Multiple sequence alignment - TraesCS7D01G272800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G272800 chr7D 100.000 2417 0 0 1 2417 263449433 263451849 0.000000e+00 4464.0
1 TraesCS7D01G272800 chr7D 91.566 249 21 0 1928 2176 540534310 540534062 6.400000e-91 344.0
2 TraesCS7D01G272800 chr7A 94.421 1165 50 5 764 1917 286148915 286150075 0.000000e+00 1777.0
3 TraesCS7D01G272800 chr7A 87.892 446 43 9 330 769 286148448 286148888 4.610000e-142 514.0
4 TraesCS7D01G272800 chr7A 94.958 119 6 0 2240 2358 286150073 286150191 1.140000e-43 187.0
5 TraesCS7D01G272800 chr7A 90.476 63 5 1 330 391 286119424 286119486 5.540000e-12 82.4
6 TraesCS7D01G272800 chr7A 91.667 60 2 1 2175 2234 669633440 669633496 1.990000e-11 80.5
7 TraesCS7D01G272800 chr7A 94.286 35 2 0 2361 2395 286150210 286150244 1.000000e-03 54.7
8 TraesCS7D01G272800 chr7B 93.266 995 41 12 766 1757 242910469 242911440 0.000000e+00 1443.0
9 TraesCS7D01G272800 chr7B 89.500 400 36 4 376 772 242910047 242910443 3.590000e-138 501.0
10 TraesCS7D01G272800 chr7B 93.007 143 4 2 1777 1918 242911427 242911564 1.130000e-48 204.0
11 TraesCS7D01G272800 chr7B 90.756 119 8 1 2240 2358 242911564 242911679 3.220000e-34 156.0
12 TraesCS7D01G272800 chr7B 97.368 38 1 0 2358 2395 242911695 242911732 5.580000e-07 65.8
13 TraesCS7D01G272800 chr7B 97.059 34 1 0 236 269 465952842 465952809 9.330000e-05 58.4
14 TraesCS7D01G272800 chr2D 92.683 246 18 0 1936 2181 155616534 155616779 2.960000e-94 355.0
15 TraesCS7D01G272800 chr2D 90.800 250 22 1 1936 2185 108341081 108341329 1.380000e-87 333.0
16 TraesCS7D01G272800 chr6A 92.562 242 18 0 1936 2177 199396889 199396648 4.950000e-92 348.0
17 TraesCS7D01G272800 chr5B 92.469 239 18 0 1932 2170 180025162 180025400 2.300000e-90 342.0
18 TraesCS7D01G272800 chr5B 86.486 74 7 1 2175 2248 630135993 630135923 7.160000e-11 78.7
19 TraesCS7D01G272800 chr6D 91.770 243 20 0 1935 2177 38212750 38212992 2.980000e-89 339.0
20 TraesCS7D01G272800 chr6D 84.722 72 7 4 202 269 386531234 386531305 4.310000e-08 69.4
21 TraesCS7D01G272800 chr6D 94.872 39 1 1 235 273 97669130 97669093 2.600000e-05 60.2
22 TraesCS7D01G272800 chr5A 92.766 235 16 1 1936 2170 427200819 427201052 2.980000e-89 339.0
23 TraesCS7D01G272800 chr5A 91.736 242 20 0 1936 2177 536150054 536150295 1.070000e-88 337.0
24 TraesCS7D01G272800 chr1A 90.625 256 23 1 1922 2176 554562181 554562436 2.980000e-89 339.0
25 TraesCS7D01G272800 chr4D 80.408 245 34 10 35 269 132127524 132127764 8.880000e-40 174.0
26 TraesCS7D01G272800 chr4D 87.838 74 5 3 2169 2241 252173774 252173704 1.540000e-12 84.2
27 TraesCS7D01G272800 chr4D 87.302 63 5 2 2179 2241 220349221 220349162 4.310000e-08 69.4
28 TraesCS7D01G272800 chr4B 79.681 251 37 12 35 275 166005181 166004935 4.130000e-38 169.0
29 TraesCS7D01G272800 chr4B 87.838 74 5 3 2169 2241 315721118 315721188 1.540000e-12 84.2
30 TraesCS7D01G272800 chr1D 91.139 79 2 5 2169 2246 406665049 406664975 4.250000e-18 102.0
31 TraesCS7D01G272800 chr1D 81.818 77 9 3 202 273 220060172 220060248 2.600000e-05 60.2
32 TraesCS7D01G272800 chr4A 87.838 74 5 3 2169 2241 387086473 387086543 1.540000e-12 84.2
33 TraesCS7D01G272800 chr3A 89.552 67 4 1 2175 2241 151000097 151000160 5.540000e-12 82.4
34 TraesCS7D01G272800 chr3B 88.889 63 7 0 2175 2237 254943921 254943859 7.160000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G272800 chr7D 263449433 263451849 2416 False 4464.000 4464 100.00000 1 2417 1 chr7D.!!$F1 2416
1 TraesCS7D01G272800 chr7A 286148448 286150244 1796 False 633.175 1777 92.88925 330 2395 4 chr7A.!!$F3 2065
2 TraesCS7D01G272800 chr7B 242910047 242911732 1685 False 473.960 1443 92.77940 376 2395 5 chr7B.!!$F1 2019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.037232 GGAAGGTGGAGTTCACGGAG 60.037 60.0 0.0 0.0 46.96 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2011 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.0 0.0 0.0 42.26 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.899239 CAGCGCCTCCGGACCATC 62.899 72.222 2.29 0.00 34.32 3.51
61 62 4.162690 GCGCCTCCGGACCATCTT 62.163 66.667 0.00 0.00 34.32 2.40
62 63 2.107141 CGCCTCCGGACCATCTTC 59.893 66.667 0.00 0.00 0.00 2.87
63 64 2.107141 GCCTCCGGACCATCTTCG 59.893 66.667 0.00 0.00 0.00 3.79
64 65 2.815308 CCTCCGGACCATCTTCGG 59.185 66.667 0.00 0.00 44.59 4.30
66 67 3.935024 TCCGGACCATCTTCGGAG 58.065 61.111 0.00 0.00 46.48 4.63
67 68 2.107141 CCGGACCATCTTCGGAGC 59.893 66.667 0.00 0.00 45.96 4.70
68 69 2.721167 CCGGACCATCTTCGGAGCA 61.721 63.158 0.00 0.00 45.96 4.26
69 70 1.519455 CGGACCATCTTCGGAGCAC 60.519 63.158 0.00 0.00 0.00 4.40
70 71 1.519455 GGACCATCTTCGGAGCACG 60.519 63.158 0.00 0.00 46.11 5.34
80 81 4.459089 GGAGCACGAGGACAGGCC 62.459 72.222 0.00 0.00 0.00 5.19
81 82 4.803426 GAGCACGAGGACAGGCCG 62.803 72.222 0.00 0.00 43.43 6.13
83 84 4.803426 GCACGAGGACAGGCCGAG 62.803 72.222 0.00 0.00 43.43 4.63
84 85 4.135153 CACGAGGACAGGCCGAGG 62.135 72.222 0.00 0.00 43.43 4.63
125 126 3.781307 CGATGGGCGGAAGGTGGA 61.781 66.667 0.00 0.00 36.03 4.02
126 127 2.190578 GATGGGCGGAAGGTGGAG 59.809 66.667 0.00 0.00 0.00 3.86
127 128 2.610859 ATGGGCGGAAGGTGGAGT 60.611 61.111 0.00 0.00 0.00 3.85
128 129 2.198304 GATGGGCGGAAGGTGGAGTT 62.198 60.000 0.00 0.00 0.00 3.01
129 130 2.046217 GGGCGGAAGGTGGAGTTC 60.046 66.667 0.00 0.00 0.00 3.01
130 131 2.747686 GGCGGAAGGTGGAGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
131 132 1.671379 GGCGGAAGGTGGAGTTCAC 60.671 63.158 0.00 0.00 45.34 3.18
132 133 2.027625 GCGGAAGGTGGAGTTCACG 61.028 63.158 0.00 0.00 46.96 4.35
133 134 1.374252 CGGAAGGTGGAGTTCACGG 60.374 63.158 0.00 0.00 46.96 4.94
134 135 1.812686 CGGAAGGTGGAGTTCACGGA 61.813 60.000 0.00 0.00 46.96 4.69
135 136 0.037232 GGAAGGTGGAGTTCACGGAG 60.037 60.000 0.00 0.00 46.96 4.63
136 137 0.670854 GAAGGTGGAGTTCACGGAGC 60.671 60.000 0.00 0.00 46.96 4.70
137 138 1.407656 AAGGTGGAGTTCACGGAGCA 61.408 55.000 0.00 0.00 46.96 4.26
138 139 1.374758 GGTGGAGTTCACGGAGCAG 60.375 63.158 0.00 0.00 46.96 4.24
139 140 1.374758 GTGGAGTTCACGGAGCAGG 60.375 63.158 0.00 0.00 36.56 4.85
140 141 2.266055 GGAGTTCACGGAGCAGGG 59.734 66.667 0.00 0.00 0.00 4.45
141 142 2.283529 GGAGTTCACGGAGCAGGGA 61.284 63.158 0.00 0.00 0.00 4.20
142 143 1.079750 GAGTTCACGGAGCAGGGAC 60.080 63.158 0.00 0.00 0.00 4.46
143 144 1.534235 AGTTCACGGAGCAGGGACT 60.534 57.895 0.00 0.00 43.88 3.85
144 145 1.122019 AGTTCACGGAGCAGGGACTT 61.122 55.000 0.00 0.00 34.60 3.01
145 146 0.951040 GTTCACGGAGCAGGGACTTG 60.951 60.000 0.00 0.00 34.60 3.16
146 147 2.731691 TTCACGGAGCAGGGACTTGC 62.732 60.000 0.00 0.00 34.60 4.01
147 148 4.021925 ACGGAGCAGGGACTTGCC 62.022 66.667 2.59 0.00 34.60 4.52
153 154 3.136123 CAGGGACTTGCCGCCATG 61.136 66.667 0.00 0.00 34.60 3.66
166 167 4.170062 CCATGCGAGCAGGCGTTG 62.170 66.667 4.01 0.00 35.06 4.10
167 168 4.170062 CATGCGAGCAGGCGTTGG 62.170 66.667 3.58 0.00 35.06 3.77
168 169 4.393155 ATGCGAGCAGGCGTTGGA 62.393 61.111 3.58 0.00 35.06 3.53
175 176 4.760047 CAGGCGTTGGACGGGAGG 62.760 72.222 2.48 0.00 42.82 4.30
179 180 4.760047 CGTTGGACGGGAGGCAGG 62.760 72.222 0.00 0.00 42.53 4.85
197 198 4.323477 CGGCTGGGGAACGGAACA 62.323 66.667 0.00 0.00 0.00 3.18
198 199 2.359975 GGCTGGGGAACGGAACAG 60.360 66.667 0.00 0.00 0.00 3.16
199 200 2.359975 GCTGGGGAACGGAACAGG 60.360 66.667 0.00 0.00 0.00 4.00
200 201 2.359975 CTGGGGAACGGAACAGGC 60.360 66.667 0.00 0.00 0.00 4.85
201 202 4.323477 TGGGGAACGGAACAGGCG 62.323 66.667 0.00 0.00 0.00 5.52
203 204 4.324991 GGGAACGGAACAGGCGGT 62.325 66.667 0.00 0.00 0.00 5.68
204 205 3.047877 GGAACGGAACAGGCGGTG 61.048 66.667 0.00 0.00 0.00 4.94
205 206 3.047877 GAACGGAACAGGCGGTGG 61.048 66.667 0.00 0.00 0.00 4.61
231 232 2.662596 GTCGGAGTGACCATGGCA 59.337 61.111 13.04 8.31 42.04 4.92
232 233 1.448540 GTCGGAGTGACCATGGCAG 60.449 63.158 13.04 0.00 42.04 4.85
233 234 1.609210 TCGGAGTGACCATGGCAGA 60.609 57.895 13.04 0.00 38.90 4.26
234 235 1.153489 CGGAGTGACCATGGCAGAG 60.153 63.158 13.04 0.00 38.90 3.35
235 236 1.222936 GGAGTGACCATGGCAGAGG 59.777 63.158 13.04 7.18 38.79 3.69
236 237 1.222936 GAGTGACCATGGCAGAGGG 59.777 63.158 13.04 7.31 0.00 4.30
237 238 1.539869 AGTGACCATGGCAGAGGGT 60.540 57.895 13.04 10.37 43.17 4.34
238 239 1.136329 AGTGACCATGGCAGAGGGTT 61.136 55.000 13.04 0.00 39.48 4.11
239 240 0.962356 GTGACCATGGCAGAGGGTTG 60.962 60.000 13.04 0.00 39.48 3.77
240 241 1.133181 TGACCATGGCAGAGGGTTGA 61.133 55.000 13.04 0.42 39.48 3.18
241 242 0.678048 GACCATGGCAGAGGGTTGAC 60.678 60.000 13.04 0.00 39.48 3.18
242 243 1.746615 CCATGGCAGAGGGTTGACG 60.747 63.158 0.00 0.00 0.00 4.35
243 244 2.045926 ATGGCAGAGGGTTGACGC 60.046 61.111 0.00 0.00 0.00 5.19
244 245 3.628646 ATGGCAGAGGGTTGACGCC 62.629 63.158 0.00 0.00 43.28 5.68
282 283 3.889692 CGGGTGGGGGATGGGATG 61.890 72.222 0.00 0.00 0.00 3.51
283 284 3.511610 GGGTGGGGGATGGGATGG 61.512 72.222 0.00 0.00 0.00 3.51
284 285 2.699938 GGTGGGGGATGGGATGGT 60.700 66.667 0.00 0.00 0.00 3.55
285 286 2.603008 GTGGGGGATGGGATGGTG 59.397 66.667 0.00 0.00 0.00 4.17
286 287 2.699554 TGGGGGATGGGATGGTGG 60.700 66.667 0.00 0.00 0.00 4.61
287 288 3.511610 GGGGGATGGGATGGTGGG 61.512 72.222 0.00 0.00 0.00 4.61
288 289 3.511610 GGGGATGGGATGGTGGGG 61.512 72.222 0.00 0.00 0.00 4.96
289 290 2.699938 GGGATGGGATGGTGGGGT 60.700 66.667 0.00 0.00 0.00 4.95
290 291 2.603008 GGATGGGATGGTGGGGTG 59.397 66.667 0.00 0.00 0.00 4.61
291 292 2.603008 GATGGGATGGTGGGGTGG 59.397 66.667 0.00 0.00 0.00 4.61
292 293 3.738745 GATGGGATGGTGGGGTGGC 62.739 68.421 0.00 0.00 0.00 5.01
294 295 4.129148 GGGATGGTGGGGTGGCTC 62.129 72.222 0.00 0.00 0.00 4.70
295 296 3.017581 GGATGGTGGGGTGGCTCT 61.018 66.667 0.00 0.00 0.00 4.09
296 297 2.592308 GATGGTGGGGTGGCTCTC 59.408 66.667 0.00 0.00 0.00 3.20
297 298 1.997874 GATGGTGGGGTGGCTCTCT 60.998 63.158 0.00 0.00 0.00 3.10
298 299 1.977293 GATGGTGGGGTGGCTCTCTC 61.977 65.000 0.00 0.00 0.00 3.20
299 300 3.775654 GGTGGGGTGGCTCTCTCG 61.776 72.222 0.00 0.00 0.00 4.04
300 301 3.775654 GTGGGGTGGCTCTCTCGG 61.776 72.222 0.00 0.00 0.00 4.63
303 304 2.442272 GGGTGGCTCTCTCGGCTA 60.442 66.667 0.00 0.00 0.00 3.93
304 305 1.834822 GGGTGGCTCTCTCGGCTAT 60.835 63.158 0.00 0.00 0.00 2.97
305 306 1.663173 GGTGGCTCTCTCGGCTATC 59.337 63.158 0.00 0.00 0.00 2.08
306 307 0.825840 GGTGGCTCTCTCGGCTATCT 60.826 60.000 0.00 0.00 0.00 1.98
307 308 0.596082 GTGGCTCTCTCGGCTATCTC 59.404 60.000 0.00 0.00 0.00 2.75
308 309 0.476338 TGGCTCTCTCGGCTATCTCT 59.524 55.000 0.00 0.00 0.00 3.10
309 310 1.165270 GGCTCTCTCGGCTATCTCTC 58.835 60.000 0.00 0.00 0.00 3.20
310 311 1.165270 GCTCTCTCGGCTATCTCTCC 58.835 60.000 0.00 0.00 0.00 3.71
311 312 1.271379 GCTCTCTCGGCTATCTCTCCT 60.271 57.143 0.00 0.00 0.00 3.69
312 313 2.814097 GCTCTCTCGGCTATCTCTCCTT 60.814 54.545 0.00 0.00 0.00 3.36
313 314 3.558321 GCTCTCTCGGCTATCTCTCCTTA 60.558 52.174 0.00 0.00 0.00 2.69
314 315 4.000988 CTCTCTCGGCTATCTCTCCTTAC 58.999 52.174 0.00 0.00 0.00 2.34
315 316 3.078837 CTCTCGGCTATCTCTCCTTACC 58.921 54.545 0.00 0.00 0.00 2.85
316 317 1.807742 CTCGGCTATCTCTCCTTACCG 59.192 57.143 0.00 0.00 40.47 4.02
317 318 1.142465 TCGGCTATCTCTCCTTACCGT 59.858 52.381 0.00 0.00 40.05 4.83
318 319 2.369860 TCGGCTATCTCTCCTTACCGTA 59.630 50.000 0.00 0.00 40.05 4.02
319 320 2.483491 CGGCTATCTCTCCTTACCGTAC 59.517 54.545 0.00 0.00 34.61 3.67
320 321 3.753815 GGCTATCTCTCCTTACCGTACT 58.246 50.000 0.00 0.00 0.00 2.73
321 322 3.502979 GGCTATCTCTCCTTACCGTACTG 59.497 52.174 0.00 0.00 0.00 2.74
322 323 3.502979 GCTATCTCTCCTTACCGTACTGG 59.497 52.174 2.71 2.71 46.41 4.00
332 333 1.214589 CCGTACTGGTTGGTCGAGG 59.785 63.158 0.00 0.00 0.00 4.63
347 348 1.749063 TCGAGGATGTGCGTATGAAGT 59.251 47.619 0.00 0.00 0.00 3.01
359 360 2.731027 CGTATGAAGTGTCTACGCAGCA 60.731 50.000 0.00 0.00 32.83 4.41
405 407 8.401046 CAAAACATTTTGGAACGTAGAAAGAA 57.599 30.769 8.88 0.00 42.81 2.52
406 408 9.030301 CAAAACATTTTGGAACGTAGAAAGAAT 57.970 29.630 8.88 0.00 42.81 2.40
408 410 9.893305 AAACATTTTGGAACGTAGAAAGAATAG 57.107 29.630 0.00 0.00 0.00 1.73
409 411 8.842358 ACATTTTGGAACGTAGAAAGAATAGA 57.158 30.769 0.00 0.00 0.00 1.98
410 412 9.449719 ACATTTTGGAACGTAGAAAGAATAGAT 57.550 29.630 0.00 0.00 0.00 1.98
448 450 1.012841 CTACCGAGTACCTGGTCGAC 58.987 60.000 7.13 7.13 39.70 4.20
484 486 2.509336 CGGTGAGATGACGTGGCC 60.509 66.667 0.00 0.00 0.00 5.36
506 508 3.376546 CGCTATATACCCCTCCGAGTTAC 59.623 52.174 0.00 0.00 0.00 2.50
599 601 5.753438 CCTCAAAGTTATACATAGCTCGCAA 59.247 40.000 0.00 0.00 0.00 4.85
625 630 6.085588 GTCGAATACGCGTACTAATTTCTACC 59.914 42.308 23.19 7.48 39.58 3.18
639 644 8.314751 ACTAATTTCTACCGCTGCATATTCTAT 58.685 33.333 0.00 0.00 0.00 1.98
659 664 6.630071 TCTATAAAATGGAACTTTTGGCAGC 58.370 36.000 0.00 0.00 31.15 5.25
702 707 4.202441 GCTAATCTTGTCCCACATGATGT 58.798 43.478 0.00 0.00 40.66 3.06
738 746 7.592903 CCAGTAATTTTTCTCTTCTTGAACAGC 59.407 37.037 0.00 0.00 0.00 4.40
762 770 2.303022 ACTGACATCGAAAGTGGACCAT 59.697 45.455 0.00 0.00 0.00 3.55
772 812 0.537188 AGTGGACCATTACGCTCAGG 59.463 55.000 0.00 0.00 0.00 3.86
797 837 5.076873 CCCTTGGGTTTCTTGTAATTCTGA 58.923 41.667 0.00 0.00 0.00 3.27
859 899 2.096713 GGCGCAGAAATATCACACGATC 60.097 50.000 10.83 0.00 32.73 3.69
1153 1200 2.060004 CTTCACGCCGCTAGGATCGA 62.060 60.000 0.00 0.00 41.02 3.59
1193 1240 2.520741 CTCCTCCTCCTCGCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
1207 1254 2.182030 CTCCCTCCGTCAACGCTC 59.818 66.667 0.00 0.00 38.18 5.03
1483 1530 1.403687 GCAGGGAGTAGTAGCCTGGG 61.404 65.000 0.00 0.00 0.00 4.45
1496 1543 0.831307 GCCTGGGGTAGAGAACGAAT 59.169 55.000 0.00 0.00 0.00 3.34
1537 1584 1.077089 GCTTCTTCTCCGGTGTACGC 61.077 60.000 0.00 0.00 42.52 4.42
1642 1692 8.147704 TCAGGTGTAAATTATTATGCATCGAGA 58.852 33.333 0.19 0.00 0.00 4.04
1643 1693 8.438513 CAGGTGTAAATTATTATGCATCGAGAG 58.561 37.037 0.19 0.00 0.00 3.20
1644 1694 7.604164 AGGTGTAAATTATTATGCATCGAGAGG 59.396 37.037 0.19 0.00 0.00 3.69
1662 1712 6.209986 TCGAGAGGTAGTCTTGAATAAACCAA 59.790 38.462 0.00 0.00 42.06 3.67
1681 1731 5.815581 ACCAAGATGAATACCTTGTGCTTA 58.184 37.500 0.00 0.00 38.39 3.09
1772 1825 2.185310 ATCACGGCGCCTTTTCTCCT 62.185 55.000 26.68 0.00 0.00 3.69
1774 1827 2.047274 CGGCGCCTTTTCTCCTCA 60.047 61.111 26.68 0.00 0.00 3.86
1778 1831 1.168714 GCGCCTTTTCTCCTCATTGT 58.831 50.000 0.00 0.00 0.00 2.71
1779 1832 2.356135 GCGCCTTTTCTCCTCATTGTA 58.644 47.619 0.00 0.00 0.00 2.41
1781 1834 3.600388 CGCCTTTTCTCCTCATTGTAGT 58.400 45.455 0.00 0.00 0.00 2.73
1782 1835 3.372206 CGCCTTTTCTCCTCATTGTAGTG 59.628 47.826 0.00 0.00 0.00 2.74
1783 1836 4.579869 GCCTTTTCTCCTCATTGTAGTGA 58.420 43.478 0.00 0.00 0.00 3.41
1792 1845 8.547967 TCTCCTCATTGTAGTGATTTTAACAC 57.452 34.615 0.00 0.00 38.38 3.32
1827 1880 2.705154 GTGATTTATCACGGCGCTTTC 58.295 47.619 6.90 0.00 46.46 2.62
1889 1942 2.516048 TAGAAGAGCCAGCCGAGGGT 62.516 60.000 0.00 0.00 43.27 4.34
1914 1967 6.013379 TGTCTATTCCACCTGTTCAATCTTCT 60.013 38.462 0.00 0.00 0.00 2.85
1915 1968 7.180229 TGTCTATTCCACCTGTTCAATCTTCTA 59.820 37.037 0.00 0.00 0.00 2.10
1916 1969 7.492994 GTCTATTCCACCTGTTCAATCTTCTAC 59.507 40.741 0.00 0.00 0.00 2.59
1917 1970 5.825593 TTCCACCTGTTCAATCTTCTACT 57.174 39.130 0.00 0.00 0.00 2.57
1918 1971 5.407407 TCCACCTGTTCAATCTTCTACTC 57.593 43.478 0.00 0.00 0.00 2.59
1919 1972 4.223032 TCCACCTGTTCAATCTTCTACTCC 59.777 45.833 0.00 0.00 0.00 3.85
1920 1973 4.508662 CACCTGTTCAATCTTCTACTCCC 58.491 47.826 0.00 0.00 0.00 4.30
1921 1974 4.223923 CACCTGTTCAATCTTCTACTCCCT 59.776 45.833 0.00 0.00 0.00 4.20
1922 1975 4.468153 ACCTGTTCAATCTTCTACTCCCTC 59.532 45.833 0.00 0.00 0.00 4.30
1923 1976 4.714308 CCTGTTCAATCTTCTACTCCCTCT 59.286 45.833 0.00 0.00 0.00 3.69
1924 1977 5.395103 CCTGTTCAATCTTCTACTCCCTCTG 60.395 48.000 0.00 0.00 0.00 3.35
1925 1978 5.087323 TGTTCAATCTTCTACTCCCTCTGT 58.913 41.667 0.00 0.00 0.00 3.41
1926 1979 6.253758 TGTTCAATCTTCTACTCCCTCTGTA 58.746 40.000 0.00 0.00 0.00 2.74
1927 1980 6.724441 TGTTCAATCTTCTACTCCCTCTGTAA 59.276 38.462 0.00 0.00 0.00 2.41
1928 1981 7.400339 TGTTCAATCTTCTACTCCCTCTGTAAT 59.600 37.037 0.00 0.00 0.00 1.89
1929 1982 7.353414 TCAATCTTCTACTCCCTCTGTAATG 57.647 40.000 0.00 0.00 0.00 1.90
1930 1983 7.126061 TCAATCTTCTACTCCCTCTGTAATGA 58.874 38.462 0.00 0.00 0.00 2.57
1931 1984 7.619698 TCAATCTTCTACTCCCTCTGTAATGAA 59.380 37.037 0.00 0.00 0.00 2.57
1932 1985 7.979786 ATCTTCTACTCCCTCTGTAATGAAA 57.020 36.000 0.00 0.00 0.00 2.69
1933 1986 7.979786 TCTTCTACTCCCTCTGTAATGAAAT 57.020 36.000 0.00 0.00 0.00 2.17
1934 1987 9.661954 ATCTTCTACTCCCTCTGTAATGAAATA 57.338 33.333 0.00 0.00 0.00 1.40
1935 1988 9.661954 TCTTCTACTCCCTCTGTAATGAAATAT 57.338 33.333 0.00 0.00 0.00 1.28
1940 1993 8.196378 ACTCCCTCTGTAATGAAATATACTCC 57.804 38.462 0.00 0.00 0.00 3.85
1941 1994 7.235812 ACTCCCTCTGTAATGAAATATACTCCC 59.764 40.741 0.00 0.00 0.00 4.30
1942 1995 7.313731 TCCCTCTGTAATGAAATATACTCCCT 58.686 38.462 0.00 0.00 0.00 4.20
1943 1996 7.455008 TCCCTCTGTAATGAAATATACTCCCTC 59.545 40.741 0.00 0.00 0.00 4.30
1944 1997 7.310734 CCCTCTGTAATGAAATATACTCCCTCC 60.311 44.444 0.00 0.00 0.00 4.30
1945 1998 7.456269 CCTCTGTAATGAAATATACTCCCTCCT 59.544 40.741 0.00 0.00 0.00 3.69
1946 1999 8.798975 TCTGTAATGAAATATACTCCCTCCTT 57.201 34.615 0.00 0.00 0.00 3.36
1947 2000 9.225682 TCTGTAATGAAATATACTCCCTCCTTT 57.774 33.333 0.00 0.00 0.00 3.11
1948 2001 9.495572 CTGTAATGAAATATACTCCCTCCTTTC 57.504 37.037 0.00 0.00 0.00 2.62
1949 2002 8.998814 TGTAATGAAATATACTCCCTCCTTTCA 58.001 33.333 0.00 0.00 37.12 2.69
1952 2005 7.937700 TGAAATATACTCCCTCCTTTCATCT 57.062 36.000 0.00 0.00 30.15 2.90
1953 2006 9.621239 ATGAAATATACTCCCTCCTTTCATCTA 57.379 33.333 0.00 0.00 38.34 1.98
1954 2007 9.621239 TGAAATATACTCCCTCCTTTCATCTAT 57.379 33.333 0.00 0.00 30.15 1.98
1960 2013 6.507568 ACTCCCTCCTTTCATCTATATAGGG 58.492 44.000 9.89 0.00 43.23 3.53
1961 2014 5.281314 TCCCTCCTTTCATCTATATAGGGC 58.719 45.833 9.89 0.00 41.88 5.19
1962 2015 4.410555 CCCTCCTTTCATCTATATAGGGCC 59.589 50.000 9.89 0.00 36.30 5.80
1963 2016 5.284582 CCTCCTTTCATCTATATAGGGCCT 58.715 45.833 12.58 12.58 0.00 5.19
1964 2017 6.444704 CCTCCTTTCATCTATATAGGGCCTA 58.555 44.000 17.16 17.16 0.00 3.93
1965 2018 6.903534 CCTCCTTTCATCTATATAGGGCCTAA 59.096 42.308 18.91 7.61 0.00 2.69
1966 2019 7.570607 CCTCCTTTCATCTATATAGGGCCTAAT 59.429 40.741 18.91 14.19 0.00 1.73
1967 2020 8.324191 TCCTTTCATCTATATAGGGCCTAATG 57.676 38.462 18.91 15.78 0.00 1.90
1968 2021 6.995091 CCTTTCATCTATATAGGGCCTAATGC 59.005 42.308 18.91 0.00 40.16 3.56
1969 2022 5.791336 TCATCTATATAGGGCCTAATGCG 57.209 43.478 18.91 7.12 42.61 4.73
1970 2023 5.208890 TCATCTATATAGGGCCTAATGCGT 58.791 41.667 18.91 2.76 42.61 5.24
1971 2024 5.661312 TCATCTATATAGGGCCTAATGCGTT 59.339 40.000 18.91 1.94 42.61 4.84
1972 2025 6.156256 TCATCTATATAGGGCCTAATGCGTTT 59.844 38.462 18.91 1.12 42.61 3.60
1973 2026 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
1974 2027 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
1975 2028 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
1976 2029 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
1977 2030 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
1978 2031 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
1979 2032 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
1980 2033 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
1981 2034 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
1982 2035 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
1983 2036 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
1984 2037 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
1985 2038 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
1986 2039 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
1987 2040 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
1988 2041 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
1989 2042 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
1990 2043 4.612939 GCGTTTTTCGAGGCTAACTTTGAT 60.613 41.667 0.00 0.00 42.86 2.57
1991 2044 5.080068 CGTTTTTCGAGGCTAACTTTGATC 58.920 41.667 0.00 0.00 42.86 2.92
1992 2045 5.333798 CGTTTTTCGAGGCTAACTTTGATCA 60.334 40.000 0.00 0.00 42.86 2.92
1993 2046 6.435428 GTTTTTCGAGGCTAACTTTGATCAA 58.565 36.000 3.38 3.38 0.00 2.57
1994 2047 6.627395 TTTTCGAGGCTAACTTTGATCAAA 57.373 33.333 19.45 19.45 0.00 2.69
1995 2048 6.817765 TTTCGAGGCTAACTTTGATCAAAT 57.182 33.333 20.76 10.14 0.00 2.32
1996 2049 5.801350 TCGAGGCTAACTTTGATCAAATG 57.199 39.130 20.76 16.20 0.00 2.32
1997 2050 5.245531 TCGAGGCTAACTTTGATCAAATGT 58.754 37.500 20.76 16.77 0.00 2.71
1998 2051 5.705441 TCGAGGCTAACTTTGATCAAATGTT 59.295 36.000 25.45 25.45 0.00 2.71
1999 2052 6.876789 TCGAGGCTAACTTTGATCAAATGTTA 59.123 34.615 25.15 25.15 0.00 2.41
2000 2053 7.064609 TCGAGGCTAACTTTGATCAAATGTTAG 59.935 37.037 33.49 33.49 40.29 2.34
2001 2054 7.064609 CGAGGCTAACTTTGATCAAATGTTAGA 59.935 37.037 36.90 23.45 40.08 2.10
2002 2055 8.273780 AGGCTAACTTTGATCAAATGTTAGAG 57.726 34.615 36.90 27.90 40.08 2.43
2003 2056 7.885399 AGGCTAACTTTGATCAAATGTTAGAGT 59.115 33.333 36.90 28.98 40.08 3.24
2004 2057 9.162764 GGCTAACTTTGATCAAATGTTAGAGTA 57.837 33.333 36.90 22.64 40.08 2.59
2034 2087 7.760131 ATATGACATGCAATTTACACAAAGC 57.240 32.000 0.00 0.00 0.00 3.51
2035 2088 4.941657 TGACATGCAATTTACACAAAGCA 58.058 34.783 0.00 0.00 31.67 3.91
2036 2089 5.539979 TGACATGCAATTTACACAAAGCAT 58.460 33.333 0.00 0.00 36.50 3.79
2037 2090 6.685657 TGACATGCAATTTACACAAAGCATA 58.314 32.000 0.00 0.00 34.85 3.14
2038 2091 6.585702 TGACATGCAATTTACACAAAGCATAC 59.414 34.615 0.00 0.00 34.85 2.39
2039 2092 5.868801 ACATGCAATTTACACAAAGCATACC 59.131 36.000 0.00 0.00 34.85 2.73
2040 2093 4.480541 TGCAATTTACACAAAGCATACCG 58.519 39.130 0.00 0.00 0.00 4.02
2041 2094 4.022762 TGCAATTTACACAAAGCATACCGT 60.023 37.500 0.00 0.00 0.00 4.83
2042 2095 4.557301 GCAATTTACACAAAGCATACCGTC 59.443 41.667 0.00 0.00 0.00 4.79
2043 2096 5.694816 CAATTTACACAAAGCATACCGTCA 58.305 37.500 0.00 0.00 0.00 4.35
2044 2097 5.950758 ATTTACACAAAGCATACCGTCAA 57.049 34.783 0.00 0.00 0.00 3.18
2045 2098 5.752892 TTTACACAAAGCATACCGTCAAA 57.247 34.783 0.00 0.00 0.00 2.69
2046 2099 5.950758 TTACACAAAGCATACCGTCAAAT 57.049 34.783 0.00 0.00 0.00 2.32
2047 2100 7.436430 TTTACACAAAGCATACCGTCAAATA 57.564 32.000 0.00 0.00 0.00 1.40
2048 2101 5.291293 ACACAAAGCATACCGTCAAATAC 57.709 39.130 0.00 0.00 0.00 1.89
2062 2115 6.021055 CGTCAAATACGTATGTGAAAGGAG 57.979 41.667 26.30 13.51 46.72 3.69
2063 2116 5.500290 CGTCAAATACGTATGTGAAAGGAGC 60.500 44.000 26.30 13.89 46.72 4.70
2064 2117 5.581085 GTCAAATACGTATGTGAAAGGAGCT 59.419 40.000 26.30 0.00 32.06 4.09
2065 2118 6.092259 GTCAAATACGTATGTGAAAGGAGCTT 59.908 38.462 26.30 2.81 32.06 3.74
2066 2119 6.653320 TCAAATACGTATGTGAAAGGAGCTTT 59.347 34.615 23.29 1.50 36.29 3.51
2067 2120 6.663944 AATACGTATGTGAAAGGAGCTTTC 57.336 37.500 9.24 0.00 46.88 2.62
2115 2168 8.375608 ACATCTCATGCACTATTAATCTTGTC 57.624 34.615 0.00 0.00 0.00 3.18
2116 2169 7.989170 ACATCTCATGCACTATTAATCTTGTCA 59.011 33.333 0.00 0.00 0.00 3.58
2117 2170 8.833493 CATCTCATGCACTATTAATCTTGTCAA 58.167 33.333 0.00 0.00 0.00 3.18
2118 2171 8.969260 TCTCATGCACTATTAATCTTGTCAAT 57.031 30.769 0.00 0.00 0.00 2.57
2121 2174 9.836864 TCATGCACTATTAATCTTGTCAATAGT 57.163 29.630 0.00 0.00 43.09 2.12
2131 2184 9.715121 TTAATCTTGTCAATAGTTAAAGACGGT 57.285 29.630 0.00 0.00 33.83 4.83
2132 2185 7.829378 ATCTTGTCAATAGTTAAAGACGGTC 57.171 36.000 0.00 0.00 33.83 4.79
2133 2186 6.989659 TCTTGTCAATAGTTAAAGACGGTCT 58.010 36.000 4.45 4.45 33.83 3.85
2134 2187 7.439381 TCTTGTCAATAGTTAAAGACGGTCTT 58.561 34.615 17.38 17.38 38.59 3.01
2135 2188 7.384115 TCTTGTCAATAGTTAAAGACGGTCTTG 59.616 37.037 23.05 9.65 36.71 3.02
2136 2189 6.751157 TGTCAATAGTTAAAGACGGTCTTGA 58.249 36.000 23.05 13.92 36.71 3.02
2137 2190 7.211573 TGTCAATAGTTAAAGACGGTCTTGAA 58.788 34.615 23.05 19.03 36.71 2.69
2138 2191 7.711772 TGTCAATAGTTAAAGACGGTCTTGAAA 59.288 33.333 23.05 16.99 36.71 2.69
2139 2192 8.553696 GTCAATAGTTAAAGACGGTCTTGAAAA 58.446 33.333 23.05 14.77 36.71 2.29
2140 2193 9.111613 TCAATAGTTAAAGACGGTCTTGAAAAA 57.888 29.630 23.05 13.44 36.71 1.94
2141 2194 9.893305 CAATAGTTAAAGACGGTCTTGAAAAAT 57.107 29.630 23.05 17.66 36.71 1.82
2142 2195 9.893305 AATAGTTAAAGACGGTCTTGAAAAATG 57.107 29.630 23.05 0.00 36.71 2.32
2143 2196 7.562454 AGTTAAAGACGGTCTTGAAAAATGA 57.438 32.000 23.05 1.60 36.71 2.57
2144 2197 7.992008 AGTTAAAGACGGTCTTGAAAAATGAA 58.008 30.769 23.05 6.05 36.71 2.57
2145 2198 8.630037 AGTTAAAGACGGTCTTGAAAAATGAAT 58.370 29.630 23.05 6.86 36.71 2.57
2146 2199 9.244799 GTTAAAGACGGTCTTGAAAAATGAATT 57.755 29.630 23.05 6.38 36.71 2.17
2149 2202 7.145932 AGACGGTCTTGAAAAATGAATTAGG 57.854 36.000 4.45 0.00 0.00 2.69
2150 2203 5.709966 ACGGTCTTGAAAAATGAATTAGGC 58.290 37.500 0.00 0.00 0.00 3.93
2151 2204 5.476945 ACGGTCTTGAAAAATGAATTAGGCT 59.523 36.000 0.00 0.00 0.00 4.58
2152 2205 6.030228 CGGTCTTGAAAAATGAATTAGGCTC 58.970 40.000 0.00 0.00 0.00 4.70
2153 2206 6.127897 CGGTCTTGAAAAATGAATTAGGCTCT 60.128 38.462 0.00 0.00 0.00 4.09
2154 2207 7.065803 CGGTCTTGAAAAATGAATTAGGCTCTA 59.934 37.037 0.00 0.00 0.00 2.43
2155 2208 8.907885 GGTCTTGAAAAATGAATTAGGCTCTAT 58.092 33.333 0.00 0.00 0.00 1.98
2163 2216 9.512588 AAAATGAATTAGGCTCTATACAGATGG 57.487 33.333 0.00 0.00 0.00 3.51
2164 2217 8.441311 AATGAATTAGGCTCTATACAGATGGA 57.559 34.615 0.00 0.00 0.00 3.41
2165 2218 7.855784 TGAATTAGGCTCTATACAGATGGAA 57.144 36.000 0.00 0.00 0.00 3.53
2166 2219 7.901029 TGAATTAGGCTCTATACAGATGGAAG 58.099 38.462 0.00 0.00 0.00 3.46
2167 2220 6.865834 ATTAGGCTCTATACAGATGGAAGG 57.134 41.667 0.00 0.00 0.00 3.46
2168 2221 4.477536 AGGCTCTATACAGATGGAAGGA 57.522 45.455 0.00 0.00 0.00 3.36
2169 2222 4.415596 AGGCTCTATACAGATGGAAGGAG 58.584 47.826 0.00 0.00 0.00 3.69
2170 2223 4.107149 AGGCTCTATACAGATGGAAGGAGA 59.893 45.833 0.00 0.00 0.00 3.71
2171 2224 4.835615 GGCTCTATACAGATGGAAGGAGAA 59.164 45.833 0.00 0.00 0.00 2.87
2172 2225 5.305644 GGCTCTATACAGATGGAAGGAGAAA 59.694 44.000 0.00 0.00 0.00 2.52
2173 2226 6.454795 GCTCTATACAGATGGAAGGAGAAAG 58.545 44.000 0.00 0.00 0.00 2.62
2174 2227 6.041523 GCTCTATACAGATGGAAGGAGAAAGT 59.958 42.308 0.00 0.00 0.00 2.66
2175 2228 7.231722 GCTCTATACAGATGGAAGGAGAAAGTA 59.768 40.741 0.00 0.00 0.00 2.24
2176 2229 9.137459 CTCTATACAGATGGAAGGAGAAAGTAA 57.863 37.037 0.00 0.00 0.00 2.24
2177 2230 9.137459 TCTATACAGATGGAAGGAGAAAGTAAG 57.863 37.037 0.00 0.00 0.00 2.34
2178 2231 7.979786 ATACAGATGGAAGGAGAAAGTAAGA 57.020 36.000 0.00 0.00 0.00 2.10
2179 2232 6.293004 ACAGATGGAAGGAGAAAGTAAGAG 57.707 41.667 0.00 0.00 0.00 2.85
2180 2233 5.782845 ACAGATGGAAGGAGAAAGTAAGAGT 59.217 40.000 0.00 0.00 0.00 3.24
2181 2234 6.105333 CAGATGGAAGGAGAAAGTAAGAGTG 58.895 44.000 0.00 0.00 0.00 3.51
2182 2235 5.782845 AGATGGAAGGAGAAAGTAAGAGTGT 59.217 40.000 0.00 0.00 0.00 3.55
2183 2236 5.888982 TGGAAGGAGAAAGTAAGAGTGTT 57.111 39.130 0.00 0.00 0.00 3.32
2184 2237 6.248569 TGGAAGGAGAAAGTAAGAGTGTTT 57.751 37.500 0.00 0.00 0.00 2.83
2185 2238 7.369551 TGGAAGGAGAAAGTAAGAGTGTTTA 57.630 36.000 0.00 0.00 0.00 2.01
2186 2239 7.442656 TGGAAGGAGAAAGTAAGAGTGTTTAG 58.557 38.462 0.00 0.00 0.00 1.85
2187 2240 7.289317 TGGAAGGAGAAAGTAAGAGTGTTTAGA 59.711 37.037 0.00 0.00 0.00 2.10
2188 2241 8.315482 GGAAGGAGAAAGTAAGAGTGTTTAGAT 58.685 37.037 0.00 0.00 0.00 1.98
2189 2242 9.361315 GAAGGAGAAAGTAAGAGTGTTTAGATC 57.639 37.037 0.00 0.00 0.00 2.75
2190 2243 8.423906 AGGAGAAAGTAAGAGTGTTTAGATCA 57.576 34.615 0.00 0.00 0.00 2.92
2191 2244 9.041354 AGGAGAAAGTAAGAGTGTTTAGATCAT 57.959 33.333 0.00 0.00 0.00 2.45
2192 2245 9.660180 GGAGAAAGTAAGAGTGTTTAGATCATT 57.340 33.333 0.00 0.00 0.00 2.57
2211 2264 9.250624 AGATCATTAAAGTAGTCATCTAAACGC 57.749 33.333 0.00 0.00 0.00 4.84
2212 2265 9.250624 GATCATTAAAGTAGTCATCTAAACGCT 57.749 33.333 0.00 0.00 0.00 5.07
2213 2266 8.630278 TCATTAAAGTAGTCATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03
2214 2267 8.467598 TCATTAAAGTAGTCATCTAAACGCTCT 58.532 33.333 0.00 0.00 0.00 4.09
2215 2268 9.088512 CATTAAAGTAGTCATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
2234 2287 9.837525 ACGCTCTTATATTATTAGTTTACGGAG 57.162 33.333 0.00 0.00 0.00 4.63
2235 2288 9.286946 CGCTCTTATATTATTAGTTTACGGAGG 57.713 37.037 0.00 0.00 0.00 4.30
2236 2289 9.583765 GCTCTTATATTATTAGTTTACGGAGGG 57.416 37.037 0.00 0.00 0.00 4.30
2277 2333 1.281867 ACGATCAGCTTTCCAATGGGA 59.718 47.619 0.00 0.00 43.03 4.37
2305 2361 1.935933 GGCAGACCGTACGATGAAAT 58.064 50.000 18.76 0.00 0.00 2.17
2321 2377 2.223829 TGAAATGAGTAGCTAGCTCCGC 60.224 50.000 23.26 12.89 32.31 5.54
2330 2386 1.509370 CTAGCTCCGCGCGTATACG 60.509 63.158 29.95 20.87 45.59 3.06
2391 2479 1.078637 AGCGACTGCAGCACATCAT 60.079 52.632 15.27 0.00 46.23 2.45
2404 2492 3.565764 CACATCATGCCTAGAGGGAAA 57.434 47.619 0.00 0.00 39.60 3.13
2405 2493 3.209410 CACATCATGCCTAGAGGGAAAC 58.791 50.000 0.00 0.00 39.60 2.78
2406 2494 3.118112 CACATCATGCCTAGAGGGAAACT 60.118 47.826 0.00 0.00 39.60 2.66
2407 2495 3.118112 ACATCATGCCTAGAGGGAAACTG 60.118 47.826 0.00 0.00 39.60 3.16
2408 2496 1.839994 TCATGCCTAGAGGGAAACTGG 59.160 52.381 0.00 0.00 39.60 4.00
2409 2497 1.133976 CATGCCTAGAGGGAAACTGGG 60.134 57.143 0.00 0.00 39.60 4.45
2410 2498 0.178873 TGCCTAGAGGGAAACTGGGT 60.179 55.000 0.00 0.00 38.11 4.51
2411 2499 1.079825 TGCCTAGAGGGAAACTGGGTA 59.920 52.381 0.00 0.00 38.11 3.69
2412 2500 2.293586 TGCCTAGAGGGAAACTGGGTAT 60.294 50.000 0.00 0.00 38.11 2.73
2413 2501 2.369203 GCCTAGAGGGAAACTGGGTATC 59.631 54.545 0.00 0.00 38.11 2.24
2414 2502 3.654273 CCTAGAGGGAAACTGGGTATCA 58.346 50.000 0.00 0.00 37.23 2.15
2415 2503 3.388350 CCTAGAGGGAAACTGGGTATCAC 59.612 52.174 0.00 0.00 37.23 3.06
2416 2504 1.831736 AGAGGGAAACTGGGTATCACG 59.168 52.381 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.935024 TCCGAAGATGGTCCGGAG 58.065 61.111 3.06 0.00 46.17 4.63
50 51 2.107141 GCTCCGAAGATGGTCCGG 59.893 66.667 0.00 0.00 44.22 5.14
51 52 1.519455 GTGCTCCGAAGATGGTCCG 60.519 63.158 0.00 0.00 0.00 4.79
52 53 1.519455 CGTGCTCCGAAGATGGTCC 60.519 63.158 0.00 0.00 39.56 4.46
53 54 0.526524 CTCGTGCTCCGAAGATGGTC 60.527 60.000 0.99 0.00 46.75 4.02
54 55 1.513158 CTCGTGCTCCGAAGATGGT 59.487 57.895 0.99 0.00 46.75 3.55
55 56 1.227089 CCTCGTGCTCCGAAGATGG 60.227 63.158 0.99 0.00 46.75 3.51
56 57 0.526524 GTCCTCGTGCTCCGAAGATG 60.527 60.000 1.93 0.00 46.75 2.90
57 58 0.965866 TGTCCTCGTGCTCCGAAGAT 60.966 55.000 1.93 0.00 46.75 2.40
58 59 1.587043 CTGTCCTCGTGCTCCGAAGA 61.587 60.000 0.99 0.00 46.75 2.87
59 60 1.153939 CTGTCCTCGTGCTCCGAAG 60.154 63.158 0.99 0.00 46.75 3.79
60 61 2.636412 CCTGTCCTCGTGCTCCGAA 61.636 63.158 0.99 0.00 46.75 4.30
61 62 3.062466 CCTGTCCTCGTGCTCCGA 61.062 66.667 0.00 0.00 45.00 4.55
62 63 4.803426 GCCTGTCCTCGTGCTCCG 62.803 72.222 0.00 0.00 38.13 4.63
63 64 4.459089 GGCCTGTCCTCGTGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
64 65 4.803426 CGGCCTGTCCTCGTGCTC 62.803 72.222 0.00 0.00 0.00 4.26
66 67 4.803426 CTCGGCCTGTCCTCGTGC 62.803 72.222 0.00 0.00 0.00 5.34
67 68 4.135153 CCTCGGCCTGTCCTCGTG 62.135 72.222 0.00 0.00 0.00 4.35
108 109 3.740128 CTCCACCTTCCGCCCATCG 62.740 68.421 0.00 0.00 38.08 3.84
109 110 2.190578 CTCCACCTTCCGCCCATC 59.809 66.667 0.00 0.00 0.00 3.51
110 111 2.198304 GAACTCCACCTTCCGCCCAT 62.198 60.000 0.00 0.00 0.00 4.00
111 112 2.852075 AACTCCACCTTCCGCCCA 60.852 61.111 0.00 0.00 0.00 5.36
112 113 2.046217 GAACTCCACCTTCCGCCC 60.046 66.667 0.00 0.00 0.00 6.13
113 114 1.671379 GTGAACTCCACCTTCCGCC 60.671 63.158 0.00 0.00 39.86 6.13
114 115 2.027625 CGTGAACTCCACCTTCCGC 61.028 63.158 0.00 0.00 42.76 5.54
115 116 1.374252 CCGTGAACTCCACCTTCCG 60.374 63.158 0.00 0.00 42.76 4.30
116 117 0.037232 CTCCGTGAACTCCACCTTCC 60.037 60.000 0.00 0.00 42.76 3.46
117 118 0.670854 GCTCCGTGAACTCCACCTTC 60.671 60.000 0.00 0.00 42.76 3.46
118 119 1.371558 GCTCCGTGAACTCCACCTT 59.628 57.895 0.00 0.00 42.76 3.50
119 120 1.821061 CTGCTCCGTGAACTCCACCT 61.821 60.000 0.00 0.00 42.76 4.00
120 121 1.374758 CTGCTCCGTGAACTCCACC 60.375 63.158 0.00 0.00 42.76 4.61
121 122 1.374758 CCTGCTCCGTGAACTCCAC 60.375 63.158 0.00 0.00 42.30 4.02
122 123 2.583441 CCCTGCTCCGTGAACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
123 124 2.266055 CCCTGCTCCGTGAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
124 125 1.079750 GTCCCTGCTCCGTGAACTC 60.080 63.158 0.00 0.00 0.00 3.01
125 126 1.122019 AAGTCCCTGCTCCGTGAACT 61.122 55.000 0.00 0.00 0.00 3.01
126 127 0.951040 CAAGTCCCTGCTCCGTGAAC 60.951 60.000 0.00 0.00 0.00 3.18
127 128 1.371183 CAAGTCCCTGCTCCGTGAA 59.629 57.895 0.00 0.00 0.00 3.18
128 129 3.059982 CAAGTCCCTGCTCCGTGA 58.940 61.111 0.00 0.00 0.00 4.35
129 130 2.743928 GCAAGTCCCTGCTCCGTG 60.744 66.667 0.00 0.00 39.34 4.94
130 131 4.021925 GGCAAGTCCCTGCTCCGT 62.022 66.667 0.00 0.00 42.25 4.69
136 137 3.136123 CATGGCGGCAAGTCCCTG 61.136 66.667 18.31 4.38 0.00 4.45
149 150 4.170062 CAACGCCTGCTCGCATGG 62.170 66.667 0.00 0.00 0.00 3.66
150 151 4.170062 CCAACGCCTGCTCGCATG 62.170 66.667 0.00 0.00 0.00 4.06
151 152 4.393155 TCCAACGCCTGCTCGCAT 62.393 61.111 0.00 0.00 0.00 4.73
158 159 4.760047 CCTCCCGTCCAACGCCTG 62.760 72.222 0.00 0.00 40.91 4.85
162 163 4.760047 CCTGCCTCCCGTCCAACG 62.760 72.222 0.00 0.00 42.11 4.10
180 181 4.323477 TGTTCCGTTCCCCAGCCG 62.323 66.667 0.00 0.00 0.00 5.52
181 182 2.359975 CTGTTCCGTTCCCCAGCC 60.360 66.667 0.00 0.00 0.00 4.85
182 183 2.359975 CCTGTTCCGTTCCCCAGC 60.360 66.667 0.00 0.00 0.00 4.85
183 184 2.359975 GCCTGTTCCGTTCCCCAG 60.360 66.667 0.00 0.00 0.00 4.45
184 185 4.323477 CGCCTGTTCCGTTCCCCA 62.323 66.667 0.00 0.00 0.00 4.96
186 187 4.324991 ACCGCCTGTTCCGTTCCC 62.325 66.667 0.00 0.00 0.00 3.97
187 188 3.047877 CACCGCCTGTTCCGTTCC 61.048 66.667 0.00 0.00 0.00 3.62
188 189 3.047877 CCACCGCCTGTTCCGTTC 61.048 66.667 0.00 0.00 0.00 3.95
214 215 1.448540 CTGCCATGGTCACTCCGAC 60.449 63.158 14.67 0.00 44.57 4.79
215 216 1.607801 CTCTGCCATGGTCACTCCGA 61.608 60.000 14.67 4.90 39.52 4.55
216 217 1.153489 CTCTGCCATGGTCACTCCG 60.153 63.158 14.67 0.66 39.52 4.63
217 218 1.222936 CCTCTGCCATGGTCACTCC 59.777 63.158 14.67 0.00 0.00 3.85
218 219 1.222936 CCCTCTGCCATGGTCACTC 59.777 63.158 14.67 0.00 0.00 3.51
219 220 1.136329 AACCCTCTGCCATGGTCACT 61.136 55.000 14.67 0.00 0.00 3.41
220 221 0.962356 CAACCCTCTGCCATGGTCAC 60.962 60.000 14.67 0.00 0.00 3.67
221 222 1.133181 TCAACCCTCTGCCATGGTCA 61.133 55.000 14.67 10.98 0.00 4.02
222 223 0.678048 GTCAACCCTCTGCCATGGTC 60.678 60.000 14.67 6.41 0.00 4.02
223 224 1.380302 GTCAACCCTCTGCCATGGT 59.620 57.895 14.67 0.00 0.00 3.55
224 225 1.746615 CGTCAACCCTCTGCCATGG 60.747 63.158 7.63 7.63 0.00 3.66
225 226 2.401766 GCGTCAACCCTCTGCCATG 61.402 63.158 0.00 0.00 0.00 3.66
226 227 2.045926 GCGTCAACCCTCTGCCAT 60.046 61.111 0.00 0.00 0.00 4.40
227 228 4.329545 GGCGTCAACCCTCTGCCA 62.330 66.667 0.00 0.00 45.06 4.92
265 266 3.889692 CATCCCATCCCCCACCCG 61.890 72.222 0.00 0.00 0.00 5.28
266 267 3.511610 CCATCCCATCCCCCACCC 61.512 72.222 0.00 0.00 0.00 4.61
267 268 2.699938 ACCATCCCATCCCCCACC 60.700 66.667 0.00 0.00 0.00 4.61
268 269 2.603008 CACCATCCCATCCCCCAC 59.397 66.667 0.00 0.00 0.00 4.61
269 270 2.699554 CCACCATCCCATCCCCCA 60.700 66.667 0.00 0.00 0.00 4.96
270 271 3.511610 CCCACCATCCCATCCCCC 61.512 72.222 0.00 0.00 0.00 5.40
271 272 3.511610 CCCCACCATCCCATCCCC 61.512 72.222 0.00 0.00 0.00 4.81
272 273 2.699938 ACCCCACCATCCCATCCC 60.700 66.667 0.00 0.00 0.00 3.85
273 274 2.603008 CACCCCACCATCCCATCC 59.397 66.667 0.00 0.00 0.00 3.51
274 275 2.603008 CCACCCCACCATCCCATC 59.397 66.667 0.00 0.00 0.00 3.51
275 276 3.754472 GCCACCCCACCATCCCAT 61.754 66.667 0.00 0.00 0.00 4.00
277 278 4.129148 GAGCCACCCCACCATCCC 62.129 72.222 0.00 0.00 0.00 3.85
278 279 3.017581 AGAGCCACCCCACCATCC 61.018 66.667 0.00 0.00 0.00 3.51
279 280 1.977293 GAGAGAGCCACCCCACCATC 61.977 65.000 0.00 0.00 0.00 3.51
280 281 1.997874 GAGAGAGCCACCCCACCAT 60.998 63.158 0.00 0.00 0.00 3.55
281 282 2.607750 GAGAGAGCCACCCCACCA 60.608 66.667 0.00 0.00 0.00 4.17
282 283 3.775654 CGAGAGAGCCACCCCACC 61.776 72.222 0.00 0.00 0.00 4.61
283 284 3.775654 CCGAGAGAGCCACCCCAC 61.776 72.222 0.00 0.00 0.00 4.61
286 287 1.811645 GATAGCCGAGAGAGCCACCC 61.812 65.000 0.00 0.00 0.00 4.61
287 288 0.825840 AGATAGCCGAGAGAGCCACC 60.826 60.000 0.00 0.00 0.00 4.61
288 289 0.596082 GAGATAGCCGAGAGAGCCAC 59.404 60.000 0.00 0.00 0.00 5.01
289 290 0.476338 AGAGATAGCCGAGAGAGCCA 59.524 55.000 0.00 0.00 0.00 4.75
290 291 1.165270 GAGAGATAGCCGAGAGAGCC 58.835 60.000 0.00 0.00 0.00 4.70
291 292 1.165270 GGAGAGATAGCCGAGAGAGC 58.835 60.000 0.00 0.00 0.00 4.09
292 293 2.859165 AGGAGAGATAGCCGAGAGAG 57.141 55.000 0.00 0.00 0.00 3.20
293 294 3.244630 GGTAAGGAGAGATAGCCGAGAGA 60.245 52.174 0.00 0.00 0.00 3.10
294 295 3.078837 GGTAAGGAGAGATAGCCGAGAG 58.921 54.545 0.00 0.00 0.00 3.20
295 296 2.550423 CGGTAAGGAGAGATAGCCGAGA 60.550 54.545 0.00 0.00 40.04 4.04
296 297 1.807742 CGGTAAGGAGAGATAGCCGAG 59.192 57.143 0.00 0.00 40.04 4.63
297 298 1.142465 ACGGTAAGGAGAGATAGCCGA 59.858 52.381 7.08 0.00 40.04 5.54
298 299 1.606903 ACGGTAAGGAGAGATAGCCG 58.393 55.000 0.00 0.00 42.86 5.52
299 300 3.502979 CAGTACGGTAAGGAGAGATAGCC 59.497 52.174 0.00 0.00 0.00 3.93
300 301 3.502979 CCAGTACGGTAAGGAGAGATAGC 59.497 52.174 2.57 0.00 0.00 2.97
314 315 1.214589 CCTCGACCAACCAGTACGG 59.785 63.158 2.71 2.71 42.50 4.02
315 316 0.815734 ATCCTCGACCAACCAGTACG 59.184 55.000 0.00 0.00 0.00 3.67
316 317 1.549170 ACATCCTCGACCAACCAGTAC 59.451 52.381 0.00 0.00 0.00 2.73
317 318 1.548719 CACATCCTCGACCAACCAGTA 59.451 52.381 0.00 0.00 0.00 2.74
318 319 0.321671 CACATCCTCGACCAACCAGT 59.678 55.000 0.00 0.00 0.00 4.00
319 320 1.021390 GCACATCCTCGACCAACCAG 61.021 60.000 0.00 0.00 0.00 4.00
320 321 1.003839 GCACATCCTCGACCAACCA 60.004 57.895 0.00 0.00 0.00 3.67
321 322 2.100631 CGCACATCCTCGACCAACC 61.101 63.158 0.00 0.00 0.00 3.77
322 323 0.108992 TACGCACATCCTCGACCAAC 60.109 55.000 0.00 0.00 0.00 3.77
323 324 0.821517 ATACGCACATCCTCGACCAA 59.178 50.000 0.00 0.00 0.00 3.67
324 325 0.102300 CATACGCACATCCTCGACCA 59.898 55.000 0.00 0.00 0.00 4.02
325 326 0.384309 TCATACGCACATCCTCGACC 59.616 55.000 0.00 0.00 0.00 4.79
326 327 2.120232 CTTCATACGCACATCCTCGAC 58.880 52.381 0.00 0.00 0.00 4.20
327 328 1.749063 ACTTCATACGCACATCCTCGA 59.251 47.619 0.00 0.00 0.00 4.04
328 329 1.854743 CACTTCATACGCACATCCTCG 59.145 52.381 0.00 0.00 0.00 4.63
332 333 3.482472 CGTAGACACTTCATACGCACATC 59.518 47.826 0.00 0.00 36.28 3.06
347 348 0.603065 AGACACATGCTGCGTAGACA 59.397 50.000 4.08 2.14 0.00 3.41
355 356 2.135139 ACACGTTACAGACACATGCTG 58.865 47.619 0.00 0.00 39.26 4.41
359 360 6.665474 TTGTTTAACACGTTACAGACACAT 57.335 33.333 0.00 0.00 0.00 3.21
365 366 9.454322 CAAAATGTTTTGTTTAACACGTTACAG 57.546 29.630 9.48 0.00 41.87 2.74
402 404 5.187967 CCGGGGACTAGCAATAATCTATTCT 59.812 44.000 0.00 0.00 0.00 2.40
403 405 5.420409 CCGGGGACTAGCAATAATCTATTC 58.580 45.833 0.00 0.00 0.00 1.75
405 407 3.197983 GCCGGGGACTAGCAATAATCTAT 59.802 47.826 2.18 0.00 0.00 1.98
406 408 2.565834 GCCGGGGACTAGCAATAATCTA 59.434 50.000 2.18 0.00 0.00 1.98
407 409 1.348036 GCCGGGGACTAGCAATAATCT 59.652 52.381 2.18 0.00 0.00 2.40
408 410 1.610886 GGCCGGGGACTAGCAATAATC 60.611 57.143 2.18 0.00 0.00 1.75
409 411 0.400594 GGCCGGGGACTAGCAATAAT 59.599 55.000 2.18 0.00 0.00 1.28
410 412 1.702022 GGGCCGGGGACTAGCAATAA 61.702 60.000 2.18 0.00 0.00 1.40
484 486 2.125773 ACTCGGAGGGGTATATAGCG 57.874 55.000 10.23 0.00 0.00 4.26
506 508 3.865745 GTGTGATATTTCTGTGGACGAGG 59.134 47.826 0.00 0.00 0.00 4.63
599 601 5.814783 AGAAATTAGTACGCGTATTCGACT 58.185 37.500 23.56 18.89 39.71 4.18
625 630 7.810658 AGTTCCATTTTATAGAATATGCAGCG 58.189 34.615 0.00 0.00 0.00 5.18
639 644 3.068873 ACGCTGCCAAAAGTTCCATTTTA 59.931 39.130 0.00 0.00 31.29 1.52
659 664 5.942872 AGCAAATCTTTCCACATAAAGACG 58.057 37.500 1.41 0.00 45.60 4.18
711 716 7.940850 TGTTCAAGAAGAGAAAAATTACTGGG 58.059 34.615 0.00 0.00 0.00 4.45
719 724 5.418840 AGTTGGCTGTTCAAGAAGAGAAAAA 59.581 36.000 10.74 0.00 33.97 1.94
720 725 4.949856 AGTTGGCTGTTCAAGAAGAGAAAA 59.050 37.500 10.74 1.91 33.97 2.29
721 726 4.336433 CAGTTGGCTGTTCAAGAAGAGAAA 59.664 41.667 10.74 2.22 37.92 2.52
722 727 3.879295 CAGTTGGCTGTTCAAGAAGAGAA 59.121 43.478 10.74 0.00 37.92 2.87
723 728 3.134623 TCAGTTGGCTGTTCAAGAAGAGA 59.865 43.478 10.74 0.00 43.05 3.10
724 729 3.249559 GTCAGTTGGCTGTTCAAGAAGAG 59.750 47.826 2.85 2.85 43.05 2.85
725 730 3.206150 GTCAGTTGGCTGTTCAAGAAGA 58.794 45.455 0.00 0.00 43.05 2.87
726 731 2.945008 TGTCAGTTGGCTGTTCAAGAAG 59.055 45.455 0.00 0.00 43.05 2.85
727 732 2.997980 TGTCAGTTGGCTGTTCAAGAA 58.002 42.857 0.00 0.00 43.05 2.52
738 746 2.480419 GTCCACTTTCGATGTCAGTTGG 59.520 50.000 0.00 0.00 0.00 3.77
762 770 2.668632 CAAGGGGCCTGAGCGTAA 59.331 61.111 0.84 0.00 41.24 3.18
797 837 2.046314 CTTCGACCGGGGTGCATT 60.046 61.111 6.32 0.00 0.00 3.56
859 899 7.793927 TTTTTATTTTGTTGGGCTAAGGTTG 57.206 32.000 0.00 0.00 0.00 3.77
1299 1346 2.490217 CGGTACCTCCTGCTCACG 59.510 66.667 10.90 0.00 0.00 4.35
1483 1530 5.005875 GCAAAGCTTCTATTCGTTCTCTACC 59.994 44.000 0.00 0.00 0.00 3.18
1537 1584 4.537015 TCTTGATCTACGCGATACACATG 58.463 43.478 15.93 9.62 30.84 3.21
1662 1712 6.040955 TCGATCTAAGCACAAGGTATTCATCT 59.959 38.462 0.00 0.00 0.00 2.90
1760 1813 3.372206 CACTACAATGAGGAGAAAAGGCG 59.628 47.826 0.00 0.00 0.00 5.52
1779 1832 9.555727 ACAGTACAATACAGTGTTAAAATCACT 57.444 29.630 0.00 0.00 45.43 3.41
1827 1880 8.597662 ACAAATCAAATTCCATTTCAAGTCTG 57.402 30.769 0.00 0.00 0.00 3.51
1889 1942 5.762179 AGATTGAACAGGTGGAATAGACA 57.238 39.130 0.00 0.00 0.00 3.41
1902 1955 5.087323 ACAGAGGGAGTAGAAGATTGAACA 58.913 41.667 0.00 0.00 0.00 3.18
1903 1956 5.669164 ACAGAGGGAGTAGAAGATTGAAC 57.331 43.478 0.00 0.00 0.00 3.18
1914 1967 9.310449 GGAGTATATTTCATTACAGAGGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
1915 1968 7.235812 GGGAGTATATTTCATTACAGAGGGAGT 59.764 40.741 0.00 0.00 0.00 3.85
1916 1969 7.456269 AGGGAGTATATTTCATTACAGAGGGAG 59.544 40.741 0.00 0.00 0.00 4.30
1917 1970 7.313731 AGGGAGTATATTTCATTACAGAGGGA 58.686 38.462 0.00 0.00 0.00 4.20
1918 1971 7.310734 GGAGGGAGTATATTTCATTACAGAGGG 60.311 44.444 0.00 0.00 0.00 4.30
1919 1972 7.456269 AGGAGGGAGTATATTTCATTACAGAGG 59.544 40.741 0.00 0.00 0.00 3.69
1920 1973 8.429237 AGGAGGGAGTATATTTCATTACAGAG 57.571 38.462 0.00 0.00 0.00 3.35
1921 1974 8.798975 AAGGAGGGAGTATATTTCATTACAGA 57.201 34.615 0.00 0.00 0.00 3.41
1922 1975 9.495572 GAAAGGAGGGAGTATATTTCATTACAG 57.504 37.037 0.00 0.00 0.00 2.74
1923 1976 8.998814 TGAAAGGAGGGAGTATATTTCATTACA 58.001 33.333 0.00 0.00 33.16 2.41
1926 1979 8.953665 AGATGAAAGGAGGGAGTATATTTCATT 58.046 33.333 11.09 1.82 43.62 2.57
1927 1980 8.517323 AGATGAAAGGAGGGAGTATATTTCAT 57.483 34.615 9.92 9.92 45.25 2.57
1928 1981 7.937700 AGATGAAAGGAGGGAGTATATTTCA 57.062 36.000 0.00 0.00 39.96 2.69
1934 1987 8.293216 CCCTATATAGATGAAAGGAGGGAGTAT 58.707 40.741 11.53 0.00 44.48 2.12
1935 1988 7.653503 CCCTATATAGATGAAAGGAGGGAGTA 58.346 42.308 11.53 0.00 44.48 2.59
1936 1989 6.507568 CCCTATATAGATGAAAGGAGGGAGT 58.492 44.000 11.53 0.00 44.48 3.85
1937 1990 5.365314 GCCCTATATAGATGAAAGGAGGGAG 59.635 48.000 11.53 0.00 44.48 4.30
1938 1991 5.281314 GCCCTATATAGATGAAAGGAGGGA 58.719 45.833 11.53 0.00 44.48 4.20
1939 1992 4.410555 GGCCCTATATAGATGAAAGGAGGG 59.589 50.000 11.53 3.52 44.52 4.30
1940 1993 5.284582 AGGCCCTATATAGATGAAAGGAGG 58.715 45.833 11.53 1.87 0.00 4.30
1941 1994 7.979786 TTAGGCCCTATATAGATGAAAGGAG 57.020 40.000 11.53 0.00 0.00 3.69
1942 1995 7.147479 GCATTAGGCCCTATATAGATGAAAGGA 60.147 40.741 11.53 0.00 36.11 3.36
1943 1996 6.995091 GCATTAGGCCCTATATAGATGAAAGG 59.005 42.308 11.53 3.94 36.11 3.11
1944 1997 6.703607 CGCATTAGGCCCTATATAGATGAAAG 59.296 42.308 11.53 0.00 40.31 2.62
1945 1998 6.156256 ACGCATTAGGCCCTATATAGATGAAA 59.844 38.462 11.53 0.10 40.31 2.69
1946 1999 5.661312 ACGCATTAGGCCCTATATAGATGAA 59.339 40.000 11.53 0.00 40.31 2.57
1947 2000 5.208890 ACGCATTAGGCCCTATATAGATGA 58.791 41.667 11.53 0.00 40.31 2.92
1948 2001 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
1949 2002 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
1950 2003 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
1951 2004 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
1952 2005 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
1953 2006 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
1954 2007 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
1955 2008 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
1956 2009 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
1957 2010 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
1958 2011 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
1959 2012 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
1960 2013 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
1961 2014 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
1962 2015 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
1963 2016 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
1964 2017 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
1965 2018 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
1966 2019 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
1967 2020 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
1968 2021 4.461992 TCAAAGTTAGCCTCGAAAAACG 57.538 40.909 0.00 0.00 44.09 3.60
1969 2022 5.997385 TGATCAAAGTTAGCCTCGAAAAAC 58.003 37.500 0.00 0.00 0.00 2.43
1970 2023 6.627395 TTGATCAAAGTTAGCCTCGAAAAA 57.373 33.333 5.45 0.00 0.00 1.94
1971 2024 6.627395 TTTGATCAAAGTTAGCCTCGAAAA 57.373 33.333 16.91 0.00 0.00 2.29
1972 2025 6.206634 ACATTTGATCAAAGTTAGCCTCGAAA 59.793 34.615 24.17 0.00 33.32 3.46
1973 2026 5.705441 ACATTTGATCAAAGTTAGCCTCGAA 59.295 36.000 24.17 0.00 33.32 3.71
1974 2027 5.245531 ACATTTGATCAAAGTTAGCCTCGA 58.754 37.500 24.17 0.00 33.32 4.04
1975 2028 5.551760 ACATTTGATCAAAGTTAGCCTCG 57.448 39.130 24.17 7.97 33.32 4.63
1976 2029 8.268850 TCTAACATTTGATCAAAGTTAGCCTC 57.731 34.615 33.31 1.51 39.10 4.70
1977 2030 7.885399 ACTCTAACATTTGATCAAAGTTAGCCT 59.115 33.333 33.31 25.93 39.10 4.58
1978 2031 8.045176 ACTCTAACATTTGATCAAAGTTAGCC 57.955 34.615 33.31 1.43 39.10 3.93
2008 2061 9.467258 GCTTTGTGTAAATTGCATGTCATATAT 57.533 29.630 0.00 0.00 0.00 0.86
2009 2062 8.465201 TGCTTTGTGTAAATTGCATGTCATATA 58.535 29.630 0.00 0.00 0.00 0.86
2010 2063 7.321908 TGCTTTGTGTAAATTGCATGTCATAT 58.678 30.769 0.00 0.00 0.00 1.78
2011 2064 6.685657 TGCTTTGTGTAAATTGCATGTCATA 58.314 32.000 0.00 0.00 0.00 2.15
2012 2065 5.539979 TGCTTTGTGTAAATTGCATGTCAT 58.460 33.333 0.00 0.00 0.00 3.06
2013 2066 4.941657 TGCTTTGTGTAAATTGCATGTCA 58.058 34.783 0.00 0.00 0.00 3.58
2014 2067 6.034898 GGTATGCTTTGTGTAAATTGCATGTC 59.965 38.462 8.29 2.58 37.86 3.06
2015 2068 5.868801 GGTATGCTTTGTGTAAATTGCATGT 59.131 36.000 8.29 0.00 37.86 3.21
2016 2069 5.004630 CGGTATGCTTTGTGTAAATTGCATG 59.995 40.000 8.29 0.00 37.86 4.06
2017 2070 5.101628 CGGTATGCTTTGTGTAAATTGCAT 58.898 37.500 0.00 0.00 39.52 3.96
2018 2071 4.022762 ACGGTATGCTTTGTGTAAATTGCA 60.023 37.500 0.00 0.00 33.33 4.08
2019 2072 4.481463 ACGGTATGCTTTGTGTAAATTGC 58.519 39.130 0.00 0.00 0.00 3.56
2020 2073 5.694816 TGACGGTATGCTTTGTGTAAATTG 58.305 37.500 0.00 0.00 0.00 2.32
2021 2074 5.950758 TGACGGTATGCTTTGTGTAAATT 57.049 34.783 0.00 0.00 0.00 1.82
2022 2075 5.950758 TTGACGGTATGCTTTGTGTAAAT 57.049 34.783 0.00 0.00 0.00 1.40
2023 2076 5.752892 TTTGACGGTATGCTTTGTGTAAA 57.247 34.783 0.00 0.00 0.00 2.01
2024 2077 5.950758 ATTTGACGGTATGCTTTGTGTAA 57.049 34.783 0.00 0.00 0.00 2.41
2025 2078 6.411630 GTATTTGACGGTATGCTTTGTGTA 57.588 37.500 0.00 0.00 0.00 2.90
2026 2079 5.291293 GTATTTGACGGTATGCTTTGTGT 57.709 39.130 0.00 0.00 0.00 3.72
2040 2093 5.581085 AGCTCCTTTCACATACGTATTTGAC 59.419 40.000 21.01 10.63 0.00 3.18
2041 2094 5.730550 AGCTCCTTTCACATACGTATTTGA 58.269 37.500 18.16 18.16 0.00 2.69
2042 2095 6.422776 AAGCTCCTTTCACATACGTATTTG 57.577 37.500 14.27 14.27 0.00 2.32
2043 2096 7.073342 GAAAGCTCCTTTCACATACGTATTT 57.927 36.000 5.03 0.00 46.23 1.40
2044 2097 6.663944 GAAAGCTCCTTTCACATACGTATT 57.336 37.500 5.03 0.00 46.23 1.89
2089 2142 9.481340 GACAAGATTAATAGTGCATGAGATGTA 57.519 33.333 0.00 0.00 0.00 2.29
2090 2143 7.989170 TGACAAGATTAATAGTGCATGAGATGT 59.011 33.333 0.00 0.00 0.00 3.06
2091 2144 8.374327 TGACAAGATTAATAGTGCATGAGATG 57.626 34.615 0.00 0.00 0.00 2.90
2092 2145 8.969260 TTGACAAGATTAATAGTGCATGAGAT 57.031 30.769 0.00 0.00 0.00 2.75
2093 2146 8.969260 ATTGACAAGATTAATAGTGCATGAGA 57.031 30.769 0.00 0.00 0.00 3.27
2095 2148 9.836864 ACTATTGACAAGATTAATAGTGCATGA 57.163 29.630 0.00 0.00 42.73 3.07
2105 2158 9.715121 ACCGTCTTTAACTATTGACAAGATTAA 57.285 29.630 0.00 0.00 0.00 1.40
2106 2159 9.362539 GACCGTCTTTAACTATTGACAAGATTA 57.637 33.333 0.00 0.00 0.00 1.75
2107 2160 8.095169 AGACCGTCTTTAACTATTGACAAGATT 58.905 33.333 0.00 0.00 0.00 2.40
2108 2161 7.612677 AGACCGTCTTTAACTATTGACAAGAT 58.387 34.615 0.00 0.00 0.00 2.40
2109 2162 6.989659 AGACCGTCTTTAACTATTGACAAGA 58.010 36.000 0.00 0.00 0.00 3.02
2110 2163 7.384115 TCAAGACCGTCTTTAACTATTGACAAG 59.616 37.037 11.24 0.00 33.78 3.16
2111 2164 7.211573 TCAAGACCGTCTTTAACTATTGACAA 58.788 34.615 11.24 0.00 33.78 3.18
2112 2165 6.751157 TCAAGACCGTCTTTAACTATTGACA 58.249 36.000 11.24 0.00 33.78 3.58
2113 2166 7.647907 TTCAAGACCGTCTTTAACTATTGAC 57.352 36.000 11.24 0.00 33.78 3.18
2114 2167 8.665643 TTTTCAAGACCGTCTTTAACTATTGA 57.334 30.769 11.24 1.39 33.78 2.57
2115 2168 9.893305 ATTTTTCAAGACCGTCTTTAACTATTG 57.107 29.630 11.24 0.00 33.78 1.90
2116 2169 9.893305 CATTTTTCAAGACCGTCTTTAACTATT 57.107 29.630 11.24 0.00 33.78 1.73
2117 2170 9.280174 TCATTTTTCAAGACCGTCTTTAACTAT 57.720 29.630 11.24 3.87 33.78 2.12
2118 2171 8.665643 TCATTTTTCAAGACCGTCTTTAACTA 57.334 30.769 11.24 1.82 33.78 2.24
2119 2172 7.562454 TCATTTTTCAAGACCGTCTTTAACT 57.438 32.000 11.24 0.00 33.78 2.24
2120 2173 8.797266 ATTCATTTTTCAAGACCGTCTTTAAC 57.203 30.769 11.24 0.00 33.78 2.01
2123 2176 8.082242 CCTAATTCATTTTTCAAGACCGTCTTT 58.918 33.333 11.24 0.00 33.78 2.52
2124 2177 7.593825 CCTAATTCATTTTTCAAGACCGTCTT 58.406 34.615 8.03 8.03 37.14 3.01
2125 2178 6.349363 GCCTAATTCATTTTTCAAGACCGTCT 60.349 38.462 0.00 0.00 0.00 4.18
2126 2179 5.800438 GCCTAATTCATTTTTCAAGACCGTC 59.200 40.000 0.00 0.00 0.00 4.79
2127 2180 5.476945 AGCCTAATTCATTTTTCAAGACCGT 59.523 36.000 0.00 0.00 0.00 4.83
2128 2181 5.954335 AGCCTAATTCATTTTTCAAGACCG 58.046 37.500 0.00 0.00 0.00 4.79
2129 2182 7.163001 AGAGCCTAATTCATTTTTCAAGACC 57.837 36.000 0.00 0.00 0.00 3.85
2137 2190 9.512588 CCATCTGTATAGAGCCTAATTCATTTT 57.487 33.333 0.00 0.00 36.14 1.82
2138 2191 8.884323 TCCATCTGTATAGAGCCTAATTCATTT 58.116 33.333 0.00 0.00 36.14 2.32
2139 2192 8.441311 TCCATCTGTATAGAGCCTAATTCATT 57.559 34.615 0.00 0.00 36.14 2.57
2140 2193 8.441311 TTCCATCTGTATAGAGCCTAATTCAT 57.559 34.615 0.00 0.00 36.14 2.57
2141 2194 7.038729 CCTTCCATCTGTATAGAGCCTAATTCA 60.039 40.741 0.00 0.00 36.14 2.57
2142 2195 7.179338 TCCTTCCATCTGTATAGAGCCTAATTC 59.821 40.741 0.00 0.00 36.14 2.17
2143 2196 7.019388 TCCTTCCATCTGTATAGAGCCTAATT 58.981 38.462 0.00 0.00 36.14 1.40
2144 2197 6.565974 TCCTTCCATCTGTATAGAGCCTAAT 58.434 40.000 0.00 0.00 36.14 1.73
2145 2198 5.965486 TCCTTCCATCTGTATAGAGCCTAA 58.035 41.667 0.00 0.00 36.14 2.69
2146 2199 5.313506 TCTCCTTCCATCTGTATAGAGCCTA 59.686 44.000 0.00 0.00 36.14 3.93
2147 2200 4.107149 TCTCCTTCCATCTGTATAGAGCCT 59.893 45.833 0.00 0.00 36.14 4.58
2148 2201 4.411927 TCTCCTTCCATCTGTATAGAGCC 58.588 47.826 0.00 0.00 36.14 4.70
2149 2202 6.041523 ACTTTCTCCTTCCATCTGTATAGAGC 59.958 42.308 0.00 0.00 36.14 4.09
2150 2203 7.595819 ACTTTCTCCTTCCATCTGTATAGAG 57.404 40.000 0.00 0.00 36.14 2.43
2151 2204 9.137459 CTTACTTTCTCCTTCCATCTGTATAGA 57.863 37.037 0.00 0.00 37.35 1.98
2152 2205 9.137459 TCTTACTTTCTCCTTCCATCTGTATAG 57.863 37.037 0.00 0.00 0.00 1.31
2153 2206 9.137459 CTCTTACTTTCTCCTTCCATCTGTATA 57.863 37.037 0.00 0.00 0.00 1.47
2154 2207 7.621683 ACTCTTACTTTCTCCTTCCATCTGTAT 59.378 37.037 0.00 0.00 0.00 2.29
2155 2208 6.954684 ACTCTTACTTTCTCCTTCCATCTGTA 59.045 38.462 0.00 0.00 0.00 2.74
2156 2209 5.782845 ACTCTTACTTTCTCCTTCCATCTGT 59.217 40.000 0.00 0.00 0.00 3.41
2157 2210 6.105333 CACTCTTACTTTCTCCTTCCATCTG 58.895 44.000 0.00 0.00 0.00 2.90
2158 2211 5.782845 ACACTCTTACTTTCTCCTTCCATCT 59.217 40.000 0.00 0.00 0.00 2.90
2159 2212 6.043854 ACACTCTTACTTTCTCCTTCCATC 57.956 41.667 0.00 0.00 0.00 3.51
2160 2213 6.441088 AACACTCTTACTTTCTCCTTCCAT 57.559 37.500 0.00 0.00 0.00 3.41
2161 2214 5.888982 AACACTCTTACTTTCTCCTTCCA 57.111 39.130 0.00 0.00 0.00 3.53
2162 2215 7.668492 TCTAAACACTCTTACTTTCTCCTTCC 58.332 38.462 0.00 0.00 0.00 3.46
2163 2216 9.361315 GATCTAAACACTCTTACTTTCTCCTTC 57.639 37.037 0.00 0.00 0.00 3.46
2164 2217 8.871125 TGATCTAAACACTCTTACTTTCTCCTT 58.129 33.333 0.00 0.00 0.00 3.36
2165 2218 8.423906 TGATCTAAACACTCTTACTTTCTCCT 57.576 34.615 0.00 0.00 0.00 3.69
2166 2219 9.660180 AATGATCTAAACACTCTTACTTTCTCC 57.340 33.333 0.00 0.00 0.00 3.71
2185 2238 9.250624 GCGTTTAGATGACTACTTTAATGATCT 57.749 33.333 0.00 0.00 0.00 2.75
2186 2239 9.250624 AGCGTTTAGATGACTACTTTAATGATC 57.749 33.333 0.00 0.00 0.00 2.92
2187 2240 9.250624 GAGCGTTTAGATGACTACTTTAATGAT 57.749 33.333 0.00 0.00 0.00 2.45
2188 2241 8.467598 AGAGCGTTTAGATGACTACTTTAATGA 58.532 33.333 0.00 0.00 0.00 2.57
2189 2242 8.635877 AGAGCGTTTAGATGACTACTTTAATG 57.364 34.615 0.00 0.00 0.00 1.90
2208 2261 9.837525 CTCCGTAAACTAATAATATAAGAGCGT 57.162 33.333 0.00 0.00 0.00 5.07
2209 2262 9.286946 CCTCCGTAAACTAATAATATAAGAGCG 57.713 37.037 0.00 0.00 0.00 5.03
2210 2263 9.583765 CCCTCCGTAAACTAATAATATAAGAGC 57.416 37.037 0.00 0.00 0.00 4.09
2216 2269 8.734386 CGTACTCCCTCCGTAAACTAATAATAT 58.266 37.037 0.00 0.00 0.00 1.28
2217 2270 7.719633 ACGTACTCCCTCCGTAAACTAATAATA 59.280 37.037 0.00 0.00 32.22 0.98
2218 2271 6.547510 ACGTACTCCCTCCGTAAACTAATAAT 59.452 38.462 0.00 0.00 32.22 1.28
2219 2272 5.885912 ACGTACTCCCTCCGTAAACTAATAA 59.114 40.000 0.00 0.00 32.22 1.40
2220 2273 5.437060 ACGTACTCCCTCCGTAAACTAATA 58.563 41.667 0.00 0.00 32.22 0.98
2221 2274 4.273318 ACGTACTCCCTCCGTAAACTAAT 58.727 43.478 0.00 0.00 32.22 1.73
2222 2275 3.686016 ACGTACTCCCTCCGTAAACTAA 58.314 45.455 0.00 0.00 32.22 2.24
2223 2276 3.350219 ACGTACTCCCTCCGTAAACTA 57.650 47.619 0.00 0.00 32.22 2.24
2224 2277 2.206576 ACGTACTCCCTCCGTAAACT 57.793 50.000 0.00 0.00 32.22 2.66
2225 2278 4.639135 AATACGTACTCCCTCCGTAAAC 57.361 45.455 0.00 0.00 40.08 2.01
2226 2279 5.437060 AGTAATACGTACTCCCTCCGTAAA 58.563 41.667 0.00 0.00 38.84 2.01
2227 2280 5.036117 AGTAATACGTACTCCCTCCGTAA 57.964 43.478 0.00 0.00 38.84 3.18
2228 2281 4.689612 AGTAATACGTACTCCCTCCGTA 57.310 45.455 0.00 0.00 38.84 4.02
2229 2282 3.567478 AGTAATACGTACTCCCTCCGT 57.433 47.619 0.00 0.00 38.84 4.69
2230 2283 4.636249 ACTAGTAATACGTACTCCCTCCG 58.364 47.826 0.00 0.00 42.37 4.63
2231 2284 6.525629 TGTACTAGTAATACGTACTCCCTCC 58.474 44.000 3.61 0.00 42.37 4.30
2232 2285 8.338986 GTTTGTACTAGTAATACGTACTCCCTC 58.661 40.741 3.61 0.00 42.37 4.30
2233 2286 7.011482 CGTTTGTACTAGTAATACGTACTCCCT 59.989 40.741 17.72 0.00 42.37 4.20
2234 2287 7.011109 TCGTTTGTACTAGTAATACGTACTCCC 59.989 40.741 21.84 3.37 42.37 4.30
2235 2288 7.906160 TCGTTTGTACTAGTAATACGTACTCC 58.094 38.462 21.84 3.76 42.37 3.85
2236 2289 9.574401 GATCGTTTGTACTAGTAATACGTACTC 57.426 37.037 21.84 16.27 42.37 2.59
2237 2290 9.098355 TGATCGTTTGTACTAGTAATACGTACT 57.902 33.333 21.84 0.00 45.42 2.73
2238 2291 9.362911 CTGATCGTTTGTACTAGTAATACGTAC 57.637 37.037 21.84 18.27 35.32 3.67
2300 2356 3.717400 CGGAGCTAGCTACTCATTTCA 57.283 47.619 24.49 0.00 35.79 2.69
2321 2377 1.796355 CGATCAGGCCGTATACGCG 60.796 63.158 19.86 3.53 38.18 6.01
2391 2479 0.178873 ACCCAGTTTCCCTCTAGGCA 60.179 55.000 0.00 0.00 34.51 4.75
2395 2483 3.028850 CGTGATACCCAGTTTCCCTCTA 58.971 50.000 0.00 0.00 0.00 2.43
2396 2484 1.831736 CGTGATACCCAGTTTCCCTCT 59.168 52.381 0.00 0.00 0.00 3.69
2397 2485 2.311124 CGTGATACCCAGTTTCCCTC 57.689 55.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.