Multiple sequence alignment - TraesCS7D01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G273600 chr7D 100.000 5786 0 0 1 5786 263971273 263977058 0.000000e+00 10685.0
1 TraesCS7D01G273600 chr7D 90.000 280 21 6 1 277 580170417 580170692 7.130000e-94 355.0
2 TraesCS7D01G273600 chr7D 95.556 90 3 1 3883 3972 238998593 238998505 6.040000e-30 143.0
3 TraesCS7D01G273600 chr7D 95.556 90 3 1 3883 3972 239380310 239380222 6.040000e-30 143.0
4 TraesCS7D01G273600 chr7D 93.684 95 3 3 3883 3977 334858078 334858169 7.820000e-29 139.0
5 TraesCS7D01G273600 chr7B 89.713 2401 112 47 294 2652 244290738 244293045 0.000000e+00 2940.0
6 TraesCS7D01G273600 chr7B 93.995 1532 63 10 3966 5496 244294301 244295804 0.000000e+00 2292.0
7 TraesCS7D01G273600 chr7B 94.416 591 32 1 3069 3658 244293576 244294166 0.000000e+00 907.0
8 TraesCS7D01G273600 chr7B 95.740 446 15 2 2649 3094 244293111 244293552 0.000000e+00 715.0
9 TraesCS7D01G273600 chr7B 91.985 262 18 3 5525 5786 244297723 244297981 1.180000e-96 364.0
10 TraesCS7D01G273600 chr7B 90.106 283 22 4 1 283 74585993 74585717 4.260000e-96 363.0
11 TraesCS7D01G273600 chr7B 94.326 141 8 0 3742 3882 244294165 244294305 3.510000e-52 217.0
12 TraesCS7D01G273600 chr7B 95.745 94 3 1 3653 3746 559528309 559528217 3.610000e-32 150.0
13 TraesCS7D01G273600 chr7A 87.866 1467 72 47 282 1699 287237916 287239325 0.000000e+00 1626.0
14 TraesCS7D01G273600 chr7A 93.666 1042 50 5 3966 5004 287241766 287242794 0.000000e+00 1544.0
15 TraesCS7D01G273600 chr7A 95.212 919 34 5 1740 2652 287239330 287240244 0.000000e+00 1445.0
16 TraesCS7D01G273600 chr7A 94.486 671 28 8 2994 3659 287240957 287241623 0.000000e+00 1026.0
17 TraesCS7D01G273600 chr7A 91.033 368 20 3 2651 3008 287240312 287240676 8.720000e-133 484.0
18 TraesCS7D01G273600 chr7A 85.900 461 41 17 5109 5558 287243021 287243468 2.440000e-128 470.0
19 TraesCS7D01G273600 chr7A 88.489 139 11 3 3741 3874 287241624 287241762 4.640000e-36 163.0
20 TraesCS7D01G273600 chr7A 97.590 83 2 0 3883 3965 542815900 542815818 6.040000e-30 143.0
21 TraesCS7D01G273600 chr7A 100.000 31 0 0 5753 5783 699144532 699144562 2.250000e-04 58.4
22 TraesCS7D01G273600 chr7A 100.000 31 0 0 5753 5783 699160520 699160490 2.250000e-04 58.4
23 TraesCS7D01G273600 chr2D 97.213 287 6 1 1 287 55388439 55388155 8.720000e-133 484.0
24 TraesCS7D01G273600 chr2D 94.382 89 3 2 3886 3973 172820981 172820894 1.010000e-27 135.0
25 TraesCS7D01G273600 chr6D 97.153 281 5 3 1 280 473514324 473514602 6.790000e-129 472.0
26 TraesCS7D01G273600 chr5A 94.224 277 8 5 3 279 36023397 36023129 3.230000e-112 416.0
27 TraesCS7D01G273600 chr5A 95.402 87 4 0 3883 3969 141878786 141878872 7.820000e-29 139.0
28 TraesCS7D01G273600 chr5D 92.391 276 17 4 3 277 550983717 550983989 1.950000e-104 390.0
29 TraesCS7D01G273600 chr5D 87.273 275 29 4 5 275 440967900 440968172 5.630000e-80 309.0
30 TraesCS7D01G273600 chr5D 86.022 279 31 6 3 277 382094521 382094795 5.670000e-75 292.0
31 TraesCS7D01G273600 chr5D 86.909 275 17 5 3 277 407777548 407777803 2.040000e-74 291.0
32 TraesCS7D01G273600 chr5D 86.641 262 26 7 6 261 540082487 540082229 1.230000e-71 281.0
33 TraesCS7D01G273600 chr5D 86.640 247 22 5 31 276 446080247 446080483 4.450000e-66 263.0
34 TraesCS7D01G273600 chr1B 91.579 285 16 4 3 285 264764558 264764280 2.530000e-103 387.0
35 TraesCS7D01G273600 chr1B 89.189 111 7 4 3657 3764 165545727 165545619 3.640000e-27 134.0
36 TraesCS7D01G273600 chr5B 91.822 269 19 3 12 280 507687363 507687098 7.080000e-99 372.0
37 TraesCS7D01G273600 chr5B 100.000 29 0 0 5758 5786 607878255 607878227 3.000000e-03 54.7
38 TraesCS7D01G273600 chr3D 90.647 278 21 4 3 280 481517370 481517098 1.180000e-96 364.0
39 TraesCS7D01G273600 chr3D 90.288 278 22 4 3 280 132927899 132927627 5.510000e-95 359.0
40 TraesCS7D01G273600 chr4D 83.453 278 25 8 9 281 49303312 49303051 7.490000e-59 239.0
41 TraesCS7D01G273600 chr1D 92.661 109 7 1 174 281 350617270 350617378 7.760000e-34 156.0
42 TraesCS7D01G273600 chr1D 96.429 84 3 0 3883 3966 225405227 225405310 7.820000e-29 139.0
43 TraesCS7D01G273600 chr3B 96.739 92 3 0 3656 3747 44742115 44742024 2.790000e-33 154.0
44 TraesCS7D01G273600 chr3B 94.624 93 5 0 3655 3747 44748836 44748744 1.680000e-30 145.0
45 TraesCS7D01G273600 chr6A 94.681 94 3 1 3652 3745 532655042 532655133 1.680000e-30 145.0
46 TraesCS7D01G273600 chr6A 93.814 97 4 1 3657 3753 553003194 553003288 1.680000e-30 145.0
47 TraesCS7D01G273600 chr3A 93.750 96 4 1 3655 3750 632620704 632620611 6.040000e-30 143.0
48 TraesCS7D01G273600 chr1A 93.684 95 4 1 3655 3749 28616415 28616323 2.170000e-29 141.0
49 TraesCS7D01G273600 chr1A 95.402 87 4 0 3878 3964 292774091 292774005 7.820000e-29 139.0
50 TraesCS7D01G273600 chr2A 94.444 90 4 1 3883 3971 515955364 515955453 2.810000e-28 137.0
51 TraesCS7D01G273600 chr4B 88.991 109 8 3 3656 3763 413719658 413719553 1.310000e-26 132.0
52 TraesCS7D01G273600 chr2B 100.000 28 0 0 5759 5786 72827200 72827227 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G273600 chr7D 263971273 263977058 5785 False 10685.000000 10685 100.000000 1 5786 1 chr7D.!!$F1 5785
1 TraesCS7D01G273600 chr7B 244290738 244297981 7243 False 1239.166667 2940 93.362500 294 5786 6 chr7B.!!$F1 5492
2 TraesCS7D01G273600 chr7A 287237916 287243468 5552 False 965.428571 1626 90.950286 282 5558 7 chr7A.!!$F2 5276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.114168 AGCCCAATACCACCAGCAAA 59.886 50.0 0.00 0.0 0.00 3.68 F
919 983 0.251341 GCGGCATCCCATCCCTAATT 60.251 55.0 0.00 0.0 0.00 1.40 F
1717 1790 0.396139 ACCCGGATCTTACTACGGCA 60.396 55.0 0.73 0.0 44.70 5.69 F
1948 2027 0.391130 TCTGGAATTGGAGAACGCGG 60.391 55.0 12.47 0.0 0.00 6.46 F
3659 4174 0.179029 AGGCACCGCAGTTTGTTACT 60.179 50.0 0.00 0.0 37.68 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2008 0.391130 CCGCGTTCTCCAATTCCAGA 60.391 55.0 4.92 0.0 0.00 3.86 R
1944 2023 0.737715 CCTCTTCTTCCACTTCCGCG 60.738 60.0 0.00 0.0 0.00 6.46 R
3641 4156 0.237498 GAGTAACAAACTGCGGTGCC 59.763 55.0 0.00 0.0 39.07 5.01 R
3933 4453 0.034198 TGCACTAGCCAACGCAACTA 59.966 50.0 0.00 0.0 41.13 2.24 R
4914 5447 0.178068 AAATCCCAGTGACGATCCCG 59.822 55.0 0.00 0.0 42.50 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.596801 GCACATGCAGAAAACAAAAACA 57.403 36.364 0.00 0.00 41.59 2.83
63 64 4.967437 GCACATGCAGAAAACAAAAACAA 58.033 34.783 0.00 0.00 41.59 2.83
64 65 5.388944 GCACATGCAGAAAACAAAAACAAA 58.611 33.333 0.00 0.00 41.59 2.83
65 66 5.283482 GCACATGCAGAAAACAAAAACAAAC 59.717 36.000 0.00 0.00 41.59 2.93
66 67 6.369005 CACATGCAGAAAACAAAAACAAACA 58.631 32.000 0.00 0.00 0.00 2.83
67 68 6.302786 CACATGCAGAAAACAAAAACAAACAC 59.697 34.615 0.00 0.00 0.00 3.32
68 69 5.991328 TGCAGAAAACAAAAACAAACACA 57.009 30.435 0.00 0.00 0.00 3.72
69 70 6.551385 TGCAGAAAACAAAAACAAACACAT 57.449 29.167 0.00 0.00 0.00 3.21
70 71 6.369005 TGCAGAAAACAAAAACAAACACATG 58.631 32.000 0.00 0.00 0.00 3.21
71 72 5.794448 GCAGAAAACAAAAACAAACACATGG 59.206 36.000 0.00 0.00 0.00 3.66
72 73 6.313252 CAGAAAACAAAAACAAACACATGGG 58.687 36.000 0.00 0.00 0.00 4.00
73 74 6.148480 CAGAAAACAAAAACAAACACATGGGA 59.852 34.615 0.00 0.00 0.00 4.37
74 75 6.712547 AGAAAACAAAAACAAACACATGGGAA 59.287 30.769 0.00 0.00 0.00 3.97
75 76 6.884280 AAACAAAAACAAACACATGGGAAA 57.116 29.167 0.00 0.00 0.00 3.13
76 77 6.884280 AACAAAAACAAACACATGGGAAAA 57.116 29.167 0.00 0.00 0.00 2.29
77 78 6.884280 ACAAAAACAAACACATGGGAAAAA 57.116 29.167 0.00 0.00 0.00 1.94
93 94 2.687700 AAAAAGCATGCACACACCAA 57.312 40.000 21.98 0.00 0.00 3.67
94 95 2.687700 AAAAGCATGCACACACCAAA 57.312 40.000 21.98 0.00 0.00 3.28
95 96 2.687700 AAAGCATGCACACACCAAAA 57.312 40.000 21.98 0.00 0.00 2.44
96 97 2.914695 AAGCATGCACACACCAAAAT 57.085 40.000 21.98 0.00 0.00 1.82
97 98 2.914695 AGCATGCACACACCAAAATT 57.085 40.000 21.98 0.00 0.00 1.82
98 99 2.758009 AGCATGCACACACCAAAATTC 58.242 42.857 21.98 0.00 0.00 2.17
99 100 2.102757 AGCATGCACACACCAAAATTCA 59.897 40.909 21.98 0.00 0.00 2.57
100 101 2.477375 GCATGCACACACCAAAATTCAG 59.523 45.455 14.21 0.00 0.00 3.02
101 102 2.222007 TGCACACACCAAAATTCAGC 57.778 45.000 0.00 0.00 0.00 4.26
102 103 1.202510 TGCACACACCAAAATTCAGCC 60.203 47.619 0.00 0.00 0.00 4.85
103 104 1.873486 GCACACACCAAAATTCAGCCC 60.873 52.381 0.00 0.00 0.00 5.19
104 105 1.411977 CACACACCAAAATTCAGCCCA 59.588 47.619 0.00 0.00 0.00 5.36
105 106 2.114616 ACACACCAAAATTCAGCCCAA 58.885 42.857 0.00 0.00 0.00 4.12
106 107 2.102925 ACACACCAAAATTCAGCCCAAG 59.897 45.455 0.00 0.00 0.00 3.61
107 108 2.364970 CACACCAAAATTCAGCCCAAGA 59.635 45.455 0.00 0.00 0.00 3.02
108 109 2.629617 ACACCAAAATTCAGCCCAAGAG 59.370 45.455 0.00 0.00 0.00 2.85
109 110 1.620323 ACCAAAATTCAGCCCAAGAGC 59.380 47.619 0.00 0.00 0.00 4.09
110 111 1.619827 CCAAAATTCAGCCCAAGAGCA 59.380 47.619 0.00 0.00 34.23 4.26
111 112 2.037511 CCAAAATTCAGCCCAAGAGCAA 59.962 45.455 0.00 0.00 34.23 3.91
112 113 3.494749 CCAAAATTCAGCCCAAGAGCAAA 60.495 43.478 0.00 0.00 34.23 3.68
113 114 4.128643 CAAAATTCAGCCCAAGAGCAAAA 58.871 39.130 0.00 0.00 34.23 2.44
114 115 4.628963 AAATTCAGCCCAAGAGCAAAAT 57.371 36.364 0.00 0.00 34.23 1.82
115 116 3.881937 ATTCAGCCCAAGAGCAAAATC 57.118 42.857 0.00 0.00 34.23 2.17
116 117 1.167851 TCAGCCCAAGAGCAAAATCG 58.832 50.000 0.00 0.00 34.23 3.34
117 118 1.167851 CAGCCCAAGAGCAAAATCGA 58.832 50.000 0.00 0.00 34.23 3.59
118 119 1.747355 CAGCCCAAGAGCAAAATCGAT 59.253 47.619 0.00 0.00 34.23 3.59
119 120 2.165030 CAGCCCAAGAGCAAAATCGATT 59.835 45.455 4.39 4.39 34.23 3.34
120 121 2.165030 AGCCCAAGAGCAAAATCGATTG 59.835 45.455 12.25 2.54 34.23 2.67
121 122 2.164219 GCCCAAGAGCAAAATCGATTGA 59.836 45.455 12.25 0.00 31.84 2.57
122 123 3.762779 CCCAAGAGCAAAATCGATTGAC 58.237 45.455 12.25 4.34 31.84 3.18
123 124 3.419915 CCAAGAGCAAAATCGATTGACG 58.580 45.455 12.25 4.44 44.09 4.35
124 125 2.813779 AGAGCAAAATCGATTGACGC 57.186 45.000 12.25 14.13 42.26 5.19
125 126 2.076100 AGAGCAAAATCGATTGACGCA 58.924 42.857 21.64 0.00 42.26 5.24
126 127 2.483877 AGAGCAAAATCGATTGACGCAA 59.516 40.909 21.64 0.00 42.26 4.85
127 128 3.058293 AGAGCAAAATCGATTGACGCAAA 60.058 39.130 21.64 0.00 42.26 3.68
128 129 3.637432 AGCAAAATCGATTGACGCAAAA 58.363 36.364 21.64 0.00 42.26 2.44
129 130 4.236935 AGCAAAATCGATTGACGCAAAAT 58.763 34.783 21.64 5.39 42.26 1.82
130 131 5.398169 AGCAAAATCGATTGACGCAAAATA 58.602 33.333 21.64 0.00 42.26 1.40
131 132 5.512788 AGCAAAATCGATTGACGCAAAATAG 59.487 36.000 21.64 2.48 42.26 1.73
132 133 5.275881 GCAAAATCGATTGACGCAAAATAGG 60.276 40.000 12.25 0.00 42.26 2.57
133 134 5.560966 AAATCGATTGACGCAAAATAGGT 57.439 34.783 12.25 0.00 42.26 3.08
134 135 4.536364 ATCGATTGACGCAAAATAGGTG 57.464 40.909 0.00 0.00 42.26 4.00
135 136 3.331150 TCGATTGACGCAAAATAGGTGT 58.669 40.909 0.00 0.00 42.26 4.16
136 137 3.369756 TCGATTGACGCAAAATAGGTGTC 59.630 43.478 0.00 0.00 44.05 3.67
141 142 3.670203 GACGCAAAATAGGTGTCAATCG 58.330 45.455 0.00 0.00 43.44 3.34
142 143 3.331150 ACGCAAAATAGGTGTCAATCGA 58.669 40.909 0.00 0.00 0.00 3.59
143 144 3.749088 ACGCAAAATAGGTGTCAATCGAA 59.251 39.130 0.00 0.00 0.00 3.71
144 145 4.394920 ACGCAAAATAGGTGTCAATCGAAT 59.605 37.500 0.00 0.00 0.00 3.34
145 146 4.963953 CGCAAAATAGGTGTCAATCGAATC 59.036 41.667 0.00 0.00 0.00 2.52
146 147 5.273944 GCAAAATAGGTGTCAATCGAATCC 58.726 41.667 0.00 0.00 0.00 3.01
147 148 5.163663 GCAAAATAGGTGTCAATCGAATCCA 60.164 40.000 0.00 0.00 0.00 3.41
148 149 6.624861 GCAAAATAGGTGTCAATCGAATCCAA 60.625 38.462 0.00 0.00 0.00 3.53
149 150 7.312154 CAAAATAGGTGTCAATCGAATCCAAA 58.688 34.615 0.00 0.00 0.00 3.28
150 151 6.436843 AATAGGTGTCAATCGAATCCAAAC 57.563 37.500 0.00 0.00 0.00 2.93
151 152 3.750371 AGGTGTCAATCGAATCCAAACA 58.250 40.909 0.00 0.00 0.00 2.83
152 153 3.753272 AGGTGTCAATCGAATCCAAACAG 59.247 43.478 0.00 0.00 0.00 3.16
153 154 3.492313 GTGTCAATCGAATCCAAACAGC 58.508 45.455 0.00 0.00 0.00 4.40
154 155 2.487762 TGTCAATCGAATCCAAACAGCC 59.512 45.455 0.00 0.00 0.00 4.85
155 156 2.091541 TCAATCGAATCCAAACAGCCC 58.908 47.619 0.00 0.00 0.00 5.19
156 157 1.818060 CAATCGAATCCAAACAGCCCA 59.182 47.619 0.00 0.00 0.00 5.36
157 158 2.214376 ATCGAATCCAAACAGCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
158 159 2.214376 TCGAATCCAAACAGCCCAAT 57.786 45.000 0.00 0.00 0.00 3.16
159 160 3.358111 TCGAATCCAAACAGCCCAATA 57.642 42.857 0.00 0.00 0.00 1.90
160 161 3.013921 TCGAATCCAAACAGCCCAATAC 58.986 45.455 0.00 0.00 0.00 1.89
161 162 2.099098 CGAATCCAAACAGCCCAATACC 59.901 50.000 0.00 0.00 0.00 2.73
162 163 2.917713 ATCCAAACAGCCCAATACCA 57.082 45.000 0.00 0.00 0.00 3.25
163 164 1.917872 TCCAAACAGCCCAATACCAC 58.082 50.000 0.00 0.00 0.00 4.16
164 165 0.894835 CCAAACAGCCCAATACCACC 59.105 55.000 0.00 0.00 0.00 4.61
165 166 1.626686 CAAACAGCCCAATACCACCA 58.373 50.000 0.00 0.00 0.00 4.17
166 167 1.545582 CAAACAGCCCAATACCACCAG 59.454 52.381 0.00 0.00 0.00 4.00
167 168 0.611896 AACAGCCCAATACCACCAGC 60.612 55.000 0.00 0.00 0.00 4.85
168 169 1.001020 CAGCCCAATACCACCAGCA 60.001 57.895 0.00 0.00 0.00 4.41
169 170 0.611618 CAGCCCAATACCACCAGCAA 60.612 55.000 0.00 0.00 0.00 3.91
170 171 0.114168 AGCCCAATACCACCAGCAAA 59.886 50.000 0.00 0.00 0.00 3.68
171 172 0.972883 GCCCAATACCACCAGCAAAA 59.027 50.000 0.00 0.00 0.00 2.44
172 173 1.337728 GCCCAATACCACCAGCAAAAC 60.338 52.381 0.00 0.00 0.00 2.43
173 174 1.967066 CCCAATACCACCAGCAAAACA 59.033 47.619 0.00 0.00 0.00 2.83
174 175 2.566724 CCCAATACCACCAGCAAAACAT 59.433 45.455 0.00 0.00 0.00 2.71
175 176 3.587923 CCAATACCACCAGCAAAACATG 58.412 45.455 0.00 0.00 0.00 3.21
176 177 3.257873 CCAATACCACCAGCAAAACATGA 59.742 43.478 0.00 0.00 0.00 3.07
177 178 4.236935 CAATACCACCAGCAAAACATGAC 58.763 43.478 0.00 0.00 0.00 3.06
178 179 1.774110 ACCACCAGCAAAACATGACA 58.226 45.000 0.00 0.00 0.00 3.58
179 180 1.682854 ACCACCAGCAAAACATGACAG 59.317 47.619 0.00 0.00 0.00 3.51
180 181 1.955778 CCACCAGCAAAACATGACAGA 59.044 47.619 0.00 0.00 0.00 3.41
181 182 2.361757 CCACCAGCAAAACATGACAGAA 59.638 45.455 0.00 0.00 0.00 3.02
182 183 3.181477 CCACCAGCAAAACATGACAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
183 184 4.431809 CACCAGCAAAACATGACAGAAAA 58.568 39.130 0.00 0.00 0.00 2.29
184 185 4.869297 CACCAGCAAAACATGACAGAAAAA 59.131 37.500 0.00 0.00 0.00 1.94
211 212 9.516314 AGAAAAACTACACAAATCTTAAAGCAC 57.484 29.630 0.00 0.00 0.00 4.40
212 213 9.296400 GAAAAACTACACAAATCTTAAAGCACA 57.704 29.630 0.00 0.00 0.00 4.57
213 214 9.646427 AAAAACTACACAAATCTTAAAGCACAA 57.354 25.926 0.00 0.00 0.00 3.33
214 215 9.816354 AAAACTACACAAATCTTAAAGCACAAT 57.184 25.926 0.00 0.00 0.00 2.71
215 216 9.463443 AAACTACACAAATCTTAAAGCACAATC 57.537 29.630 0.00 0.00 0.00 2.67
216 217 7.593825 ACTACACAAATCTTAAAGCACAATCC 58.406 34.615 0.00 0.00 0.00 3.01
217 218 6.403866 ACACAAATCTTAAAGCACAATCCA 57.596 33.333 0.00 0.00 0.00 3.41
218 219 6.815089 ACACAAATCTTAAAGCACAATCCAA 58.185 32.000 0.00 0.00 0.00 3.53
219 220 6.925165 ACACAAATCTTAAAGCACAATCCAAG 59.075 34.615 0.00 0.00 0.00 3.61
220 221 6.366877 CACAAATCTTAAAGCACAATCCAAGG 59.633 38.462 0.00 0.00 0.00 3.61
221 222 5.665916 AATCTTAAAGCACAATCCAAGGG 57.334 39.130 0.00 0.00 0.00 3.95
222 223 2.825532 TCTTAAAGCACAATCCAAGGGC 59.174 45.455 0.00 0.00 0.00 5.19
223 224 1.555967 TAAAGCACAATCCAAGGGCC 58.444 50.000 0.00 0.00 0.00 5.80
224 225 0.471591 AAAGCACAATCCAAGGGCCA 60.472 50.000 6.18 0.00 0.00 5.36
225 226 0.901580 AAGCACAATCCAAGGGCCAG 60.902 55.000 6.18 0.00 0.00 4.85
226 227 1.304381 GCACAATCCAAGGGCCAGA 60.304 57.895 6.18 0.00 0.00 3.86
227 228 0.899717 GCACAATCCAAGGGCCAGAA 60.900 55.000 6.18 0.00 0.00 3.02
228 229 1.631405 CACAATCCAAGGGCCAGAAA 58.369 50.000 6.18 0.00 0.00 2.52
229 230 1.969923 CACAATCCAAGGGCCAGAAAA 59.030 47.619 6.18 0.00 0.00 2.29
230 231 2.568509 CACAATCCAAGGGCCAGAAAAT 59.431 45.455 6.18 0.00 0.00 1.82
231 232 2.833943 ACAATCCAAGGGCCAGAAAATC 59.166 45.455 6.18 0.00 0.00 2.17
232 233 1.767759 ATCCAAGGGCCAGAAAATCG 58.232 50.000 6.18 0.00 0.00 3.34
233 234 0.695924 TCCAAGGGCCAGAAAATCGA 59.304 50.000 6.18 0.00 0.00 3.59
234 235 1.284785 TCCAAGGGCCAGAAAATCGAT 59.715 47.619 6.18 0.00 0.00 3.59
235 236 2.102578 CCAAGGGCCAGAAAATCGATT 58.897 47.619 6.18 4.39 0.00 3.34
236 237 2.159198 CCAAGGGCCAGAAAATCGATTG 60.159 50.000 12.25 0.00 0.00 2.67
237 238 2.754552 CAAGGGCCAGAAAATCGATTGA 59.245 45.455 12.25 0.00 0.00 2.57
238 239 2.369394 AGGGCCAGAAAATCGATTGAC 58.631 47.619 12.25 8.91 0.00 3.18
239 240 1.405463 GGGCCAGAAAATCGATTGACC 59.595 52.381 12.25 6.48 0.00 4.02
240 241 2.091541 GGCCAGAAAATCGATTGACCA 58.908 47.619 12.25 0.00 0.00 4.02
241 242 2.159379 GGCCAGAAAATCGATTGACCAC 60.159 50.000 12.25 0.31 0.00 4.16
242 243 2.487762 GCCAGAAAATCGATTGACCACA 59.512 45.455 12.25 0.00 0.00 4.17
243 244 3.057596 GCCAGAAAATCGATTGACCACAA 60.058 43.478 12.25 0.00 40.42 3.33
244 245 4.558496 GCCAGAAAATCGATTGACCACAAA 60.558 41.667 12.25 0.00 39.54 2.83
245 246 5.527951 CCAGAAAATCGATTGACCACAAAA 58.472 37.500 12.25 0.00 39.54 2.44
246 247 5.402270 CCAGAAAATCGATTGACCACAAAAC 59.598 40.000 12.25 0.00 39.54 2.43
247 248 5.976534 CAGAAAATCGATTGACCACAAAACA 59.023 36.000 12.25 0.00 39.54 2.83
248 249 6.475076 CAGAAAATCGATTGACCACAAAACAA 59.525 34.615 12.25 0.00 39.54 2.83
249 250 7.009999 CAGAAAATCGATTGACCACAAAACAAA 59.990 33.333 12.25 0.00 39.54 2.83
250 251 7.547370 AGAAAATCGATTGACCACAAAACAAAA 59.453 29.630 12.25 0.00 39.54 2.44
251 252 7.602517 AAATCGATTGACCACAAAACAAAAA 57.397 28.000 12.25 0.00 39.54 1.94
252 253 7.784633 AATCGATTGACCACAAAACAAAAAT 57.215 28.000 10.50 0.00 39.54 1.82
253 254 7.784633 ATCGATTGACCACAAAACAAAAATT 57.215 28.000 0.00 0.00 39.54 1.82
254 255 7.227992 TCGATTGACCACAAAACAAAAATTC 57.772 32.000 0.00 0.00 39.54 2.17
255 256 6.813649 TCGATTGACCACAAAACAAAAATTCA 59.186 30.769 0.00 0.00 39.54 2.57
256 257 7.009999 TCGATTGACCACAAAACAAAAATTCAG 59.990 33.333 0.00 0.00 39.54 3.02
257 258 5.793026 TGACCACAAAACAAAAATTCAGC 57.207 34.783 0.00 0.00 0.00 4.26
258 259 5.486526 TGACCACAAAACAAAAATTCAGCT 58.513 33.333 0.00 0.00 0.00 4.24
259 260 5.350914 TGACCACAAAACAAAAATTCAGCTG 59.649 36.000 7.63 7.63 0.00 4.24
260 261 5.486526 ACCACAAAACAAAAATTCAGCTGA 58.513 33.333 13.74 13.74 0.00 4.26
261 262 5.351189 ACCACAAAACAAAAATTCAGCTGAC 59.649 36.000 18.03 0.00 0.00 3.51
262 263 5.581874 CCACAAAACAAAAATTCAGCTGACT 59.418 36.000 18.03 8.67 0.00 3.41
263 264 6.455913 CCACAAAACAAAAATTCAGCTGACTG 60.456 38.462 18.03 11.15 45.95 3.51
280 281 7.542025 AGCTGACTGAAATTTAGCTAAATTGG 58.458 34.615 34.11 27.97 43.06 3.16
294 295 5.012046 AGCTAAATTGGGTTTCTTTTGGGAG 59.988 40.000 0.00 0.00 0.00 4.30
296 297 5.551305 AAATTGGGTTTCTTTTGGGAGAG 57.449 39.130 0.00 0.00 0.00 3.20
299 300 2.108250 TGGGTTTCTTTTGGGAGAGAGG 59.892 50.000 0.00 0.00 0.00 3.69
319 320 2.474735 GGTGGCATTTTGTAGTTTTGCG 59.525 45.455 0.00 0.00 34.17 4.85
388 392 1.327156 CGTGCAAAAAGGCCAAAAGTG 59.673 47.619 5.01 0.00 0.00 3.16
391 395 1.933247 CAAAAAGGCCAAAAGTGCGA 58.067 45.000 5.01 0.00 0.00 5.10
407 411 4.348656 AGTGCGATACAATGTACACGTAG 58.651 43.478 17.74 0.00 33.36 3.51
546 553 2.186350 ATCACAACGCACCGTGCATG 62.186 55.000 22.89 20.98 45.36 4.06
556 563 2.603892 GCACCGTGCATGATGATGAATC 60.604 50.000 18.79 0.00 44.26 2.52
645 658 4.320456 CGTGAGTGGCCTGGCTGT 62.320 66.667 19.68 2.93 0.00 4.40
646 659 2.670934 GTGAGTGGCCTGGCTGTG 60.671 66.667 19.68 0.00 0.00 3.66
655 668 3.957586 CTGGCTGTGGCTGTCCCA 61.958 66.667 0.00 0.00 42.79 4.37
755 790 1.679977 CCTCATTGCCACCCACTGG 60.680 63.158 0.00 0.00 44.08 4.00
756 791 1.379916 CTCATTGCCACCCACTGGA 59.620 57.895 0.00 0.00 43.95 3.86
757 792 0.962356 CTCATTGCCACCCACTGGAC 60.962 60.000 0.00 0.00 43.95 4.02
758 793 1.075482 CATTGCCACCCACTGGACT 59.925 57.895 0.00 0.00 43.95 3.85
759 794 0.962356 CATTGCCACCCACTGGACTC 60.962 60.000 0.00 0.00 43.95 3.36
760 795 2.469465 ATTGCCACCCACTGGACTCG 62.469 60.000 0.00 0.00 43.95 4.18
761 796 3.311110 GCCACCCACTGGACTCGA 61.311 66.667 0.00 0.00 43.95 4.04
762 797 2.657237 CCACCCACTGGACTCGAC 59.343 66.667 0.00 0.00 43.95 4.20
763 798 1.908793 CCACCCACTGGACTCGACT 60.909 63.158 0.00 0.00 43.95 4.18
764 799 1.587054 CACCCACTGGACTCGACTC 59.413 63.158 0.00 0.00 34.81 3.36
776 811 1.649390 CTCGACTCGACTGGACTGGG 61.649 65.000 0.00 0.00 0.00 4.45
845 884 1.667722 GCCAACTGCCCAAAAGGAG 59.332 57.895 0.00 0.00 38.24 3.69
846 885 1.667722 CCAACTGCCCAAAAGGAGC 59.332 57.895 0.00 0.00 38.24 4.70
847 886 1.114722 CCAACTGCCCAAAAGGAGCA 61.115 55.000 0.00 0.00 38.24 4.26
849 888 2.968206 CTGCCCAAAAGGAGCAGC 59.032 61.111 10.53 0.00 46.60 5.25
850 889 2.601367 TGCCCAAAAGGAGCAGCC 60.601 61.111 0.00 0.00 38.24 4.85
899 961 0.350541 AATCCTATCCCACCCCACCT 59.649 55.000 0.00 0.00 0.00 4.00
900 962 0.401979 ATCCTATCCCACCCCACCTG 60.402 60.000 0.00 0.00 0.00 4.00
901 963 2.757124 CCTATCCCACCCCACCTGC 61.757 68.421 0.00 0.00 0.00 4.85
902 964 3.087253 TATCCCACCCCACCTGCG 61.087 66.667 0.00 0.00 0.00 5.18
917 981 2.055689 CTGCGGCATCCCATCCCTAA 62.056 60.000 1.75 0.00 0.00 2.69
918 982 1.380302 GCGGCATCCCATCCCTAAT 59.620 57.895 0.00 0.00 0.00 1.73
919 983 0.251341 GCGGCATCCCATCCCTAATT 60.251 55.000 0.00 0.00 0.00 1.40
953 1017 1.007387 CCAACCTGTTTTGCGCTCC 60.007 57.895 9.73 0.00 0.00 4.70
954 1018 1.007387 CAACCTGTTTTGCGCTCCC 60.007 57.895 9.73 0.00 0.00 4.30
955 1019 1.152756 AACCTGTTTTGCGCTCCCT 60.153 52.632 9.73 0.00 0.00 4.20
956 1020 1.172812 AACCTGTTTTGCGCTCCCTC 61.173 55.000 9.73 0.00 0.00 4.30
957 1021 1.302832 CCTGTTTTGCGCTCCCTCT 60.303 57.895 9.73 0.00 0.00 3.69
958 1022 1.580845 CCTGTTTTGCGCTCCCTCTG 61.581 60.000 9.73 0.00 0.00 3.35
959 1023 2.192608 CTGTTTTGCGCTCCCTCTGC 62.193 60.000 9.73 0.00 0.00 4.26
984 1048 2.675772 GCTGCTGCTTCCTGGCTT 60.676 61.111 8.53 0.00 36.03 4.35
985 1049 2.698763 GCTGCTGCTTCCTGGCTTC 61.699 63.158 8.53 0.00 36.03 3.86
1187 1254 0.872021 GACTTCATCCTACTGCCGCG 60.872 60.000 0.00 0.00 0.00 6.46
1359 1432 2.456119 GCACATCAGCTTCCCGTCG 61.456 63.158 0.00 0.00 0.00 5.12
1486 1559 1.964373 GCTCCGCCTTTCGTTTCCA 60.964 57.895 0.00 0.00 36.19 3.53
1717 1790 0.396139 ACCCGGATCTTACTACGGCA 60.396 55.000 0.73 0.00 44.70 5.69
1729 1802 2.651455 ACTACGGCAGCTATCAGTACA 58.349 47.619 0.00 0.00 0.00 2.90
1944 2023 4.415735 GCGAAATTCTGGAATTGGAGAAC 58.584 43.478 9.00 0.00 40.57 3.01
1948 2027 0.391130 TCTGGAATTGGAGAACGCGG 60.391 55.000 12.47 0.00 0.00 6.46
1970 2049 2.317040 AGTGGAAGAAGAGGTCGTCAA 58.683 47.619 0.00 0.00 36.54 3.18
1971 2050 2.297597 AGTGGAAGAAGAGGTCGTCAAG 59.702 50.000 0.00 0.00 36.54 3.02
1972 2051 1.618837 TGGAAGAAGAGGTCGTCAAGG 59.381 52.381 0.00 0.00 36.54 3.61
1985 2067 1.301716 TCAAGGAGGAAGCACGCAC 60.302 57.895 0.00 0.00 0.00 5.34
2187 2272 1.653151 GGAAGGCCTACAACGATGAC 58.347 55.000 5.16 0.00 0.00 3.06
2353 2438 6.805760 GCATTCTCCAGAGTTTCAATCTTTTC 59.194 38.462 0.00 0.00 0.00 2.29
2354 2439 6.545504 TTCTCCAGAGTTTCAATCTTTTCG 57.454 37.500 0.00 0.00 0.00 3.46
2618 2707 9.990360 TTTTAGCTGAATGATATTATCCGTGTA 57.010 29.630 0.00 0.00 0.00 2.90
2637 2726 6.087555 CCGTGTACAATTTTGTCTTTATGTGC 59.912 38.462 0.00 0.00 42.35 4.57
2840 2998 2.496111 ACGATTTACGCAACCCTTTCA 58.504 42.857 0.00 0.00 46.94 2.69
2867 3035 4.529109 ACTCCTTCTGAAGCTAGTGAAC 57.471 45.455 17.58 0.00 0.00 3.18
2883 3051 6.920758 GCTAGTGAACAGTACCATTCAGATAG 59.079 42.308 9.14 13.38 35.55 2.08
2988 3156 5.324409 TCCTTTGCTTTCCTTGTCATGTAT 58.676 37.500 0.00 0.00 0.00 2.29
2989 3157 6.480763 TCCTTTGCTTTCCTTGTCATGTATA 58.519 36.000 0.00 0.00 0.00 1.47
2991 3159 7.121168 TCCTTTGCTTTCCTTGTCATGTATAAG 59.879 37.037 0.00 0.00 0.00 1.73
2992 3160 7.094205 CCTTTGCTTTCCTTGTCATGTATAAGT 60.094 37.037 0.00 0.00 0.00 2.24
3307 3816 8.434733 TCAATAAGCTGAGAGATGAAGAATTG 57.565 34.615 0.00 0.00 0.00 2.32
3345 3859 4.061596 GAGCTGATTCAAGGGTATGTAGC 58.938 47.826 0.00 0.00 0.00 3.58
3496 4011 6.732154 TCTCTAGTACACAGTTAACACACAC 58.268 40.000 8.61 0.00 0.00 3.82
3622 4137 3.912496 ACATGTCACTAGCAATAGCCA 57.088 42.857 0.00 0.00 43.56 4.75
3641 4156 5.867330 AGCCAGATTATTTCCTCTGATGAG 58.133 41.667 1.26 0.00 41.13 2.90
3659 4174 0.179029 AGGCACCGCAGTTTGTTACT 60.179 50.000 0.00 0.00 37.68 2.24
3660 4175 0.237498 GGCACCGCAGTTTGTTACTC 59.763 55.000 0.00 0.00 33.85 2.59
3661 4176 0.237498 GCACCGCAGTTTGTTACTCC 59.763 55.000 0.00 0.00 33.85 3.85
3662 4177 0.872388 CACCGCAGTTTGTTACTCCC 59.128 55.000 0.00 0.00 33.85 4.30
3663 4178 0.763035 ACCGCAGTTTGTTACTCCCT 59.237 50.000 0.00 0.00 33.85 4.20
3664 4179 1.270678 ACCGCAGTTTGTTACTCCCTC 60.271 52.381 0.00 0.00 33.85 4.30
3665 4180 1.439679 CGCAGTTTGTTACTCCCTCC 58.560 55.000 0.00 0.00 33.85 4.30
3666 4181 1.439679 GCAGTTTGTTACTCCCTCCG 58.560 55.000 0.00 0.00 33.85 4.63
3667 4182 1.270678 GCAGTTTGTTACTCCCTCCGT 60.271 52.381 0.00 0.00 33.85 4.69
3668 4183 2.028748 GCAGTTTGTTACTCCCTCCGTA 60.029 50.000 0.00 0.00 33.85 4.02
3669 4184 3.555586 GCAGTTTGTTACTCCCTCCGTAA 60.556 47.826 0.00 0.00 33.85 3.18
3670 4185 4.634199 CAGTTTGTTACTCCCTCCGTAAA 58.366 43.478 0.00 0.00 33.85 2.01
3671 4186 5.243207 CAGTTTGTTACTCCCTCCGTAAAT 58.757 41.667 0.00 0.00 33.85 1.40
3672 4187 5.704053 CAGTTTGTTACTCCCTCCGTAAATT 59.296 40.000 0.00 0.00 33.85 1.82
3673 4188 6.875195 CAGTTTGTTACTCCCTCCGTAAATTA 59.125 38.462 0.00 0.00 33.85 1.40
3674 4189 7.388500 CAGTTTGTTACTCCCTCCGTAAATTAA 59.612 37.037 0.00 0.00 33.85 1.40
3675 4190 8.105197 AGTTTGTTACTCCCTCCGTAAATTAAT 58.895 33.333 0.00 0.00 28.23 1.40
3676 4191 9.382275 GTTTGTTACTCCCTCCGTAAATTAATA 57.618 33.333 0.00 0.00 0.00 0.98
3683 4198 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
3684 4199 7.318141 TCCCTCCGTAAATTAATATAAGAGCG 58.682 38.462 0.00 0.00 0.00 5.03
3685 4200 7.039504 TCCCTCCGTAAATTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
3686 4201 7.601508 CCCTCCGTAAATTAATATAAGAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
3687 4202 8.985805 CCTCCGTAAATTAATATAAGAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
3739 4254 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
3756 4271 5.012768 CAGAGGGAGTAGTAAAGTTTTGGGA 59.987 44.000 0.00 0.00 0.00 4.37
3773 4288 2.027561 TGGGAATCCTGGTAAGTTGTCG 60.028 50.000 0.00 0.00 0.00 4.35
3830 4346 1.134220 TGACCCGGAAGATGTATTGGC 60.134 52.381 0.73 0.00 0.00 4.52
3831 4347 0.179056 ACCCGGAAGATGTATTGGCG 60.179 55.000 0.73 0.00 0.00 5.69
3887 4407 2.245159 CAGAAGGTGCTGTCTGTTGA 57.755 50.000 0.00 0.00 37.16 3.18
3888 4408 2.564771 CAGAAGGTGCTGTCTGTTGAA 58.435 47.619 0.00 0.00 37.16 2.69
3889 4409 2.547211 CAGAAGGTGCTGTCTGTTGAAG 59.453 50.000 0.00 0.00 37.16 3.02
3890 4410 2.171448 AGAAGGTGCTGTCTGTTGAAGT 59.829 45.455 0.00 0.00 0.00 3.01
3891 4411 1.959042 AGGTGCTGTCTGTTGAAGTG 58.041 50.000 0.00 0.00 0.00 3.16
3892 4412 1.210478 AGGTGCTGTCTGTTGAAGTGT 59.790 47.619 0.00 0.00 0.00 3.55
3893 4413 2.434336 AGGTGCTGTCTGTTGAAGTGTA 59.566 45.455 0.00 0.00 0.00 2.90
3894 4414 3.071602 AGGTGCTGTCTGTTGAAGTGTAT 59.928 43.478 0.00 0.00 0.00 2.29
3895 4415 4.283467 AGGTGCTGTCTGTTGAAGTGTATA 59.717 41.667 0.00 0.00 0.00 1.47
3896 4416 5.046304 AGGTGCTGTCTGTTGAAGTGTATAT 60.046 40.000 0.00 0.00 0.00 0.86
3897 4417 5.063944 GGTGCTGTCTGTTGAAGTGTATATG 59.936 44.000 0.00 0.00 0.00 1.78
3898 4418 5.639506 GTGCTGTCTGTTGAAGTGTATATGT 59.360 40.000 0.00 0.00 0.00 2.29
3899 4419 5.639082 TGCTGTCTGTTGAAGTGTATATGTG 59.361 40.000 0.00 0.00 0.00 3.21
3900 4420 5.063944 GCTGTCTGTTGAAGTGTATATGTGG 59.936 44.000 0.00 0.00 0.00 4.17
3901 4421 6.353404 TGTCTGTTGAAGTGTATATGTGGA 57.647 37.500 0.00 0.00 0.00 4.02
3902 4422 6.946340 TGTCTGTTGAAGTGTATATGTGGAT 58.054 36.000 0.00 0.00 0.00 3.41
3903 4423 7.394016 TGTCTGTTGAAGTGTATATGTGGATT 58.606 34.615 0.00 0.00 0.00 3.01
3904 4424 7.334171 TGTCTGTTGAAGTGTATATGTGGATTG 59.666 37.037 0.00 0.00 0.00 2.67
3905 4425 7.334421 GTCTGTTGAAGTGTATATGTGGATTGT 59.666 37.037 0.00 0.00 0.00 2.71
3906 4426 7.549134 TCTGTTGAAGTGTATATGTGGATTGTC 59.451 37.037 0.00 0.00 0.00 3.18
3907 4427 7.394016 TGTTGAAGTGTATATGTGGATTGTCT 58.606 34.615 0.00 0.00 0.00 3.41
3908 4428 8.536175 TGTTGAAGTGTATATGTGGATTGTCTA 58.464 33.333 0.00 0.00 0.00 2.59
3909 4429 9.035607 GTTGAAGTGTATATGTGGATTGTCTAG 57.964 37.037 0.00 0.00 0.00 2.43
3910 4430 7.210174 TGAAGTGTATATGTGGATTGTCTAGC 58.790 38.462 0.00 0.00 0.00 3.42
3911 4431 6.102897 AGTGTATATGTGGATTGTCTAGCC 57.897 41.667 0.00 0.00 0.00 3.93
3912 4432 5.012148 AGTGTATATGTGGATTGTCTAGCCC 59.988 44.000 0.00 0.00 0.00 5.19
3913 4433 5.012148 GTGTATATGTGGATTGTCTAGCCCT 59.988 44.000 0.00 0.00 0.00 5.19
3914 4434 5.606749 TGTATATGTGGATTGTCTAGCCCTT 59.393 40.000 0.00 0.00 0.00 3.95
3915 4435 5.653255 ATATGTGGATTGTCTAGCCCTTT 57.347 39.130 0.00 0.00 0.00 3.11
3916 4436 3.350219 TGTGGATTGTCTAGCCCTTTC 57.650 47.619 0.00 0.00 0.00 2.62
3917 4437 2.026262 TGTGGATTGTCTAGCCCTTTCC 60.026 50.000 0.00 0.00 0.00 3.13
3918 4438 2.026262 GTGGATTGTCTAGCCCTTTCCA 60.026 50.000 0.00 0.00 0.00 3.53
3919 4439 2.852449 TGGATTGTCTAGCCCTTTCCAT 59.148 45.455 0.00 0.00 0.00 3.41
3920 4440 3.117888 TGGATTGTCTAGCCCTTTCCATC 60.118 47.826 0.00 0.00 0.00 3.51
3921 4441 3.117888 GGATTGTCTAGCCCTTTCCATCA 60.118 47.826 0.00 0.00 0.00 3.07
3922 4442 4.446889 GGATTGTCTAGCCCTTTCCATCAT 60.447 45.833 0.00 0.00 0.00 2.45
3923 4443 4.591321 TTGTCTAGCCCTTTCCATCATT 57.409 40.909 0.00 0.00 0.00 2.57
3924 4444 4.591321 TGTCTAGCCCTTTCCATCATTT 57.409 40.909 0.00 0.00 0.00 2.32
3925 4445 4.526970 TGTCTAGCCCTTTCCATCATTTC 58.473 43.478 0.00 0.00 0.00 2.17
3926 4446 3.561725 GTCTAGCCCTTTCCATCATTTCG 59.438 47.826 0.00 0.00 0.00 3.46
3927 4447 1.767759 AGCCCTTTCCATCATTTCGG 58.232 50.000 0.00 0.00 0.00 4.30
3928 4448 1.284785 AGCCCTTTCCATCATTTCGGA 59.715 47.619 0.00 0.00 0.00 4.55
3929 4449 1.405463 GCCCTTTCCATCATTTCGGAC 59.595 52.381 0.00 0.00 0.00 4.79
3930 4450 2.945890 GCCCTTTCCATCATTTCGGACT 60.946 50.000 0.00 0.00 0.00 3.85
3931 4451 3.356290 CCCTTTCCATCATTTCGGACTT 58.644 45.455 0.00 0.00 0.00 3.01
3932 4452 3.763897 CCCTTTCCATCATTTCGGACTTT 59.236 43.478 0.00 0.00 0.00 2.66
3933 4453 4.220602 CCCTTTCCATCATTTCGGACTTTT 59.779 41.667 0.00 0.00 0.00 2.27
3934 4454 5.417580 CCCTTTCCATCATTTCGGACTTTTA 59.582 40.000 0.00 0.00 0.00 1.52
3935 4455 6.404734 CCCTTTCCATCATTTCGGACTTTTAG 60.405 42.308 0.00 0.00 0.00 1.85
3936 4456 6.151144 CCTTTCCATCATTTCGGACTTTTAGT 59.849 38.462 0.00 0.00 0.00 2.24
3937 4457 7.309194 CCTTTCCATCATTTCGGACTTTTAGTT 60.309 37.037 0.00 0.00 0.00 2.24
3938 4458 6.494893 TCCATCATTTCGGACTTTTAGTTG 57.505 37.500 0.00 0.00 0.00 3.16
3939 4459 5.095490 CCATCATTTCGGACTTTTAGTTGC 58.905 41.667 0.00 0.00 0.00 4.17
3940 4460 4.398549 TCATTTCGGACTTTTAGTTGCG 57.601 40.909 0.00 0.00 0.00 4.85
3941 4461 3.810941 TCATTTCGGACTTTTAGTTGCGT 59.189 39.130 0.00 0.00 0.00 5.24
3942 4462 4.273969 TCATTTCGGACTTTTAGTTGCGTT 59.726 37.500 0.00 0.00 0.00 4.84
3943 4463 3.595709 TTCGGACTTTTAGTTGCGTTG 57.404 42.857 0.00 0.00 0.00 4.10
3944 4464 1.868498 TCGGACTTTTAGTTGCGTTGG 59.132 47.619 0.00 0.00 0.00 3.77
3945 4465 1.662026 CGGACTTTTAGTTGCGTTGGC 60.662 52.381 0.00 0.00 40.52 4.52
3946 4466 1.607148 GGACTTTTAGTTGCGTTGGCT 59.393 47.619 0.00 0.00 40.82 4.75
3947 4467 2.809696 GGACTTTTAGTTGCGTTGGCTA 59.190 45.455 0.00 0.00 40.82 3.93
3948 4468 3.120304 GGACTTTTAGTTGCGTTGGCTAG 60.120 47.826 0.00 0.00 40.82 3.42
3949 4469 3.473625 ACTTTTAGTTGCGTTGGCTAGT 58.526 40.909 0.00 0.00 40.82 2.57
3950 4470 3.250040 ACTTTTAGTTGCGTTGGCTAGTG 59.750 43.478 0.00 0.00 40.82 2.74
3951 4471 1.153353 TTAGTTGCGTTGGCTAGTGC 58.847 50.000 0.00 0.00 40.82 4.40
3952 4472 0.034198 TAGTTGCGTTGGCTAGTGCA 59.966 50.000 0.00 0.00 41.91 4.57
3953 4473 0.606401 AGTTGCGTTGGCTAGTGCAT 60.606 50.000 0.00 0.00 41.91 3.96
3954 4474 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
3955 4475 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
3956 4476 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
3957 4477 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
3958 4478 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
3959 4479 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
3960 4480 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
3961 4481 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
3962 4482 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
3963 4483 3.009723 TGGCTAGTGCATGAAGCTTAAC 58.990 45.455 14.92 0.00 45.94 2.01
3964 4484 3.009723 GGCTAGTGCATGAAGCTTAACA 58.990 45.455 14.92 0.00 45.94 2.41
4003 4523 1.846007 TGGCACCTTGTGTCACTTTT 58.154 45.000 4.27 0.00 43.49 2.27
4005 4525 2.094286 TGGCACCTTGTGTCACTTTTTG 60.094 45.455 4.27 0.00 43.49 2.44
4006 4526 2.094234 GGCACCTTGTGTCACTTTTTGT 60.094 45.455 4.27 0.00 38.14 2.83
4007 4527 3.179048 GCACCTTGTGTCACTTTTTGTC 58.821 45.455 4.27 0.00 35.75 3.18
4022 4543 6.634436 CACTTTTTGTCTGCATGTTAACTCTC 59.366 38.462 7.22 0.00 0.00 3.20
4086 4607 1.824230 TGCCATAAAATCCAGTGCCAC 59.176 47.619 0.00 0.00 0.00 5.01
4116 4637 3.265791 CCAAGCTAAAAGCATCGACTCT 58.734 45.455 1.22 0.00 45.56 3.24
4156 4677 3.717400 TCAGTGAAGCTCATATCGACC 57.283 47.619 0.00 0.00 0.00 4.79
4189 4710 1.339438 TGGAGCTTGAGTTGCTGGATC 60.339 52.381 0.00 0.00 41.30 3.36
4314 4835 3.003763 GGCACTCCCCCGTTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
4452 4973 1.673665 GCACCTGTGGGAGAAGCAG 60.674 63.158 0.00 0.00 36.25 4.24
4456 4977 1.197430 CCTGTGGGAGAAGCAGAGGT 61.197 60.000 0.00 0.00 32.39 3.85
4820 5353 3.499918 ACATTGCTTGTACAGTGAGAAGC 59.500 43.478 13.76 13.76 41.03 3.86
4821 5354 2.908688 TGCTTGTACAGTGAGAAGCA 57.091 45.000 17.24 17.24 46.49 3.91
4822 5355 3.192541 TGCTTGTACAGTGAGAAGCAA 57.807 42.857 18.22 7.84 45.88 3.91
4823 5356 2.872245 TGCTTGTACAGTGAGAAGCAAC 59.128 45.455 18.22 0.00 45.88 4.17
4824 5357 2.224314 GCTTGTACAGTGAGAAGCAACC 59.776 50.000 14.99 0.00 40.47 3.77
4825 5358 2.148916 TGTACAGTGAGAAGCAACCG 57.851 50.000 0.00 0.00 0.00 4.44
4826 5359 1.684450 TGTACAGTGAGAAGCAACCGA 59.316 47.619 0.00 0.00 0.00 4.69
4827 5360 2.059541 GTACAGTGAGAAGCAACCGAC 58.940 52.381 0.00 0.00 0.00 4.79
4828 5361 0.249911 ACAGTGAGAAGCAACCGACC 60.250 55.000 0.00 0.00 0.00 4.79
4829 5362 0.951040 CAGTGAGAAGCAACCGACCC 60.951 60.000 0.00 0.00 0.00 4.46
4830 5363 1.122019 AGTGAGAAGCAACCGACCCT 61.122 55.000 0.00 0.00 0.00 4.34
4831 5364 0.951040 GTGAGAAGCAACCGACCCTG 60.951 60.000 0.00 0.00 0.00 4.45
4930 5463 0.901114 TTTCGGGATCGTCACTGGGA 60.901 55.000 0.00 0.00 37.69 4.37
4997 5531 3.920231 TCAGATTGCCACTGCTCTTAT 57.080 42.857 0.00 0.00 38.71 1.73
5043 5732 1.468985 TCTTCTGCTCCTCCTCTTCG 58.531 55.000 0.00 0.00 0.00 3.79
5058 5747 3.036633 CTCTTCGTCAATCGTCATACCG 58.963 50.000 0.00 0.00 40.80 4.02
5065 5754 0.671796 AATCGTCATACCGATGCCGA 59.328 50.000 0.00 0.00 46.40 5.54
5099 5788 6.656693 AGATGGTTCTTTAGACAAGTGAATGG 59.343 38.462 0.00 0.00 0.00 3.16
5100 5789 5.690865 TGGTTCTTTAGACAAGTGAATGGT 58.309 37.500 0.00 0.00 0.00 3.55
5236 5934 4.398673 AGTGTAGGAAGTATGAACTCGGTC 59.601 45.833 0.00 0.00 33.75 4.79
5272 5970 4.037089 TGCATGATCCTGATACATGTTTGC 59.963 41.667 2.30 0.00 41.99 3.68
5286 5984 3.176552 TGTTTGCTTGTTCATTGTGGG 57.823 42.857 0.00 0.00 0.00 4.61
5361 6059 3.133365 AAAGGTCCTGGCACCGCTT 62.133 57.895 0.00 5.34 41.90 4.68
5380 6078 4.555313 CGCTTGCAGACTCTGATTTTTCAA 60.555 41.667 10.45 2.83 32.44 2.69
5384 6082 4.036734 TGCAGACTCTGATTTTTCAACCAC 59.963 41.667 10.45 0.00 32.44 4.16
5559 8147 9.529325 AGAAACTAAAAGCACAAATTAGGAAAC 57.471 29.630 0.00 0.00 32.25 2.78
5569 8157 5.523188 CACAAATTAGGAAACTGCAGCAAAA 59.477 36.000 15.27 0.15 43.88 2.44
5609 8197 2.489751 GGCGGCTATGGCAAACAC 59.510 61.111 2.58 0.00 40.87 3.32
5627 8215 1.158007 ACATCCCCTCCAAGGTTTGT 58.842 50.000 0.00 0.00 31.93 2.83
5639 8227 2.193536 GGTTTGTTGGCGAGCCTGT 61.194 57.895 15.75 0.00 36.94 4.00
5640 8228 1.008538 GTTTGTTGGCGAGCCTGTG 60.009 57.895 15.75 0.00 36.94 3.66
5650 8238 1.363744 CGAGCCTGTGGATTCACTTC 58.636 55.000 5.55 0.00 43.94 3.01
5678 8266 0.249238 CTACCGCTCTGACATCTGGC 60.249 60.000 0.00 0.00 0.00 4.85
5681 8269 2.581354 GCTCTGACATCTGGCGGT 59.419 61.111 0.00 0.00 0.00 5.68
5688 8276 3.083349 CATCTGGCGGTGGGGAGA 61.083 66.667 0.00 0.00 0.00 3.71
5689 8277 2.765807 ATCTGGCGGTGGGGAGAG 60.766 66.667 0.00 0.00 0.00 3.20
5702 8290 1.303309 GGGAGAGCGAAATCATGGTG 58.697 55.000 0.00 0.00 0.00 4.17
5711 8299 1.674962 GAAATCATGGTGCCTCTGCTC 59.325 52.381 0.00 0.00 38.71 4.26
5713 8301 2.937379 ATCATGGTGCCTCTGCTCGC 62.937 60.000 0.00 0.00 38.71 5.03
5753 8341 8.838741 AGGTTAGGTTTTTATAATCCACACCTA 58.161 33.333 15.43 8.68 36.73 3.08
5755 8343 8.618677 GTTAGGTTTTTATAATCCACACCTAGC 58.381 37.037 0.00 0.00 36.88 3.42
5756 8344 6.727394 AGGTTTTTATAATCCACACCTAGCA 58.273 36.000 0.00 0.00 31.15 3.49
5766 8354 3.006967 TCCACACCTAGCACTTCTTCTTC 59.993 47.826 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.596801 TGTTTTTGTTTTCTGCATGTGC 57.403 36.364 0.00 0.00 42.50 4.57
42 43 6.302786 GTGTTTGTTTTTGTTTTCTGCATGTG 59.697 34.615 0.00 0.00 0.00 3.21
43 44 6.017605 TGTGTTTGTTTTTGTTTTCTGCATGT 60.018 30.769 0.00 0.00 0.00 3.21
44 45 6.369005 TGTGTTTGTTTTTGTTTTCTGCATG 58.631 32.000 0.00 0.00 0.00 4.06
45 46 6.551385 TGTGTTTGTTTTTGTTTTCTGCAT 57.449 29.167 0.00 0.00 0.00 3.96
46 47 5.991328 TGTGTTTGTTTTTGTTTTCTGCA 57.009 30.435 0.00 0.00 0.00 4.41
47 48 5.794448 CCATGTGTTTGTTTTTGTTTTCTGC 59.206 36.000 0.00 0.00 0.00 4.26
48 49 6.148480 TCCCATGTGTTTGTTTTTGTTTTCTG 59.852 34.615 0.00 0.00 0.00 3.02
49 50 6.234177 TCCCATGTGTTTGTTTTTGTTTTCT 58.766 32.000 0.00 0.00 0.00 2.52
50 51 6.487689 TCCCATGTGTTTGTTTTTGTTTTC 57.512 33.333 0.00 0.00 0.00 2.29
51 52 6.884280 TTCCCATGTGTTTGTTTTTGTTTT 57.116 29.167 0.00 0.00 0.00 2.43
52 53 6.884280 TTTCCCATGTGTTTGTTTTTGTTT 57.116 29.167 0.00 0.00 0.00 2.83
53 54 6.884280 TTTTCCCATGTGTTTGTTTTTGTT 57.116 29.167 0.00 0.00 0.00 2.83
54 55 6.884280 TTTTTCCCATGTGTTTGTTTTTGT 57.116 29.167 0.00 0.00 0.00 2.83
74 75 2.687700 TTGGTGTGTGCATGCTTTTT 57.312 40.000 20.33 0.00 0.00 1.94
75 76 2.687700 TTTGGTGTGTGCATGCTTTT 57.312 40.000 20.33 0.00 0.00 2.27
76 77 2.687700 TTTTGGTGTGTGCATGCTTT 57.312 40.000 20.33 0.00 0.00 3.51
77 78 2.914695 ATTTTGGTGTGTGCATGCTT 57.085 40.000 20.33 0.00 0.00 3.91
78 79 2.102757 TGAATTTTGGTGTGTGCATGCT 59.897 40.909 20.33 0.00 0.00 3.79
79 80 2.477375 CTGAATTTTGGTGTGTGCATGC 59.523 45.455 11.82 11.82 0.00 4.06
80 81 2.477375 GCTGAATTTTGGTGTGTGCATG 59.523 45.455 0.00 0.00 0.00 4.06
81 82 2.548493 GGCTGAATTTTGGTGTGTGCAT 60.548 45.455 0.00 0.00 0.00 3.96
82 83 1.202510 GGCTGAATTTTGGTGTGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
83 84 1.501169 GGCTGAATTTTGGTGTGTGC 58.499 50.000 0.00 0.00 0.00 4.57
84 85 1.411977 TGGGCTGAATTTTGGTGTGTG 59.588 47.619 0.00 0.00 0.00 3.82
85 86 1.786937 TGGGCTGAATTTTGGTGTGT 58.213 45.000 0.00 0.00 0.00 3.72
86 87 2.364970 TCTTGGGCTGAATTTTGGTGTG 59.635 45.455 0.00 0.00 0.00 3.82
87 88 2.629617 CTCTTGGGCTGAATTTTGGTGT 59.370 45.455 0.00 0.00 0.00 4.16
88 89 2.611224 GCTCTTGGGCTGAATTTTGGTG 60.611 50.000 0.00 0.00 0.00 4.17
89 90 1.620323 GCTCTTGGGCTGAATTTTGGT 59.380 47.619 0.00 0.00 0.00 3.67
90 91 1.619827 TGCTCTTGGGCTGAATTTTGG 59.380 47.619 0.00 0.00 0.00 3.28
91 92 3.389925 TTGCTCTTGGGCTGAATTTTG 57.610 42.857 0.00 0.00 0.00 2.44
92 93 4.420522 TTTTGCTCTTGGGCTGAATTTT 57.579 36.364 0.00 0.00 0.00 1.82
93 94 4.572909 GATTTTGCTCTTGGGCTGAATTT 58.427 39.130 0.00 0.00 0.00 1.82
94 95 3.367703 CGATTTTGCTCTTGGGCTGAATT 60.368 43.478 0.00 0.00 0.00 2.17
95 96 2.165030 CGATTTTGCTCTTGGGCTGAAT 59.835 45.455 0.00 0.00 0.00 2.57
96 97 1.541147 CGATTTTGCTCTTGGGCTGAA 59.459 47.619 0.00 0.00 0.00 3.02
97 98 1.167851 CGATTTTGCTCTTGGGCTGA 58.832 50.000 0.00 0.00 0.00 4.26
98 99 1.167851 TCGATTTTGCTCTTGGGCTG 58.832 50.000 0.00 0.00 0.00 4.85
99 100 2.134789 ATCGATTTTGCTCTTGGGCT 57.865 45.000 0.00 0.00 0.00 5.19
100 101 2.164219 TCAATCGATTTTGCTCTTGGGC 59.836 45.455 8.21 0.00 0.00 5.36
101 102 3.728864 CGTCAATCGATTTTGCTCTTGGG 60.729 47.826 8.21 0.00 42.86 4.12
102 103 3.419915 CGTCAATCGATTTTGCTCTTGG 58.580 45.455 8.21 0.00 42.86 3.61
103 104 2.842485 GCGTCAATCGATTTTGCTCTTG 59.158 45.455 8.21 0.00 42.86 3.02
104 105 2.483877 TGCGTCAATCGATTTTGCTCTT 59.516 40.909 20.33 0.00 42.86 2.85
105 106 2.076100 TGCGTCAATCGATTTTGCTCT 58.924 42.857 20.33 0.00 42.86 4.09
106 107 2.525750 TGCGTCAATCGATTTTGCTC 57.474 45.000 20.33 6.88 42.86 4.26
107 108 2.987413 TTGCGTCAATCGATTTTGCT 57.013 40.000 20.33 0.00 42.86 3.91
108 109 4.566659 ATTTTGCGTCAATCGATTTTGC 57.433 36.364 8.21 12.83 42.86 3.68
109 110 5.799936 ACCTATTTTGCGTCAATCGATTTTG 59.200 36.000 8.21 0.00 42.86 2.44
110 111 5.799936 CACCTATTTTGCGTCAATCGATTTT 59.200 36.000 8.21 0.00 42.86 1.82
111 112 5.106317 ACACCTATTTTGCGTCAATCGATTT 60.106 36.000 8.21 0.00 42.86 2.17
112 113 4.394920 ACACCTATTTTGCGTCAATCGATT 59.605 37.500 4.39 4.39 42.86 3.34
113 114 3.938963 ACACCTATTTTGCGTCAATCGAT 59.061 39.130 0.00 0.00 42.86 3.59
114 115 3.331150 ACACCTATTTTGCGTCAATCGA 58.669 40.909 0.00 0.00 42.86 3.59
115 116 3.124466 TGACACCTATTTTGCGTCAATCG 59.876 43.478 0.00 0.00 43.12 3.34
116 117 4.678509 TGACACCTATTTTGCGTCAATC 57.321 40.909 0.00 0.00 33.86 2.67
117 118 5.643379 ATTGACACCTATTTTGCGTCAAT 57.357 34.783 9.61 9.61 46.71 2.57
118 119 4.377943 CGATTGACACCTATTTTGCGTCAA 60.378 41.667 5.81 5.81 46.99 3.18
119 120 3.124466 CGATTGACACCTATTTTGCGTCA 59.876 43.478 0.00 0.00 34.92 4.35
120 121 3.369756 TCGATTGACACCTATTTTGCGTC 59.630 43.478 0.00 0.00 0.00 5.19
121 122 3.331150 TCGATTGACACCTATTTTGCGT 58.669 40.909 0.00 0.00 0.00 5.24
122 123 4.335082 TTCGATTGACACCTATTTTGCG 57.665 40.909 0.00 0.00 0.00 4.85
123 124 5.163663 TGGATTCGATTGACACCTATTTTGC 60.164 40.000 0.00 0.00 0.00 3.68
124 125 6.435430 TGGATTCGATTGACACCTATTTTG 57.565 37.500 0.00 0.00 0.00 2.44
125 126 7.040062 TGTTTGGATTCGATTGACACCTATTTT 60.040 33.333 0.00 0.00 0.00 1.82
126 127 6.432783 TGTTTGGATTCGATTGACACCTATTT 59.567 34.615 0.00 0.00 0.00 1.40
127 128 5.943416 TGTTTGGATTCGATTGACACCTATT 59.057 36.000 0.00 0.00 0.00 1.73
128 129 5.496556 TGTTTGGATTCGATTGACACCTAT 58.503 37.500 0.00 0.00 0.00 2.57
129 130 4.900684 TGTTTGGATTCGATTGACACCTA 58.099 39.130 0.00 0.00 0.00 3.08
130 131 3.750371 TGTTTGGATTCGATTGACACCT 58.250 40.909 0.00 0.00 0.00 4.00
131 132 3.670627 GCTGTTTGGATTCGATTGACACC 60.671 47.826 0.00 0.00 0.00 4.16
132 133 3.492313 GCTGTTTGGATTCGATTGACAC 58.508 45.455 0.00 0.00 0.00 3.67
133 134 2.487762 GGCTGTTTGGATTCGATTGACA 59.512 45.455 0.00 0.00 0.00 3.58
134 135 2.159379 GGGCTGTTTGGATTCGATTGAC 60.159 50.000 0.00 0.00 0.00 3.18
135 136 2.091541 GGGCTGTTTGGATTCGATTGA 58.908 47.619 0.00 0.00 0.00 2.57
136 137 1.818060 TGGGCTGTTTGGATTCGATTG 59.182 47.619 0.00 0.00 0.00 2.67
137 138 2.214376 TGGGCTGTTTGGATTCGATT 57.786 45.000 0.00 0.00 0.00 3.34
138 139 2.214376 TTGGGCTGTTTGGATTCGAT 57.786 45.000 0.00 0.00 0.00 3.59
139 140 2.214376 ATTGGGCTGTTTGGATTCGA 57.786 45.000 0.00 0.00 0.00 3.71
140 141 2.099098 GGTATTGGGCTGTTTGGATTCG 59.901 50.000 0.00 0.00 0.00 3.34
141 142 3.096092 TGGTATTGGGCTGTTTGGATTC 58.904 45.455 0.00 0.00 0.00 2.52
142 143 2.831526 GTGGTATTGGGCTGTTTGGATT 59.168 45.455 0.00 0.00 0.00 3.01
143 144 2.456577 GTGGTATTGGGCTGTTTGGAT 58.543 47.619 0.00 0.00 0.00 3.41
144 145 1.549037 GGTGGTATTGGGCTGTTTGGA 60.549 52.381 0.00 0.00 0.00 3.53
145 146 0.894835 GGTGGTATTGGGCTGTTTGG 59.105 55.000 0.00 0.00 0.00 3.28
146 147 1.545582 CTGGTGGTATTGGGCTGTTTG 59.454 52.381 0.00 0.00 0.00 2.93
147 148 1.923356 CTGGTGGTATTGGGCTGTTT 58.077 50.000 0.00 0.00 0.00 2.83
148 149 0.611896 GCTGGTGGTATTGGGCTGTT 60.612 55.000 0.00 0.00 0.00 3.16
149 150 1.000896 GCTGGTGGTATTGGGCTGT 60.001 57.895 0.00 0.00 0.00 4.40
150 151 0.611618 TTGCTGGTGGTATTGGGCTG 60.612 55.000 0.00 0.00 0.00 4.85
151 152 0.114168 TTTGCTGGTGGTATTGGGCT 59.886 50.000 0.00 0.00 0.00 5.19
152 153 0.972883 TTTTGCTGGTGGTATTGGGC 59.027 50.000 0.00 0.00 0.00 5.36
153 154 1.967066 TGTTTTGCTGGTGGTATTGGG 59.033 47.619 0.00 0.00 0.00 4.12
154 155 3.257873 TCATGTTTTGCTGGTGGTATTGG 59.742 43.478 0.00 0.00 0.00 3.16
155 156 4.236935 GTCATGTTTTGCTGGTGGTATTG 58.763 43.478 0.00 0.00 0.00 1.90
156 157 3.894427 TGTCATGTTTTGCTGGTGGTATT 59.106 39.130 0.00 0.00 0.00 1.89
157 158 3.495331 TGTCATGTTTTGCTGGTGGTAT 58.505 40.909 0.00 0.00 0.00 2.73
158 159 2.884012 CTGTCATGTTTTGCTGGTGGTA 59.116 45.455 0.00 0.00 0.00 3.25
159 160 1.682854 CTGTCATGTTTTGCTGGTGGT 59.317 47.619 0.00 0.00 0.00 4.16
160 161 1.955778 TCTGTCATGTTTTGCTGGTGG 59.044 47.619 0.00 0.00 0.00 4.61
161 162 3.713858 TTCTGTCATGTTTTGCTGGTG 57.286 42.857 0.00 0.00 0.00 4.17
162 163 4.734398 TTTTCTGTCATGTTTTGCTGGT 57.266 36.364 0.00 0.00 0.00 4.00
185 186 9.516314 GTGCTTTAAGATTTGTGTAGTTTTTCT 57.484 29.630 0.00 0.00 0.00 2.52
186 187 9.296400 TGTGCTTTAAGATTTGTGTAGTTTTTC 57.704 29.630 0.00 0.00 0.00 2.29
187 188 9.646427 TTGTGCTTTAAGATTTGTGTAGTTTTT 57.354 25.926 0.00 0.00 0.00 1.94
188 189 9.816354 ATTGTGCTTTAAGATTTGTGTAGTTTT 57.184 25.926 0.00 0.00 0.00 2.43
189 190 9.463443 GATTGTGCTTTAAGATTTGTGTAGTTT 57.537 29.630 0.00 0.00 0.00 2.66
190 191 8.082242 GGATTGTGCTTTAAGATTTGTGTAGTT 58.918 33.333 0.00 0.00 0.00 2.24
191 192 7.230510 TGGATTGTGCTTTAAGATTTGTGTAGT 59.769 33.333 0.00 0.00 0.00 2.73
192 193 7.592938 TGGATTGTGCTTTAAGATTTGTGTAG 58.407 34.615 0.00 0.00 0.00 2.74
193 194 7.517614 TGGATTGTGCTTTAAGATTTGTGTA 57.482 32.000 0.00 0.00 0.00 2.90
194 195 6.403866 TGGATTGTGCTTTAAGATTTGTGT 57.596 33.333 0.00 0.00 0.00 3.72
195 196 6.366877 CCTTGGATTGTGCTTTAAGATTTGTG 59.633 38.462 0.00 0.00 0.00 3.33
196 197 6.458210 CCTTGGATTGTGCTTTAAGATTTGT 58.542 36.000 0.00 0.00 0.00 2.83
197 198 5.870978 CCCTTGGATTGTGCTTTAAGATTTG 59.129 40.000 0.00 0.00 0.00 2.32
198 199 5.569428 GCCCTTGGATTGTGCTTTAAGATTT 60.569 40.000 0.00 0.00 0.00 2.17
199 200 4.081476 GCCCTTGGATTGTGCTTTAAGATT 60.081 41.667 0.00 0.00 0.00 2.40
200 201 3.448660 GCCCTTGGATTGTGCTTTAAGAT 59.551 43.478 0.00 0.00 0.00 2.40
201 202 2.825532 GCCCTTGGATTGTGCTTTAAGA 59.174 45.455 0.00 0.00 0.00 2.10
202 203 2.094026 GGCCCTTGGATTGTGCTTTAAG 60.094 50.000 0.00 0.00 0.00 1.85
203 204 1.899142 GGCCCTTGGATTGTGCTTTAA 59.101 47.619 0.00 0.00 0.00 1.52
204 205 1.203112 TGGCCCTTGGATTGTGCTTTA 60.203 47.619 0.00 0.00 0.00 1.85
205 206 0.471591 TGGCCCTTGGATTGTGCTTT 60.472 50.000 0.00 0.00 0.00 3.51
206 207 0.901580 CTGGCCCTTGGATTGTGCTT 60.902 55.000 0.00 0.00 0.00 3.91
207 208 1.304713 CTGGCCCTTGGATTGTGCT 60.305 57.895 0.00 0.00 0.00 4.40
208 209 0.899717 TTCTGGCCCTTGGATTGTGC 60.900 55.000 0.00 0.00 0.00 4.57
209 210 1.631405 TTTCTGGCCCTTGGATTGTG 58.369 50.000 0.00 0.00 0.00 3.33
210 211 2.397044 TTTTCTGGCCCTTGGATTGT 57.603 45.000 0.00 0.00 0.00 2.71
211 212 2.159198 CGATTTTCTGGCCCTTGGATTG 60.159 50.000 0.00 0.00 0.00 2.67
212 213 2.102578 CGATTTTCTGGCCCTTGGATT 58.897 47.619 0.00 0.00 0.00 3.01
213 214 1.284785 TCGATTTTCTGGCCCTTGGAT 59.715 47.619 0.00 0.00 0.00 3.41
214 215 0.695924 TCGATTTTCTGGCCCTTGGA 59.304 50.000 0.00 0.00 0.00 3.53
215 216 1.767759 ATCGATTTTCTGGCCCTTGG 58.232 50.000 0.00 0.00 0.00 3.61
216 217 2.754552 TCAATCGATTTTCTGGCCCTTG 59.245 45.455 8.21 0.00 0.00 3.61
217 218 2.755103 GTCAATCGATTTTCTGGCCCTT 59.245 45.455 8.21 0.00 0.00 3.95
218 219 2.369394 GTCAATCGATTTTCTGGCCCT 58.631 47.619 8.21 0.00 0.00 5.19
219 220 1.405463 GGTCAATCGATTTTCTGGCCC 59.595 52.381 8.21 0.00 0.00 5.80
220 221 2.091541 TGGTCAATCGATTTTCTGGCC 58.908 47.619 8.21 9.76 34.01 5.36
221 222 2.487762 TGTGGTCAATCGATTTTCTGGC 59.512 45.455 8.21 0.00 0.00 4.85
222 223 4.764679 TTGTGGTCAATCGATTTTCTGG 57.235 40.909 8.21 0.00 0.00 3.86
223 224 5.976534 TGTTTTGTGGTCAATCGATTTTCTG 59.023 36.000 8.21 0.00 33.32 3.02
224 225 6.142818 TGTTTTGTGGTCAATCGATTTTCT 57.857 33.333 8.21 0.00 33.32 2.52
225 226 6.820470 TTGTTTTGTGGTCAATCGATTTTC 57.180 33.333 8.21 4.41 33.32 2.29
226 227 7.602517 TTTTGTTTTGTGGTCAATCGATTTT 57.397 28.000 8.21 0.00 33.32 1.82
227 228 7.602517 TTTTTGTTTTGTGGTCAATCGATTT 57.397 28.000 8.21 0.00 33.32 2.17
228 229 7.784633 ATTTTTGTTTTGTGGTCAATCGATT 57.215 28.000 4.39 4.39 33.32 3.34
229 230 7.493971 TGAATTTTTGTTTTGTGGTCAATCGAT 59.506 29.630 0.00 0.00 33.32 3.59
230 231 6.813649 TGAATTTTTGTTTTGTGGTCAATCGA 59.186 30.769 0.00 0.00 33.32 3.59
231 232 6.998338 TGAATTTTTGTTTTGTGGTCAATCG 58.002 32.000 0.00 0.00 33.32 3.34
232 233 6.906678 GCTGAATTTTTGTTTTGTGGTCAATC 59.093 34.615 0.00 0.00 33.32 2.67
233 234 6.598850 AGCTGAATTTTTGTTTTGTGGTCAAT 59.401 30.769 0.00 0.00 33.32 2.57
234 235 5.936956 AGCTGAATTTTTGTTTTGTGGTCAA 59.063 32.000 0.00 0.00 0.00 3.18
235 236 5.350914 CAGCTGAATTTTTGTTTTGTGGTCA 59.649 36.000 8.42 0.00 0.00 4.02
236 237 5.580297 TCAGCTGAATTTTTGTTTTGTGGTC 59.420 36.000 15.67 0.00 0.00 4.02
237 238 5.351189 GTCAGCTGAATTTTTGTTTTGTGGT 59.649 36.000 20.19 0.00 0.00 4.16
238 239 5.581874 AGTCAGCTGAATTTTTGTTTTGTGG 59.418 36.000 20.19 0.00 0.00 4.17
239 240 6.471839 CAGTCAGCTGAATTTTTGTTTTGTG 58.528 36.000 20.19 0.00 45.28 3.33
240 241 6.651755 CAGTCAGCTGAATTTTTGTTTTGT 57.348 33.333 20.19 0.00 45.28 2.83
253 254 8.239314 CAATTTAGCTAAATTTCAGTCAGCTGA 58.761 33.333 32.33 13.74 43.94 4.26
254 255 7.487189 CCAATTTAGCTAAATTTCAGTCAGCTG 59.513 37.037 32.33 21.02 42.26 4.24
255 256 7.363268 CCCAATTTAGCTAAATTTCAGTCAGCT 60.363 37.037 32.33 14.95 42.26 4.24
256 257 6.753744 CCCAATTTAGCTAAATTTCAGTCAGC 59.246 38.462 32.33 0.00 42.26 4.26
257 258 7.830739 ACCCAATTTAGCTAAATTTCAGTCAG 58.169 34.615 32.33 21.85 42.26 3.51
258 259 7.775053 ACCCAATTTAGCTAAATTTCAGTCA 57.225 32.000 32.33 6.46 42.26 3.41
259 260 9.140286 GAAACCCAATTTAGCTAAATTTCAGTC 57.860 33.333 32.33 23.07 42.26 3.51
260 261 8.870116 AGAAACCCAATTTAGCTAAATTTCAGT 58.130 29.630 32.33 26.27 42.26 3.41
261 262 9.710900 AAGAAACCCAATTTAGCTAAATTTCAG 57.289 29.630 32.33 25.78 42.26 3.02
265 266 9.283768 CCAAAAGAAACCCAATTTAGCTAAATT 57.716 29.630 30.24 30.24 44.27 1.82
266 267 7.882791 CCCAAAAGAAACCCAATTTAGCTAAAT 59.117 33.333 23.22 23.22 37.49 1.40
267 268 7.071321 TCCCAAAAGAAACCCAATTTAGCTAAA 59.929 33.333 20.71 20.71 0.00 1.85
268 269 6.555360 TCCCAAAAGAAACCCAATTTAGCTAA 59.445 34.615 0.86 0.86 0.00 3.09
269 270 6.078664 TCCCAAAAGAAACCCAATTTAGCTA 58.921 36.000 0.00 0.00 0.00 3.32
270 271 4.904853 TCCCAAAAGAAACCCAATTTAGCT 59.095 37.500 0.00 0.00 0.00 3.32
271 272 5.011635 TCTCCCAAAAGAAACCCAATTTAGC 59.988 40.000 0.00 0.00 0.00 3.09
272 273 6.493458 TCTCTCCCAAAAGAAACCCAATTTAG 59.507 38.462 0.00 0.00 0.00 1.85
273 274 6.377912 TCTCTCCCAAAAGAAACCCAATTTA 58.622 36.000 0.00 0.00 0.00 1.40
274 275 5.215845 TCTCTCCCAAAAGAAACCCAATTT 58.784 37.500 0.00 0.00 0.00 1.82
275 276 4.814967 TCTCTCCCAAAAGAAACCCAATT 58.185 39.130 0.00 0.00 0.00 2.32
276 277 4.411013 CTCTCTCCCAAAAGAAACCCAAT 58.589 43.478 0.00 0.00 0.00 3.16
277 278 3.436470 CCTCTCTCCCAAAAGAAACCCAA 60.436 47.826 0.00 0.00 0.00 4.12
278 279 2.108250 CCTCTCTCCCAAAAGAAACCCA 59.892 50.000 0.00 0.00 0.00 4.51
279 280 2.108425 ACCTCTCTCCCAAAAGAAACCC 59.892 50.000 0.00 0.00 0.00 4.11
280 281 3.149981 CACCTCTCTCCCAAAAGAAACC 58.850 50.000 0.00 0.00 0.00 3.27
294 295 5.222631 CAAAACTACAAAATGCCACCTCTC 58.777 41.667 0.00 0.00 0.00 3.20
296 297 3.740832 GCAAAACTACAAAATGCCACCTC 59.259 43.478 0.00 0.00 0.00 3.85
299 300 2.096958 GCGCAAAACTACAAAATGCCAC 60.097 45.455 0.30 0.00 33.55 5.01
388 392 5.937165 TTTCTACGTGTACATTGTATCGC 57.063 39.130 17.70 10.19 0.00 4.58
413 417 4.202010 CCAAGATTCCACGTCAAAAGTGTT 60.202 41.667 0.00 0.00 37.88 3.32
459 463 3.568007 TGTGTTTGTCAATCTTGTAGCCC 59.432 43.478 0.00 0.00 0.00 5.19
497 501 1.420138 ACTTCGCTGGGAGAAAAAGGA 59.580 47.619 0.00 0.00 0.00 3.36
546 553 6.980051 TGAATCCATCATCGATTCATCATC 57.020 37.500 3.72 0.00 46.64 2.92
556 563 6.018180 CCATGCATAGTATGAATCCATCATCG 60.018 42.308 14.52 0.00 45.91 3.84
755 790 0.444651 CAGTCCAGTCGAGTCGAGTC 59.555 60.000 19.86 10.37 37.44 3.36
756 791 0.956410 CCAGTCCAGTCGAGTCGAGT 60.956 60.000 17.12 17.13 40.36 4.18
757 792 1.649390 CCCAGTCCAGTCGAGTCGAG 61.649 65.000 17.12 5.04 36.23 4.04
758 793 1.674651 CCCAGTCCAGTCGAGTCGA 60.675 63.158 12.09 12.09 0.00 4.20
759 794 2.878429 CCCAGTCCAGTCGAGTCG 59.122 66.667 6.09 6.09 0.00 4.18
760 795 1.979693 AGCCCAGTCCAGTCGAGTC 60.980 63.158 0.00 0.00 0.00 3.36
761 796 2.118513 AGCCCAGTCCAGTCGAGT 59.881 61.111 0.00 0.00 0.00 4.18
762 797 2.575993 CAGCCCAGTCCAGTCGAG 59.424 66.667 0.00 0.00 0.00 4.04
763 798 3.695606 GCAGCCCAGTCCAGTCGA 61.696 66.667 0.00 0.00 0.00 4.20
829 868 2.428834 TGCTCCTTTTGGGCAGTTG 58.571 52.632 0.00 0.00 39.62 3.16
845 884 1.120795 ATCTAGAGCAGGGAGGCTGC 61.121 60.000 0.00 0.00 45.99 5.25
846 885 0.968405 GATCTAGAGCAGGGAGGCTG 59.032 60.000 2.36 0.00 45.99 4.85
849 888 0.968405 GCAGATCTAGAGCAGGGAGG 59.032 60.000 11.20 0.00 0.00 4.30
850 889 1.702182 TGCAGATCTAGAGCAGGGAG 58.298 55.000 11.20 0.00 33.75 4.30
851 890 3.933206 TGCAGATCTAGAGCAGGGA 57.067 52.632 11.20 0.00 33.75 4.20
899 961 1.426251 ATTAGGGATGGGATGCCGCA 61.426 55.000 0.00 0.00 46.65 5.69
900 962 0.251341 AATTAGGGATGGGATGCCGC 60.251 55.000 0.00 0.00 46.65 6.53
901 963 2.618045 GGTAATTAGGGATGGGATGCCG 60.618 54.545 0.00 0.00 46.65 5.69
902 964 2.378547 TGGTAATTAGGGATGGGATGCC 59.621 50.000 0.00 0.00 41.75 4.40
917 981 5.829391 AGGTTGGAAAGTTAACGTTGGTAAT 59.171 36.000 11.99 0.00 0.00 1.89
918 982 5.066246 CAGGTTGGAAAGTTAACGTTGGTAA 59.934 40.000 11.99 0.00 0.00 2.85
919 983 4.575645 CAGGTTGGAAAGTTAACGTTGGTA 59.424 41.667 11.99 0.00 0.00 3.25
953 1017 3.128188 CAGCAGCAGCAGCAGAGG 61.128 66.667 12.92 0.00 45.49 3.69
977 1041 2.036256 CCAACCAGGGAAGCCAGG 59.964 66.667 0.00 0.00 0.00 4.45
1359 1432 3.767230 TCGTCGTCGTCGTCGTCC 61.767 66.667 18.44 3.60 45.27 4.79
1809 1882 2.552373 CGGGTTAAAGAAGTCCCAGCTT 60.552 50.000 0.00 0.00 39.87 3.74
1929 2008 0.391130 CCGCGTTCTCCAATTCCAGA 60.391 55.000 4.92 0.00 0.00 3.86
1944 2023 0.737715 CCTCTTCTTCCACTTCCGCG 60.738 60.000 0.00 0.00 0.00 6.46
1948 2027 2.296471 TGACGACCTCTTCTTCCACTTC 59.704 50.000 0.00 0.00 0.00 3.01
1970 2049 2.129555 ATTGGTGCGTGCTTCCTCCT 62.130 55.000 7.78 0.00 0.00 3.69
1971 2050 1.675641 ATTGGTGCGTGCTTCCTCC 60.676 57.895 7.78 0.00 0.00 4.30
1972 2051 1.503542 CATTGGTGCGTGCTTCCTC 59.496 57.895 7.78 0.00 0.00 3.71
1985 2067 1.172180 ACTGTCGTGGTTGCCATTGG 61.172 55.000 0.00 0.00 35.28 3.16
2068 2150 2.178521 CGACGACTTGGACTCCCG 59.821 66.667 0.00 0.00 34.29 5.14
2173 2258 2.609459 CCTCAATGTCATCGTTGTAGGC 59.391 50.000 0.00 0.00 40.34 3.93
2187 2272 1.746615 CTCCCGTGCCACCTCAATG 60.747 63.158 0.00 0.00 0.00 2.82
2353 2438 3.251729 CCTATTTTCATCAGATGGCCACG 59.748 47.826 8.16 0.00 0.00 4.94
2354 2439 4.464008 TCCTATTTTCATCAGATGGCCAC 58.536 43.478 8.16 1.58 0.00 5.01
2618 2707 5.826586 TCACGCACATAAAGACAAAATTGT 58.173 33.333 0.00 0.00 45.65 2.71
2724 2882 9.646522 AGCATAAAACTCCCAATTGTCTATAAT 57.353 29.630 4.43 0.00 0.00 1.28
2747 2905 8.752005 AAGCTAAAATGGAGTTATTCATAGCA 57.248 30.769 13.72 0.00 37.58 3.49
2800 2958 5.645624 TCGTTGAAACAGAAAAATGAGCAA 58.354 33.333 0.00 0.00 0.00 3.91
2840 2998 7.680730 TCACTAGCTTCAGAAGGAGTAAAAAT 58.319 34.615 12.30 0.00 0.00 1.82
2867 3035 3.070734 AGGCAGCTATCTGAATGGTACTG 59.929 47.826 0.00 0.00 42.95 2.74
3114 3623 1.134551 GCACCCTCATCTTCTCCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
3115 3624 1.198713 GCACCCTCATCTTCTCCTCA 58.801 55.000 0.00 0.00 0.00 3.86
3166 3675 3.181467 CCTCAGCACCTCTCTCATAAAGG 60.181 52.174 0.00 0.00 36.21 3.11
3307 3816 1.284297 GCTCATTTGTTTGCGGCCAC 61.284 55.000 2.24 0.00 0.00 5.01
3345 3859 8.451687 TTGTTATTTTCGAAAAGAGATGCATG 57.548 30.769 25.87 0.00 0.00 4.06
3512 4027 4.039124 GTGGATGCCCGGAATGAAAAATAT 59.961 41.667 0.73 0.00 34.29 1.28
3577 4092 4.041567 TGAAGCCACAGAACCAGAAAGATA 59.958 41.667 0.00 0.00 0.00 1.98
3641 4156 0.237498 GAGTAACAAACTGCGGTGCC 59.763 55.000 0.00 0.00 39.07 5.01
3659 4174 7.039504 ACGCTCTTATATTAATTTACGGAGGGA 60.040 37.037 22.59 0.00 35.94 4.20
3660 4175 7.095270 ACGCTCTTATATTAATTTACGGAGGG 58.905 38.462 18.58 18.58 37.30 4.30
3661 4176 8.530269 AACGCTCTTATATTAATTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
3713 4228 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3715 4230 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3723 4238 9.544579 ACTTTACTACTCCCTCTGTAAACTAAT 57.455 33.333 0.00 0.00 33.24 1.73
3724 4239 8.946797 ACTTTACTACTCCCTCTGTAAACTAA 57.053 34.615 0.00 0.00 33.24 2.24
3725 4240 8.946797 AACTTTACTACTCCCTCTGTAAACTA 57.053 34.615 0.00 0.00 33.24 2.24
3726 4241 7.852550 AACTTTACTACTCCCTCTGTAAACT 57.147 36.000 0.00 0.00 33.24 2.66
3727 4242 8.771766 CAAAACTTTACTACTCCCTCTGTAAAC 58.228 37.037 0.00 0.00 33.24 2.01
3728 4243 7.935210 CCAAAACTTTACTACTCCCTCTGTAAA 59.065 37.037 0.00 0.00 34.84 2.01
3729 4244 7.447594 CCAAAACTTTACTACTCCCTCTGTAA 58.552 38.462 0.00 0.00 0.00 2.41
3730 4245 6.013984 CCCAAAACTTTACTACTCCCTCTGTA 60.014 42.308 0.00 0.00 0.00 2.74
3731 4246 5.221864 CCCAAAACTTTACTACTCCCTCTGT 60.222 44.000 0.00 0.00 0.00 3.41
3732 4247 5.012768 TCCCAAAACTTTACTACTCCCTCTG 59.987 44.000 0.00 0.00 0.00 3.35
3733 4248 5.160386 TCCCAAAACTTTACTACTCCCTCT 58.840 41.667 0.00 0.00 0.00 3.69
3734 4249 5.494390 TCCCAAAACTTTACTACTCCCTC 57.506 43.478 0.00 0.00 0.00 4.30
3735 4250 5.917545 TTCCCAAAACTTTACTACTCCCT 57.082 39.130 0.00 0.00 0.00 4.20
3736 4251 5.651139 GGATTCCCAAAACTTTACTACTCCC 59.349 44.000 0.00 0.00 0.00 4.30
3737 4252 6.374613 CAGGATTCCCAAAACTTTACTACTCC 59.625 42.308 0.00 0.00 33.88 3.85
3738 4253 6.374613 CCAGGATTCCCAAAACTTTACTACTC 59.625 42.308 0.00 0.00 33.88 2.59
3739 4254 6.183361 ACCAGGATTCCCAAAACTTTACTACT 60.183 38.462 0.00 0.00 33.88 2.57
3742 4257 5.074746 ACCAGGATTCCCAAAACTTTACT 57.925 39.130 0.00 0.00 33.88 2.24
3748 4263 4.587262 ACAACTTACCAGGATTCCCAAAAC 59.413 41.667 0.00 0.00 33.88 2.43
3756 4271 3.118371 GGATCCGACAACTTACCAGGATT 60.118 47.826 0.00 0.00 38.47 3.01
3773 4288 6.016443 GGTCTTGAAATCATCTCATTGGATCC 60.016 42.308 4.20 4.20 0.00 3.36
3877 4397 6.398095 TCCACATATACACTTCAACAGACAG 58.602 40.000 0.00 0.00 0.00 3.51
3878 4398 6.353404 TCCACATATACACTTCAACAGACA 57.647 37.500 0.00 0.00 0.00 3.41
3879 4399 7.334421 ACAATCCACATATACACTTCAACAGAC 59.666 37.037 0.00 0.00 0.00 3.51
3880 4400 7.394016 ACAATCCACATATACACTTCAACAGA 58.606 34.615 0.00 0.00 0.00 3.41
3881 4401 7.550551 AGACAATCCACATATACACTTCAACAG 59.449 37.037 0.00 0.00 0.00 3.16
3882 4402 7.394016 AGACAATCCACATATACACTTCAACA 58.606 34.615 0.00 0.00 0.00 3.33
3883 4403 7.849804 AGACAATCCACATATACACTTCAAC 57.150 36.000 0.00 0.00 0.00 3.18
3884 4404 7.710907 GCTAGACAATCCACATATACACTTCAA 59.289 37.037 0.00 0.00 0.00 2.69
3885 4405 7.210174 GCTAGACAATCCACATATACACTTCA 58.790 38.462 0.00 0.00 0.00 3.02
3886 4406 6.647067 GGCTAGACAATCCACATATACACTTC 59.353 42.308 0.00 0.00 0.00 3.01
3887 4407 6.464465 GGGCTAGACAATCCACATATACACTT 60.464 42.308 0.00 0.00 0.00 3.16
3888 4408 5.012148 GGGCTAGACAATCCACATATACACT 59.988 44.000 0.00 0.00 0.00 3.55
3889 4409 5.012148 AGGGCTAGACAATCCACATATACAC 59.988 44.000 0.00 0.00 0.00 2.90
3890 4410 5.155161 AGGGCTAGACAATCCACATATACA 58.845 41.667 0.00 0.00 0.00 2.29
3891 4411 5.746990 AGGGCTAGACAATCCACATATAC 57.253 43.478 0.00 0.00 0.00 1.47
3892 4412 6.239887 GGAAAGGGCTAGACAATCCACATATA 60.240 42.308 0.00 0.00 0.00 0.86
3893 4413 5.456763 GGAAAGGGCTAGACAATCCACATAT 60.457 44.000 0.00 0.00 0.00 1.78
3894 4414 4.141482 GGAAAGGGCTAGACAATCCACATA 60.141 45.833 0.00 0.00 0.00 2.29
3895 4415 3.372025 GGAAAGGGCTAGACAATCCACAT 60.372 47.826 0.00 0.00 0.00 3.21
3896 4416 2.026262 GGAAAGGGCTAGACAATCCACA 60.026 50.000 0.00 0.00 0.00 4.17
3897 4417 2.026262 TGGAAAGGGCTAGACAATCCAC 60.026 50.000 11.14 0.00 30.90 4.02
3898 4418 2.274542 TGGAAAGGGCTAGACAATCCA 58.725 47.619 11.14 11.14 33.32 3.41
3899 4419 3.117888 TGATGGAAAGGGCTAGACAATCC 60.118 47.826 0.00 1.95 0.00 3.01
3900 4420 4.156455 TGATGGAAAGGGCTAGACAATC 57.844 45.455 0.00 0.00 0.00 2.67
3901 4421 4.803329 ATGATGGAAAGGGCTAGACAAT 57.197 40.909 0.00 0.00 0.00 2.71
3902 4422 4.591321 AATGATGGAAAGGGCTAGACAA 57.409 40.909 0.00 0.00 0.00 3.18
3903 4423 4.526970 GAAATGATGGAAAGGGCTAGACA 58.473 43.478 0.00 0.00 0.00 3.41
3904 4424 3.561725 CGAAATGATGGAAAGGGCTAGAC 59.438 47.826 0.00 0.00 0.00 2.59
3905 4425 3.433598 CCGAAATGATGGAAAGGGCTAGA 60.434 47.826 0.00 0.00 0.00 2.43
3906 4426 2.880890 CCGAAATGATGGAAAGGGCTAG 59.119 50.000 0.00 0.00 0.00 3.42
3907 4427 2.507886 TCCGAAATGATGGAAAGGGCTA 59.492 45.455 0.00 0.00 0.00 3.93
3908 4428 1.284785 TCCGAAATGATGGAAAGGGCT 59.715 47.619 0.00 0.00 0.00 5.19
3909 4429 1.405463 GTCCGAAATGATGGAAAGGGC 59.595 52.381 0.00 0.00 35.67 5.19
3910 4430 3.004752 AGTCCGAAATGATGGAAAGGG 57.995 47.619 0.00 0.00 35.67 3.95
3911 4431 5.391312 AAAAGTCCGAAATGATGGAAAGG 57.609 39.130 0.00 0.00 35.67 3.11
3912 4432 7.145932 ACTAAAAGTCCGAAATGATGGAAAG 57.854 36.000 0.00 0.00 35.67 2.62
3913 4433 7.367285 CAACTAAAAGTCCGAAATGATGGAAA 58.633 34.615 0.00 0.00 35.67 3.13
3914 4434 6.569610 GCAACTAAAAGTCCGAAATGATGGAA 60.570 38.462 0.00 0.00 35.67 3.53
3915 4435 5.106317 GCAACTAAAAGTCCGAAATGATGGA 60.106 40.000 0.00 0.00 0.00 3.41
3916 4436 5.095490 GCAACTAAAAGTCCGAAATGATGG 58.905 41.667 0.00 0.00 0.00 3.51
3917 4437 4.788100 CGCAACTAAAAGTCCGAAATGATG 59.212 41.667 0.00 0.00 0.00 3.07
3918 4438 4.454504 ACGCAACTAAAAGTCCGAAATGAT 59.545 37.500 6.96 0.00 0.00 2.45
3919 4439 3.810941 ACGCAACTAAAAGTCCGAAATGA 59.189 39.130 6.96 0.00 0.00 2.57
3920 4440 4.141855 ACGCAACTAAAAGTCCGAAATG 57.858 40.909 6.96 0.00 0.00 2.32
3921 4441 4.533222 CAACGCAACTAAAAGTCCGAAAT 58.467 39.130 6.96 0.00 0.00 2.17
3922 4442 3.242804 CCAACGCAACTAAAAGTCCGAAA 60.243 43.478 6.96 0.00 0.00 3.46
3923 4443 2.288458 CCAACGCAACTAAAAGTCCGAA 59.712 45.455 6.96 0.00 0.00 4.30
3924 4444 1.868498 CCAACGCAACTAAAAGTCCGA 59.132 47.619 6.96 0.00 0.00 4.55
3925 4445 1.662026 GCCAACGCAACTAAAAGTCCG 60.662 52.381 0.00 0.00 34.03 4.79
3926 4446 1.607148 AGCCAACGCAACTAAAAGTCC 59.393 47.619 0.00 0.00 37.52 3.85
3927 4447 3.497262 ACTAGCCAACGCAACTAAAAGTC 59.503 43.478 0.00 0.00 37.52 3.01
3928 4448 3.250040 CACTAGCCAACGCAACTAAAAGT 59.750 43.478 0.00 0.00 37.52 2.66
3929 4449 3.810373 CACTAGCCAACGCAACTAAAAG 58.190 45.455 0.00 0.00 37.52 2.27
3930 4450 2.031508 GCACTAGCCAACGCAACTAAAA 60.032 45.455 0.00 0.00 37.52 1.52
3931 4451 1.533731 GCACTAGCCAACGCAACTAAA 59.466 47.619 0.00 0.00 37.52 1.85
3932 4452 1.153353 GCACTAGCCAACGCAACTAA 58.847 50.000 0.00 0.00 37.52 2.24
3933 4453 0.034198 TGCACTAGCCAACGCAACTA 59.966 50.000 0.00 0.00 41.13 2.24
3934 4454 0.606401 ATGCACTAGCCAACGCAACT 60.606 50.000 0.00 0.00 41.13 3.16
3935 4455 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
3936 4456 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
3937 4457 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
3938 4458 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
3939 4459 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
3940 4460 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
3941 4461 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
3942 4462 3.009723 GTTAAGCTTCATGCACTAGCCA 58.990 45.455 0.00 0.00 45.94 4.75
3943 4463 3.009723 TGTTAAGCTTCATGCACTAGCC 58.990 45.455 0.00 0.11 45.94 3.93
3944 4464 3.686726 AGTGTTAAGCTTCATGCACTAGC 59.313 43.478 17.63 8.13 45.94 3.42
3945 4465 4.692625 ACAGTGTTAAGCTTCATGCACTAG 59.307 41.667 18.27 15.57 45.94 2.57
3946 4466 4.641396 ACAGTGTTAAGCTTCATGCACTA 58.359 39.130 18.27 0.00 45.94 2.74
3947 4467 3.480470 ACAGTGTTAAGCTTCATGCACT 58.520 40.909 0.00 10.47 45.94 4.40
3948 4468 3.250762 TGACAGTGTTAAGCTTCATGCAC 59.749 43.478 0.00 8.27 45.94 4.57
3949 4469 3.475575 TGACAGTGTTAAGCTTCATGCA 58.524 40.909 0.00 0.00 45.94 3.96
3950 4470 4.409570 CATGACAGTGTTAAGCTTCATGC 58.590 43.478 0.00 0.00 43.29 4.06
3951 4471 4.083164 TGCATGACAGTGTTAAGCTTCATG 60.083 41.667 15.10 9.32 42.08 3.07
3952 4472 4.074259 TGCATGACAGTGTTAAGCTTCAT 58.926 39.130 15.10 0.00 0.00 2.57
3953 4473 3.475575 TGCATGACAGTGTTAAGCTTCA 58.524 40.909 15.10 0.00 0.00 3.02
3954 4474 4.394300 AGATGCATGACAGTGTTAAGCTTC 59.606 41.667 17.80 17.80 0.00 3.86
3955 4475 4.330250 AGATGCATGACAGTGTTAAGCTT 58.670 39.130 15.10 3.48 0.00 3.74
3956 4476 3.937706 GAGATGCATGACAGTGTTAAGCT 59.062 43.478 15.10 2.67 0.00 3.74
3957 4477 3.937706 AGAGATGCATGACAGTGTTAAGC 59.062 43.478 2.46 8.19 0.00 3.09
3958 4478 6.760298 ACATAGAGATGCATGACAGTGTTAAG 59.240 38.462 2.46 0.00 36.43 1.85
3959 4479 6.643388 ACATAGAGATGCATGACAGTGTTAA 58.357 36.000 2.46 0.00 36.43 2.01
3960 4480 6.225981 ACATAGAGATGCATGACAGTGTTA 57.774 37.500 2.46 0.00 36.43 2.41
3961 4481 5.095145 ACATAGAGATGCATGACAGTGTT 57.905 39.130 2.46 0.00 36.43 3.32
3962 4482 4.750021 ACATAGAGATGCATGACAGTGT 57.250 40.909 2.46 0.00 36.43 3.55
3963 4483 4.272748 CCAACATAGAGATGCATGACAGTG 59.727 45.833 2.46 0.00 36.43 3.66
3964 4484 4.449131 CCAACATAGAGATGCATGACAGT 58.551 43.478 2.46 0.00 36.43 3.55
4003 4523 5.868043 CATGAGAGTTAACATGCAGACAA 57.132 39.130 8.61 0.00 37.62 3.18
4022 4543 3.591023 TGCATCAACCTGAAAATGCATG 58.409 40.909 0.00 0.00 46.91 4.06
4116 4637 2.225791 ATCTTGCAGCTGCGACGGTA 62.226 55.000 32.11 12.29 45.83 4.02
4156 4677 2.706339 AGCTCCAGGTGCTTGATTAG 57.294 50.000 10.43 0.00 37.52 1.73
4417 4938 1.228552 GCAGAACCTGGGAGGCAAA 60.229 57.895 0.00 0.00 39.63 3.68
4452 4973 0.827368 CCTGCCTCCACTCTAACCTC 59.173 60.000 0.00 0.00 0.00 3.85
4456 4977 0.621571 ATGCCCTGCCTCCACTCTAA 60.622 55.000 0.00 0.00 0.00 2.10
4619 5140 2.040464 AGGGCGGATCACCATCCT 60.040 61.111 6.37 0.00 46.20 3.24
4827 5360 0.251297 TGCTCATCCAAACCACAGGG 60.251 55.000 0.00 0.00 41.29 4.45
4828 5361 1.171308 CTGCTCATCCAAACCACAGG 58.829 55.000 0.00 0.00 0.00 4.00
4829 5362 0.524862 GCTGCTCATCCAAACCACAG 59.475 55.000 0.00 0.00 0.00 3.66
4830 5363 0.178995 TGCTGCTCATCCAAACCACA 60.179 50.000 0.00 0.00 0.00 4.17
4831 5364 0.961019 TTGCTGCTCATCCAAACCAC 59.039 50.000 0.00 0.00 0.00 4.16
4914 5447 0.178068 AAATCCCAGTGACGATCCCG 59.822 55.000 0.00 0.00 42.50 5.14
4930 5463 3.428045 GCTTTCACATCGGCTGCTTAAAT 60.428 43.478 0.00 0.00 0.00 1.40
5058 5747 1.749334 ATCTTCCTCCGGTCGGCATC 61.749 60.000 0.00 0.00 34.68 3.91
5065 5754 1.657804 AAGAACCATCTTCCTCCGGT 58.342 50.000 0.00 0.00 42.26 5.28
5071 5760 6.231211 TCACTTGTCTAAAGAACCATCTTCC 58.769 40.000 0.00 0.00 45.19 3.46
5074 5763 6.656693 CCATTCACTTGTCTAAAGAACCATCT 59.343 38.462 0.00 0.00 37.57 2.90
5075 5764 6.431234 ACCATTCACTTGTCTAAAGAACCATC 59.569 38.462 0.00 0.00 0.00 3.51
5076 5765 6.306987 ACCATTCACTTGTCTAAAGAACCAT 58.693 36.000 0.00 0.00 0.00 3.55
5077 5766 5.690865 ACCATTCACTTGTCTAAAGAACCA 58.309 37.500 0.00 0.00 0.00 3.67
5078 5767 5.763204 TGACCATTCACTTGTCTAAAGAACC 59.237 40.000 0.00 0.00 0.00 3.62
5099 5788 2.162754 CGGCGATAACACCGGTGAC 61.163 63.158 40.21 24.09 45.74 3.67
5100 5789 2.182284 CGGCGATAACACCGGTGA 59.818 61.111 40.21 20.46 45.74 4.02
5106 5795 2.613691 TCTTCTTTCCGGCGATAACAC 58.386 47.619 9.30 0.00 0.00 3.32
5107 5796 3.322211 TTCTTCTTTCCGGCGATAACA 57.678 42.857 9.30 0.00 0.00 2.41
5236 5934 3.752222 GGATCATGCATTGGCTAGAGAAG 59.248 47.826 0.00 0.00 41.91 2.85
5272 5970 1.542915 CAGAGCCCCACAATGAACAAG 59.457 52.381 0.00 0.00 0.00 3.16
5286 5984 0.801251 CACAAAGCTGTAGCAGAGCC 59.199 55.000 6.65 0.00 45.16 4.70
5361 6059 4.036734 GTGGTTGAAAAATCAGAGTCTGCA 59.963 41.667 15.72 3.57 0.00 4.41
5380 6078 5.514274 AAAATGTGAATTTCGACAGTGGT 57.486 34.783 0.00 0.00 0.00 4.16
5499 6357 2.478894 CAGTAACGCGGTGACAAAGATT 59.521 45.455 7.07 0.00 0.00 2.40
5501 6359 1.202440 ACAGTAACGCGGTGACAAAGA 60.202 47.619 7.07 0.00 0.00 2.52
5559 8147 3.495753 GGAAAGGAAATGTTTTGCTGCAG 59.504 43.478 10.11 10.11 0.00 4.41
5588 8176 2.186160 TTTGCCATAGCCGCCGATG 61.186 57.895 0.00 0.00 38.69 3.84
5589 8177 2.186826 GTTTGCCATAGCCGCCGAT 61.187 57.895 0.00 0.00 38.69 4.18
5590 8178 2.822255 GTTTGCCATAGCCGCCGA 60.822 61.111 0.00 0.00 38.69 5.54
5591 8179 3.130819 TGTTTGCCATAGCCGCCG 61.131 61.111 0.00 0.00 38.69 6.46
5592 8180 1.666209 ATGTGTTTGCCATAGCCGCC 61.666 55.000 0.00 0.00 38.69 6.13
5593 8181 0.248621 GATGTGTTTGCCATAGCCGC 60.249 55.000 0.00 0.00 38.69 6.53
5609 8197 1.895131 CAACAAACCTTGGAGGGGATG 59.105 52.381 0.00 0.00 40.58 3.51
5627 8215 1.377202 GAATCCACAGGCTCGCCAA 60.377 57.895 11.02 0.00 38.92 4.52
5639 8227 1.549950 GGCAAAGGGGAAGTGAATCCA 60.550 52.381 0.00 0.00 41.55 3.41
5640 8228 1.186200 GGCAAAGGGGAAGTGAATCC 58.814 55.000 0.00 0.00 38.86 3.01
5678 8266 1.521681 GATTTCGCTCTCCCCACCG 60.522 63.158 0.00 0.00 0.00 4.94
5681 8269 0.181114 CCATGATTTCGCTCTCCCCA 59.819 55.000 0.00 0.00 0.00 4.96
5688 8276 0.254178 AGAGGCACCATGATTTCGCT 59.746 50.000 0.00 0.00 0.00 4.93
5689 8277 0.379669 CAGAGGCACCATGATTTCGC 59.620 55.000 0.00 0.00 0.00 4.70
5690 8278 0.379669 GCAGAGGCACCATGATTTCG 59.620 55.000 0.00 0.00 40.72 3.46
5691 8279 1.674962 GAGCAGAGGCACCATGATTTC 59.325 52.381 0.00 0.00 44.61 2.17
5692 8280 1.760192 GAGCAGAGGCACCATGATTT 58.240 50.000 0.00 0.00 44.61 2.17
5702 8290 3.842923 TAGGCTGCGAGCAGAGGC 61.843 66.667 27.09 14.93 44.75 4.70
5711 8299 3.521947 AACCTAAACTAGTAGGCTGCG 57.478 47.619 11.07 0.00 44.05 5.18
5713 8301 6.541934 AACCTAACCTAAACTAGTAGGCTG 57.458 41.667 11.07 2.89 44.05 4.85
5753 8341 3.798202 ACAAACTCGAAGAAGAAGTGCT 58.202 40.909 0.00 0.00 34.09 4.40
5755 8343 5.050702 GGAAGACAAACTCGAAGAAGAAGTG 60.051 44.000 0.00 0.00 34.09 3.16
5756 8344 5.051153 GGAAGACAAACTCGAAGAAGAAGT 58.949 41.667 0.00 0.00 34.09 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.