4A 89.583 96 8 1 4729 4822 603501456 603501361 2.430000e-23 121.0
49 TraesCS7D01G275900 chr6B 88.421 95 3 4 2121 2208 233032410 233032503 1.890000e-19 108.0
50 TraesCS7D01G275900 chr6D 86.275 102 7 2 2117 2211 380137072 380136971 2.440000e-18 104.0
51 TraesCS7D01G275900 chr4D 86.869 99 5 4 2111 2202 423945411 423945314 2.440000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G275900 chr7D 264488339 264493298 4959 True 9160.00 9160 100.0000 1 4960 1 chr7D.!!$R2 4959
1 TraesCS7D01G275900 chr7B 244755355 244759642 4287 True 1537.00 3600 95.4925 930 4960 4 chr7B.!!$R4 4030
2 TraesCS7D01G275900 chr7A 288064839 288069751 4912 True 1349.56 3533 95.4364 500 4960 5 chr7A.!!$R2 4460
3 TraesCS7D01G275900 chr7A 548568942 548569506 564 False 791.00 791 91.9160 3131 3698 1 chr7A.!!$F1 567
4 TraesCS7D01G275900 chr1D 73668206 73668800 594 False 309.00 309 76.7630 150 759 1 chr1D.!!$F2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.106894 CTAGCCCGTCCCATTCCTTC 59.893 60.000 0.00 0.00 0.00 3.46 F
247 248 0.179100 ACATCGGTTGCAGATCGAGG 60.179 55.000 14.93 14.93 39.98 4.63 F
868 883 0.251033 GCTCGTTAGGGGTGGGTTTT 60.251 55.000 0.00 0.00 0.00 2.43 F
2033 2725 0.530744 GTTTCGGCCAGGAAATTCCC 59.469 55.000 8.66 0.00 37.19 3.97 F
2292 2993 2.760092 AGTGTGTGGTGTCAAAAATGCT 59.240 40.909 0.00 0.00 0.00 3.79 F
3523 4599 2.474816 ACAAAAGAGAGACGTCTGTGC 58.525 47.619 25.58 12.91 30.97 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 2406 1.076332 GACTCACACGGCACAATACC 58.924 55.000 0.00 0.00 0.00 2.73 R
1995 2687 2.945456 ACAGAAACCCAGGAAAAGGAC 58.055 47.619 0.00 0.00 0.00 3.85 R
2302 3003 0.698238 CAACAACTCCCTCCATCCCA 59.302 55.000 0.00 0.00 0.00 4.37 R
3150 4223 1.817941 GCCCCGACGTGCAATACAT 60.818 57.895 0.00 0.00 0.00 2.29 R
3608 4684 2.038952 TGGCCATTGGATATCCTCTTCG 59.961 50.000 22.35 7.53 36.82 3.79 R
4436 5675 1.134521 TCTGGGTCTGTTGTGACACAC 60.135 52.381 8.05 4.59 44.40 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.941325 CCTCCTACGGTTCTTGATGC 58.059 55.000 0.00 0.00 0.00 3.91
20 21 1.207089 CCTCCTACGGTTCTTGATGCA 59.793 52.381 0.00 0.00 0.00 3.96
21 22 2.544685 CTCCTACGGTTCTTGATGCAG 58.455 52.381 0.00 0.00 0.00 4.41
22 23 2.166459 CTCCTACGGTTCTTGATGCAGA 59.834 50.000 0.00 0.00 0.00 4.26
23 24 2.766263 TCCTACGGTTCTTGATGCAGAT 59.234 45.455 0.00 0.00 0.00 2.90
24 25 2.868583 CCTACGGTTCTTGATGCAGATG 59.131 50.000 0.00 0.00 0.00 2.90
25 26 1.089920 ACGGTTCTTGATGCAGATGC 58.910 50.000 0.00 0.00 42.50 3.91
35 36 4.628160 GCAGATGCATTCATGGCG 57.372 55.556 0.00 0.00 41.59 5.69
36 37 1.731700 GCAGATGCATTCATGGCGT 59.268 52.632 0.00 0.00 41.59 5.68
37 38 0.317603 GCAGATGCATTCATGGCGTC 60.318 55.000 0.00 6.55 45.44 5.19
38 39 4.907946 GATGCATTCATGGCGTCG 57.092 55.556 0.00 0.00 37.52 5.12
39 40 1.369689 GATGCATTCATGGCGTCGC 60.370 57.895 9.22 9.22 37.52 5.19
40 41 3.172099 ATGCATTCATGGCGTCGCG 62.172 57.895 11.75 0.00 0.00 5.87
41 42 3.864686 GCATTCATGGCGTCGCGT 61.865 61.111 11.75 0.00 0.00 6.01
42 43 2.321060 CATTCATGGCGTCGCGTC 59.679 61.111 11.75 0.00 0.00 5.19
43 44 3.254654 ATTCATGGCGTCGCGTCG 61.255 61.111 21.06 21.06 32.50 5.12
56 57 3.224806 CGTCGCATCGCTATGGTG 58.775 61.111 0.00 0.00 33.38 4.17
57 58 1.588932 CGTCGCATCGCTATGGTGT 60.589 57.895 0.00 0.00 33.38 4.16
58 59 1.811217 CGTCGCATCGCTATGGTGTG 61.811 60.000 0.00 0.00 33.38 3.82
59 60 1.882625 TCGCATCGCTATGGTGTGC 60.883 57.895 0.00 6.98 33.38 4.57
60 61 1.884464 CGCATCGCTATGGTGTGCT 60.884 57.895 12.59 0.00 33.38 4.40
61 62 1.645455 GCATCGCTATGGTGTGCTG 59.355 57.895 0.00 0.00 33.38 4.41
62 63 1.645455 CATCGCTATGGTGTGCTGC 59.355 57.895 0.00 0.00 0.00 5.25
63 64 1.524621 ATCGCTATGGTGTGCTGCC 60.525 57.895 0.00 0.00 0.00 4.85
64 65 2.947938 ATCGCTATGGTGTGCTGCCC 62.948 60.000 0.00 0.00 0.00 5.36
65 66 3.204827 GCTATGGTGTGCTGCCCG 61.205 66.667 0.00 0.00 0.00 6.13
66 67 2.584064 CTATGGTGTGCTGCCCGA 59.416 61.111 0.00 0.00 0.00 5.14
67 68 1.522355 CTATGGTGTGCTGCCCGAG 60.522 63.158 0.00 0.00 0.00 4.63
68 69 2.930385 CTATGGTGTGCTGCCCGAGG 62.930 65.000 0.00 0.00 0.00 4.63
71 72 4.767255 GTGTGCTGCCCGAGGGAG 62.767 72.222 13.28 3.53 44.25 4.30
84 85 3.231298 GGGAGCAAGCCCGTCTAT 58.769 61.111 0.00 0.00 38.58 1.98
85 86 1.527370 GGGAGCAAGCCCGTCTATT 59.473 57.895 0.00 0.00 38.58 1.73
86 87 0.107165 GGGAGCAAGCCCGTCTATTT 60.107 55.000 0.00 0.00 38.58 1.40
87 88 1.140252 GGGAGCAAGCCCGTCTATTTA 59.860 52.381 0.00 0.00 38.58 1.40
88 89 2.420967 GGGAGCAAGCCCGTCTATTTAA 60.421 50.000 0.00 0.00 38.58 1.52
89 90 2.872858 GGAGCAAGCCCGTCTATTTAAG 59.127 50.000 0.00 0.00 0.00 1.85
90 91 2.288186 GAGCAAGCCCGTCTATTTAAGC 59.712 50.000 0.00 0.00 0.00 3.09
91 92 1.333931 GCAAGCCCGTCTATTTAAGCC 59.666 52.381 0.00 0.00 0.00 4.35
92 93 2.639065 CAAGCCCGTCTATTTAAGCCA 58.361 47.619 0.00 0.00 0.00 4.75
93 94 2.614057 CAAGCCCGTCTATTTAAGCCAG 59.386 50.000 0.00 0.00 0.00 4.85
94 95 2.116238 AGCCCGTCTATTTAAGCCAGA 58.884 47.619 0.00 0.00 0.00 3.86
95 96 2.158943 AGCCCGTCTATTTAAGCCAGAC 60.159 50.000 0.00 0.00 36.23 3.51
96 97 2.419574 GCCCGTCTATTTAAGCCAGACA 60.420 50.000 11.45 0.00 38.89 3.41
97 98 3.869065 CCCGTCTATTTAAGCCAGACAA 58.131 45.455 11.45 0.00 38.89 3.18
98 99 3.621715 CCCGTCTATTTAAGCCAGACAAC 59.378 47.826 11.45 0.00 38.89 3.32
99 100 3.306166 CCGTCTATTTAAGCCAGACAACG 59.694 47.826 11.45 0.00 38.89 4.10
100 101 4.171005 CGTCTATTTAAGCCAGACAACGA 58.829 43.478 11.45 0.00 38.89 3.85
101 102 4.031426 CGTCTATTTAAGCCAGACAACGAC 59.969 45.833 11.45 0.00 38.89 4.34
102 103 4.927425 GTCTATTTAAGCCAGACAACGACA 59.073 41.667 0.00 0.00 38.82 4.35
103 104 5.407387 GTCTATTTAAGCCAGACAACGACAA 59.593 40.000 0.00 0.00 38.82 3.18
104 105 3.955771 TTTAAGCCAGACAACGACAAC 57.044 42.857 0.00 0.00 0.00 3.32
105 106 1.493772 TAAGCCAGACAACGACAACG 58.506 50.000 0.00 0.00 45.75 4.10
106 107 1.157870 AAGCCAGACAACGACAACGG 61.158 55.000 0.00 0.00 44.46 4.44
107 108 1.593209 GCCAGACAACGACAACGGA 60.593 57.895 0.00 0.00 44.46 4.69
108 109 1.155424 GCCAGACAACGACAACGGAA 61.155 55.000 0.00 0.00 44.46 4.30
109 110 0.580104 CCAGACAACGACAACGGAAC 59.420 55.000 0.00 0.00 44.46 3.62
110 111 0.580104 CAGACAACGACAACGGAACC 59.420 55.000 0.00 0.00 44.46 3.62
111 112 0.531311 AGACAACGACAACGGAACCC 60.531 55.000 0.00 0.00 44.46 4.11
112 113 0.531311 GACAACGACAACGGAACCCT 60.531 55.000 0.00 0.00 44.46 4.34
113 114 0.752054 ACAACGACAACGGAACCCTA 59.248 50.000 0.00 0.00 44.46 3.53
114 115 1.269936 ACAACGACAACGGAACCCTAG 60.270 52.381 0.00 0.00 44.46 3.02
115 116 0.320160 AACGACAACGGAACCCTAGC 60.320 55.000 0.00 0.00 44.46 3.42
116 117 1.447314 CGACAACGGAACCCTAGCC 60.447 63.158 0.00 0.00 35.72 3.93
117 118 1.078637 GACAACGGAACCCTAGCCC 60.079 63.158 0.00 0.00 0.00 5.19
121 122 3.846430 CGGAACCCTAGCCCGTCC 61.846 72.222 0.00 0.00 38.55 4.79
122 123 3.477346 GGAACCCTAGCCCGTCCC 61.477 72.222 0.00 0.00 0.00 4.46
123 124 2.686106 GAACCCTAGCCCGTCCCA 60.686 66.667 0.00 0.00 0.00 4.37
124 125 2.042261 AACCCTAGCCCGTCCCAT 59.958 61.111 0.00 0.00 0.00 4.00
125 126 1.618447 AACCCTAGCCCGTCCCATT 60.618 57.895 0.00 0.00 0.00 3.16
126 127 1.632965 AACCCTAGCCCGTCCCATTC 61.633 60.000 0.00 0.00 0.00 2.67
127 128 2.819284 CCCTAGCCCGTCCCATTCC 61.819 68.421 0.00 0.00 0.00 3.01
128 129 1.766461 CCTAGCCCGTCCCATTCCT 60.766 63.158 0.00 0.00 0.00 3.36
129 130 1.345715 CCTAGCCCGTCCCATTCCTT 61.346 60.000 0.00 0.00 0.00 3.36
130 131 0.106894 CTAGCCCGTCCCATTCCTTC 59.893 60.000 0.00 0.00 0.00 3.46
131 132 1.342672 TAGCCCGTCCCATTCCTTCC 61.343 60.000 0.00 0.00 0.00 3.46
132 133 2.595655 CCCGTCCCATTCCTTCCC 59.404 66.667 0.00 0.00 0.00 3.97
133 134 2.001269 CCCGTCCCATTCCTTCCCT 61.001 63.158 0.00 0.00 0.00 4.20
134 135 1.527370 CCGTCCCATTCCTTCCCTC 59.473 63.158 0.00 0.00 0.00 4.30
135 136 0.983378 CCGTCCCATTCCTTCCCTCT 60.983 60.000 0.00 0.00 0.00 3.69
136 137 0.912486 CGTCCCATTCCTTCCCTCTT 59.088 55.000 0.00 0.00 0.00 2.85
137 138 1.134371 CGTCCCATTCCTTCCCTCTTC 60.134 57.143 0.00 0.00 0.00 2.87
138 139 1.213182 GTCCCATTCCTTCCCTCTTCC 59.787 57.143 0.00 0.00 0.00 3.46
139 140 1.082879 TCCCATTCCTTCCCTCTTCCT 59.917 52.381 0.00 0.00 0.00 3.36
140 141 1.492599 CCCATTCCTTCCCTCTTCCTC 59.507 57.143 0.00 0.00 0.00 3.71
141 142 1.492599 CCATTCCTTCCCTCTTCCTCC 59.507 57.143 0.00 0.00 0.00 4.30
142 143 1.492599 CATTCCTTCCCTCTTCCTCCC 59.507 57.143 0.00 0.00 0.00 4.30
143 144 0.496382 TTCCTTCCCTCTTCCTCCCA 59.504 55.000 0.00 0.00 0.00 4.37
144 145 0.252742 TCCTTCCCTCTTCCTCCCAC 60.253 60.000 0.00 0.00 0.00 4.61
145 146 1.275421 CCTTCCCTCTTCCTCCCACC 61.275 65.000 0.00 0.00 0.00 4.61
146 147 0.252927 CTTCCCTCTTCCTCCCACCT 60.253 60.000 0.00 0.00 0.00 4.00
147 148 0.547712 TTCCCTCTTCCTCCCACCTG 60.548 60.000 0.00 0.00 0.00 4.00
148 149 1.229658 CCCTCTTCCTCCCACCTGT 60.230 63.158 0.00 0.00 0.00 4.00
168 169 4.845580 CGCCAGCTTCCATCCGCT 62.846 66.667 0.00 0.00 36.83 5.52
181 182 3.896133 CCGCTCCGTAGCCGCTAA 61.896 66.667 0.46 0.00 46.68 3.09
187 188 1.143183 CCGTAGCCGCTAACCATGT 59.857 57.895 0.46 0.00 0.00 3.21
192 193 2.203015 CCGCTAACCATGTCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
195 196 1.377987 GCTAACCATGTCCCGGCAA 60.378 57.895 0.00 0.00 0.00 4.52
202 203 0.394216 CATGTCCCGGCAAAGGATCA 60.394 55.000 0.00 0.00 35.38 2.92
206 207 1.304052 CCCGGCAAAGGATCACCAA 60.304 57.895 0.00 0.00 38.94 3.67
213 214 2.754552 GCAAAGGATCACCAACTATGCA 59.245 45.455 0.00 0.00 38.94 3.96
220 221 4.398988 GGATCACCAACTATGCAATGTTGA 59.601 41.667 26.42 13.27 44.29 3.18
222 223 3.188254 TCACCAACTATGCAATGTTGACG 59.812 43.478 26.42 19.16 44.29 4.35
223 224 3.058293 CACCAACTATGCAATGTTGACGT 60.058 43.478 26.42 17.74 44.29 4.34
226 227 1.999735 ACTATGCAATGTTGACGTCGG 59.000 47.619 11.62 0.00 0.00 4.79
230 231 0.584396 GCAATGTTGACGTCGGAACA 59.416 50.000 19.88 19.88 36.54 3.18
231 232 1.196808 GCAATGTTGACGTCGGAACAT 59.803 47.619 22.00 22.00 43.16 2.71
240 241 1.787847 GTCGGAACATCGGTTGCAG 59.212 57.895 0.00 0.00 44.69 4.41
241 242 0.669318 GTCGGAACATCGGTTGCAGA 60.669 55.000 0.00 0.00 44.69 4.26
247 248 0.179100 ACATCGGTTGCAGATCGAGG 60.179 55.000 14.93 14.93 39.98 4.63
291 292 4.111016 CGTGTCGCTGCCGGTCTA 62.111 66.667 1.90 0.00 34.56 2.59
297 298 3.075005 GCTGCCGGTCTACCTCCA 61.075 66.667 1.90 0.00 0.00 3.86
303 304 1.776662 CCGGTCTACCTCCAGATTCA 58.223 55.000 0.00 0.00 0.00 2.57
306 307 2.753247 GGTCTACCTCCAGATTCACCT 58.247 52.381 0.00 0.00 0.00 4.00
307 308 2.432510 GGTCTACCTCCAGATTCACCTG 59.567 54.545 0.00 0.00 0.00 4.00
316 317 3.505245 CAGATTCACCTGAGCCGGAGG 62.505 61.905 5.05 5.72 43.81 4.30
328 329 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
332 333 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
334 335 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
336 337 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
337 338 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
340 341 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
342 343 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
343 344 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
344 345 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
345 346 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
346 347 3.767044 GAGGAGGAGGAGGAGGGGC 62.767 73.684 0.00 0.00 0.00 5.80
347 348 4.095400 GGAGGAGGAGGAGGGGCA 62.095 72.222 0.00 0.00 0.00 5.36
348 349 2.041265 GAGGAGGAGGAGGGGCAA 59.959 66.667 0.00 0.00 0.00 4.52
349 350 2.285743 AGGAGGAGGAGGGGCAAC 60.286 66.667 0.00 0.00 0.00 4.17
350 351 2.610859 GGAGGAGGAGGGGCAACA 60.611 66.667 0.00 0.00 39.74 3.33
351 352 2.231380 GGAGGAGGAGGGGCAACAA 61.231 63.158 0.00 0.00 39.74 2.83
352 353 1.575447 GGAGGAGGAGGGGCAACAAT 61.575 60.000 0.00 0.00 39.74 2.71
353 354 1.213296 GAGGAGGAGGGGCAACAATA 58.787 55.000 0.00 0.00 39.74 1.90
354 355 1.141858 GAGGAGGAGGGGCAACAATAG 59.858 57.143 0.00 0.00 39.74 1.73
385 386 4.701437 AGGACCCCCAGCCCATGT 62.701 66.667 0.00 0.00 33.88 3.21
394 395 1.414061 CCAGCCCATGTAGGAGGAGG 61.414 65.000 0.00 0.00 41.22 4.30
395 396 0.399091 CAGCCCATGTAGGAGGAGGA 60.399 60.000 0.00 0.00 41.22 3.71
396 397 0.343372 AGCCCATGTAGGAGGAGGAA 59.657 55.000 0.00 0.00 41.22 3.36
397 398 0.761802 GCCCATGTAGGAGGAGGAAG 59.238 60.000 0.00 0.00 41.22 3.46
403 404 4.230455 CATGTAGGAGGAGGAAGAGGATT 58.770 47.826 0.00 0.00 0.00 3.01
412 413 0.460311 GGAAGAGGATTCGGAAGCGA 59.540 55.000 0.00 0.00 0.00 4.93
417 418 0.458025 AGGATTCGGAAGCGAACGAC 60.458 55.000 0.00 0.00 39.04 4.34
468 469 2.512896 GGCTTCGGCATGGAGGAT 59.487 61.111 0.00 0.00 43.96 3.24
494 495 2.434359 GGAGTTTGAGGTCGCCCG 60.434 66.667 0.00 0.00 35.12 6.13
495 496 2.434359 GAGTTTGAGGTCGCCCGG 60.434 66.667 0.00 0.00 35.12 5.73
496 497 3.236003 GAGTTTGAGGTCGCCCGGT 62.236 63.158 0.00 0.00 35.12 5.28
497 498 3.047877 GTTTGAGGTCGCCCGGTG 61.048 66.667 0.00 0.00 35.12 4.94
498 499 4.323477 TTTGAGGTCGCCCGGTGG 62.323 66.667 0.00 0.00 35.12 4.61
541 543 5.489249 CATTCTCGAATCCATCCAGATGAT 58.511 41.667 9.24 0.00 41.20 2.45
559 561 2.575735 TGATGCCTATGTGGAGTCCAAA 59.424 45.455 15.09 9.56 38.35 3.28
603 606 0.316607 CGGAGATCGACGAGCTCTTG 60.317 60.000 34.16 25.20 43.60 3.02
605 608 0.736053 GAGATCGACGAGCTCTTGGT 59.264 55.000 30.38 2.85 41.26 3.67
665 671 2.282040 GAGCTGCCACAGTTGCCT 60.282 61.111 0.00 0.00 33.43 4.75
693 708 0.809385 GGAGACGGACACGAAGATCA 59.191 55.000 0.00 0.00 44.60 2.92
694 709 1.405821 GGAGACGGACACGAAGATCAT 59.594 52.381 0.00 0.00 44.60 2.45
702 717 3.364062 GACACGAAGATCATCGACGATT 58.636 45.455 25.55 0.94 45.48 3.34
712 727 9.661187 GAAGATCATCGACGATTAGTAGTTTAA 57.339 33.333 7.83 0.00 0.00 1.52
750 765 8.281212 AGTAGTTAGGTTTTTAATCTGCATGG 57.719 34.615 0.00 0.00 0.00 3.66
759 774 7.201821 GGTTTTTAATCTGCATGGCTAGTATGT 60.202 37.037 0.00 0.00 0.00 2.29
760 775 8.836413 GTTTTTAATCTGCATGGCTAGTATGTA 58.164 33.333 0.00 5.69 0.00 2.29
761 776 8.607441 TTTTAATCTGCATGGCTAGTATGTAG 57.393 34.615 15.77 15.77 38.92 2.74
762 777 7.539034 TTAATCTGCATGGCTAGTATGTAGA 57.461 36.000 22.09 22.09 46.34 2.59
765 780 6.425210 TCTGCATGGCTAGTATGTAGATTT 57.575 37.500 18.61 0.00 40.67 2.17
766 781 6.459066 TCTGCATGGCTAGTATGTAGATTTC 58.541 40.000 18.61 2.01 40.67 2.17
767 782 6.041979 TCTGCATGGCTAGTATGTAGATTTCA 59.958 38.462 18.61 4.66 40.67 2.69
768 783 6.772605 TGCATGGCTAGTATGTAGATTTCAT 58.227 36.000 0.00 0.00 0.00 2.57
769 784 7.906327 TGCATGGCTAGTATGTAGATTTCATA 58.094 34.615 0.00 0.00 0.00 2.15
770 785 8.542926 TGCATGGCTAGTATGTAGATTTCATAT 58.457 33.333 0.00 0.00 31.76 1.78
771 786 9.388506 GCATGGCTAGTATGTAGATTTCATATT 57.611 33.333 0.00 0.00 31.76 1.28
780 795 9.884465 GTATGTAGATTTCATATTTGAGGTTGC 57.116 33.333 0.00 0.00 32.27 4.17
781 796 7.936496 TGTAGATTTCATATTTGAGGTTGCA 57.064 32.000 0.00 0.00 32.27 4.08
782 797 8.347004 TGTAGATTTCATATTTGAGGTTGCAA 57.653 30.769 0.00 0.00 32.27 4.08
783 798 8.243426 TGTAGATTTCATATTTGAGGTTGCAAC 58.757 33.333 21.59 21.59 32.27 4.17
784 799 7.472334 AGATTTCATATTTGAGGTTGCAACT 57.528 32.000 27.64 14.56 32.27 3.16
785 800 7.899973 AGATTTCATATTTGAGGTTGCAACTT 58.100 30.769 27.64 21.86 32.27 2.66
786 801 7.816031 AGATTTCATATTTGAGGTTGCAACTTG 59.184 33.333 27.64 7.96 32.27 3.16
787 802 4.808558 TCATATTTGAGGTTGCAACTTGC 58.191 39.130 27.64 17.31 45.29 4.01
788 803 5.221402 TTCATATTTGAGGTTGCAACTTGCA 60.221 36.000 27.64 19.45 41.77 4.08
789 804 6.684865 TTCATATTTGAGGTTGCAACTTGCAA 60.685 34.615 27.64 22.61 45.93 4.08
798 813 2.460757 GCAACTTGCAATGGGTGATT 57.539 45.000 8.97 0.00 44.26 2.57
799 814 2.769893 GCAACTTGCAATGGGTGATTT 58.230 42.857 8.97 0.00 44.26 2.17
800 815 3.140623 GCAACTTGCAATGGGTGATTTT 58.859 40.909 8.97 0.00 44.26 1.82
801 816 3.565063 GCAACTTGCAATGGGTGATTTTT 59.435 39.130 8.97 0.00 44.26 1.94
802 817 4.555116 GCAACTTGCAATGGGTGATTTTTG 60.555 41.667 8.97 0.00 44.26 2.44
803 818 4.420522 ACTTGCAATGGGTGATTTTTGT 57.579 36.364 0.00 0.00 0.00 2.83
804 819 5.543507 ACTTGCAATGGGTGATTTTTGTA 57.456 34.783 0.00 0.00 0.00 2.41
805 820 6.112927 ACTTGCAATGGGTGATTTTTGTAT 57.887 33.333 0.00 0.00 0.00 2.29
806 821 5.933463 ACTTGCAATGGGTGATTTTTGTATG 59.067 36.000 0.00 0.00 0.00 2.39
807 822 5.735285 TGCAATGGGTGATTTTTGTATGA 57.265 34.783 0.00 0.00 0.00 2.15
808 823 6.297080 TGCAATGGGTGATTTTTGTATGAT 57.703 33.333 0.00 0.00 0.00 2.45
809 824 7.415592 TGCAATGGGTGATTTTTGTATGATA 57.584 32.000 0.00 0.00 0.00 2.15
810 825 8.020777 TGCAATGGGTGATTTTTGTATGATAT 57.979 30.769 0.00 0.00 0.00 1.63
811 826 8.143193 TGCAATGGGTGATTTTTGTATGATATC 58.857 33.333 0.00 0.00 0.00 1.63
812 827 7.599998 GCAATGGGTGATTTTTGTATGATATCC 59.400 37.037 0.00 0.00 0.00 2.59
813 828 6.875948 TGGGTGATTTTTGTATGATATCCG 57.124 37.500 0.00 0.00 0.00 4.18
814 829 5.767665 TGGGTGATTTTTGTATGATATCCGG 59.232 40.000 0.00 0.00 0.00 5.14
815 830 5.768164 GGGTGATTTTTGTATGATATCCGGT 59.232 40.000 0.00 0.00 0.00 5.28
816 831 6.072673 GGGTGATTTTTGTATGATATCCGGTC 60.073 42.308 0.00 0.00 0.00 4.79
817 832 6.485313 GGTGATTTTTGTATGATATCCGGTCA 59.515 38.462 0.00 0.00 0.00 4.02
818 833 7.352739 GTGATTTTTGTATGATATCCGGTCAC 58.647 38.462 0.00 0.00 0.00 3.67
819 834 7.226720 GTGATTTTTGTATGATATCCGGTCACT 59.773 37.037 0.00 0.00 0.00 3.41
820 835 8.425703 TGATTTTTGTATGATATCCGGTCACTA 58.574 33.333 0.00 0.00 0.00 2.74
821 836 9.436957 GATTTTTGTATGATATCCGGTCACTAT 57.563 33.333 0.00 0.00 0.00 2.12
822 837 8.827177 TTTTTGTATGATATCCGGTCACTATC 57.173 34.615 0.00 5.37 0.00 2.08
823 838 7.776618 TTTGTATGATATCCGGTCACTATCT 57.223 36.000 0.00 0.00 0.00 1.98
824 839 6.759497 TGTATGATATCCGGTCACTATCTG 57.241 41.667 0.00 0.00 0.00 2.90
825 840 4.727507 ATGATATCCGGTCACTATCTGC 57.272 45.455 0.00 0.00 0.00 4.26
826 841 2.488153 TGATATCCGGTCACTATCTGCG 59.512 50.000 0.00 0.00 0.00 5.18
827 842 1.244816 TATCCGGTCACTATCTGCGG 58.755 55.000 0.00 0.00 0.00 5.69
828 843 0.467474 ATCCGGTCACTATCTGCGGA 60.467 55.000 0.00 0.00 38.45 5.54
829 844 1.065928 CCGGTCACTATCTGCGGAC 59.934 63.158 0.00 0.00 29.37 4.79
830 845 1.663379 CCGGTCACTATCTGCGGACA 61.663 60.000 0.00 0.00 29.37 4.02
831 846 0.385751 CGGTCACTATCTGCGGACAT 59.614 55.000 0.00 0.00 32.00 3.06
832 847 1.607148 CGGTCACTATCTGCGGACATA 59.393 52.381 0.00 0.00 32.00 2.29
833 848 2.229062 CGGTCACTATCTGCGGACATAT 59.771 50.000 0.00 0.00 32.00 1.78
834 849 3.670895 CGGTCACTATCTGCGGACATATC 60.671 52.174 0.00 0.00 32.00 1.63
835 850 3.367498 GGTCACTATCTGCGGACATATCC 60.367 52.174 0.00 0.00 42.28 2.59
843 858 4.848685 GGACATATCCGGCGTGTT 57.151 55.556 6.01 0.00 34.48 3.32
844 859 2.601562 GGACATATCCGGCGTGTTC 58.398 57.895 6.01 0.00 34.48 3.18
845 860 1.213094 GGACATATCCGGCGTGTTCG 61.213 60.000 6.01 0.00 34.48 3.95
856 871 2.431260 GTGTTCGCGGGCTCGTTA 60.431 61.111 8.30 0.00 38.89 3.18
857 872 2.126228 TGTTCGCGGGCTCGTTAG 60.126 61.111 8.30 0.00 38.89 2.34
858 873 2.884207 GTTCGCGGGCTCGTTAGG 60.884 66.667 8.30 0.00 38.89 2.69
859 874 4.137872 TTCGCGGGCTCGTTAGGG 62.138 66.667 8.30 0.00 38.89 3.53
862 877 4.832608 GCGGGCTCGTTAGGGGTG 62.833 72.222 8.30 0.00 38.89 4.61
863 878 4.157120 CGGGCTCGTTAGGGGTGG 62.157 72.222 0.00 0.00 0.00 4.61
864 879 3.793888 GGGCTCGTTAGGGGTGGG 61.794 72.222 0.00 0.00 0.00 4.61
865 880 3.007323 GGCTCGTTAGGGGTGGGT 61.007 66.667 0.00 0.00 0.00 4.51
866 881 2.599757 GGCTCGTTAGGGGTGGGTT 61.600 63.158 0.00 0.00 0.00 4.11
867 882 1.377612 GCTCGTTAGGGGTGGGTTT 59.622 57.895 0.00 0.00 0.00 3.27
868 883 0.251033 GCTCGTTAGGGGTGGGTTTT 60.251 55.000 0.00 0.00 0.00 2.43
869 884 1.530323 CTCGTTAGGGGTGGGTTTTG 58.470 55.000 0.00 0.00 0.00 2.44
870 885 0.537828 TCGTTAGGGGTGGGTTTTGC 60.538 55.000 0.00 0.00 0.00 3.68
871 886 0.824182 CGTTAGGGGTGGGTTTTGCA 60.824 55.000 0.00 0.00 0.00 4.08
872 887 1.639722 GTTAGGGGTGGGTTTTGCAT 58.360 50.000 0.00 0.00 0.00 3.96
873 888 2.810164 GTTAGGGGTGGGTTTTGCATA 58.190 47.619 0.00 0.00 0.00 3.14
874 889 3.371034 GTTAGGGGTGGGTTTTGCATAT 58.629 45.455 0.00 0.00 0.00 1.78
875 890 2.640284 AGGGGTGGGTTTTGCATATT 57.360 45.000 0.00 0.00 0.00 1.28
876 891 2.187100 AGGGGTGGGTTTTGCATATTG 58.813 47.619 0.00 0.00 0.00 1.90
877 892 1.406751 GGGGTGGGTTTTGCATATTGC 60.407 52.381 0.00 0.00 45.29 3.56
894 909 8.689251 GCATATTGCGATTGTAGATACTCTAA 57.311 34.615 0.00 0.00 31.71 2.10
895 910 8.587950 GCATATTGCGATTGTAGATACTCTAAC 58.412 37.037 0.00 0.00 31.71 2.34
896 911 9.626045 CATATTGCGATTGTAGATACTCTAACA 57.374 33.333 0.00 0.00 29.58 2.41
920 935 9.396022 ACATATAAATTTCCTTTCGTCACTCAT 57.604 29.630 0.00 0.00 0.00 2.90
1222 1864 3.615811 TCTCCTGGGCCACCTCCT 61.616 66.667 0.00 0.00 37.76 3.69
1520 2177 1.347320 GCAACCGACCTTACTCTTCG 58.653 55.000 0.00 0.00 0.00 3.79
1570 2242 2.159324 TCTGTCTCATGATCGTCTGTGC 60.159 50.000 0.00 0.00 0.00 4.57
1616 2297 0.592148 CAGAGACGATACCCGCTACC 59.408 60.000 0.00 0.00 43.32 3.18
1684 2365 1.134788 AGAGCCCATTCGAACGGTAAG 60.135 52.381 9.75 0.00 0.00 2.34
1734 2415 3.878778 ACAGAGGAGAATGGTATTGTGC 58.121 45.455 0.00 0.00 0.00 4.57
1736 2417 2.158900 AGAGGAGAATGGTATTGTGCCG 60.159 50.000 0.00 0.00 0.00 5.69
2033 2725 0.530744 GTTTCGGCCAGGAAATTCCC 59.469 55.000 8.66 0.00 37.19 3.97
2129 2830 9.817809 TTCATGATAGACATAAACAAGTACTCC 57.182 33.333 0.00 0.00 37.46 3.85
2130 2831 8.421784 TCATGATAGACATAAACAAGTACTCCC 58.578 37.037 0.00 0.00 37.46 4.30
2131 2832 7.973048 TGATAGACATAAACAAGTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
2132 2833 8.008513 TGATAGACATAAACAAGTACTCCCTC 57.991 38.462 0.00 0.00 0.00 4.30
2133 2834 7.839705 TGATAGACATAAACAAGTACTCCCTCT 59.160 37.037 0.00 0.00 0.00 3.69
2134 2835 6.287589 AGACATAAACAAGTACTCCCTCTG 57.712 41.667 0.00 0.00 0.00 3.35
2135 2836 5.780793 AGACATAAACAAGTACTCCCTCTGT 59.219 40.000 0.00 0.00 0.00 3.41
2136 2837 6.952358 AGACATAAACAAGTACTCCCTCTGTA 59.048 38.462 0.00 0.00 0.00 2.74
2137 2838 7.453752 AGACATAAACAAGTACTCCCTCTGTAA 59.546 37.037 0.00 0.00 0.00 2.41
2138 2839 7.970102 ACATAAACAAGTACTCCCTCTGTAAA 58.030 34.615 0.00 0.00 0.00 2.01
2139 2840 8.095169 ACATAAACAAGTACTCCCTCTGTAAAG 58.905 37.037 0.00 0.00 0.00 1.85
2140 2841 6.742559 AAACAAGTACTCCCTCTGTAAAGA 57.257 37.500 0.00 0.00 0.00 2.52
2141 2842 6.742559 AACAAGTACTCCCTCTGTAAAGAA 57.257 37.500 0.00 0.00 0.00 2.52
2142 2843 6.742559 ACAAGTACTCCCTCTGTAAAGAAA 57.257 37.500 0.00 0.00 0.00 2.52
2143 2844 7.317722 ACAAGTACTCCCTCTGTAAAGAAAT 57.682 36.000 0.00 0.00 0.00 2.17
2144 2845 8.431910 ACAAGTACTCCCTCTGTAAAGAAATA 57.568 34.615 0.00 0.00 0.00 1.40
2145 2846 9.047947 ACAAGTACTCCCTCTGTAAAGAAATAT 57.952 33.333 0.00 0.00 0.00 1.28
2149 2850 9.984190 GTACTCCCTCTGTAAAGAAATATAAGG 57.016 37.037 0.00 0.00 0.00 2.69
2150 2851 8.035448 ACTCCCTCTGTAAAGAAATATAAGGG 57.965 38.462 0.00 0.00 41.93 3.95
2151 2852 6.838382 TCCCTCTGTAAAGAAATATAAGGGC 58.162 40.000 0.00 0.00 40.64 5.19
2152 2853 5.701290 CCCTCTGTAAAGAAATATAAGGGCG 59.299 44.000 0.00 0.00 34.93 6.13
2153 2854 6.289064 CCTCTGTAAAGAAATATAAGGGCGT 58.711 40.000 0.00 0.00 0.00 5.68
2154 2855 6.766467 CCTCTGTAAAGAAATATAAGGGCGTT 59.234 38.462 0.00 0.00 0.00 4.84
2155 2856 7.282450 CCTCTGTAAAGAAATATAAGGGCGTTT 59.718 37.037 0.00 0.00 0.00 3.60
2156 2857 9.321562 CTCTGTAAAGAAATATAAGGGCGTTTA 57.678 33.333 0.00 0.00 0.00 2.01
2157 2858 9.321562 TCTGTAAAGAAATATAAGGGCGTTTAG 57.678 33.333 0.00 0.00 0.00 1.85
2158 2859 9.321562 CTGTAAAGAAATATAAGGGCGTTTAGA 57.678 33.333 0.00 0.00 0.00 2.10
2159 2860 9.841295 TGTAAAGAAATATAAGGGCGTTTAGAT 57.159 29.630 0.00 0.00 0.00 1.98
2161 2862 8.974060 AAAGAAATATAAGGGCGTTTAGATCA 57.026 30.769 0.00 0.00 0.00 2.92
2162 2863 8.608844 AAGAAATATAAGGGCGTTTAGATCAG 57.391 34.615 0.00 0.00 0.00 2.90
2163 2864 7.736893 AGAAATATAAGGGCGTTTAGATCAGT 58.263 34.615 0.00 0.00 0.00 3.41
2164 2865 8.867097 AGAAATATAAGGGCGTTTAGATCAGTA 58.133 33.333 0.00 0.00 0.00 2.74
2165 2866 9.141400 GAAATATAAGGGCGTTTAGATCAGTAG 57.859 37.037 0.00 0.00 0.00 2.57
2166 2867 7.778185 ATATAAGGGCGTTTAGATCAGTAGT 57.222 36.000 0.00 0.00 0.00 2.73
2167 2868 3.802948 AGGGCGTTTAGATCAGTAGTG 57.197 47.619 0.00 0.00 0.00 2.74
2168 2869 3.362706 AGGGCGTTTAGATCAGTAGTGA 58.637 45.455 1.95 1.95 37.02 3.41
2169 2870 3.961408 AGGGCGTTTAGATCAGTAGTGAT 59.039 43.478 13.00 13.00 46.75 3.06
2179 2880 3.795623 TCAGTAGTGATCTAAACGCCC 57.204 47.619 0.00 0.00 0.00 6.13
2180 2881 3.362706 TCAGTAGTGATCTAAACGCCCT 58.637 45.455 0.00 0.00 0.00 5.19
2181 2882 3.767673 TCAGTAGTGATCTAAACGCCCTT 59.232 43.478 0.00 0.00 0.00 3.95
2182 2883 4.951715 TCAGTAGTGATCTAAACGCCCTTA 59.048 41.667 0.00 0.00 0.00 2.69
2183 2884 5.597182 TCAGTAGTGATCTAAACGCCCTTAT 59.403 40.000 0.00 0.00 0.00 1.73
2184 2885 6.774170 TCAGTAGTGATCTAAACGCCCTTATA 59.226 38.462 0.00 0.00 0.00 0.98
2185 2886 7.450634 TCAGTAGTGATCTAAACGCCCTTATAT 59.549 37.037 0.00 0.00 0.00 0.86
2186 2887 8.088981 CAGTAGTGATCTAAACGCCCTTATATT 58.911 37.037 0.00 0.00 0.00 1.28
2187 2888 8.648693 AGTAGTGATCTAAACGCCCTTATATTT 58.351 33.333 0.00 0.00 0.00 1.40
2188 2889 7.964604 AGTGATCTAAACGCCCTTATATTTC 57.035 36.000 0.00 0.00 0.00 2.17
2189 2890 7.736893 AGTGATCTAAACGCCCTTATATTTCT 58.263 34.615 0.00 0.00 0.00 2.52
2190 2891 8.211629 AGTGATCTAAACGCCCTTATATTTCTT 58.788 33.333 0.00 0.00 0.00 2.52
2191 2892 8.837389 GTGATCTAAACGCCCTTATATTTCTTT 58.163 33.333 0.00 0.00 0.00 2.52
2195 2896 9.760077 TCTAAACGCCCTTATATTTCTTTAGAG 57.240 33.333 0.00 0.00 29.73 2.43
2196 2897 7.803279 AAACGCCCTTATATTTCTTTAGAGG 57.197 36.000 0.00 0.00 0.00 3.69
2197 2898 5.866207 ACGCCCTTATATTTCTTTAGAGGG 58.134 41.667 0.00 0.00 44.14 4.30
2233 2934 7.843490 TTAAAAGCACTGAGGTGACATATAC 57.157 36.000 0.00 0.00 45.61 1.47
2234 2935 5.683876 AAAGCACTGAGGTGACATATACT 57.316 39.130 0.00 0.00 45.61 2.12
2235 2936 4.927978 AGCACTGAGGTGACATATACTC 57.072 45.455 0.00 0.00 45.61 2.59
2236 2937 3.639094 AGCACTGAGGTGACATATACTCC 59.361 47.826 0.00 0.00 45.61 3.85
2237 2938 3.243907 GCACTGAGGTGACATATACTCCC 60.244 52.174 0.00 0.00 45.61 4.30
2238 2939 4.219115 CACTGAGGTGACATATACTCCCT 58.781 47.826 0.00 0.00 45.61 4.20
2239 2940 4.279671 CACTGAGGTGACATATACTCCCTC 59.720 50.000 0.00 0.00 45.61 4.30
2240 2941 4.169068 ACTGAGGTGACATATACTCCCTCT 59.831 45.833 0.00 0.00 39.36 3.69
2241 2942 4.474394 TGAGGTGACATATACTCCCTCTG 58.526 47.826 0.00 0.00 39.36 3.35
2242 2943 4.079154 TGAGGTGACATATACTCCCTCTGT 60.079 45.833 0.00 0.00 39.36 3.41
2243 2944 4.475345 AGGTGACATATACTCCCTCTGTC 58.525 47.826 0.00 0.00 37.36 3.51
2244 2945 3.574826 GGTGACATATACTCCCTCTGTCC 59.425 52.174 0.00 0.00 36.29 4.02
2245 2946 3.574826 GTGACATATACTCCCTCTGTCCC 59.425 52.174 0.00 0.00 36.29 4.46
2246 2947 3.206639 TGACATATACTCCCTCTGTCCCA 59.793 47.826 0.00 0.00 36.29 4.37
2247 2948 4.140686 TGACATATACTCCCTCTGTCCCAT 60.141 45.833 0.00 0.00 36.29 4.00
2248 2949 5.075900 TGACATATACTCCCTCTGTCCCATA 59.924 44.000 0.00 0.00 36.29 2.74
2249 2950 5.977533 ACATATACTCCCTCTGTCCCATAA 58.022 41.667 0.00 0.00 0.00 1.90
2250 2951 6.575411 ACATATACTCCCTCTGTCCCATAAT 58.425 40.000 0.00 0.00 0.00 1.28
2251 2952 7.719424 ACATATACTCCCTCTGTCCCATAATA 58.281 38.462 0.00 0.00 0.00 0.98
2252 2953 8.355256 ACATATACTCCCTCTGTCCCATAATAT 58.645 37.037 0.00 0.00 0.00 1.28
2253 2954 9.883293 CATATACTCCCTCTGTCCCATAATATA 57.117 37.037 0.00 0.00 0.00 0.86
2255 2956 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
2256 2957 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2257 2958 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
2258 2959 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
2259 2960 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
2260 2961 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2261 2962 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2262 2963 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2263 2964 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2264 2965 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2288 2989 4.955925 CACTAGTGTGTGGTGTCAAAAA 57.044 40.909 15.06 0.00 39.24 1.94
2289 2990 5.499139 CACTAGTGTGTGGTGTCAAAAAT 57.501 39.130 15.06 0.00 39.24 1.82
2290 2991 5.273170 CACTAGTGTGTGGTGTCAAAAATG 58.727 41.667 15.06 0.00 39.24 2.32
2291 2992 3.163630 AGTGTGTGGTGTCAAAAATGC 57.836 42.857 0.00 0.00 0.00 3.56
2292 2993 2.760092 AGTGTGTGGTGTCAAAAATGCT 59.240 40.909 0.00 0.00 0.00 3.79
2293 2994 3.115554 GTGTGTGGTGTCAAAAATGCTC 58.884 45.455 0.00 0.00 0.00 4.26
2294 2995 3.023119 TGTGTGGTGTCAAAAATGCTCT 58.977 40.909 0.00 0.00 0.00 4.09
2295 2996 3.446873 TGTGTGGTGTCAAAAATGCTCTT 59.553 39.130 0.00 0.00 0.00 2.85
2296 2997 4.642437 TGTGTGGTGTCAAAAATGCTCTTA 59.358 37.500 0.00 0.00 0.00 2.10
2297 2998 5.301551 TGTGTGGTGTCAAAAATGCTCTTAT 59.698 36.000 0.00 0.00 0.00 1.73
2298 2999 6.488344 TGTGTGGTGTCAAAAATGCTCTTATA 59.512 34.615 0.00 0.00 0.00 0.98
2299 3000 7.176515 TGTGTGGTGTCAAAAATGCTCTTATAT 59.823 33.333 0.00 0.00 0.00 0.86
2300 3001 8.028938 GTGTGGTGTCAAAAATGCTCTTATATT 58.971 33.333 0.00 0.00 0.00 1.28
2301 3002 9.237187 TGTGGTGTCAAAAATGCTCTTATATTA 57.763 29.630 0.00 0.00 0.00 0.98
2304 3005 9.683069 GGTGTCAAAAATGCTCTTATATTATGG 57.317 33.333 0.00 0.00 0.00 2.74
2305 3006 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
2306 3007 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
2309 3010 9.865321 CAAAAATGCTCTTATATTATGGGATGG 57.135 33.333 0.00 0.00 0.00 3.51
2310 3011 9.827198 AAAAATGCTCTTATATTATGGGATGGA 57.173 29.630 0.00 0.00 0.00 3.41
2311 3012 9.471702 AAAATGCTCTTATATTATGGGATGGAG 57.528 33.333 0.00 0.00 0.00 3.86
2312 3013 6.566079 TGCTCTTATATTATGGGATGGAGG 57.434 41.667 0.00 0.00 0.00 4.30
2313 3014 5.429762 TGCTCTTATATTATGGGATGGAGGG 59.570 44.000 0.00 0.00 0.00 4.30
2314 3015 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
2315 3016 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
2316 3017 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
2317 3018 7.263901 TCTTATATTATGGGATGGAGGGAGTT 58.736 38.462 0.00 0.00 0.00 3.01
2349 3050 9.570468 AAGCTCATGTCATACATCTTTTCATAT 57.430 29.630 0.00 0.00 36.53 1.78
2361 3062 7.613585 ACATCTTTTCATATTCATGTTTGCCA 58.386 30.769 0.00 0.00 33.57 4.92
2490 3191 2.802816 GACTCGGATTGCATACATGGAC 59.197 50.000 0.00 0.00 0.00 4.02
2781 3753 9.294030 GTCTGCTGAACCAAATTTATTAATGAG 57.706 33.333 0.00 0.00 0.00 2.90
2908 3981 7.122715 TGGCTTATGGAAGTTGGTACATTATT 58.877 34.615 0.00 0.00 33.00 1.40
2909 3982 8.275758 TGGCTTATGGAAGTTGGTACATTATTA 58.724 33.333 0.00 0.00 33.00 0.98
3126 4199 5.415389 TGCACTGCACATGTAATTCAGTAAT 59.585 36.000 16.59 0.00 36.37 1.89
3523 4599 2.474816 ACAAAAGAGAGACGTCTGTGC 58.525 47.619 25.58 12.91 30.97 4.57
3608 4684 4.037684 ACCCGTGTCAGAATATAGTGTAGC 59.962 45.833 0.00 0.00 0.00 3.58
4033 5120 4.561530 GCCAAGACACAGATGAGTGACTAA 60.562 45.833 0.57 0.00 42.17 2.24
4115 5202 4.023107 CGATGTGTATAGAATCCCGACACT 60.023 45.833 9.52 0.00 40.80 3.55
4349 5588 1.953231 GCCCTTTGGAGAAGGCATGC 61.953 60.000 9.90 9.90 45.07 4.06
4436 5675 2.564504 TGTCAAGTCTCTGTCCCAGATG 59.435 50.000 0.00 0.00 39.92 2.90
4529 5768 3.307762 GGAGCCTAAAGTGTGTTCCTCAT 60.308 47.826 0.00 0.00 0.00 2.90
4634 5873 3.951663 GTGTAACTTATTGGCTCTGGGT 58.048 45.455 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.286294 GCATCTGCATCAAGAACCGTAG 59.714 50.000 0.00 0.00 41.59 3.51
5 6 2.279741 GCATCTGCATCAAGAACCGTA 58.720 47.619 0.00 0.00 41.59 4.02
6 7 1.089920 GCATCTGCATCAAGAACCGT 58.910 50.000 0.00 0.00 41.59 4.83
7 8 3.911989 GCATCTGCATCAAGAACCG 57.088 52.632 0.00 0.00 41.59 4.44
18 19 0.317603 GACGCCATGAATGCATCTGC 60.318 55.000 0.00 0.00 42.50 4.26
19 20 0.041576 CGACGCCATGAATGCATCTG 60.042 55.000 0.00 0.00 30.68 2.90
20 21 1.779025 GCGACGCCATGAATGCATCT 61.779 55.000 9.14 0.00 30.68 2.90
21 22 1.369689 GCGACGCCATGAATGCATC 60.370 57.895 9.14 0.00 30.68 3.91
22 23 2.717485 GCGACGCCATGAATGCAT 59.283 55.556 9.14 0.00 34.29 3.96
23 24 3.863543 CGCGACGCCATGAATGCA 61.864 61.111 15.34 0.00 0.00 3.96
24 25 3.773649 GACGCGACGCCATGAATGC 62.774 63.158 15.93 0.00 0.00 3.56
25 26 2.321060 GACGCGACGCCATGAATG 59.679 61.111 15.93 0.15 0.00 2.67
26 27 3.254654 CGACGCGACGCCATGAAT 61.255 61.111 18.93 0.00 0.00 2.57
39 40 1.588932 ACACCATAGCGATGCGACG 60.589 57.895 0.56 0.00 0.00 5.12
40 41 1.927210 CACACCATAGCGATGCGAC 59.073 57.895 0.56 0.00 0.00 5.19
41 42 1.882625 GCACACCATAGCGATGCGA 60.883 57.895 0.56 0.00 0.00 5.10
42 43 1.884464 AGCACACCATAGCGATGCG 60.884 57.895 0.56 0.00 41.23 4.73
43 44 1.645455 CAGCACACCATAGCGATGC 59.355 57.895 0.56 0.00 36.52 3.91
44 45 1.645455 GCAGCACACCATAGCGATG 59.355 57.895 0.00 0.00 35.48 3.84
45 46 1.524621 GGCAGCACACCATAGCGAT 60.525 57.895 0.00 0.00 35.48 4.58
46 47 2.125147 GGCAGCACACCATAGCGA 60.125 61.111 0.00 0.00 35.48 4.93
47 48 3.204827 GGGCAGCACACCATAGCG 61.205 66.667 0.00 0.00 35.48 4.26
48 49 3.204827 CGGGCAGCACACCATAGC 61.205 66.667 0.00 0.00 0.00 2.97
49 50 1.522355 CTCGGGCAGCACACCATAG 60.522 63.158 0.00 0.00 0.00 2.23
50 51 2.584064 CTCGGGCAGCACACCATA 59.416 61.111 0.00 0.00 0.00 2.74
51 52 4.415150 CCTCGGGCAGCACACCAT 62.415 66.667 0.00 0.00 0.00 3.55
54 55 4.767255 CTCCCTCGGGCAGCACAC 62.767 72.222 0.00 0.00 34.68 3.82
64 65 4.821589 GACGGGCTTGCTCCCTCG 62.822 72.222 7.49 0.00 44.30 4.63
65 66 1.403687 ATAGACGGGCTTGCTCCCTC 61.404 60.000 0.00 4.87 44.30 4.30
66 67 0.983378 AATAGACGGGCTTGCTCCCT 60.983 55.000 0.00 0.00 44.30 4.20
67 68 0.107165 AAATAGACGGGCTTGCTCCC 60.107 55.000 0.00 0.00 43.02 4.30
68 69 2.614829 TAAATAGACGGGCTTGCTCC 57.385 50.000 0.00 0.00 0.00 4.70
69 70 2.288186 GCTTAAATAGACGGGCTTGCTC 59.712 50.000 0.00 0.00 0.00 4.26
70 71 2.289565 GCTTAAATAGACGGGCTTGCT 58.710 47.619 0.00 0.00 0.00 3.91
71 72 1.333931 GGCTTAAATAGACGGGCTTGC 59.666 52.381 0.00 0.00 0.00 4.01
72 73 2.614057 CTGGCTTAAATAGACGGGCTTG 59.386 50.000 0.00 0.00 34.27 4.01
73 74 2.504175 TCTGGCTTAAATAGACGGGCTT 59.496 45.455 0.00 0.00 38.95 4.35
74 75 2.116238 TCTGGCTTAAATAGACGGGCT 58.884 47.619 0.00 0.00 38.95 5.19
75 76 2.210961 GTCTGGCTTAAATAGACGGGC 58.789 52.381 0.00 0.00 38.95 6.13
76 77 3.536956 TGTCTGGCTTAAATAGACGGG 57.463 47.619 0.00 0.00 42.80 5.28
77 78 3.306166 CGTTGTCTGGCTTAAATAGACGG 59.694 47.826 0.00 0.00 42.80 4.79
78 79 4.031426 GTCGTTGTCTGGCTTAAATAGACG 59.969 45.833 0.00 0.00 42.80 4.18
79 80 4.927425 TGTCGTTGTCTGGCTTAAATAGAC 59.073 41.667 0.00 0.00 40.85 2.59
80 81 5.142061 TGTCGTTGTCTGGCTTAAATAGA 57.858 39.130 0.00 0.00 0.00 1.98
81 82 5.618561 GTTGTCGTTGTCTGGCTTAAATAG 58.381 41.667 0.00 0.00 0.00 1.73
82 83 4.150980 CGTTGTCGTTGTCTGGCTTAAATA 59.849 41.667 0.00 0.00 0.00 1.40
83 84 3.059188 CGTTGTCGTTGTCTGGCTTAAAT 60.059 43.478 0.00 0.00 0.00 1.40
84 85 2.285756 CGTTGTCGTTGTCTGGCTTAAA 59.714 45.455 0.00 0.00 0.00 1.52
85 86 1.862201 CGTTGTCGTTGTCTGGCTTAA 59.138 47.619 0.00 0.00 0.00 1.85
86 87 1.493772 CGTTGTCGTTGTCTGGCTTA 58.506 50.000 0.00 0.00 0.00 3.09
87 88 1.157870 CCGTTGTCGTTGTCTGGCTT 61.158 55.000 0.00 0.00 35.01 4.35
88 89 1.594293 CCGTTGTCGTTGTCTGGCT 60.594 57.895 0.00 0.00 35.01 4.75
89 90 1.155424 TTCCGTTGTCGTTGTCTGGC 61.155 55.000 0.00 0.00 35.01 4.85
90 91 0.580104 GTTCCGTTGTCGTTGTCTGG 59.420 55.000 0.00 0.00 35.01 3.86
91 92 0.580104 GGTTCCGTTGTCGTTGTCTG 59.420 55.000 0.00 0.00 35.01 3.51
92 93 0.531311 GGGTTCCGTTGTCGTTGTCT 60.531 55.000 0.00 0.00 35.01 3.41
93 94 0.531311 AGGGTTCCGTTGTCGTTGTC 60.531 55.000 0.00 0.00 35.01 3.18
94 95 0.752054 TAGGGTTCCGTTGTCGTTGT 59.248 50.000 0.00 0.00 35.01 3.32
95 96 1.425412 CTAGGGTTCCGTTGTCGTTG 58.575 55.000 0.00 0.00 35.01 4.10
96 97 0.320160 GCTAGGGTTCCGTTGTCGTT 60.320 55.000 0.00 0.00 35.01 3.85
97 98 1.291272 GCTAGGGTTCCGTTGTCGT 59.709 57.895 0.00 0.00 35.01 4.34
98 99 1.447314 GGCTAGGGTTCCGTTGTCG 60.447 63.158 0.00 0.00 0.00 4.35
99 100 1.078637 GGGCTAGGGTTCCGTTGTC 60.079 63.158 0.00 0.00 0.00 3.18
100 101 2.951101 CGGGCTAGGGTTCCGTTGT 61.951 63.158 0.00 0.00 39.04 3.32
101 102 2.125269 CGGGCTAGGGTTCCGTTG 60.125 66.667 0.00 0.00 39.04 4.10
105 106 3.477346 GGGACGGGCTAGGGTTCC 61.477 72.222 0.00 0.00 0.00 3.62
106 107 1.632965 AATGGGACGGGCTAGGGTTC 61.633 60.000 0.00 0.00 0.00 3.62
107 108 1.618447 AATGGGACGGGCTAGGGTT 60.618 57.895 0.00 0.00 0.00 4.11
108 109 2.042261 AATGGGACGGGCTAGGGT 59.958 61.111 0.00 0.00 0.00 4.34
109 110 2.819284 GGAATGGGACGGGCTAGGG 61.819 68.421 0.00 0.00 0.00 3.53
110 111 1.345715 AAGGAATGGGACGGGCTAGG 61.346 60.000 0.00 0.00 0.00 3.02
111 112 0.106894 GAAGGAATGGGACGGGCTAG 59.893 60.000 0.00 0.00 0.00 3.42
112 113 1.342672 GGAAGGAATGGGACGGGCTA 61.343 60.000 0.00 0.00 0.00 3.93
113 114 2.680370 GGAAGGAATGGGACGGGCT 61.680 63.158 0.00 0.00 0.00 5.19
114 115 2.124278 GGAAGGAATGGGACGGGC 60.124 66.667 0.00 0.00 0.00 6.13
115 116 1.984288 GAGGGAAGGAATGGGACGGG 61.984 65.000 0.00 0.00 0.00 5.28
116 117 0.983378 AGAGGGAAGGAATGGGACGG 60.983 60.000 0.00 0.00 0.00 4.79
117 118 0.912486 AAGAGGGAAGGAATGGGACG 59.088 55.000 0.00 0.00 0.00 4.79
118 119 1.213182 GGAAGAGGGAAGGAATGGGAC 59.787 57.143 0.00 0.00 0.00 4.46
119 120 1.082879 AGGAAGAGGGAAGGAATGGGA 59.917 52.381 0.00 0.00 0.00 4.37
120 121 1.492599 GAGGAAGAGGGAAGGAATGGG 59.507 57.143 0.00 0.00 0.00 4.00
121 122 1.492599 GGAGGAAGAGGGAAGGAATGG 59.507 57.143 0.00 0.00 0.00 3.16
122 123 1.492599 GGGAGGAAGAGGGAAGGAATG 59.507 57.143 0.00 0.00 0.00 2.67
123 124 1.082879 TGGGAGGAAGAGGGAAGGAAT 59.917 52.381 0.00 0.00 0.00 3.01
124 125 0.496382 TGGGAGGAAGAGGGAAGGAA 59.504 55.000 0.00 0.00 0.00 3.36
125 126 0.252742 GTGGGAGGAAGAGGGAAGGA 60.253 60.000 0.00 0.00 0.00 3.36
126 127 1.275421 GGTGGGAGGAAGAGGGAAGG 61.275 65.000 0.00 0.00 0.00 3.46
127 128 0.252927 AGGTGGGAGGAAGAGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
128 129 0.547712 CAGGTGGGAGGAAGAGGGAA 60.548 60.000 0.00 0.00 0.00 3.97
129 130 1.081092 CAGGTGGGAGGAAGAGGGA 59.919 63.158 0.00 0.00 0.00 4.20
130 131 1.229658 ACAGGTGGGAGGAAGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
131 132 1.986413 CACAGGTGGGAGGAAGAGG 59.014 63.158 0.00 0.00 0.00 3.69
132 133 1.298014 GCACAGGTGGGAGGAAGAG 59.702 63.158 1.10 0.00 0.00 2.85
133 134 2.224159 GGCACAGGTGGGAGGAAGA 61.224 63.158 1.10 0.00 0.00 2.87
134 135 2.352805 GGCACAGGTGGGAGGAAG 59.647 66.667 1.10 0.00 0.00 3.46
135 136 3.636231 CGGCACAGGTGGGAGGAA 61.636 66.667 1.10 0.00 0.00 3.36
146 147 4.349503 ATGGAAGCTGGCGGCACA 62.350 61.111 22.28 16.30 44.79 4.57
147 148 3.512516 GATGGAAGCTGGCGGCAC 61.513 66.667 22.28 13.68 44.79 5.01
148 149 4.802051 GGATGGAAGCTGGCGGCA 62.802 66.667 22.28 12.58 44.79 5.69
168 169 1.324740 ACATGGTTAGCGGCTACGGA 61.325 55.000 9.68 0.00 41.36 4.69
181 182 1.863155 ATCCTTTGCCGGGACATGGT 61.863 55.000 2.18 0.00 35.51 3.55
187 188 1.784301 TTGGTGATCCTTTGCCGGGA 61.784 55.000 2.18 0.00 37.26 5.14
192 193 2.754552 TGCATAGTTGGTGATCCTTTGC 59.245 45.455 5.01 5.01 34.23 3.68
195 196 4.603131 ACATTGCATAGTTGGTGATCCTT 58.397 39.130 0.00 0.00 34.23 3.36
202 203 3.146066 ACGTCAACATTGCATAGTTGGT 58.854 40.909 23.43 15.33 43.91 3.67
206 207 1.999735 CCGACGTCAACATTGCATAGT 59.000 47.619 17.16 0.00 0.00 2.12
213 214 1.724623 CGATGTTCCGACGTCAACATT 59.275 47.619 25.99 15.12 42.15 2.71
220 221 2.025418 GCAACCGATGTTCCGACGT 61.025 57.895 0.00 0.00 30.42 4.34
222 223 0.669318 TCTGCAACCGATGTTCCGAC 60.669 55.000 0.00 0.00 30.42 4.79
223 224 0.249120 ATCTGCAACCGATGTTCCGA 59.751 50.000 0.00 0.00 30.42 4.55
226 227 1.590238 CTCGATCTGCAACCGATGTTC 59.410 52.381 5.42 0.00 30.42 3.18
230 231 0.387202 CTCCTCGATCTGCAACCGAT 59.613 55.000 5.42 0.00 0.00 4.18
231 232 1.667154 CCTCCTCGATCTGCAACCGA 61.667 60.000 4.96 4.96 0.00 4.69
240 241 0.963355 CCCGGATCTCCTCCTCGATC 60.963 65.000 0.73 0.00 42.47 3.69
241 242 1.075836 CCCGGATCTCCTCCTCGAT 59.924 63.158 0.73 0.00 42.47 3.59
247 248 3.237741 CCTGGCCCGGATCTCCTC 61.238 72.222 7.60 0.00 0.00 3.71
275 276 2.506438 GTAGACCGGCAGCGACAC 60.506 66.667 0.00 0.00 0.00 3.67
284 285 1.409427 GTGAATCTGGAGGTAGACCGG 59.591 57.143 0.00 0.00 42.08 5.28
285 286 1.409427 GGTGAATCTGGAGGTAGACCG 59.591 57.143 0.00 0.00 42.08 4.79
286 287 2.432510 CAGGTGAATCTGGAGGTAGACC 59.567 54.545 0.00 0.00 0.00 3.85
287 288 3.366396 TCAGGTGAATCTGGAGGTAGAC 58.634 50.000 0.00 0.00 35.58 2.59
288 289 3.636679 CTCAGGTGAATCTGGAGGTAGA 58.363 50.000 0.00 0.00 35.58 2.59
291 292 0.908198 GCTCAGGTGAATCTGGAGGT 59.092 55.000 0.00 0.00 35.58 3.85
297 298 1.333636 CCTCCGGCTCAGGTGAATCT 61.334 60.000 0.00 0.00 0.00 2.40
303 304 3.670629 CTCCTCCTCCGGCTCAGGT 62.671 68.421 7.51 0.00 32.20 4.00
306 307 3.347590 TCCTCCTCCTCCGGCTCA 61.348 66.667 0.00 0.00 0.00 4.26
307 308 2.520741 CTCCTCCTCCTCCGGCTC 60.521 72.222 0.00 0.00 0.00 4.70
316 317 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
321 322 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
324 325 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
327 328 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
328 329 2.612251 CCCCTCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
332 333 2.285743 GTTGCCCCTCCTCCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
334 335 1.141858 CTATTGTTGCCCCTCCTCCTC 59.858 57.143 0.00 0.00 0.00 3.71
336 337 0.466372 GCTATTGTTGCCCCTCCTCC 60.466 60.000 0.00 0.00 0.00 4.30
337 338 0.466372 GGCTATTGTTGCCCCTCCTC 60.466 60.000 0.00 0.00 44.32 3.71
344 345 0.523335 CGCTTTCGGCTATTGTTGCC 60.523 55.000 0.00 0.00 46.42 4.52
345 346 2.930168 CGCTTTCGGCTATTGTTGC 58.070 52.632 0.00 0.00 39.13 4.17
385 386 2.158445 CCGAATCCTCTTCCTCCTCCTA 60.158 54.545 0.00 0.00 0.00 2.94
425 426 4.475135 GTTGCTCCTCCTCCGGCC 62.475 72.222 0.00 0.00 0.00 6.13
428 429 1.439644 GCTAGTTGCTCCTCCTCCG 59.560 63.158 0.00 0.00 38.95 4.63
468 469 0.107703 CCTCAAACTCCGCTATGGCA 60.108 55.000 0.74 0.00 38.60 4.92
471 472 1.560923 CGACCTCAAACTCCGCTATG 58.439 55.000 0.00 0.00 0.00 2.23
474 475 2.048127 GCGACCTCAAACTCCGCT 60.048 61.111 0.00 0.00 42.24 5.52
494 495 2.819984 TTTGCTCCGCCATCTCCACC 62.820 60.000 0.00 0.00 0.00 4.61
495 496 1.377202 TTTGCTCCGCCATCTCCAC 60.377 57.895 0.00 0.00 0.00 4.02
496 497 1.377202 GTTTGCTCCGCCATCTCCA 60.377 57.895 0.00 0.00 0.00 3.86
497 498 2.115291 GGTTTGCTCCGCCATCTCC 61.115 63.158 0.00 0.00 0.00 3.71
498 499 2.464459 CGGTTTGCTCCGCCATCTC 61.464 63.158 3.11 0.00 43.96 2.75
541 543 1.281867 CCTTTGGACTCCACATAGGCA 59.718 52.381 0.00 0.00 37.29 4.75
559 561 2.124819 CTGCCAGATGAAGCGCCT 60.125 61.111 2.29 0.00 0.00 5.52
603 606 3.735514 GCATCTCGTCCAAACTAGAGACC 60.736 52.174 0.00 0.00 41.77 3.85
605 608 3.089284 TGCATCTCGTCCAAACTAGAGA 58.911 45.455 0.00 0.00 42.93 3.10
682 688 3.422417 AATCGTCGATGATCTTCGTGT 57.578 42.857 24.94 10.93 40.03 4.49
721 736 9.953565 TGCAGATTAAAAACCTAACTACTACAT 57.046 29.630 0.00 0.00 0.00 2.29
722 737 9.953565 ATGCAGATTAAAAACCTAACTACTACA 57.046 29.630 0.00 0.00 0.00 2.74
729 744 5.965922 AGCCATGCAGATTAAAAACCTAAC 58.034 37.500 0.00 0.00 0.00 2.34
730 745 6.889722 ACTAGCCATGCAGATTAAAAACCTAA 59.110 34.615 0.00 0.00 0.00 2.69
735 750 7.880160 ACATACTAGCCATGCAGATTAAAAA 57.120 32.000 0.00 0.00 0.00 1.94
737 752 7.962441 TCTACATACTAGCCATGCAGATTAAA 58.038 34.615 0.00 0.00 0.00 1.52
740 755 6.617782 ATCTACATACTAGCCATGCAGATT 57.382 37.500 12.06 2.10 34.30 2.40
759 774 8.579850 AGTTGCAACCTCAAATATGAAATCTA 57.420 30.769 25.62 0.00 34.49 1.98
760 775 7.472334 AGTTGCAACCTCAAATATGAAATCT 57.528 32.000 25.62 0.00 34.49 2.40
761 776 7.412237 GCAAGTTGCAACCTCAAATATGAAATC 60.412 37.037 25.62 0.00 44.26 2.17
762 777 6.369615 GCAAGTTGCAACCTCAAATATGAAAT 59.630 34.615 25.62 0.00 44.26 2.17
763 778 5.695816 GCAAGTTGCAACCTCAAATATGAAA 59.304 36.000 25.62 0.00 44.26 2.69
764 779 5.229423 GCAAGTTGCAACCTCAAATATGAA 58.771 37.500 25.62 0.00 44.26 2.57
765 780 4.808558 GCAAGTTGCAACCTCAAATATGA 58.191 39.130 25.62 0.00 44.26 2.15
779 794 2.460757 AATCACCCATTGCAAGTTGC 57.539 45.000 21.17 21.17 45.29 4.17
780 795 4.575645 ACAAAAATCACCCATTGCAAGTTG 59.424 37.500 4.94 0.00 0.00 3.16
781 796 4.779696 ACAAAAATCACCCATTGCAAGTT 58.220 34.783 4.94 0.00 0.00 2.66
782 797 4.420522 ACAAAAATCACCCATTGCAAGT 57.579 36.364 4.94 0.00 0.00 3.16
783 798 6.164876 TCATACAAAAATCACCCATTGCAAG 58.835 36.000 4.94 0.00 0.00 4.01
784 799 6.106648 TCATACAAAAATCACCCATTGCAA 57.893 33.333 0.00 0.00 0.00 4.08
785 800 5.735285 TCATACAAAAATCACCCATTGCA 57.265 34.783 0.00 0.00 0.00 4.08
786 801 7.599998 GGATATCATACAAAAATCACCCATTGC 59.400 37.037 4.83 0.00 0.00 3.56
787 802 7.809331 CGGATATCATACAAAAATCACCCATTG 59.191 37.037 4.83 0.00 0.00 2.82
788 803 7.039784 CCGGATATCATACAAAAATCACCCATT 60.040 37.037 0.00 0.00 0.00 3.16
789 804 6.434028 CCGGATATCATACAAAAATCACCCAT 59.566 38.462 0.00 0.00 0.00 4.00
790 805 5.767665 CCGGATATCATACAAAAATCACCCA 59.232 40.000 0.00 0.00 0.00 4.51
791 806 5.768164 ACCGGATATCATACAAAAATCACCC 59.232 40.000 9.46 0.00 0.00 4.61
792 807 6.485313 TGACCGGATATCATACAAAAATCACC 59.515 38.462 9.46 0.00 0.00 4.02
793 808 7.226720 AGTGACCGGATATCATACAAAAATCAC 59.773 37.037 9.46 5.44 0.00 3.06
794 809 7.279615 AGTGACCGGATATCATACAAAAATCA 58.720 34.615 9.46 0.00 0.00 2.57
795 810 7.730364 AGTGACCGGATATCATACAAAAATC 57.270 36.000 9.46 0.00 0.00 2.17
796 811 9.436957 GATAGTGACCGGATATCATACAAAAAT 57.563 33.333 9.46 0.00 0.00 1.82
797 812 8.647796 AGATAGTGACCGGATATCATACAAAAA 58.352 33.333 9.46 0.00 0.00 1.94
798 813 8.088365 CAGATAGTGACCGGATATCATACAAAA 58.912 37.037 9.46 0.00 0.00 2.44
799 814 7.602753 CAGATAGTGACCGGATATCATACAAA 58.397 38.462 9.46 0.00 0.00 2.83
800 815 6.350194 GCAGATAGTGACCGGATATCATACAA 60.350 42.308 9.46 0.00 0.00 2.41
801 816 5.125578 GCAGATAGTGACCGGATATCATACA 59.874 44.000 9.46 0.00 0.00 2.29
802 817 5.583495 GCAGATAGTGACCGGATATCATAC 58.417 45.833 9.46 0.00 0.00 2.39
803 818 4.335594 CGCAGATAGTGACCGGATATCATA 59.664 45.833 9.46 0.00 0.00 2.15
804 819 3.129462 CGCAGATAGTGACCGGATATCAT 59.871 47.826 9.46 0.00 0.00 2.45
805 820 2.488153 CGCAGATAGTGACCGGATATCA 59.512 50.000 9.46 0.00 0.00 2.15
806 821 2.159366 CCGCAGATAGTGACCGGATATC 60.159 54.545 9.46 10.29 41.34 1.63
807 822 1.819288 CCGCAGATAGTGACCGGATAT 59.181 52.381 9.46 0.11 41.34 1.63
808 823 1.202842 TCCGCAGATAGTGACCGGATA 60.203 52.381 9.46 0.00 42.51 2.59
809 824 0.467474 TCCGCAGATAGTGACCGGAT 60.467 55.000 9.46 0.00 42.51 4.18
810 825 1.077285 TCCGCAGATAGTGACCGGA 60.077 57.895 9.46 0.00 44.85 5.14
811 826 1.065928 GTCCGCAGATAGTGACCGG 59.934 63.158 0.00 0.00 40.25 5.28
812 827 0.385751 ATGTCCGCAGATAGTGACCG 59.614 55.000 0.00 0.00 0.00 4.79
813 828 3.367498 GGATATGTCCGCAGATAGTGACC 60.367 52.174 0.00 0.00 34.13 4.02
814 829 3.839293 GGATATGTCCGCAGATAGTGAC 58.161 50.000 0.00 0.00 34.13 3.67
826 841 1.213094 CGAACACGCCGGATATGTCC 61.213 60.000 5.05 0.00 41.40 4.02
827 842 1.818221 GCGAACACGCCGGATATGTC 61.818 60.000 5.05 0.00 45.62 3.06
828 843 1.881252 GCGAACACGCCGGATATGT 60.881 57.895 5.05 2.00 45.62 2.29
829 844 2.928361 GCGAACACGCCGGATATG 59.072 61.111 5.05 1.21 45.62 1.78
839 854 2.431260 TAACGAGCCCGCGAACAC 60.431 61.111 8.23 0.00 39.95 3.32
840 855 2.126228 CTAACGAGCCCGCGAACA 60.126 61.111 8.23 0.00 39.95 3.18
841 856 2.884207 CCTAACGAGCCCGCGAAC 60.884 66.667 8.23 0.00 39.95 3.95
842 857 4.137872 CCCTAACGAGCCCGCGAA 62.138 66.667 8.23 0.00 39.95 4.70
845 860 4.832608 CACCCCTAACGAGCCCGC 62.833 72.222 0.00 0.00 39.95 6.13
846 861 4.157120 CCACCCCTAACGAGCCCG 62.157 72.222 0.00 0.00 42.50 6.13
847 862 3.793888 CCCACCCCTAACGAGCCC 61.794 72.222 0.00 0.00 0.00 5.19
848 863 2.133359 AAACCCACCCCTAACGAGCC 62.133 60.000 0.00 0.00 0.00 4.70
849 864 0.251033 AAAACCCACCCCTAACGAGC 60.251 55.000 0.00 0.00 0.00 5.03
850 865 1.530323 CAAAACCCACCCCTAACGAG 58.470 55.000 0.00 0.00 0.00 4.18
851 866 0.537828 GCAAAACCCACCCCTAACGA 60.538 55.000 0.00 0.00 0.00 3.85
852 867 0.824182 TGCAAAACCCACCCCTAACG 60.824 55.000 0.00 0.00 0.00 3.18
853 868 1.639722 ATGCAAAACCCACCCCTAAC 58.360 50.000 0.00 0.00 0.00 2.34
854 869 3.767309 ATATGCAAAACCCACCCCTAA 57.233 42.857 0.00 0.00 0.00 2.69
855 870 3.370104 CAATATGCAAAACCCACCCCTA 58.630 45.455 0.00 0.00 0.00 3.53
856 871 2.187100 CAATATGCAAAACCCACCCCT 58.813 47.619 0.00 0.00 0.00 4.79
857 872 1.406751 GCAATATGCAAAACCCACCCC 60.407 52.381 0.00 0.00 44.26 4.95
858 873 1.738700 CGCAATATGCAAAACCCACCC 60.739 52.381 2.99 0.00 45.36 4.61
859 874 1.203523 TCGCAATATGCAAAACCCACC 59.796 47.619 2.99 0.00 45.36 4.61
860 875 2.645730 TCGCAATATGCAAAACCCAC 57.354 45.000 2.99 0.00 45.36 4.61
861 876 3.056250 ACAATCGCAATATGCAAAACCCA 60.056 39.130 2.99 0.00 45.36 4.51
862 877 3.520569 ACAATCGCAATATGCAAAACCC 58.479 40.909 2.99 0.00 45.36 4.11
863 878 5.577835 TCTACAATCGCAATATGCAAAACC 58.422 37.500 2.99 0.00 45.36 3.27
864 879 8.070171 AGTATCTACAATCGCAATATGCAAAAC 58.930 33.333 2.99 0.00 45.36 2.43
865 880 8.153479 AGTATCTACAATCGCAATATGCAAAA 57.847 30.769 2.99 0.00 45.36 2.44
866 881 7.728847 AGTATCTACAATCGCAATATGCAAA 57.271 32.000 2.99 0.00 45.36 3.68
867 882 7.351414 GAGTATCTACAATCGCAATATGCAA 57.649 36.000 2.99 0.00 45.36 4.08
868 883 6.951256 GAGTATCTACAATCGCAATATGCA 57.049 37.500 2.99 0.00 45.36 3.96
893 908 9.226606 TGAGTGACGAAAGGAAATTTATATGTT 57.773 29.630 0.00 0.00 0.00 2.71
894 909 8.786826 TGAGTGACGAAAGGAAATTTATATGT 57.213 30.769 0.00 0.00 0.00 2.29
898 913 9.667107 TTCTATGAGTGACGAAAGGAAATTTAT 57.333 29.630 0.00 0.00 0.00 1.40
899 914 9.496873 TTTCTATGAGTGACGAAAGGAAATTTA 57.503 29.630 0.00 0.00 0.00 1.40
900 915 7.979444 TTCTATGAGTGACGAAAGGAAATTT 57.021 32.000 0.00 0.00 0.00 1.82
901 916 7.979444 TTTCTATGAGTGACGAAAGGAAATT 57.021 32.000 0.00 0.00 0.00 1.82
902 917 7.979444 TTTTCTATGAGTGACGAAAGGAAAT 57.021 32.000 0.00 0.00 0.00 2.17
936 951 1.339610 CCACTTGTTGCCCAATTTCGA 59.660 47.619 0.00 0.00 31.20 3.71
939 954 0.249826 CGCCACTTGTTGCCCAATTT 60.250 50.000 0.00 0.00 31.20 1.82
1120 1762 4.919868 CATTTCGCGCGCGTAGGC 62.920 66.667 46.54 13.70 40.74 3.93
1132 1774 1.683790 CTGGTCGACGTCGCCATTTC 61.684 60.000 36.41 21.75 41.79 2.17
1570 2242 3.453559 AGGTCGGCCTAATTGAACG 57.546 52.632 6.89 0.00 44.90 3.95
1616 2297 3.967734 CGTATGAACGCCAACAAGG 57.032 52.632 0.00 0.00 43.12 3.61
1707 2388 8.960591 CACAATACCATTCTCCTCTGTATTTTT 58.039 33.333 0.00 0.00 31.59 1.94
1717 2398 1.559682 ACGGCACAATACCATTCTCCT 59.440 47.619 0.00 0.00 0.00 3.69
1725 2406 1.076332 GACTCACACGGCACAATACC 58.924 55.000 0.00 0.00 0.00 2.73
1734 2415 3.314553 AGTCGTTTAATGACTCACACGG 58.685 45.455 13.48 0.00 40.22 4.94
1736 2417 4.143389 CGGAAGTCGTTTAATGACTCACAC 60.143 45.833 18.66 11.08 43.24 3.82
1995 2687 2.945456 ACAGAAACCCAGGAAAAGGAC 58.055 47.619 0.00 0.00 0.00 3.85
2123 2824 9.984190 CCTTATATTTCTTTACAGAGGGAGTAC 57.016 37.037 0.00 0.00 0.00 2.73
2124 2825 9.155785 CCCTTATATTTCTTTACAGAGGGAGTA 57.844 37.037 0.00 0.00 43.15 2.59
2125 2826 7.420330 GCCCTTATATTTCTTTACAGAGGGAGT 60.420 40.741 8.71 0.00 43.15 3.85
2126 2827 6.937465 GCCCTTATATTTCTTTACAGAGGGAG 59.063 42.308 8.71 0.00 43.15 4.30
2127 2828 6.463897 CGCCCTTATATTTCTTTACAGAGGGA 60.464 42.308 8.71 0.00 43.15 4.20
2128 2829 5.701290 CGCCCTTATATTTCTTTACAGAGGG 59.299 44.000 0.00 0.00 43.30 4.30
2129 2830 6.289064 ACGCCCTTATATTTCTTTACAGAGG 58.711 40.000 0.00 0.00 0.00 3.69
2130 2831 7.787725 AACGCCCTTATATTTCTTTACAGAG 57.212 36.000 0.00 0.00 0.00 3.35
2131 2832 9.321562 CTAAACGCCCTTATATTTCTTTACAGA 57.678 33.333 0.00 0.00 0.00 3.41
2132 2833 9.321562 TCTAAACGCCCTTATATTTCTTTACAG 57.678 33.333 0.00 0.00 0.00 2.74
2133 2834 9.841295 ATCTAAACGCCCTTATATTTCTTTACA 57.159 29.630 0.00 0.00 0.00 2.41
2136 2837 8.974060 TGATCTAAACGCCCTTATATTTCTTT 57.026 30.769 0.00 0.00 0.00 2.52
2137 2838 8.211629 ACTGATCTAAACGCCCTTATATTTCTT 58.788 33.333 0.00 0.00 0.00 2.52
2138 2839 7.736893 ACTGATCTAAACGCCCTTATATTTCT 58.263 34.615 0.00 0.00 0.00 2.52
2139 2840 7.964604 ACTGATCTAAACGCCCTTATATTTC 57.035 36.000 0.00 0.00 0.00 2.17
2140 2841 8.648693 ACTACTGATCTAAACGCCCTTATATTT 58.351 33.333 0.00 0.00 0.00 1.40
2141 2842 8.088981 CACTACTGATCTAAACGCCCTTATATT 58.911 37.037 0.00 0.00 0.00 1.28
2142 2843 7.450634 TCACTACTGATCTAAACGCCCTTATAT 59.549 37.037 0.00 0.00 0.00 0.86
2143 2844 6.774170 TCACTACTGATCTAAACGCCCTTATA 59.226 38.462 0.00 0.00 0.00 0.98
2144 2845 5.597182 TCACTACTGATCTAAACGCCCTTAT 59.403 40.000 0.00 0.00 0.00 1.73
2145 2846 4.951715 TCACTACTGATCTAAACGCCCTTA 59.048 41.667 0.00 0.00 0.00 2.69
2146 2847 3.767673 TCACTACTGATCTAAACGCCCTT 59.232 43.478 0.00 0.00 0.00 3.95
2147 2848 3.362706 TCACTACTGATCTAAACGCCCT 58.637 45.455 0.00 0.00 0.00 5.19
2148 2849 3.795623 TCACTACTGATCTAAACGCCC 57.204 47.619 0.00 0.00 0.00 6.13
2158 2859 3.961408 AGGGCGTTTAGATCACTACTGAT 59.039 43.478 0.00 0.00 40.07 2.90
2159 2860 3.362706 AGGGCGTTTAGATCACTACTGA 58.637 45.455 0.00 0.00 0.00 3.41
2160 2861 3.802948 AGGGCGTTTAGATCACTACTG 57.197 47.619 0.00 0.00 0.00 2.74
2161 2862 7.778185 ATATAAGGGCGTTTAGATCACTACT 57.222 36.000 0.00 0.00 0.00 2.57
2162 2863 8.828688 AAATATAAGGGCGTTTAGATCACTAC 57.171 34.615 0.00 0.00 0.00 2.73
2163 2864 8.867097 AGAAATATAAGGGCGTTTAGATCACTA 58.133 33.333 0.00 0.00 0.00 2.74
2164 2865 7.736893 AGAAATATAAGGGCGTTTAGATCACT 58.263 34.615 0.00 0.00 0.00 3.41
2165 2866 7.964604 AGAAATATAAGGGCGTTTAGATCAC 57.035 36.000 0.00 0.00 0.00 3.06
2166 2867 8.974060 AAAGAAATATAAGGGCGTTTAGATCA 57.026 30.769 0.00 0.00 0.00 2.92
2169 2870 9.760077 CTCTAAAGAAATATAAGGGCGTTTAGA 57.240 33.333 0.00 0.00 35.21 2.10
2170 2871 8.989980 CCTCTAAAGAAATATAAGGGCGTTTAG 58.010 37.037 0.00 0.00 0.00 1.85
2171 2872 7.935210 CCCTCTAAAGAAATATAAGGGCGTTTA 59.065 37.037 0.00 0.00 35.89 2.01
2172 2873 6.771267 CCCTCTAAAGAAATATAAGGGCGTTT 59.229 38.462 0.00 0.00 35.89 3.60
2173 2874 6.100714 TCCCTCTAAAGAAATATAAGGGCGTT 59.899 38.462 0.00 0.00 41.49 4.84
2174 2875 5.605488 TCCCTCTAAAGAAATATAAGGGCGT 59.395 40.000 0.00 0.00 41.49 5.68
2175 2876 6.110411 TCCCTCTAAAGAAATATAAGGGCG 57.890 41.667 0.00 0.00 41.49 6.13
2176 2877 7.080653 ACTCCCTCTAAAGAAATATAAGGGC 57.919 40.000 0.00 0.00 41.49 5.19
2177 2878 9.382307 ACTACTCCCTCTAAAGAAATATAAGGG 57.618 37.037 0.00 0.00 42.81 3.95
2192 2893 9.011095 GTGCTTTTAATTTTTACTACTCCCTCT 57.989 33.333 0.00 0.00 0.00 3.69
2193 2894 9.011095 AGTGCTTTTAATTTTTACTACTCCCTC 57.989 33.333 0.00 0.00 0.00 4.30
2194 2895 8.793592 CAGTGCTTTTAATTTTTACTACTCCCT 58.206 33.333 0.00 0.00 0.00 4.20
2195 2896 8.789762 TCAGTGCTTTTAATTTTTACTACTCCC 58.210 33.333 0.00 0.00 0.00 4.30
2196 2897 9.827411 CTCAGTGCTTTTAATTTTTACTACTCC 57.173 33.333 0.00 0.00 0.00 3.85
2197 2898 9.827411 CCTCAGTGCTTTTAATTTTTACTACTC 57.173 33.333 0.00 0.00 0.00 2.59
2268 2969 4.202010 GCATTTTTGACACCACACACTAGT 60.202 41.667 0.00 0.00 0.00 2.57
2269 2970 4.036734 AGCATTTTTGACACCACACACTAG 59.963 41.667 0.00 0.00 0.00 2.57
2270 2971 3.951037 AGCATTTTTGACACCACACACTA 59.049 39.130 0.00 0.00 0.00 2.74
2271 2972 2.760092 AGCATTTTTGACACCACACACT 59.240 40.909 0.00 0.00 0.00 3.55
2272 2973 3.115554 GAGCATTTTTGACACCACACAC 58.884 45.455 0.00 0.00 0.00 3.82
2273 2974 3.023119 AGAGCATTTTTGACACCACACA 58.977 40.909 0.00 0.00 0.00 3.72
2274 2975 3.715628 AGAGCATTTTTGACACCACAC 57.284 42.857 0.00 0.00 0.00 3.82
2275 2976 7.701539 ATATAAGAGCATTTTTGACACCACA 57.298 32.000 0.00 0.00 0.00 4.17
2278 2979 9.683069 CCATAATATAAGAGCATTTTTGACACC 57.317 33.333 0.00 0.00 0.00 4.16
2279 2980 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
2280 2981 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
2283 2984 9.865321 CCATCCCATAATATAAGAGCATTTTTG 57.135 33.333 0.00 0.00 0.00 2.44
2284 2985 9.827198 TCCATCCCATAATATAAGAGCATTTTT 57.173 29.630 0.00 0.00 0.00 1.94
2285 2986 9.471702 CTCCATCCCATAATATAAGAGCATTTT 57.528 33.333 0.00 0.00 0.00 1.82
2286 2987 8.057623 CCTCCATCCCATAATATAAGAGCATTT 58.942 37.037 0.00 0.00 0.00 2.32
2287 2988 7.367186 CCCTCCATCCCATAATATAAGAGCATT 60.367 40.741 0.00 0.00 0.00 3.56
2288 2989 6.102321 CCCTCCATCCCATAATATAAGAGCAT 59.898 42.308 0.00 0.00 0.00 3.79
2289 2990 5.429762 CCCTCCATCCCATAATATAAGAGCA 59.570 44.000 0.00 0.00 0.00 4.26
2290 2991 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
2291 2992 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
2292 2993 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
2293 2994 7.037297 ACAACTCCCTCCATCCCATAATATAAG 60.037 40.741 0.00 0.00 0.00 1.73
2294 2995 6.797540 ACAACTCCCTCCATCCCATAATATAA 59.202 38.462 0.00 0.00 0.00 0.98
2295 2996 6.339220 ACAACTCCCTCCATCCCATAATATA 58.661 40.000 0.00 0.00 0.00 0.86
2296 2997 5.173246 ACAACTCCCTCCATCCCATAATAT 58.827 41.667 0.00 0.00 0.00 1.28
2297 2998 4.577096 ACAACTCCCTCCATCCCATAATA 58.423 43.478 0.00 0.00 0.00 0.98
2298 2999 3.407209 ACAACTCCCTCCATCCCATAAT 58.593 45.455 0.00 0.00 0.00 1.28
2299 3000 2.858644 ACAACTCCCTCCATCCCATAA 58.141 47.619 0.00 0.00 0.00 1.90
2300 3001 2.509548 CAACAACTCCCTCCATCCCATA 59.490 50.000 0.00 0.00 0.00 2.74
2301 3002 1.285962 CAACAACTCCCTCCATCCCAT 59.714 52.381 0.00 0.00 0.00 4.00
2302 3003 0.698238 CAACAACTCCCTCCATCCCA 59.302 55.000 0.00 0.00 0.00 4.37
2303 3004 0.991920 TCAACAACTCCCTCCATCCC 59.008 55.000 0.00 0.00 0.00 3.85
2304 3005 2.879103 TTCAACAACTCCCTCCATCC 57.121 50.000 0.00 0.00 0.00 3.51
2305 3006 2.489722 GCTTTCAACAACTCCCTCCATC 59.510 50.000 0.00 0.00 0.00 3.51
2306 3007 2.108952 AGCTTTCAACAACTCCCTCCAT 59.891 45.455 0.00 0.00 0.00 3.41
2307 3008 1.494721 AGCTTTCAACAACTCCCTCCA 59.505 47.619 0.00 0.00 0.00 3.86
2308 3009 2.155279 GAGCTTTCAACAACTCCCTCC 58.845 52.381 0.00 0.00 0.00 4.30
2309 3010 2.851195 TGAGCTTTCAACAACTCCCTC 58.149 47.619 0.00 0.00 0.00 4.30
2310 3011 3.152341 CATGAGCTTTCAACAACTCCCT 58.848 45.455 0.00 0.00 0.00 4.20
2311 3012 2.887152 ACATGAGCTTTCAACAACTCCC 59.113 45.455 0.00 0.00 0.00 4.30
2312 3013 3.565482 TGACATGAGCTTTCAACAACTCC 59.435 43.478 0.00 0.00 0.00 3.85
2313 3014 4.818534 TGACATGAGCTTTCAACAACTC 57.181 40.909 0.00 0.00 0.00 3.01
2314 3015 5.764686 TGTATGACATGAGCTTTCAACAACT 59.235 36.000 0.00 0.00 0.00 3.16
2315 3016 6.000891 TGTATGACATGAGCTTTCAACAAC 57.999 37.500 0.00 0.00 0.00 3.32
2316 3017 6.656270 AGATGTATGACATGAGCTTTCAACAA 59.344 34.615 0.00 0.00 39.27 2.83
2317 3018 6.175471 AGATGTATGACATGAGCTTTCAACA 58.825 36.000 0.00 0.90 39.27 3.33
2349 3050 4.734398 AGAAACAACTGGCAAACATGAA 57.266 36.364 0.00 0.00 0.00 2.57
2490 3191 3.267031 AGGGAGAAAAGATAACCTGGGTG 59.733 47.826 0.00 0.00 0.00 4.61
3150 4223 1.817941 GCCCCGACGTGCAATACAT 60.818 57.895 0.00 0.00 0.00 2.29
3274 4347 4.927267 TTTTGAGTGGGATGGACTACAT 57.073 40.909 0.00 0.00 44.18 2.29
3436 4512 9.480053 GATGAATTGTCATTCCTTTTCTCAAAA 57.520 29.630 0.00 0.00 44.83 2.44
3608 4684 2.038952 TGGCCATTGGATATCCTCTTCG 59.961 50.000 22.35 7.53 36.82 3.79
3800 4887 5.072055 TCATTCATTGGAGCTGAGAAAACA 58.928 37.500 0.00 0.00 0.00 2.83
4115 5202 9.352784 CTTTGCATAATTTTTAGATCGACCAAA 57.647 29.630 0.00 0.00 0.00 3.28
4349 5588 4.142816 CGAAACTTGCTTCCTGTTCATAGG 60.143 45.833 0.00 0.00 39.29 2.57
4436 5675 1.134521 TCTGGGTCTGTTGTGACACAC 60.135 52.381 8.05 4.59 44.40 3.82
4514 5753 8.181904 ACATGAATAAATGAGGAACACACTTT 57.818 30.769 0.00 0.00 0.00 2.66
4529 5768 6.154203 TGCAACAACTGGAACATGAATAAA 57.846 33.333 0.00 0.00 38.20 1.40
4803 6042 9.226606 CACAAAGTATAAACTTGTATTCCCTGA 57.773 33.333 0.00 0.00 45.37 3.86
4810 6049 9.787435 TCCAGAACACAAAGTATAAACTTGTAT 57.213 29.630 0.00 0.00 45.37 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.