Multiple sequence alignment - TraesCS7D01G273000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G273000 chr7D 100.000 9469 0 0 1 9469 263531978 263522510 0.000000e+00 17487.0
1 TraesCS7D01G273000 chr7D 88.244 689 70 7 5551 6238 55614680 55614002 0.000000e+00 813.0
2 TraesCS7D01G273000 chr7D 91.509 106 9 0 6843 6948 263525032 263524927 7.660000e-31 147.0
3 TraesCS7D01G273000 chr7D 91.509 106 9 0 6947 7052 263525136 263525031 7.660000e-31 147.0
4 TraesCS7D01G273000 chr7D 84.211 95 14 1 371 464 15075933 15075839 3.640000e-14 91.6
5 TraesCS7D01G273000 chr7D 87.755 49 3 3 7724 7770 550241470 550241517 5.000000e-03 54.7
6 TraesCS7D01G273000 chr7A 94.430 2729 102 11 554 3256 286538291 286535587 0.000000e+00 4152.0
7 TraesCS7D01G273000 chr7A 95.904 1831 38 6 6237 8063 286532195 286530398 0.000000e+00 2931.0
8 TraesCS7D01G273000 chr7A 94.879 1035 50 3 3253 4286 286533433 286532401 0.000000e+00 1615.0
9 TraesCS7D01G273000 chr7A 90.071 1269 69 10 8063 9320 286530351 286529129 0.000000e+00 1592.0
10 TraesCS7D01G273000 chr7A 83.507 958 118 17 5286 6232 68020809 68021737 0.000000e+00 857.0
11 TraesCS7D01G273000 chr7A 84.635 794 112 9 5448 6238 183828855 183829641 0.000000e+00 782.0
12 TraesCS7D01G273000 chr7A 97.990 199 2 1 4356 4552 211400775 211400577 2.530000e-90 344.0
13 TraesCS7D01G273000 chr7A 95.294 170 7 1 4552 4720 286532350 286532181 1.570000e-67 268.0
14 TraesCS7D01G273000 chr7A 75.166 451 76 27 31 464 206587144 206586713 7.550000e-41 180.0
15 TraesCS7D01G273000 chr7A 92.105 114 9 0 9356 9469 286529059 286528946 2.740000e-35 161.0
16 TraesCS7D01G273000 chr7A 91.509 106 9 0 6947 7052 286531587 286531482 7.660000e-31 147.0
17 TraesCS7D01G273000 chr7A 81.281 203 17 14 4729 4928 68020581 68020765 2.760000e-30 145.0
18 TraesCS7D01G273000 chr7A 77.215 237 42 10 372 604 426558844 426559072 2.780000e-25 128.0
19 TraesCS7D01G273000 chr7A 93.939 66 4 0 6883 6948 286531469 286531404 6.050000e-17 100.0
20 TraesCS7D01G273000 chr7B 90.982 1741 102 29 6240 7938 243271843 243270116 0.000000e+00 2294.0
21 TraesCS7D01G273000 chr7B 95.527 1185 33 5 816 1998 243276966 243275800 0.000000e+00 1877.0
22 TraesCS7D01G273000 chr7B 88.918 1516 142 15 2000 3504 243274481 243272981 0.000000e+00 1845.0
23 TraesCS7D01G273000 chr7B 93.170 981 43 12 8094 9067 243269673 243268710 0.000000e+00 1419.0
24 TraesCS7D01G273000 chr7B 88.836 1057 91 15 4764 5808 703941092 703942133 0.000000e+00 1273.0
25 TraesCS7D01G273000 chr7B 90.535 803 67 5 3558 4354 243272988 243272189 0.000000e+00 1053.0
26 TraesCS7D01G273000 chr7B 93.812 404 17 6 9067 9469 243267856 243267460 1.360000e-167 601.0
27 TraesCS7D01G273000 chr7B 96.774 93 1 2 7975 8066 243270110 243270019 4.580000e-33 154.0
28 TraesCS7D01G273000 chr7B 92.453 106 7 1 6948 7052 243271220 243271115 5.920000e-32 150.0
29 TraesCS7D01G273000 chr7B 82.065 184 23 9 9125 9302 53172214 53172035 2.130000e-31 148.0
30 TraesCS7D01G273000 chr7B 89.623 106 11 0 6843 6948 243271116 243271011 1.660000e-27 135.0
31 TraesCS7D01G273000 chr7B 91.667 48 4 0 3432 3479 243273098 243273051 6.140000e-07 67.6
32 TraesCS7D01G273000 chr7B 100.000 28 0 0 8063 8090 243269976 243269949 1.700000e-02 52.8
33 TraesCS7D01G273000 chr4A 88.100 1437 128 22 4732 6161 615042781 615044181 0.000000e+00 1666.0
34 TraesCS7D01G273000 chr4A 73.489 513 85 39 48 544 552414560 552414083 7.660000e-31 147.0
35 TraesCS7D01G273000 chr3D 93.655 788 48 2 5402 6189 54624358 54625143 0.000000e+00 1177.0
36 TraesCS7D01G273000 chr3D 90.203 296 24 4 5111 5406 54499700 54499990 1.930000e-101 381.0
37 TraesCS7D01G273000 chr3D 87.066 317 38 3 4800 5115 54486682 54486996 1.170000e-93 355.0
38 TraesCS7D01G273000 chr3D 74.832 596 95 41 32 604 30289087 30289650 1.600000e-52 219.0
39 TraesCS7D01G273000 chr1B 88.960 942 90 8 5307 6241 32077126 32076192 0.000000e+00 1151.0
40 TraesCS7D01G273000 chr1B 81.530 1229 179 29 4826 6038 32202405 32201209 0.000000e+00 968.0
41 TraesCS7D01G273000 chr1B 77.171 403 53 22 4729 5125 6522119 6522488 2.090000e-46 198.0
42 TraesCS7D01G273000 chr3A 86.692 1037 103 18 5024 6038 503854829 503853806 0.000000e+00 1118.0
43 TraesCS7D01G273000 chr3A 85.333 75 8 3 7726 7800 333307325 333307254 3.670000e-09 75.0
44 TraesCS7D01G273000 chr3A 90.000 50 5 0 8690 8739 704459341 704459390 2.210000e-06 65.8
45 TraesCS7D01G273000 chr6A 88.517 836 90 3 5405 6240 123260616 123261445 0.000000e+00 1007.0
46 TraesCS7D01G273000 chr6A 86.029 272 29 6 9044 9310 542701121 542700854 5.600000e-72 283.0
47 TraesCS7D01G273000 chr6A 81.915 94 13 3 372 462 25016182 25016274 1.020000e-09 76.8
48 TraesCS7D01G273000 chr6A 82.716 81 7 6 7722 7796 301951367 301951288 2.210000e-06 65.8
49 TraesCS7D01G273000 chr2D 90.755 649 58 2 5591 6239 38203874 38203228 0.000000e+00 865.0
50 TraesCS7D01G273000 chr2D 83.077 130 16 5 357 486 136988097 136987974 7.770000e-21 113.0
51 TraesCS7D01G273000 chrUn 87.518 689 75 7 5551 6238 48619993 48620671 0.000000e+00 785.0
52 TraesCS7D01G273000 chrUn 97.990 199 2 1 4356 4552 186180603 186180405 2.530000e-90 344.0
53 TraesCS7D01G273000 chrUn 97.990 199 2 1 4356 4552 270841188 270840990 2.530000e-90 344.0
54 TraesCS7D01G273000 chrUn 97.990 199 2 1 4356 4552 444436528 444436726 2.530000e-90 344.0
55 TraesCS7D01G273000 chrUn 97.487 199 3 1 4356 4552 339228447 339228645 1.180000e-88 339.0
56 TraesCS7D01G273000 chrUn 76.977 430 76 17 4798 5208 48618973 48619398 3.440000e-54 224.0
57 TraesCS7D01G273000 chr6D 88.021 384 27 8 8940 9311 433733256 433732880 4.060000e-118 436.0
58 TraesCS7D01G273000 chr4D 86.047 387 32 11 8940 9311 4050259 4050638 6.890000e-106 396.0
59 TraesCS7D01G273000 chr4D 79.325 237 32 14 65 292 55713918 55714146 5.920000e-32 150.0
60 TraesCS7D01G273000 chr4D 85.586 111 11 3 8767 8877 4050124 4050229 2.800000e-20 111.0
61 TraesCS7D01G273000 chr4D 95.000 40 2 0 7723 7762 499285732 499285771 7.940000e-06 63.9
62 TraesCS7D01G273000 chr3B 84.225 374 41 9 8949 9311 616085307 616085673 1.960000e-91 348.0
63 TraesCS7D01G273000 chr3B 85.185 270 33 5 9044 9309 222195551 222195285 4.360000e-68 270.0
64 TraesCS7D01G273000 chr3B 77.652 264 43 13 32 284 52737541 52737283 7.660000e-31 147.0
65 TraesCS7D01G273000 chr3B 84.404 109 13 4 356 462 167253870 167253976 4.680000e-18 104.0
66 TraesCS7D01G273000 chr2A 97.990 199 2 1 4356 4552 605925321 605925519 2.530000e-90 344.0
67 TraesCS7D01G273000 chr2A 97.990 199 2 1 4356 4552 714310661 714310463 2.530000e-90 344.0
68 TraesCS7D01G273000 chr2A 73.514 589 107 38 3 574 10737985 10738541 2.720000e-40 178.0
69 TraesCS7D01G273000 chr2A 77.778 297 45 18 13 292 683579837 683579545 7.610000e-36 163.0
70 TraesCS7D01G273000 chr1A 97.990 199 2 1 4356 4552 111994101 111993903 2.530000e-90 344.0
71 TraesCS7D01G273000 chr1A 82.895 76 7 5 7726 7795 91500340 91500265 7.940000e-06 63.9
72 TraesCS7D01G273000 chr4B 97.487 199 3 1 4356 4552 209260506 209260308 1.180000e-88 339.0
73 TraesCS7D01G273000 chr2B 84.682 346 32 13 8949 9282 384320406 384320070 9.170000e-85 326.0
74 TraesCS7D01G273000 chr2B 78.059 237 30 15 65 293 3201480 3201258 7.720000e-26 130.0
75 TraesCS7D01G273000 chr5D 75.415 301 60 13 1 292 270239128 270239423 5.970000e-27 134.0
76 TraesCS7D01G273000 chr5D 88.406 69 6 2 355 422 14130581 14130514 2.190000e-11 82.4
77 TraesCS7D01G273000 chr5D 97.143 35 0 1 372 406 237469701 237469668 3.690000e-04 58.4
78 TraesCS7D01G273000 chr5B 89.189 74 8 0 601 674 11687173 11687100 1.010000e-14 93.5
79 TraesCS7D01G273000 chr5B 86.842 76 4 5 7726 7798 312594332 312594260 7.880000e-11 80.5
80 TraesCS7D01G273000 chr5B 97.436 39 1 0 7722 7760 572401779 572401741 6.140000e-07 67.6
81 TraesCS7D01G273000 chr6B 87.500 72 8 1 7726 7796 255522208 255522279 2.190000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G273000 chr7D 263522510 263531978 9468 True 17487.000000 17487 100.000000 1 9469 1 chr7D.!!$R3 9468
1 TraesCS7D01G273000 chr7D 55614002 55614680 678 True 813.000000 813 88.244000 5551 6238 1 chr7D.!!$R2 687
2 TraesCS7D01G273000 chr7A 286528946 286538291 9345 True 1370.750000 4152 93.516375 554 9469 8 chr7A.!!$R3 8915
3 TraesCS7D01G273000 chr7A 183828855 183829641 786 False 782.000000 782 84.635000 5448 6238 1 chr7A.!!$F1 790
4 TraesCS7D01G273000 chr7A 68020581 68021737 1156 False 501.000000 857 82.394000 4729 6232 2 chr7A.!!$F3 1503
5 TraesCS7D01G273000 chr7B 703941092 703942133 1041 False 1273.000000 1273 88.836000 4764 5808 1 chr7B.!!$F1 1044
6 TraesCS7D01G273000 chr7B 243267460 243276966 9506 True 877.127273 2294 93.041909 816 9469 11 chr7B.!!$R2 8653
7 TraesCS7D01G273000 chr4A 615042781 615044181 1400 False 1666.000000 1666 88.100000 4732 6161 1 chr4A.!!$F1 1429
8 TraesCS7D01G273000 chr3D 54624358 54625143 785 False 1177.000000 1177 93.655000 5402 6189 1 chr3D.!!$F4 787
9 TraesCS7D01G273000 chr3D 30289087 30289650 563 False 219.000000 219 74.832000 32 604 1 chr3D.!!$F1 572
10 TraesCS7D01G273000 chr1B 32076192 32077126 934 True 1151.000000 1151 88.960000 5307 6241 1 chr1B.!!$R1 934
11 TraesCS7D01G273000 chr1B 32201209 32202405 1196 True 968.000000 968 81.530000 4826 6038 1 chr1B.!!$R2 1212
12 TraesCS7D01G273000 chr3A 503853806 503854829 1023 True 1118.000000 1118 86.692000 5024 6038 1 chr3A.!!$R2 1014
13 TraesCS7D01G273000 chr6A 123260616 123261445 829 False 1007.000000 1007 88.517000 5405 6240 1 chr6A.!!$F2 835
14 TraesCS7D01G273000 chr2D 38203228 38203874 646 True 865.000000 865 90.755000 5591 6239 1 chr2D.!!$R1 648
15 TraesCS7D01G273000 chrUn 48618973 48620671 1698 False 504.500000 785 82.247500 4798 6238 2 chrUn.!!$F3 1440
16 TraesCS7D01G273000 chr4D 4050124 4050638 514 False 253.500000 396 85.816500 8767 9311 2 chr4D.!!$F3 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 926 0.669318 TTTGGTCGCTACAGCCGAAG 60.669 55.000 0.00 0.00 37.91 3.79 F
1410 1470 1.694525 GAGGGAGGGGAAGGGGAAG 60.695 68.421 0.00 0.00 0.00 3.46 F
3128 4516 0.111061 ACCTGCAAGCACATCCTTCA 59.889 50.000 0.00 0.00 0.00 3.02 F
4525 8078 0.037882 TCTCAGCTCACGCTTTCCTG 60.038 55.000 0.00 0.00 46.47 3.86 F
4526 8079 0.037882 CTCAGCTCACGCTTTCCTGA 60.038 55.000 0.00 0.00 46.47 3.86 F
4610 8353 0.188342 AGGCACTGACCACCCAAAAT 59.812 50.000 0.00 0.00 37.18 1.82 F
6063 10438 0.388263 GACGTCCGGTGGTTTCTCTC 60.388 60.000 3.51 0.00 0.00 3.20 F
6198 10575 0.462937 TTGTATCGGTTCGGCCATGG 60.463 55.000 7.63 7.63 36.97 3.66 F
6837 11235 1.023513 AGCTGCGCAAGGTGATTCTC 61.024 55.000 13.05 0.00 34.56 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 3418 0.469892 TGGAGAGTGCAGAGTGGTCA 60.470 55.000 0.0 0.00 0.00 4.02 R
3225 4613 0.033504 GACAACGTTCTGCCAGGAGA 59.966 55.000 0.0 0.00 0.00 3.71 R
4549 8102 0.105039 GATGGCGTAAGAGGGACTGG 59.895 60.000 0.0 0.00 41.55 4.00 R
5737 10097 0.313043 GACCGAAGACACCGTCAAGA 59.687 55.000 0.0 0.00 34.60 3.02 R
6241 10618 0.640262 CACCGATCATGACGTTGTCG 59.360 55.000 0.0 2.74 43.34 4.35 R
6282 10659 1.003118 TGGCATAGAAGAACGGTGCTT 59.997 47.619 0.0 0.00 35.36 3.91 R
7584 11994 0.991920 TTTGCCCCCTAACTGGAGAG 59.008 55.000 0.0 0.00 38.35 3.20 R
8182 12914 3.888930 ACACGACCATGTTTTTCCATCTT 59.111 39.130 0.0 0.00 0.00 2.40 R
8805 13540 0.250234 CTGAGGTTGGATCGGAGCAA 59.750 55.000 0.0 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 66 4.966965 TTTGCACTTGTTTCTTCGGTTA 57.033 36.364 0.00 0.00 0.00 2.85
65 68 5.508200 TTGCACTTGTTTCTTCGGTTATT 57.492 34.783 0.00 0.00 0.00 1.40
173 193 9.944663 TGTGTCAAGAACATTTTTCTAATACAC 57.055 29.630 13.05 13.05 40.80 2.90
174 194 9.394477 GTGTCAAGAACATTTTTCTAATACACC 57.606 33.333 10.74 0.00 40.80 4.16
175 195 8.573035 TGTCAAGAACATTTTTCTAATACACCC 58.427 33.333 0.00 0.00 31.20 4.61
177 197 7.726291 TCAAGAACATTTTTCTAATACACCCCA 59.274 33.333 0.00 0.00 0.00 4.96
179 199 7.892609 AGAACATTTTTCTAATACACCCCAAC 58.107 34.615 0.00 0.00 0.00 3.77
180 200 7.507616 AGAACATTTTTCTAATACACCCCAACA 59.492 33.333 0.00 0.00 0.00 3.33
181 201 7.790782 ACATTTTTCTAATACACCCCAACAT 57.209 32.000 0.00 0.00 0.00 2.71
186 206 9.549078 TTTTTCTAATACACCCCAACATTTTTC 57.451 29.630 0.00 0.00 0.00 2.29
187 207 6.503589 TCTAATACACCCCAACATTTTTCG 57.496 37.500 0.00 0.00 0.00 3.46
188 208 6.239396 TCTAATACACCCCAACATTTTTCGA 58.761 36.000 0.00 0.00 0.00 3.71
191 211 3.787785 ACACCCCAACATTTTTCGAAAC 58.212 40.909 10.79 0.00 0.00 2.78
196 216 4.269844 CCCCAACATTTTTCGAAACACAAG 59.730 41.667 10.79 1.02 0.00 3.16
230 250 8.586570 TGTTGAATACATGACCAACATTTTTC 57.413 30.769 16.51 0.00 42.43 2.29
294 327 6.509418 TTTTCCAGTACAAGAATACATGGC 57.491 37.500 0.00 0.00 0.00 4.40
295 328 4.835284 TCCAGTACAAGAATACATGGCA 57.165 40.909 0.00 0.00 0.00 4.92
303 336 8.028938 AGTACAAGAATACATGGCAAACATTTC 58.971 33.333 0.00 0.00 37.84 2.17
305 338 6.869913 ACAAGAATACATGGCAAACATTTCTG 59.130 34.615 0.00 0.00 37.84 3.02
306 339 6.839124 AGAATACATGGCAAACATTTCTGA 57.161 33.333 0.00 0.00 37.84 3.27
310 346 5.217978 ACATGGCAAACATTTCTGAACAT 57.782 34.783 0.00 0.00 37.84 2.71
312 348 6.938507 ACATGGCAAACATTTCTGAACATAT 58.061 32.000 0.00 0.00 37.84 1.78
317 353 8.557864 TGGCAAACATTTCTGAACATATTTTTG 58.442 29.630 7.38 7.38 0.00 2.44
347 383 9.995003 ATTTTCAAAAGCTTGATTAACATACCA 57.005 25.926 0.00 0.00 41.22 3.25
348 384 8.810652 TTTCAAAAGCTTGATTAACATACCAC 57.189 30.769 0.00 0.00 41.22 4.16
349 385 6.607689 TCAAAAGCTTGATTAACATACCACG 58.392 36.000 0.00 0.00 36.62 4.94
350 386 4.616181 AAGCTTGATTAACATACCACGC 57.384 40.909 0.00 0.00 0.00 5.34
351 387 3.605634 AGCTTGATTAACATACCACGCA 58.394 40.909 0.00 0.00 0.00 5.24
352 388 4.006989 AGCTTGATTAACATACCACGCAA 58.993 39.130 0.00 0.00 0.00 4.85
353 389 4.457603 AGCTTGATTAACATACCACGCAAA 59.542 37.500 0.00 0.00 0.00 3.68
354 390 5.048364 AGCTTGATTAACATACCACGCAAAA 60.048 36.000 0.00 0.00 0.00 2.44
355 391 5.631512 GCTTGATTAACATACCACGCAAAAA 59.368 36.000 0.00 0.00 0.00 1.94
499 536 8.840321 AGATTAATATTTTGGAAGACATGGTCG 58.160 33.333 0.00 0.00 37.67 4.79
500 537 8.746052 ATTAATATTTTGGAAGACATGGTCGA 57.254 30.769 0.00 0.00 37.67 4.20
501 538 8.568676 TTAATATTTTGGAAGACATGGTCGAA 57.431 30.769 0.00 0.00 37.67 3.71
502 539 7.461182 AATATTTTGGAAGACATGGTCGAAA 57.539 32.000 0.00 0.00 37.67 3.46
503 540 5.782893 ATTTTGGAAGACATGGTCGAAAA 57.217 34.783 14.14 14.14 37.67 2.29
504 541 5.584253 TTTTGGAAGACATGGTCGAAAAA 57.416 34.783 11.22 7.22 37.67 1.94
539 576 9.824534 ACAGTTTTAACATTTTTCAAAAGCTTG 57.175 25.926 0.00 0.00 0.00 4.01
679 716 6.919721 TCAAATACTTGGTTAGCATTGGTTC 58.080 36.000 0.00 0.00 33.01 3.62
690 727 6.931840 GGTTAGCATTGGTTCCAAATGTTTTA 59.068 34.615 8.38 1.82 0.00 1.52
696 733 8.778358 GCATTGGTTCCAAATGTTTTAATGTAA 58.222 29.630 8.38 0.00 0.00 2.41
755 810 6.956047 AGGTAAAAGAGTAAAGCAGAAAACG 58.044 36.000 0.00 0.00 0.00 3.60
764 819 8.671028 AGAGTAAAGCAGAAAACGAAAACTAAA 58.329 29.630 0.00 0.00 0.00 1.85
797 852 7.713764 AAAGAAACAATAAAATGTGGCTGTC 57.286 32.000 0.00 0.00 32.81 3.51
799 854 4.846779 AACAATAAAATGTGGCTGTCGT 57.153 36.364 0.00 0.00 32.81 4.34
838 893 1.383456 GCCCAATGCCGTGAATGCTA 61.383 55.000 0.00 0.00 0.00 3.49
840 895 1.382522 CCAATGCCGTGAATGCTAGT 58.617 50.000 0.00 0.00 0.00 2.57
841 896 1.064505 CCAATGCCGTGAATGCTAGTG 59.935 52.381 0.00 0.00 0.00 2.74
842 897 1.064505 CAATGCCGTGAATGCTAGTGG 59.935 52.381 0.00 0.00 0.00 4.00
844 899 2.472909 GCCGTGAATGCTAGTGGGC 61.473 63.158 0.00 0.00 0.00 5.36
845 900 1.078497 CCGTGAATGCTAGTGGGCA 60.078 57.895 0.00 0.00 46.63 5.36
866 926 0.669318 TTTGGTCGCTACAGCCGAAG 60.669 55.000 0.00 0.00 37.91 3.79
926 986 2.125673 CGCTGAACCCGAACCGAT 60.126 61.111 0.00 0.00 0.00 4.18
1143 1203 4.796231 GTCGACATCCGCCGCTGT 62.796 66.667 11.55 0.00 38.37 4.40
1410 1470 1.694525 GAGGGAGGGGAAGGGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
1614 1674 2.951642 GTGAGGACTCTGGATCTCTCTG 59.048 54.545 0.56 0.00 0.00 3.35
1804 1866 4.566004 TGCCTGTGCACTTACTAACTTAG 58.434 43.478 19.41 2.36 44.23 2.18
2039 3418 2.395619 CCCTCTACATAGACCCCGTTT 58.604 52.381 0.00 0.00 0.00 3.60
2097 3476 1.145803 GTTCAACACGGCAGAGGTAC 58.854 55.000 0.00 0.00 0.00 3.34
2182 3561 5.773680 AGGTTGTGCGATAGTATAGGTACAT 59.226 40.000 0.00 0.00 39.35 2.29
2183 3562 6.267014 AGGTTGTGCGATAGTATAGGTACATT 59.733 38.462 0.00 0.00 39.35 2.71
2309 3688 2.056906 AAAGCCAAGGTCAGCCGAGT 62.057 55.000 0.00 0.00 40.50 4.18
2313 3692 1.591703 CAAGGTCAGCCGAGTAGCA 59.408 57.895 0.00 0.00 40.50 3.49
2424 3803 2.429236 ACGAAGTCGACGCTGCTG 60.429 61.111 10.46 0.98 29.74 4.41
2425 3804 3.832171 CGAAGTCGACGCTGCTGC 61.832 66.667 10.46 5.34 43.02 5.25
2426 3805 2.431601 GAAGTCGACGCTGCTGCT 60.432 61.111 10.46 0.67 36.97 4.24
2532 3912 6.587206 TTGCAATGACAACATCCTTATCAA 57.413 33.333 0.00 0.00 35.50 2.57
2660 4040 3.432051 ATGGCAGAGTACGAGCGCC 62.432 63.158 2.29 10.55 43.28 6.53
2738 4118 2.118732 TGCCCTGGTACCTCGACA 59.881 61.111 14.36 3.82 0.00 4.35
2739 4119 1.305802 TGCCCTGGTACCTCGACAT 60.306 57.895 14.36 0.00 0.00 3.06
2783 4163 1.402613 TCAACGTGTCTGTCTTCGTCA 59.597 47.619 0.00 0.00 35.49 4.35
2795 4175 2.989840 GTCTTCGTCAGACCACATGAAG 59.010 50.000 0.00 8.22 45.84 3.02
2836 4216 1.093159 GAAGTTCGGCGAGGACTCTA 58.907 55.000 14.02 0.00 0.00 2.43
2914 4294 5.952064 CACTGCGAATTAAAGAACGTGTATC 59.048 40.000 0.00 0.00 0.00 2.24
3022 4410 1.605753 GTCCGCAAAAGAACCTCCTT 58.394 50.000 0.00 0.00 0.00 3.36
3062 4450 4.260985 CCTAAGCACATGTACACCATTCA 58.739 43.478 0.00 0.00 0.00 2.57
3112 4500 4.668151 CGAGGAGCAGACCTACCT 57.332 61.111 0.00 0.00 40.73 3.08
3128 4516 0.111061 ACCTGCAAGCACATCCTTCA 59.889 50.000 0.00 0.00 0.00 3.02
3131 4519 1.816835 CTGCAAGCACATCCTTCACAT 59.183 47.619 0.00 0.00 0.00 3.21
3137 4525 2.153645 GCACATCCTTCACATGTCACA 58.846 47.619 0.00 0.00 31.83 3.58
3138 4526 2.161012 GCACATCCTTCACATGTCACAG 59.839 50.000 0.00 0.00 31.83 3.66
3181 4569 3.374402 CACCCGAGGAGACGCACT 61.374 66.667 0.00 0.00 0.00 4.40
3223 4611 1.779092 AGAGGTGCCTGGCATGATAAT 59.221 47.619 26.22 7.28 41.91 1.28
3225 4613 3.590630 AGAGGTGCCTGGCATGATAATAT 59.409 43.478 26.22 4.72 41.91 1.28
3226 4614 3.944015 GAGGTGCCTGGCATGATAATATC 59.056 47.826 26.22 8.14 41.91 1.63
3250 4638 1.333308 TGGCAGAACGTTGTCATGTTG 59.667 47.619 5.00 0.00 31.82 3.33
3380 6926 1.082756 CACGACAACAAGAAGCGGC 60.083 57.895 0.00 0.00 0.00 6.53
3403 6949 3.062466 GGCAACCCTTTCGCCCTC 61.062 66.667 0.00 0.00 40.07 4.30
3580 7126 3.056607 GCAACCCAATATGCAGTTCAACT 60.057 43.478 0.00 0.00 42.12 3.16
3590 7136 3.146066 TGCAGTTCAACTACAATGTCCC 58.854 45.455 0.00 0.00 0.00 4.46
3666 7212 1.186200 CCTTGGATGAGGAGACGACA 58.814 55.000 0.00 0.00 39.25 4.35
3697 7243 1.549203 AAAATGCGTGGCTCCTCATT 58.451 45.000 0.00 0.00 0.00 2.57
3796 7342 1.060163 GCCTTGGTCCCATAGGCCTA 61.060 60.000 16.60 16.60 40.72 3.93
3818 7364 2.404559 AGTGGGTGTACAAGGTCAAGA 58.595 47.619 0.00 0.00 0.00 3.02
3909 7456 3.157087 GGTGGACCATGATGAAGTGTTT 58.843 45.455 0.00 0.00 35.64 2.83
3927 7474 2.048127 GCCCTTGTCGCTCGTCTT 60.048 61.111 0.00 0.00 0.00 3.01
3954 7501 0.606401 TGCGGCTTTTGCTAGCTCTT 60.606 50.000 17.23 0.00 46.54 2.85
4080 7628 2.457366 TTCGGACAAGAGAGGAAAGC 57.543 50.000 0.00 0.00 0.00 3.51
4134 7682 4.141144 CACCACGTGCTTGGAACT 57.859 55.556 10.91 0.00 39.24 3.01
4162 7710 1.790838 CGATCGTGTCCGTTCTCACTC 60.791 57.143 7.03 0.00 32.00 3.51
4224 7772 2.281070 CTGGCAGCACCACGTCTT 60.281 61.111 0.00 0.00 46.36 3.01
4227 7775 2.186826 GGCAGCACCACGTCTTGTT 61.187 57.895 0.00 0.00 38.86 2.83
4241 7789 1.748493 TCTTGTTTGCTTGTGGTGTCC 59.252 47.619 0.00 0.00 0.00 4.02
4339 7892 5.673514 TCGGTACCTTGAGTTTTTACTTGT 58.326 37.500 10.90 0.00 0.00 3.16
4356 7909 1.262417 TGTGGATCGAGGTGTGCTAA 58.738 50.000 0.00 0.00 0.00 3.09
4357 7910 1.204704 TGTGGATCGAGGTGTGCTAAG 59.795 52.381 0.00 0.00 0.00 2.18
4358 7911 0.824109 TGGATCGAGGTGTGCTAAGG 59.176 55.000 0.00 0.00 0.00 2.69
4359 7912 0.105039 GGATCGAGGTGTGCTAAGGG 59.895 60.000 0.00 0.00 0.00 3.95
4360 7913 1.112113 GATCGAGGTGTGCTAAGGGA 58.888 55.000 0.00 0.00 0.00 4.20
4361 7914 1.480954 GATCGAGGTGTGCTAAGGGAA 59.519 52.381 0.00 0.00 0.00 3.97
4362 7915 1.568504 TCGAGGTGTGCTAAGGGAAT 58.431 50.000 0.00 0.00 0.00 3.01
4363 7916 1.480954 TCGAGGTGTGCTAAGGGAATC 59.519 52.381 0.00 0.00 0.00 2.52
4364 7917 1.482593 CGAGGTGTGCTAAGGGAATCT 59.517 52.381 0.00 0.00 0.00 2.40
4365 7918 2.093447 CGAGGTGTGCTAAGGGAATCTT 60.093 50.000 0.00 0.00 39.40 2.40
4366 7919 3.536570 GAGGTGTGCTAAGGGAATCTTC 58.463 50.000 0.00 0.00 36.93 2.87
4367 7920 3.185455 AGGTGTGCTAAGGGAATCTTCT 58.815 45.455 0.00 0.00 36.93 2.85
4368 7921 3.589288 AGGTGTGCTAAGGGAATCTTCTT 59.411 43.478 0.00 0.00 36.93 2.52
4369 7922 3.691609 GGTGTGCTAAGGGAATCTTCTTG 59.308 47.826 0.00 0.00 36.93 3.02
4370 7923 4.327680 GTGTGCTAAGGGAATCTTCTTGT 58.672 43.478 0.00 0.00 36.93 3.16
4371 7924 4.762251 GTGTGCTAAGGGAATCTTCTTGTT 59.238 41.667 0.00 0.00 36.93 2.83
4372 7925 5.003804 TGTGCTAAGGGAATCTTCTTGTTC 58.996 41.667 0.00 0.00 36.93 3.18
4373 7926 4.093556 GTGCTAAGGGAATCTTCTTGTTCG 59.906 45.833 0.00 0.00 36.93 3.95
4374 7927 4.020573 TGCTAAGGGAATCTTCTTGTTCGA 60.021 41.667 0.00 0.00 36.93 3.71
4375 7928 4.935808 GCTAAGGGAATCTTCTTGTTCGAA 59.064 41.667 0.00 0.00 36.93 3.71
4376 7929 5.586643 GCTAAGGGAATCTTCTTGTTCGAAT 59.413 40.000 0.00 0.00 36.93 3.34
4377 7930 5.886960 AAGGGAATCTTCTTGTTCGAATG 57.113 39.130 0.00 0.00 0.00 2.67
4378 7931 4.265073 AGGGAATCTTCTTGTTCGAATGG 58.735 43.478 0.00 0.00 0.00 3.16
4379 7932 4.019321 AGGGAATCTTCTTGTTCGAATGGA 60.019 41.667 0.00 0.00 0.00 3.41
4380 7933 4.700213 GGGAATCTTCTTGTTCGAATGGAA 59.300 41.667 0.00 5.76 0.00 3.53
4381 7934 5.163713 GGGAATCTTCTTGTTCGAATGGAAG 60.164 44.000 21.12 21.12 34.69 3.46
4382 7935 5.643777 GGAATCTTCTTGTTCGAATGGAAGA 59.356 40.000 26.60 26.60 43.86 2.87
4385 7938 7.693969 ATCTTCTTGTTCGAATGGAAGATTT 57.306 32.000 27.76 18.18 45.55 2.17
4386 7939 7.510549 TCTTCTTGTTCGAATGGAAGATTTT 57.489 32.000 23.59 0.00 37.88 1.82
4387 7940 7.584987 TCTTCTTGTTCGAATGGAAGATTTTC 58.415 34.615 23.59 2.85 37.88 2.29
4388 7941 5.927030 TCTTGTTCGAATGGAAGATTTTCG 58.073 37.500 0.00 0.00 42.60 3.46
4389 7942 5.699001 TCTTGTTCGAATGGAAGATTTTCGA 59.301 36.000 0.00 3.14 46.61 3.71
4394 7947 6.408858 TCGAATGGAAGATTTTCGAAAGAG 57.591 37.500 10.98 0.00 45.67 2.85
4395 7948 5.351465 TCGAATGGAAGATTTTCGAAAGAGG 59.649 40.000 10.98 0.00 45.67 3.69
4396 7949 5.447818 CGAATGGAAGATTTTCGAAAGAGGG 60.448 44.000 10.98 0.00 43.61 4.30
4397 7950 3.686016 TGGAAGATTTTCGAAAGAGGGG 58.314 45.455 10.98 0.00 43.69 4.79
4398 7951 3.329520 TGGAAGATTTTCGAAAGAGGGGA 59.670 43.478 10.98 0.00 43.69 4.81
4399 7952 3.942115 GGAAGATTTTCGAAAGAGGGGAG 59.058 47.826 10.98 0.00 43.69 4.30
4400 7953 4.323562 GGAAGATTTTCGAAAGAGGGGAGA 60.324 45.833 10.98 0.00 43.69 3.71
4401 7954 4.910458 AGATTTTCGAAAGAGGGGAGAA 57.090 40.909 10.98 0.00 43.69 2.87
4402 7955 5.242795 AGATTTTCGAAAGAGGGGAGAAA 57.757 39.130 10.98 0.00 43.69 2.52
4403 7956 5.821097 AGATTTTCGAAAGAGGGGAGAAAT 58.179 37.500 10.98 0.00 43.69 2.17
4404 7957 5.883115 AGATTTTCGAAAGAGGGGAGAAATC 59.117 40.000 10.98 7.16 43.69 2.17
4405 7958 4.634012 TTTCGAAAGAGGGGAGAAATCA 57.366 40.909 6.47 0.00 43.69 2.57
4406 7959 4.634012 TTCGAAAGAGGGGAGAAATCAA 57.366 40.909 0.00 0.00 43.69 2.57
4407 7960 4.844349 TCGAAAGAGGGGAGAAATCAAT 57.156 40.909 0.00 0.00 34.84 2.57
4408 7961 4.770795 TCGAAAGAGGGGAGAAATCAATC 58.229 43.478 0.00 0.00 34.84 2.67
4409 7962 4.225042 TCGAAAGAGGGGAGAAATCAATCA 59.775 41.667 0.00 0.00 34.84 2.57
4410 7963 4.333926 CGAAAGAGGGGAGAAATCAATCAC 59.666 45.833 0.00 0.00 0.00 3.06
4411 7964 4.934797 AAGAGGGGAGAAATCAATCACA 57.065 40.909 0.00 0.00 0.00 3.58
4412 7965 5.463051 AAGAGGGGAGAAATCAATCACAT 57.537 39.130 0.00 0.00 0.00 3.21
4413 7966 4.789807 AGAGGGGAGAAATCAATCACATG 58.210 43.478 0.00 0.00 0.00 3.21
4414 7967 3.294214 AGGGGAGAAATCAATCACATGC 58.706 45.455 0.00 0.00 0.00 4.06
4415 7968 2.033801 GGGGAGAAATCAATCACATGCG 59.966 50.000 0.00 0.00 0.00 4.73
4416 7969 2.684881 GGGAGAAATCAATCACATGCGT 59.315 45.455 0.00 0.00 0.00 5.24
4417 7970 3.488047 GGGAGAAATCAATCACATGCGTG 60.488 47.826 3.82 3.82 45.08 5.34
4426 7979 2.001357 CACATGCGTGAGTGGATCG 58.999 57.895 14.17 0.00 46.80 3.69
4427 7980 0.458370 CACATGCGTGAGTGGATCGA 60.458 55.000 14.17 0.00 46.80 3.59
4428 7981 0.179127 ACATGCGTGAGTGGATCGAG 60.179 55.000 14.17 0.00 0.00 4.04
4429 7982 1.227089 ATGCGTGAGTGGATCGAGC 60.227 57.895 0.00 0.00 34.62 5.03
4430 7983 1.670949 ATGCGTGAGTGGATCGAGCT 61.671 55.000 0.00 0.00 34.97 4.09
4431 7984 1.029947 TGCGTGAGTGGATCGAGCTA 61.030 55.000 0.00 0.00 34.97 3.32
4432 7985 0.312416 GCGTGAGTGGATCGAGCTAT 59.688 55.000 0.00 0.00 32.26 2.97
4433 7986 1.269309 GCGTGAGTGGATCGAGCTATT 60.269 52.381 0.00 0.00 32.26 1.73
4434 7987 2.031069 GCGTGAGTGGATCGAGCTATTA 60.031 50.000 0.00 0.00 32.26 0.98
4435 7988 3.366476 GCGTGAGTGGATCGAGCTATTAT 60.366 47.826 0.00 0.00 32.26 1.28
4436 7989 4.142665 GCGTGAGTGGATCGAGCTATTATA 60.143 45.833 0.00 0.00 32.26 0.98
4437 7990 5.449314 GCGTGAGTGGATCGAGCTATTATAT 60.449 44.000 0.00 0.00 32.26 0.86
4438 7991 6.238402 GCGTGAGTGGATCGAGCTATTATATA 60.238 42.308 0.00 0.00 32.26 0.86
4439 7992 7.678927 GCGTGAGTGGATCGAGCTATTATATAA 60.679 40.741 0.00 0.00 32.26 0.98
4440 7993 8.346300 CGTGAGTGGATCGAGCTATTATATAAT 58.654 37.037 12.51 12.51 0.00 1.28
4450 8003 9.941664 TCGAGCTATTATATAATAAGTAACGGC 57.058 33.333 14.61 12.32 0.00 5.68
4451 8004 9.947669 CGAGCTATTATATAATAAGTAACGGCT 57.052 33.333 16.81 16.81 0.00 5.52
4475 8028 7.865706 TGAAAAAGCTATTCTTGGTAGATCC 57.134 36.000 12.01 0.00 34.67 3.36
4476 8029 7.402054 TGAAAAAGCTATTCTTGGTAGATCCA 58.598 34.615 12.01 0.00 45.60 3.41
4486 8039 3.981071 TGGTAGATCCACTTGTCAAGG 57.019 47.619 16.85 5.91 41.93 3.61
4487 8040 2.027192 TGGTAGATCCACTTGTCAAGGC 60.027 50.000 16.85 1.39 41.93 4.35
4488 8041 2.271800 GTAGATCCACTTGTCAAGGCG 58.728 52.381 16.85 7.32 0.00 5.52
4489 8042 0.674895 AGATCCACTTGTCAAGGCGC 60.675 55.000 16.85 0.00 0.00 6.53
4490 8043 1.970917 GATCCACTTGTCAAGGCGCG 61.971 60.000 16.85 0.00 0.00 6.86
4491 8044 3.726517 CCACTTGTCAAGGCGCGG 61.727 66.667 16.85 7.68 0.00 6.46
4492 8045 2.664851 CACTTGTCAAGGCGCGGA 60.665 61.111 16.85 0.00 0.00 5.54
4493 8046 2.110213 ACTTGTCAAGGCGCGGAA 59.890 55.556 16.85 0.00 0.00 4.30
4494 8047 1.525077 ACTTGTCAAGGCGCGGAAA 60.525 52.632 16.85 0.00 0.00 3.13
4495 8048 1.207593 CTTGTCAAGGCGCGGAAAG 59.792 57.895 8.83 2.77 0.00 2.62
4496 8049 2.786564 CTTGTCAAGGCGCGGAAAGC 62.787 60.000 8.83 0.00 43.95 3.51
4508 8061 3.324207 GGAAAGCCGTGTTCCTTCT 57.676 52.632 2.60 0.00 41.25 2.85
4509 8062 1.157585 GGAAAGCCGTGTTCCTTCTC 58.842 55.000 2.60 0.00 41.25 2.87
4510 8063 1.542547 GGAAAGCCGTGTTCCTTCTCA 60.543 52.381 2.60 0.00 41.25 3.27
4511 8064 1.801178 GAAAGCCGTGTTCCTTCTCAG 59.199 52.381 0.00 0.00 0.00 3.35
4512 8065 0.603975 AAGCCGTGTTCCTTCTCAGC 60.604 55.000 0.00 0.00 0.00 4.26
4513 8066 1.004440 GCCGTGTTCCTTCTCAGCT 60.004 57.895 0.00 0.00 0.00 4.24
4514 8067 1.016653 GCCGTGTTCCTTCTCAGCTC 61.017 60.000 0.00 0.00 0.00 4.09
4515 8068 0.318441 CCGTGTTCCTTCTCAGCTCA 59.682 55.000 0.00 0.00 0.00 4.26
4516 8069 1.423395 CGTGTTCCTTCTCAGCTCAC 58.577 55.000 0.00 0.00 0.00 3.51
4517 8070 1.423395 GTGTTCCTTCTCAGCTCACG 58.577 55.000 0.00 0.00 0.00 4.35
4518 8071 0.319900 TGTTCCTTCTCAGCTCACGC 60.320 55.000 0.00 0.00 0.00 5.34
4520 8073 0.681733 TTCCTTCTCAGCTCACGCTT 59.318 50.000 0.00 0.00 46.47 4.68
4521 8074 0.681733 TCCTTCTCAGCTCACGCTTT 59.318 50.000 0.00 0.00 46.47 3.51
4522 8075 1.074752 CCTTCTCAGCTCACGCTTTC 58.925 55.000 0.00 0.00 46.47 2.62
4523 8076 1.074752 CTTCTCAGCTCACGCTTTCC 58.925 55.000 0.00 0.00 46.47 3.13
4524 8077 0.681733 TTCTCAGCTCACGCTTTCCT 59.318 50.000 0.00 0.00 46.47 3.36
4525 8078 0.037882 TCTCAGCTCACGCTTTCCTG 60.038 55.000 0.00 0.00 46.47 3.86
4526 8079 0.037882 CTCAGCTCACGCTTTCCTGA 60.038 55.000 0.00 0.00 46.47 3.86
4527 8080 0.610174 TCAGCTCACGCTTTCCTGAT 59.390 50.000 0.00 0.00 46.47 2.90
4528 8081 1.002430 TCAGCTCACGCTTTCCTGATT 59.998 47.619 0.00 0.00 46.47 2.57
4529 8082 1.129998 CAGCTCACGCTTTCCTGATTG 59.870 52.381 0.00 0.00 46.47 2.67
4530 8083 1.002430 AGCTCACGCTTTCCTGATTGA 59.998 47.619 0.00 0.00 46.47 2.57
4531 8084 2.012673 GCTCACGCTTTCCTGATTGAT 58.987 47.619 0.00 0.00 0.00 2.57
4532 8085 2.421424 GCTCACGCTTTCCTGATTGATT 59.579 45.455 0.00 0.00 0.00 2.57
4533 8086 3.119708 GCTCACGCTTTCCTGATTGATTT 60.120 43.478 0.00 0.00 0.00 2.17
4534 8087 4.409570 CTCACGCTTTCCTGATTGATTTG 58.590 43.478 0.00 0.00 0.00 2.32
4535 8088 4.071423 TCACGCTTTCCTGATTGATTTGA 58.929 39.130 0.00 0.00 0.00 2.69
4536 8089 4.518590 TCACGCTTTCCTGATTGATTTGAA 59.481 37.500 0.00 0.00 0.00 2.69
4537 8090 5.009510 TCACGCTTTCCTGATTGATTTGAAA 59.990 36.000 0.00 0.00 0.00 2.69
4538 8091 5.344128 CACGCTTTCCTGATTGATTTGAAAG 59.656 40.000 0.00 0.00 42.88 2.62
4539 8092 5.241506 ACGCTTTCCTGATTGATTTGAAAGA 59.758 36.000 12.92 0.00 42.72 2.52
4540 8093 5.570589 CGCTTTCCTGATTGATTTGAAAGAC 59.429 40.000 12.92 5.13 42.72 3.01
4541 8094 5.866092 GCTTTCCTGATTGATTTGAAAGACC 59.134 40.000 12.92 0.00 42.72 3.85
4542 8095 5.982890 TTCCTGATTGATTTGAAAGACCC 57.017 39.130 0.00 0.00 0.00 4.46
4543 8096 5.261040 TCCTGATTGATTTGAAAGACCCT 57.739 39.130 0.00 0.00 0.00 4.34
4544 8097 6.387192 TCCTGATTGATTTGAAAGACCCTA 57.613 37.500 0.00 0.00 0.00 3.53
4545 8098 6.180472 TCCTGATTGATTTGAAAGACCCTAC 58.820 40.000 0.00 0.00 0.00 3.18
4546 8099 5.945784 CCTGATTGATTTGAAAGACCCTACA 59.054 40.000 0.00 0.00 0.00 2.74
4547 8100 6.127897 CCTGATTGATTTGAAAGACCCTACAC 60.128 42.308 0.00 0.00 0.00 2.90
4548 8101 6.303054 TGATTGATTTGAAAGACCCTACACA 58.697 36.000 0.00 0.00 0.00 3.72
4549 8102 6.206634 TGATTGATTTGAAAGACCCTACACAC 59.793 38.462 0.00 0.00 0.00 3.82
4550 8103 4.394729 TGATTTGAAAGACCCTACACACC 58.605 43.478 0.00 0.00 0.00 4.16
4551 8104 3.935818 TTTGAAAGACCCTACACACCA 57.064 42.857 0.00 0.00 0.00 4.17
4610 8353 0.188342 AGGCACTGACCACCCAAAAT 59.812 50.000 0.00 0.00 37.18 1.82
4620 8363 1.010419 CACCCAAAATCTTGCTGCGC 61.010 55.000 0.00 0.00 0.00 6.09
4717 8461 1.113253 CGTCTGCTATAGCGACAACG 58.887 55.000 30.69 25.51 45.83 4.10
4718 8462 1.531264 CGTCTGCTATAGCGACAACGT 60.531 52.381 30.69 0.00 45.83 3.99
4719 8463 2.110226 GTCTGCTATAGCGACAACGTC 58.890 52.381 28.80 12.47 45.83 4.34
5066 8815 2.362503 ACCCTGCGTGGATCTCGA 60.363 61.111 13.15 0.00 38.35 4.04
5070 8819 4.193334 TGCGTGGATCTCGAGCCG 62.193 66.667 7.81 5.80 40.42 5.52
5262 9595 0.998928 ATGGTTGTAGGCCATGGTCA 59.001 50.000 20.74 7.96 44.36 4.02
5271 9616 2.671070 CCATGGTCAACGGGAGCT 59.329 61.111 2.57 0.00 44.40 4.09
5272 9617 1.746615 CCATGGTCAACGGGAGCTG 60.747 63.158 2.57 5.87 44.40 4.24
5273 9618 2.045926 ATGGTCAACGGGAGCTGC 60.046 61.111 0.00 0.00 44.40 5.25
5274 9619 3.958147 ATGGTCAACGGGAGCTGCG 62.958 63.158 0.00 0.00 44.40 5.18
5713 10072 1.822990 GTCGTTGTGGTATCTCTCCCA 59.177 52.381 0.00 0.00 0.00 4.37
5737 10097 0.537371 CAGGGCTTCGGGTGAAAACT 60.537 55.000 0.00 0.00 32.66 2.66
5744 10104 1.860676 TCGGGTGAAAACTCTTGACG 58.139 50.000 0.00 0.00 0.00 4.35
6063 10438 0.388263 GACGTCCGGTGGTTTCTCTC 60.388 60.000 3.51 0.00 0.00 3.20
6198 10575 0.462937 TTGTATCGGTTCGGCCATGG 60.463 55.000 7.63 7.63 36.97 3.66
6240 10617 5.231265 GGTGAAAGCCTTTTTCGGTATAG 57.769 43.478 0.00 0.00 0.00 1.31
6241 10618 4.438336 GGTGAAAGCCTTTTTCGGTATAGC 60.438 45.833 0.00 0.00 0.00 2.97
6242 10619 3.372822 TGAAAGCCTTTTTCGGTATAGCG 59.627 43.478 17.98 17.98 0.00 4.26
6243 10620 2.973694 AGCCTTTTTCGGTATAGCGA 57.026 45.000 22.24 22.24 0.00 4.93
6244 10621 2.547826 AGCCTTTTTCGGTATAGCGAC 58.452 47.619 25.43 13.41 0.00 5.19
6245 10622 2.093869 AGCCTTTTTCGGTATAGCGACA 60.094 45.455 25.43 17.27 0.00 4.35
6246 10623 2.674357 GCCTTTTTCGGTATAGCGACAA 59.326 45.455 25.43 21.92 0.00 3.18
6247 10624 3.484721 GCCTTTTTCGGTATAGCGACAAC 60.485 47.826 25.43 10.75 0.00 3.32
6282 10659 2.779506 TCTTGACACTCGTCTGAGCTA 58.220 47.619 0.00 0.00 46.69 3.32
6342 10730 3.681897 CAGTCACTCAAGTAGAATGTGGC 59.318 47.826 0.00 0.00 33.96 5.01
6343 10731 3.324846 AGTCACTCAAGTAGAATGTGGCA 59.675 43.478 0.00 0.00 35.93 4.92
6448 10836 1.992277 GAAGGAGGAGCCAGCCTGA 60.992 63.158 0.00 0.00 38.73 3.86
6629 11027 3.713902 CTCAAGCTCTTGGGTGTGT 57.286 52.632 9.48 0.00 40.78 3.72
6712 11110 4.443978 AGAGGGTGATATTGTTGGGATG 57.556 45.455 0.00 0.00 0.00 3.51
6837 11235 1.023513 AGCTGCGCAAGGTGATTCTC 61.024 55.000 13.05 0.00 34.56 2.87
6980 11379 1.982073 CTCGCGTGAGGGGCAAAATC 61.982 60.000 18.36 0.00 45.20 2.17
6981 11380 2.331893 CGCGTGAGGGGCAAAATCA 61.332 57.895 0.00 0.00 40.85 2.57
7075 11474 3.565902 GGAAGTTTGAGCAGTGCTAAACT 59.434 43.478 28.29 28.29 39.88 2.66
7194 11600 3.485877 GCGTGTCCATGAAATACTGAAGC 60.486 47.826 0.00 0.00 0.00 3.86
7617 12028 3.369366 GGGGGCAAACTGGAATTTGTATG 60.369 47.826 0.68 0.00 40.92 2.39
7719 12130 5.047660 TGACCTTTGTTGTGCAAGTAAACTT 60.048 36.000 0.00 0.00 38.47 2.66
7734 12145 7.668492 CAAGTAAACTTGTAACTACTCCCTCT 58.332 38.462 13.55 0.00 46.11 3.69
7753 12164 7.152645 TCCCTCTGTATCAAAATATAAGACGC 58.847 38.462 0.00 0.00 0.00 5.19
8111 12843 9.339850 GAATATGAGAGAGTTACTACACTACCA 57.660 37.037 0.00 0.00 0.00 3.25
8117 12849 7.659186 AGAGAGTTACTACACTACCACAAAAG 58.341 38.462 0.00 0.00 0.00 2.27
8120 12852 7.924947 AGAGTTACTACACTACCACAAAAGAAC 59.075 37.037 0.00 0.00 0.00 3.01
8125 12857 7.107542 ACTACACTACCACAAAAGAACAAGAA 58.892 34.615 0.00 0.00 0.00 2.52
8212 12944 5.545658 AAAACATGGTCGTGTGATATGAC 57.454 39.130 0.00 0.00 43.27 3.06
8477 13209 3.621715 GTGGAAAGAGTTGAGTTGTCGTT 59.378 43.478 0.00 0.00 0.00 3.85
8636 13369 7.833285 TCCCTTTTACTTTGCTGTTAAATCT 57.167 32.000 0.00 0.00 0.00 2.40
8774 13509 4.142004 GGTATGGGTCATACTGAGAACGTT 60.142 45.833 0.00 0.00 44.16 3.99
8786 13521 0.600255 AGAACGTTTCCTGTGCTCCG 60.600 55.000 0.46 0.00 0.00 4.63
8822 13557 0.250513 AGTTGCTCCGATCCAACCTC 59.749 55.000 8.42 0.00 41.61 3.85
8823 13558 0.036388 GTTGCTCCGATCCAACCTCA 60.036 55.000 2.20 0.00 36.27 3.86
8824 13559 0.250234 TTGCTCCGATCCAACCTCAG 59.750 55.000 0.00 0.00 0.00 3.35
8825 13560 1.522580 GCTCCGATCCAACCTCAGC 60.523 63.158 0.00 0.00 0.00 4.26
8861 13596 3.481559 AAAGAGAGGGACAGGATGAGA 57.518 47.619 0.00 0.00 39.69 3.27
8894 13629 0.172578 TGAACGTATCCTGTGCTCCG 59.827 55.000 0.00 0.00 0.00 4.63
8904 13639 2.432628 GTGCTCCGGACGAACTGG 60.433 66.667 0.00 0.00 45.93 4.00
8947 13686 4.618920 ACAAAACGGACCTGTCTAGATT 57.381 40.909 0.00 0.00 0.00 2.40
8977 13716 1.676014 CCGCCCTGTCTTTTCTACTGG 60.676 57.143 0.00 0.00 36.12 4.00
8978 13717 1.275291 CGCCCTGTCTTTTCTACTGGA 59.725 52.381 0.00 0.00 37.98 3.86
8979 13718 2.675317 CGCCCTGTCTTTTCTACTGGAG 60.675 54.545 0.00 0.00 37.98 3.86
8980 13719 2.303311 GCCCTGTCTTTTCTACTGGAGT 59.697 50.000 0.00 0.00 37.98 3.85
9054 13793 5.522456 TGATTGTTCATTGCTCAACAGTTC 58.478 37.500 0.00 0.00 34.07 3.01
9204 14798 5.953183 GTGTATTTCACATTGGAGCATCAA 58.047 37.500 0.00 0.00 45.51 2.57
9209 14803 2.095110 TCACATTGGAGCATCAAAAGCG 60.095 45.455 0.00 0.00 36.25 4.68
9320 14917 3.161866 GGTGCCAAAAATCCCTGAACTA 58.838 45.455 0.00 0.00 0.00 2.24
9321 14918 3.576550 GGTGCCAAAAATCCCTGAACTAA 59.423 43.478 0.00 0.00 0.00 2.24
9322 14919 4.039852 GGTGCCAAAAATCCCTGAACTAAA 59.960 41.667 0.00 0.00 0.00 1.85
9324 14921 5.010617 GTGCCAAAAATCCCTGAACTAAAGA 59.989 40.000 0.00 0.00 0.00 2.52
9325 14922 5.779771 TGCCAAAAATCCCTGAACTAAAGAT 59.220 36.000 0.00 0.00 0.00 2.40
9327 14924 6.633856 CCAAAAATCCCTGAACTAAAGATGG 58.366 40.000 0.00 0.00 0.00 3.51
9328 14925 6.437162 CCAAAAATCCCTGAACTAAAGATGGA 59.563 38.462 0.00 0.00 0.00 3.41
9331 14928 4.778213 TCCCTGAACTAAAGATGGATGG 57.222 45.455 0.00 0.00 0.00 3.51
9333 14930 4.977739 TCCCTGAACTAAAGATGGATGGAT 59.022 41.667 0.00 0.00 0.00 3.41
9334 14931 5.433051 TCCCTGAACTAAAGATGGATGGATT 59.567 40.000 0.00 0.00 0.00 3.01
9335 14932 5.767168 CCCTGAACTAAAGATGGATGGATTC 59.233 44.000 0.00 0.00 0.00 2.52
9337 14934 6.261826 CCTGAACTAAAGATGGATGGATTCAC 59.738 42.308 0.00 0.00 0.00 3.18
9340 14937 5.118990 ACTAAAGATGGATGGATTCACGTG 58.881 41.667 9.94 9.94 0.00 4.49
9341 14938 3.912496 AAGATGGATGGATTCACGTGA 57.088 42.857 15.76 15.76 0.00 4.35
9342 14939 4.428294 AAGATGGATGGATTCACGTGAT 57.572 40.909 20.80 9.63 0.00 3.06
9343 14940 5.551305 AAGATGGATGGATTCACGTGATA 57.449 39.130 20.80 10.84 0.00 2.15
9344 14941 4.887748 AGATGGATGGATTCACGTGATAC 58.112 43.478 20.80 15.60 0.00 2.24
9385 15016 4.262894 GCTATTGGGAATCGAAGGATGGTA 60.263 45.833 0.00 0.00 31.83 3.25
9424 15055 2.499289 CTCTGAGTAGGCATTGTCACCT 59.501 50.000 0.00 0.00 40.24 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.769536 ACCGAAGAAACAAGTGCAAAAG 58.230 40.909 0.00 0.00 0.00 2.27
148 168 9.394477 GGTGTATTAGAAAAATGTTCTTGACAC 57.606 33.333 12.64 12.64 42.04 3.67
155 175 7.662897 TGTTGGGGTGTATTAGAAAAATGTTC 58.337 34.615 0.00 0.00 0.00 3.18
173 193 3.786635 TGTGTTTCGAAAAATGTTGGGG 58.213 40.909 13.10 0.00 0.00 4.96
174 194 4.867608 ACTTGTGTTTCGAAAAATGTTGGG 59.132 37.500 13.10 1.59 0.00 4.12
175 195 6.401955 AACTTGTGTTTCGAAAAATGTTGG 57.598 33.333 13.10 3.01 31.37 3.77
177 197 9.360093 TGATAAACTTGTGTTTCGAAAAATGTT 57.640 25.926 13.10 10.91 44.35 2.71
181 201 9.360093 ACAATGATAAACTTGTGTTTCGAAAAA 57.640 25.926 13.10 3.93 44.35 1.94
186 206 7.906611 TCAACAATGATAAACTTGTGTTTCG 57.093 32.000 0.00 0.00 44.35 3.46
196 216 9.853555 TTGGTCATGTATTCAACAATGATAAAC 57.146 29.630 0.00 0.00 42.70 2.01
201 221 6.890979 TGTTGGTCATGTATTCAACAATGA 57.109 33.333 16.77 0.00 44.05 2.57
206 226 8.816640 AGAAAAATGTTGGTCATGTATTCAAC 57.183 30.769 12.55 12.55 39.68 3.18
276 296 6.252967 TGTTTGCCATGTATTCTTGTACTG 57.747 37.500 0.00 0.00 0.00 2.74
278 298 8.028938 AGAAATGTTTGCCATGTATTCTTGTAC 58.971 33.333 0.00 0.00 28.24 2.90
284 304 6.867816 TGTTCAGAAATGTTTGCCATGTATTC 59.132 34.615 0.00 0.00 32.82 1.75
292 325 8.772705 TCAAAAATATGTTCAGAAATGTTTGCC 58.227 29.630 4.83 0.00 0.00 4.52
321 357 9.995003 TGGTATGTTAATCAAGCTTTTGAAAAT 57.005 25.926 0.00 0.00 34.24 1.82
330 366 3.605634 TGCGTGGTATGTTAATCAAGCT 58.394 40.909 0.00 0.00 36.04 3.74
474 511 8.836413 TCGACCATGTCTTCCAAAATATTAATC 58.164 33.333 0.00 0.00 0.00 1.75
480 517 6.885952 TTTTCGACCATGTCTTCCAAAATA 57.114 33.333 0.00 0.00 0.00 1.40
513 550 9.824534 CAAGCTTTTGAAAAATGTTAAAACTGT 57.175 25.926 0.00 0.00 0.00 3.55
608 645 9.906660 AGAAAATGTTTCGCATCTATACAAAAA 57.093 25.926 0.00 0.00 36.67 1.94
609 646 9.554724 GAGAAAATGTTTCGCATCTATACAAAA 57.445 29.630 0.37 0.00 36.67 2.44
610 647 8.946085 AGAGAAAATGTTTCGCATCTATACAAA 58.054 29.630 7.13 0.00 36.67 2.83
611 648 8.492673 AGAGAAAATGTTTCGCATCTATACAA 57.507 30.769 7.13 0.00 36.67 2.41
612 649 9.764363 ATAGAGAAAATGTTTCGCATCTATACA 57.236 29.630 7.13 0.00 36.67 2.29
616 653 9.464714 GTCTATAGAGAAAATGTTTCGCATCTA 57.535 33.333 1.64 4.61 32.70 1.98
617 654 7.981789 TGTCTATAGAGAAAATGTTTCGCATCT 59.018 33.333 1.64 2.83 32.70 2.90
618 655 8.131455 TGTCTATAGAGAAAATGTTTCGCATC 57.869 34.615 1.64 0.00 32.70 3.91
619 656 8.668510 ATGTCTATAGAGAAAATGTTTCGCAT 57.331 30.769 1.64 0.00 34.39 4.73
620 657 8.492673 AATGTCTATAGAGAAAATGTTTCGCA 57.507 30.769 1.64 0.00 31.96 5.10
670 707 7.200778 ACATTAAAACATTTGGAACCAATGC 57.799 32.000 7.12 0.00 35.70 3.56
732 787 6.951643 TCGTTTTCTGCTTTACTCTTTTACC 58.048 36.000 0.00 0.00 0.00 2.85
838 893 0.037590 TAGCGACCAAAATGCCCACT 59.962 50.000 0.00 0.00 0.00 4.00
840 895 0.250945 TGTAGCGACCAAAATGCCCA 60.251 50.000 0.00 0.00 0.00 5.36
841 896 0.451783 CTGTAGCGACCAAAATGCCC 59.548 55.000 0.00 0.00 0.00 5.36
842 897 0.179163 GCTGTAGCGACCAAAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
844 899 0.096976 CGGCTGTAGCGACCAAAATG 59.903 55.000 0.00 0.00 43.26 2.32
845 900 0.036765 TCGGCTGTAGCGACCAAAAT 60.037 50.000 0.00 0.00 43.26 1.82
866 926 2.941720 CAAGAGAGACTATTGGGCTTGC 59.058 50.000 0.00 0.00 30.21 4.01
926 986 5.843019 AGGGTTTAGAGAGTGAAAATGGA 57.157 39.130 0.00 0.00 0.00 3.41
1068 1128 4.541648 ACGGAGGATAGGGGCGCT 62.542 66.667 7.64 9.68 0.00 5.92
1071 1131 2.122989 TGGACGGAGGATAGGGGC 60.123 66.667 0.00 0.00 0.00 5.80
1095 1155 3.311110 GGGACGGTCCTGACAGCA 61.311 66.667 25.39 0.00 36.57 4.41
1350 1410 3.441290 ACGACCTTCCTCCTCGCG 61.441 66.667 0.00 0.00 0.00 5.87
1365 1425 3.316573 GACCTCTGCCCCTTCCACG 62.317 68.421 0.00 0.00 0.00 4.94
1410 1470 0.465705 TCTCGTCCTCCATCCAATGC 59.534 55.000 0.00 0.00 0.00 3.56
1486 1546 1.140134 CCCCTCCTCTTGTTCCCCAA 61.140 60.000 0.00 0.00 0.00 4.12
1614 1674 7.695618 GTGCATAATGACTTGATCAAGAAAGAC 59.304 37.037 36.15 21.63 41.93 3.01
1798 1860 6.127423 ACTCTATGACCGCAACATACTAAGTT 60.127 38.462 0.00 0.00 0.00 2.66
1799 1861 5.360144 ACTCTATGACCGCAACATACTAAGT 59.640 40.000 0.00 0.00 0.00 2.24
1804 1866 5.107453 GCATAACTCTATGACCGCAACATAC 60.107 44.000 0.00 0.00 37.68 2.39
1833 1895 6.479001 ACGGTATGAATTAGAAAACCTCATCG 59.521 38.462 0.00 0.00 0.00 3.84
2039 3418 0.469892 TGGAGAGTGCAGAGTGGTCA 60.470 55.000 0.00 0.00 0.00 4.02
2097 3476 0.531532 GATCCATCCAGCCTGTGTCG 60.532 60.000 0.00 0.00 0.00 4.35
2182 3561 1.374947 CCAGAGAACCCGCCTTGAA 59.625 57.895 0.00 0.00 0.00 2.69
2183 3562 3.068881 CCAGAGAACCCGCCTTGA 58.931 61.111 0.00 0.00 0.00 3.02
2309 3688 3.841379 CTTATCGCGGCCGCTGCTA 62.841 63.158 43.60 29.09 39.32 3.49
2313 3692 4.143333 ACACTTATCGCGGCCGCT 62.143 61.111 43.60 30.70 39.32 5.52
2324 3703 3.682858 GCTTTCCACAATAGCGACACTTA 59.317 43.478 0.00 0.00 0.00 2.24
2532 3912 0.892755 TTTCCTACCGCGATGACTGT 59.107 50.000 8.23 0.00 0.00 3.55
2697 4077 4.415150 CGTCACCAGGGGCATGCT 62.415 66.667 18.92 0.00 0.00 3.79
2738 4118 3.004315 GTCATTTGGTTTGACACACCGAT 59.996 43.478 6.30 0.68 42.43 4.18
2739 4119 2.356382 GTCATTTGGTTTGACACACCGA 59.644 45.455 6.30 1.33 42.43 4.69
2783 4163 2.573462 ACCATACTGCTTCATGTGGTCT 59.427 45.455 0.00 0.00 35.12 3.85
2795 4175 1.439353 CGTGCCCATCACCATACTGC 61.439 60.000 0.00 0.00 42.69 4.40
2836 4216 1.965414 TGTCCACATACCTCCACCAT 58.035 50.000 0.00 0.00 0.00 3.55
2893 4273 4.858140 TCGATACACGTTCTTTAATTCGCA 59.142 37.500 0.00 0.00 43.13 5.10
3022 4410 0.111639 GGGGACACTTTACCTTGGCA 59.888 55.000 0.00 0.00 0.00 4.92
3062 4450 2.043526 AGCTTCCCCATTGGTCAAAGAT 59.956 45.455 1.20 0.00 34.77 2.40
3112 4500 1.542472 CATGTGAAGGATGTGCTTGCA 59.458 47.619 0.00 0.00 0.00 4.08
3128 4516 6.406692 AGTACTTACTTGACTGTGACATGT 57.593 37.500 0.00 0.00 31.13 3.21
3156 4544 4.954118 TCCTCGGGTGTGCTGGGT 62.954 66.667 0.00 0.00 0.00 4.51
3181 4569 1.077285 TGGTCCTCCGCGACATCTA 60.077 57.895 8.23 0.00 34.24 1.98
3223 4611 1.899814 ACAACGTTCTGCCAGGAGATA 59.100 47.619 0.00 0.00 0.00 1.98
3225 4613 0.033504 GACAACGTTCTGCCAGGAGA 59.966 55.000 0.00 0.00 0.00 3.71
3226 4614 0.249868 TGACAACGTTCTGCCAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
3290 6834 1.263217 GCGAAACCGATCAACAACAGT 59.737 47.619 0.00 0.00 0.00 3.55
3380 6926 2.325082 CGAAAGGGTTGCCGTGGAG 61.325 63.158 0.00 0.00 0.00 3.86
3403 6949 5.301045 TCGAGGTCTACCATATTAACCAGTG 59.699 44.000 1.26 0.00 38.89 3.66
3590 7136 2.356793 GCTCTCCATCATCCGGCG 60.357 66.667 0.00 0.00 0.00 6.46
3631 7177 2.575461 GGCGTGTAGTTAGGCCGT 59.425 61.111 0.00 0.00 41.18 5.68
3666 7212 3.119029 CCACGCATTTTTCCTCAATGGAT 60.119 43.478 0.00 0.00 45.68 3.41
3681 7227 0.745845 GTCAATGAGGAGCCACGCAT 60.746 55.000 0.00 0.00 0.00 4.73
3682 7228 1.375908 GTCAATGAGGAGCCACGCA 60.376 57.895 0.00 0.00 0.00 5.24
3697 7243 1.573108 CAAGGCTAGAAGGGAGGTCA 58.427 55.000 0.00 0.00 0.00 4.02
3796 7342 3.201266 TCTTGACCTTGTACACCCACTTT 59.799 43.478 0.00 0.00 0.00 2.66
3818 7364 2.107903 ACCGCACCGTTTTCGTGTT 61.108 52.632 0.00 0.00 42.35 3.32
3909 7456 2.867855 AAGACGAGCGACAAGGGCA 61.868 57.895 0.00 0.00 0.00 5.36
3927 7474 1.785041 GCAAAAGCCGCACAGACTCA 61.785 55.000 0.00 0.00 0.00 3.41
3970 7517 4.341502 CTTTTGGTGCACGCCCCG 62.342 66.667 11.45 0.00 0.00 5.73
4047 7595 0.179040 TCCGAAAATGGCGTATCCCC 60.179 55.000 0.00 0.00 0.00 4.81
4134 7682 3.287312 ACGGACACGATCGAACTTTTA 57.713 42.857 24.34 0.00 44.60 1.52
4162 7710 2.383527 GGTGCTCCGCTCGAAACAG 61.384 63.158 0.00 0.00 0.00 3.16
4208 7756 2.591429 CAAGACGTGGTGCTGCCA 60.591 61.111 0.00 0.00 46.95 4.92
4224 7772 0.678366 ACGGACACCACAAGCAAACA 60.678 50.000 0.00 0.00 0.00 2.83
4227 7775 1.078072 ACACGGACACCACAAGCAA 60.078 52.632 0.00 0.00 0.00 3.91
4241 7789 2.725759 CGTTGAAGCCAATGATGACACG 60.726 50.000 0.00 0.00 40.79 4.49
4339 7892 0.824109 CCTTAGCACACCTCGATCCA 59.176 55.000 0.00 0.00 0.00 3.41
4356 7909 4.019321 TCCATTCGAACAAGAAGATTCCCT 60.019 41.667 0.00 0.00 33.19 4.20
4357 7910 4.261801 TCCATTCGAACAAGAAGATTCCC 58.738 43.478 0.00 0.00 33.19 3.97
4358 7911 5.643777 TCTTCCATTCGAACAAGAAGATTCC 59.356 40.000 22.68 0.00 38.36 3.01
4359 7912 6.727824 TCTTCCATTCGAACAAGAAGATTC 57.272 37.500 22.68 0.00 38.36 2.52
4362 7915 7.510549 AAAATCTTCCATTCGAACAAGAAGA 57.489 32.000 26.01 26.01 44.99 2.87
4363 7916 6.521133 CGAAAATCTTCCATTCGAACAAGAAG 59.479 38.462 19.95 19.95 46.50 2.85
4364 7917 6.370593 CGAAAATCTTCCATTCGAACAAGAA 58.629 36.000 16.04 11.34 46.50 2.52
4365 7918 5.927030 CGAAAATCTTCCATTCGAACAAGA 58.073 37.500 14.96 14.96 46.50 3.02
4372 7925 5.447818 CCCTCTTTCGAAAATCTTCCATTCG 60.448 44.000 12.41 1.03 45.32 3.34
4373 7926 5.163612 CCCCTCTTTCGAAAATCTTCCATTC 60.164 44.000 12.41 0.00 0.00 2.67
4374 7927 4.706962 CCCCTCTTTCGAAAATCTTCCATT 59.293 41.667 12.41 0.00 0.00 3.16
4375 7928 4.018415 TCCCCTCTTTCGAAAATCTTCCAT 60.018 41.667 12.41 0.00 0.00 3.41
4376 7929 3.329520 TCCCCTCTTTCGAAAATCTTCCA 59.670 43.478 12.41 0.00 0.00 3.53
4377 7930 3.942115 CTCCCCTCTTTCGAAAATCTTCC 59.058 47.826 12.41 0.00 0.00 3.46
4378 7931 4.833390 TCTCCCCTCTTTCGAAAATCTTC 58.167 43.478 12.41 0.00 0.00 2.87
4379 7932 4.910458 TCTCCCCTCTTTCGAAAATCTT 57.090 40.909 12.41 0.00 0.00 2.40
4380 7933 4.910458 TTCTCCCCTCTTTCGAAAATCT 57.090 40.909 12.41 0.00 0.00 2.40
4381 7934 5.648092 TGATTTCTCCCCTCTTTCGAAAATC 59.352 40.000 12.41 8.24 0.00 2.17
4382 7935 5.570320 TGATTTCTCCCCTCTTTCGAAAAT 58.430 37.500 12.41 0.00 0.00 1.82
4383 7936 4.980573 TGATTTCTCCCCTCTTTCGAAAA 58.019 39.130 12.41 2.66 0.00 2.29
4384 7937 4.634012 TGATTTCTCCCCTCTTTCGAAA 57.366 40.909 10.71 10.71 0.00 3.46
4385 7938 4.634012 TTGATTTCTCCCCTCTTTCGAA 57.366 40.909 0.00 0.00 0.00 3.71
4386 7939 4.225042 TGATTGATTTCTCCCCTCTTTCGA 59.775 41.667 0.00 0.00 0.00 3.71
4387 7940 4.333926 GTGATTGATTTCTCCCCTCTTTCG 59.666 45.833 0.00 0.00 0.00 3.46
4388 7941 5.256474 TGTGATTGATTTCTCCCCTCTTTC 58.744 41.667 0.00 0.00 0.00 2.62
4389 7942 5.261040 TGTGATTGATTTCTCCCCTCTTT 57.739 39.130 0.00 0.00 0.00 2.52
4390 7943 4.934797 TGTGATTGATTTCTCCCCTCTT 57.065 40.909 0.00 0.00 0.00 2.85
4391 7944 4.789807 CATGTGATTGATTTCTCCCCTCT 58.210 43.478 0.00 0.00 0.00 3.69
4392 7945 3.317430 GCATGTGATTGATTTCTCCCCTC 59.683 47.826 0.00 0.00 0.00 4.30
4393 7946 3.294214 GCATGTGATTGATTTCTCCCCT 58.706 45.455 0.00 0.00 0.00 4.79
4394 7947 2.033801 CGCATGTGATTGATTTCTCCCC 59.966 50.000 0.00 0.00 0.00 4.81
4395 7948 2.684881 ACGCATGTGATTGATTTCTCCC 59.315 45.455 14.43 0.00 0.00 4.30
4409 7962 0.179127 CTCGATCCACTCACGCATGT 60.179 55.000 0.00 0.00 0.00 3.21
4410 7963 1.485838 GCTCGATCCACTCACGCATG 61.486 60.000 0.00 0.00 0.00 4.06
4411 7964 1.227089 GCTCGATCCACTCACGCAT 60.227 57.895 0.00 0.00 0.00 4.73
4412 7965 1.029947 TAGCTCGATCCACTCACGCA 61.030 55.000 0.00 0.00 0.00 5.24
4413 7966 0.312416 ATAGCTCGATCCACTCACGC 59.688 55.000 0.00 0.00 0.00 5.34
4414 7967 2.783828 AATAGCTCGATCCACTCACG 57.216 50.000 0.00 0.00 0.00 4.35
4424 7977 9.941664 GCCGTTACTTATTATATAATAGCTCGA 57.058 33.333 13.55 0.83 30.57 4.04
4425 7978 9.947669 AGCCGTTACTTATTATATAATAGCTCG 57.052 33.333 13.55 13.72 30.57 5.03
4447 8000 8.804358 ATCTACCAAGAATAGCTTTTTCAGCCG 61.804 40.741 10.62 0.00 41.86 5.52
4448 8001 6.319911 ATCTACCAAGAATAGCTTTTTCAGCC 59.680 38.462 10.62 0.00 41.86 4.85
4449 8002 7.326968 ATCTACCAAGAATAGCTTTTTCAGC 57.673 36.000 10.62 0.00 41.48 4.26
4450 8003 7.554118 TGGATCTACCAAGAATAGCTTTTTCAG 59.446 37.037 10.62 4.18 46.75 3.02
4451 8004 7.402054 TGGATCTACCAAGAATAGCTTTTTCA 58.598 34.615 10.62 0.00 46.75 2.69
4452 8005 7.865706 TGGATCTACCAAGAATAGCTTTTTC 57.134 36.000 0.00 0.00 46.75 2.29
4467 8020 2.633488 GCCTTGACAAGTGGATCTACC 58.367 52.381 14.03 0.00 39.54 3.18
4468 8021 2.271800 CGCCTTGACAAGTGGATCTAC 58.728 52.381 14.03 0.00 0.00 2.59
4469 8022 1.405526 GCGCCTTGACAAGTGGATCTA 60.406 52.381 14.03 0.00 0.00 1.98
4470 8023 0.674895 GCGCCTTGACAAGTGGATCT 60.675 55.000 14.03 0.00 0.00 2.75
4471 8024 1.796796 GCGCCTTGACAAGTGGATC 59.203 57.895 14.03 0.00 0.00 3.36
4472 8025 2.034879 CGCGCCTTGACAAGTGGAT 61.035 57.895 14.03 0.00 0.00 3.41
4473 8026 2.664851 CGCGCCTTGACAAGTGGA 60.665 61.111 14.03 0.00 0.00 4.02
4474 8027 3.726517 CCGCGCCTTGACAAGTGG 61.727 66.667 14.03 6.43 0.00 4.00
4475 8028 1.781025 TTTCCGCGCCTTGACAAGTG 61.781 55.000 14.03 7.29 0.00 3.16
4476 8029 1.507141 CTTTCCGCGCCTTGACAAGT 61.507 55.000 14.03 0.00 0.00 3.16
4477 8030 1.207593 CTTTCCGCGCCTTGACAAG 59.792 57.895 8.31 8.31 0.00 3.16
4478 8031 2.903547 GCTTTCCGCGCCTTGACAA 61.904 57.895 0.00 0.00 0.00 3.18
4479 8032 3.353836 GCTTTCCGCGCCTTGACA 61.354 61.111 0.00 0.00 0.00 3.58
4480 8033 4.103103 GGCTTTCCGCGCCTTGAC 62.103 66.667 0.00 0.00 44.17 3.18
4490 8043 1.157585 GAGAAGGAACACGGCTTTCC 58.842 55.000 4.26 4.26 42.68 3.13
4491 8044 1.801178 CTGAGAAGGAACACGGCTTTC 59.199 52.381 0.00 0.00 0.00 2.62
4492 8045 1.884235 CTGAGAAGGAACACGGCTTT 58.116 50.000 0.00 0.00 0.00 3.51
4493 8046 0.603975 GCTGAGAAGGAACACGGCTT 60.604 55.000 0.00 0.00 31.86 4.35
4494 8047 1.004440 GCTGAGAAGGAACACGGCT 60.004 57.895 0.00 0.00 31.86 5.52
4495 8048 1.004440 AGCTGAGAAGGAACACGGC 60.004 57.895 0.00 0.00 34.04 5.68
4496 8049 0.318441 TGAGCTGAGAAGGAACACGG 59.682 55.000 0.00 0.00 0.00 4.94
4497 8050 1.423395 GTGAGCTGAGAAGGAACACG 58.577 55.000 0.00 0.00 0.00 4.49
4498 8051 1.423395 CGTGAGCTGAGAAGGAACAC 58.577 55.000 0.00 0.00 0.00 3.32
4499 8052 3.894257 CGTGAGCTGAGAAGGAACA 57.106 52.632 0.00 0.00 0.00 3.18
4512 8065 4.154737 TCAAATCAATCAGGAAAGCGTGAG 59.845 41.667 0.00 0.00 41.64 3.51
4513 8066 4.071423 TCAAATCAATCAGGAAAGCGTGA 58.929 39.130 0.00 0.00 42.43 4.35
4514 8067 4.424061 TCAAATCAATCAGGAAAGCGTG 57.576 40.909 0.00 0.00 0.00 5.34
4515 8068 5.241506 TCTTTCAAATCAATCAGGAAAGCGT 59.758 36.000 0.00 0.00 42.43 5.07
4516 8069 5.570589 GTCTTTCAAATCAATCAGGAAAGCG 59.429 40.000 0.00 0.00 42.43 4.68
4517 8070 5.866092 GGTCTTTCAAATCAATCAGGAAAGC 59.134 40.000 0.00 0.00 42.43 3.51
4518 8071 6.210185 AGGGTCTTTCAAATCAATCAGGAAAG 59.790 38.462 0.00 0.00 43.47 2.62
4519 8072 6.077322 AGGGTCTTTCAAATCAATCAGGAAA 58.923 36.000 0.00 0.00 0.00 3.13
4520 8073 5.644188 AGGGTCTTTCAAATCAATCAGGAA 58.356 37.500 0.00 0.00 0.00 3.36
4521 8074 5.261040 AGGGTCTTTCAAATCAATCAGGA 57.739 39.130 0.00 0.00 0.00 3.86
4522 8075 5.945784 TGTAGGGTCTTTCAAATCAATCAGG 59.054 40.000 0.00 0.00 0.00 3.86
4523 8076 6.430925 TGTGTAGGGTCTTTCAAATCAATCAG 59.569 38.462 0.00 0.00 0.00 2.90
4524 8077 6.206634 GTGTGTAGGGTCTTTCAAATCAATCA 59.793 38.462 0.00 0.00 0.00 2.57
4525 8078 6.349363 GGTGTGTAGGGTCTTTCAAATCAATC 60.349 42.308 0.00 0.00 0.00 2.67
4526 8079 5.476945 GGTGTGTAGGGTCTTTCAAATCAAT 59.523 40.000 0.00 0.00 0.00 2.57
4527 8080 4.825085 GGTGTGTAGGGTCTTTCAAATCAA 59.175 41.667 0.00 0.00 0.00 2.57
4528 8081 4.141367 TGGTGTGTAGGGTCTTTCAAATCA 60.141 41.667 0.00 0.00 0.00 2.57
4529 8082 4.394729 TGGTGTGTAGGGTCTTTCAAATC 58.605 43.478 0.00 0.00 0.00 2.17
4530 8083 4.141251 ACTGGTGTGTAGGGTCTTTCAAAT 60.141 41.667 0.00 0.00 0.00 2.32
4531 8084 3.201266 ACTGGTGTGTAGGGTCTTTCAAA 59.799 43.478 0.00 0.00 0.00 2.69
4532 8085 2.775384 ACTGGTGTGTAGGGTCTTTCAA 59.225 45.455 0.00 0.00 0.00 2.69
4533 8086 2.367567 GACTGGTGTGTAGGGTCTTTCA 59.632 50.000 0.00 0.00 0.00 2.69
4534 8087 2.289506 GGACTGGTGTGTAGGGTCTTTC 60.290 54.545 0.00 0.00 0.00 2.62
4535 8088 1.697982 GGACTGGTGTGTAGGGTCTTT 59.302 52.381 0.00 0.00 0.00 2.52
4536 8089 1.349067 GGACTGGTGTGTAGGGTCTT 58.651 55.000 0.00 0.00 0.00 3.01
4537 8090 0.544595 GGGACTGGTGTGTAGGGTCT 60.545 60.000 0.00 0.00 0.00 3.85
4538 8091 0.544595 AGGGACTGGTGTGTAGGGTC 60.545 60.000 0.00 0.00 37.18 4.46
4539 8092 0.544595 GAGGGACTGGTGTGTAGGGT 60.545 60.000 0.00 0.00 41.55 4.34
4540 8093 0.252284 AGAGGGACTGGTGTGTAGGG 60.252 60.000 0.00 0.00 41.55 3.53
4541 8094 1.645710 AAGAGGGACTGGTGTGTAGG 58.354 55.000 0.00 0.00 41.55 3.18
4542 8095 2.163815 CGTAAGAGGGACTGGTGTGTAG 59.836 54.545 0.00 0.00 41.55 2.74
4543 8096 2.165167 CGTAAGAGGGACTGGTGTGTA 58.835 52.381 0.00 0.00 41.55 2.90
4544 8097 0.966920 CGTAAGAGGGACTGGTGTGT 59.033 55.000 0.00 0.00 41.55 3.72
4545 8098 0.389948 GCGTAAGAGGGACTGGTGTG 60.390 60.000 0.00 0.00 41.55 3.82
4546 8099 1.542187 GGCGTAAGAGGGACTGGTGT 61.542 60.000 0.00 0.00 41.55 4.16
4547 8100 1.218316 GGCGTAAGAGGGACTGGTG 59.782 63.158 0.00 0.00 41.55 4.17
4548 8101 0.617820 ATGGCGTAAGAGGGACTGGT 60.618 55.000 0.00 0.00 41.55 4.00
4549 8102 0.105039 GATGGCGTAAGAGGGACTGG 59.895 60.000 0.00 0.00 41.55 4.00
4550 8103 0.249073 CGATGGCGTAAGAGGGACTG 60.249 60.000 0.00 0.00 41.55 3.51
4551 8104 1.392710 CCGATGGCGTAAGAGGGACT 61.393 60.000 0.00 0.00 43.02 3.85
4579 8322 0.607217 CAGTGCCTCCATGAAGCACA 60.607 55.000 26.08 3.64 44.26 4.57
4597 8340 1.962807 CAGCAAGATTTTGGGTGGTCA 59.037 47.619 0.00 0.00 34.79 4.02
4620 8363 2.203401 GCATAGCTCAGCACTCTTCAG 58.797 52.381 0.00 0.00 0.00 3.02
4932 8681 0.677731 CCATGACGAACCATGCCAGT 60.678 55.000 0.00 0.00 41.83 4.00
5070 8819 0.676151 CAACAGAGCAAGGAGGAGGC 60.676 60.000 0.00 0.00 0.00 4.70
5219 9545 2.484928 CGAGCCCTCAGATCAGCGA 61.485 63.158 0.00 0.00 0.00 4.93
5284 9629 4.803426 GACGACCCCTCGCTGCTG 62.803 72.222 0.00 0.00 44.33 4.41
5287 9632 4.135153 CTGGACGACCCCTCGCTG 62.135 72.222 0.34 0.00 44.33 5.18
5381 9726 2.746359 CCCGGCATCCCAGATCTC 59.254 66.667 0.00 0.00 0.00 2.75
5382 9727 2.851102 CCCCGGCATCCCAGATCT 60.851 66.667 0.00 0.00 0.00 2.75
5737 10097 0.313043 GACCGAAGACACCGTCAAGA 59.687 55.000 0.00 0.00 34.60 3.02
5824 10185 1.131126 CGATGGCGAAGAAATGCAACT 59.869 47.619 0.00 0.00 40.82 3.16
6220 10597 3.372822 CGCTATACCGAAAAAGGCTTTCA 59.627 43.478 13.76 0.00 33.69 2.69
6240 10617 1.076533 ACCGATCATGACGTTGTCGC 61.077 55.000 9.61 0.00 41.18 5.19
6241 10618 0.640262 CACCGATCATGACGTTGTCG 59.360 55.000 0.00 2.74 43.34 4.35
6242 10619 1.990799 TCACCGATCATGACGTTGTC 58.009 50.000 0.00 0.00 0.00 3.18
6243 10620 2.166459 AGATCACCGATCATGACGTTGT 59.834 45.455 0.00 0.00 41.12 3.32
6244 10621 2.814269 AGATCACCGATCATGACGTTG 58.186 47.619 0.00 3.24 41.12 4.10
6245 10622 3.119137 TCAAGATCACCGATCATGACGTT 60.119 43.478 0.00 0.00 40.35 3.99
6246 10623 2.427095 TCAAGATCACCGATCATGACGT 59.573 45.455 0.00 0.00 40.35 4.34
6247 10624 3.084070 TCAAGATCACCGATCATGACG 57.916 47.619 0.00 4.05 40.35 4.35
6282 10659 1.003118 TGGCATAGAAGAACGGTGCTT 59.997 47.619 0.00 0.00 35.36 3.91
6342 10730 1.587043 TTCGCACGAGGAGAGAGGTG 61.587 60.000 0.00 0.00 0.00 4.00
6343 10731 1.303398 TTCGCACGAGGAGAGAGGT 60.303 57.895 0.00 0.00 0.00 3.85
6448 10836 9.209175 GATTAGTTGTCAATGTAGAGTTGAACT 57.791 33.333 0.00 0.00 37.34 3.01
6625 11023 2.202946 TCCGCGAAGTGCAACACA 60.203 55.556 8.23 0.00 46.97 3.72
6629 11027 2.280797 AAGCTCCGCGAAGTGCAA 60.281 55.556 8.23 0.00 46.97 4.08
6693 11091 4.536765 GTTCATCCCAACAATATCACCCT 58.463 43.478 0.00 0.00 0.00 4.34
6712 11110 1.600916 GTGACAGGCCACAGGGTTC 60.601 63.158 5.01 0.00 37.04 3.62
6826 11224 3.574396 TCTCACAACTCGAGAATCACCTT 59.426 43.478 21.68 0.00 36.59 3.50
6837 11235 0.388520 TCGTGCCATCTCACAACTCG 60.389 55.000 0.00 0.00 36.80 4.18
6980 11379 3.738282 CAGAAAAGACCGAGAGTGAAGTG 59.262 47.826 0.00 0.00 0.00 3.16
6981 11380 3.385111 ACAGAAAAGACCGAGAGTGAAGT 59.615 43.478 0.00 0.00 0.00 3.01
7075 11474 4.279922 TCGAGGAAGACAATGACACAAGTA 59.720 41.667 0.00 0.00 0.00 2.24
7194 11600 2.313234 CAGCAAGAAAATGAGTGTGCG 58.687 47.619 0.00 0.00 37.09 5.34
7584 11994 0.991920 TTTGCCCCCTAACTGGAGAG 59.008 55.000 0.00 0.00 38.35 3.20
7617 12028 4.217550 CGTCTCCAGAAATCCTATCTCTCC 59.782 50.000 0.00 0.00 0.00 3.71
7719 12130 7.786046 TTTTGATACAGAGGGAGTAGTTACA 57.214 36.000 0.00 0.00 0.00 2.41
7734 12145 8.454894 TGCAAAAGCGTCTTATATTTTGATACA 58.545 29.630 12.10 0.42 42.48 2.29
7753 12164 9.362539 AGATATAAGATGTTTTTGCTGCAAAAG 57.637 29.630 31.59 0.00 42.91 2.27
8117 12849 8.289618 TGCAATCTTGTGTAGTTATTCTTGTTC 58.710 33.333 0.00 0.00 0.00 3.18
8120 12852 7.269084 CGTTGCAATCTTGTGTAGTTATTCTTG 59.731 37.037 0.59 0.00 0.00 3.02
8125 12857 6.348213 GGTTCGTTGCAATCTTGTGTAGTTAT 60.348 38.462 0.59 0.00 0.00 1.89
8179 12911 6.039941 ACACGACCATGTTTTTCCATCTTAAA 59.960 34.615 0.00 0.00 0.00 1.52
8180 12912 5.533154 ACACGACCATGTTTTTCCATCTTAA 59.467 36.000 0.00 0.00 0.00 1.85
8181 12913 5.049060 CACACGACCATGTTTTTCCATCTTA 60.049 40.000 0.00 0.00 0.00 2.10
8182 12914 3.888930 ACACGACCATGTTTTTCCATCTT 59.111 39.130 0.00 0.00 0.00 2.40
8212 12944 7.389607 TGTTTTTCTTTTAGTCCTATCCTTCGG 59.610 37.037 0.00 0.00 0.00 4.30
8214 12946 9.286170 AGTGTTTTTCTTTTAGTCCTATCCTTC 57.714 33.333 0.00 0.00 0.00 3.46
8477 13209 0.833409 TGCTCTCTCAGGTTGAGGCA 60.833 55.000 6.27 5.54 44.39 4.75
8636 13369 5.871524 GCATGAGAGACTGAAATCACTACAA 59.128 40.000 0.00 0.00 0.00 2.41
8774 13509 2.204461 TTCGTCCGGAGCACAGGAA 61.204 57.895 3.06 0.00 41.56 3.36
8805 13540 0.250234 CTGAGGTTGGATCGGAGCAA 59.750 55.000 0.00 0.00 0.00 3.91
8822 13557 3.891422 TTTTAATCCAATGGCTGGCTG 57.109 42.857 2.00 0.00 45.98 4.85
8823 13558 4.095946 TCTTTTTAATCCAATGGCTGGCT 58.904 39.130 2.00 0.00 45.98 4.75
8824 13559 4.160252 TCTCTTTTTAATCCAATGGCTGGC 59.840 41.667 0.00 0.00 45.98 4.85
8861 13596 2.532715 TTCAGCTCCCCTTGCCCT 60.533 61.111 0.00 0.00 0.00 5.19
8894 13629 2.110213 TGGTGCACCAGTTCGTCC 59.890 61.111 34.74 5.79 42.01 4.79
8947 13686 0.539986 GACAGGGCGGGACAGAATTA 59.460 55.000 0.00 0.00 0.00 1.40
8977 13716 2.164624 ACGTGAGAAGACAGGCATACTC 59.835 50.000 0.00 0.00 0.00 2.59
8978 13717 2.094494 CACGTGAGAAGACAGGCATACT 60.094 50.000 10.90 0.00 0.00 2.12
8979 13718 2.263077 CACGTGAGAAGACAGGCATAC 58.737 52.381 10.90 0.00 0.00 2.39
8980 13719 1.893137 ACACGTGAGAAGACAGGCATA 59.107 47.619 25.01 0.00 0.00 3.14
9320 14917 4.220693 TCACGTGAATCCATCCATCTTT 57.779 40.909 17.62 0.00 0.00 2.52
9321 14918 3.912496 TCACGTGAATCCATCCATCTT 57.088 42.857 17.62 0.00 0.00 2.40
9322 14919 4.559502 CGTATCACGTGAATCCATCCATCT 60.560 45.833 24.13 3.58 36.74 2.90
9324 14921 3.320826 TCGTATCACGTGAATCCATCCAT 59.679 43.478 24.13 4.95 43.14 3.41
9325 14922 2.691011 TCGTATCACGTGAATCCATCCA 59.309 45.455 24.13 0.00 43.14 3.41
9327 14924 3.966154 AGTCGTATCACGTGAATCCATC 58.034 45.455 24.13 11.48 43.14 3.51
9328 14925 5.707242 ATAGTCGTATCACGTGAATCCAT 57.293 39.130 24.13 8.19 43.14 3.41
9331 14928 7.903452 TGTTTATAGTCGTATCACGTGAATC 57.097 36.000 24.13 16.65 43.14 2.52
9333 14930 7.083230 TGTTGTTTATAGTCGTATCACGTGAA 58.917 34.615 24.13 9.30 43.14 3.18
9334 14931 6.610456 TGTTGTTTATAGTCGTATCACGTGA 58.390 36.000 22.48 22.48 43.14 4.35
9335 14932 6.525628 ACTGTTGTTTATAGTCGTATCACGTG 59.474 38.462 9.94 9.94 43.14 4.49
9337 14934 7.134612 GACTGTTGTTTATAGTCGTATCACG 57.865 40.000 0.00 0.00 44.19 4.35
9363 14994 4.357918 ACCATCCTTCGATTCCCAATAG 57.642 45.455 0.00 0.00 0.00 1.73
9385 15016 2.584391 GGCGAAGAGACACCCAGGT 61.584 63.158 0.00 0.00 0.00 4.00
9424 15055 2.631160 TCAGGAACTTCTTTGGCGAA 57.369 45.000 0.00 0.00 34.60 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.