Multiple sequence alignment - TraesCS7D01G272500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G272500 chr7D 100.000 5504 0 0 1 5504 262738999 262733496 0.000000e+00 10165.0
1 TraesCS7D01G272500 chr7D 85.408 466 58 10 77 537 262738463 262738923 4.990000e-130 475.0
2 TraesCS7D01G272500 chr7D 88.462 260 29 1 308 566 619818619 619818360 4.140000e-81 313.0
3 TraesCS7D01G272500 chr7D 90.558 233 18 3 77 307 115000883 115000653 6.930000e-79 305.0
4 TraesCS7D01G272500 chr7D 87.692 260 30 2 308 566 125429007 125429265 8.960000e-78 302.0
5 TraesCS7D01G272500 chr7D 98.193 166 2 1 3829 3993 474079449 474079614 6.980000e-74 289.0
6 TraesCS7D01G272500 chr7D 97.076 171 4 1 3829 3998 622230090 622230260 2.510000e-73 287.0
7 TraesCS7D01G272500 chr7D 100.000 35 0 0 4 38 412232508 412232542 1.280000e-06 65.8
8 TraesCS7D01G272500 chr7A 95.205 3149 114 13 711 3840 285610433 285607303 0.000000e+00 4944.0
9 TraesCS7D01G272500 chr7A 91.348 1491 71 20 3987 5470 285607324 285605885 0.000000e+00 1986.0
10 TraesCS7D01G272500 chr7A 98.160 163 3 0 3831 3993 176249538 176249376 9.020000e-73 285.0
11 TraesCS7D01G272500 chr7A 97.674 43 1 0 711 753 285616056 285616014 2.130000e-09 75.0
12 TraesCS7D01G272500 chr7B 90.876 2707 136 28 703 3349 240964527 240967182 0.000000e+00 3528.0
13 TraesCS7D01G272500 chr7B 94.352 1027 50 5 4050 5073 240967762 240968783 0.000000e+00 1568.0
14 TraesCS7D01G272500 chr7B 91.553 438 32 2 3356 3789 240967328 240967764 2.840000e-167 599.0
15 TraesCS7D01G272500 chr7B 95.200 375 15 2 5033 5405 240968780 240969153 1.710000e-164 590.0
16 TraesCS7D01G272500 chr7B 94.375 160 6 2 5177 5334 240969312 240969154 5.510000e-60 243.0
17 TraesCS7D01G272500 chr7B 92.500 40 1 1 1 38 180481378 180481417 7.700000e-04 56.5
18 TraesCS7D01G272500 chr5D 83.838 495 70 9 77 566 103996082 103995593 3.880000e-126 462.0
19 TraesCS7D01G272500 chr5D 90.987 233 21 0 75 307 341691028 341690796 1.150000e-81 315.0
20 TraesCS7D01G272500 chr5D 100.000 28 0 0 5465 5492 557889514 557889541 1.000000e-02 52.8
21 TraesCS7D01G272500 chr2D 83.525 522 54 20 77 566 69526443 69525922 5.020000e-125 459.0
22 TraesCS7D01G272500 chr2D 87.931 58 6 1 618 675 512166064 512166120 3.560000e-07 67.6
23 TraesCS7D01G272500 chr2D 97.143 35 1 0 618 652 611165047 611165013 5.950000e-05 60.2
24 TraesCS7D01G272500 chr2A 83.636 495 67 11 77 564 631780518 631781005 2.340000e-123 453.0
25 TraesCS7D01G272500 chr2A 82.353 493 81 5 77 566 631780978 631780489 1.830000e-114 424.0
26 TraesCS7D01G272500 chr2A 87.850 107 11 2 1010 1115 31911301 31911406 2.080000e-24 124.0
27 TraesCS7D01G272500 chr2A 81.553 103 19 0 573 675 472272893 472272995 9.820000e-13 86.1
28 TraesCS7D01G272500 chr2A 97.297 37 1 0 4012 4048 385002748 385002784 4.600000e-06 63.9
29 TraesCS7D01G272500 chr4B 80.725 524 62 19 77 566 464538152 464538670 6.730000e-99 372.0
30 TraesCS7D01G272500 chr4B 90.625 64 3 3 3987 4048 416882289 416882227 1.270000e-11 82.4
31 TraesCS7D01G272500 chr4B 97.143 35 1 0 4 38 619940592 619940558 5.950000e-05 60.2
32 TraesCS7D01G272500 chr1D 80.534 524 63 20 77 566 87090068 87090586 3.130000e-97 366.0
33 TraesCS7D01G272500 chr2B 91.453 234 18 2 75 307 765818247 765818479 2.470000e-83 320.0
34 TraesCS7D01G272500 chr2B 86.916 107 12 2 1010 1115 49384443 49384338 9.690000e-23 119.0
35 TraesCS7D01G272500 chr1A 90.598 234 20 2 75 307 578235087 578235319 5.350000e-80 309.0
36 TraesCS7D01G272500 chr1A 97.576 165 3 1 3829 3992 420385063 420384899 1.170000e-71 281.0
37 TraesCS7D01G272500 chr1A 97.143 35 1 0 4 38 249129906 249129872 5.950000e-05 60.2
38 TraesCS7D01G272500 chr3D 87.405 262 29 4 308 566 84918419 84918159 1.160000e-76 298.0
39 TraesCS7D01G272500 chr3D 87.692 65 6 2 3987 4050 80943229 80943292 2.130000e-09 75.0
40 TraesCS7D01G272500 chr3D 97.500 40 1 0 4009 4048 524224019 524223980 9.890000e-08 69.4
41 TraesCS7D01G272500 chr6A 97.633 169 3 1 3829 3996 173329315 173329147 6.980000e-74 289.0
42 TraesCS7D01G272500 chr6A 95.238 42 2 0 4009 4050 613210102 613210061 3.560000e-07 67.6
43 TraesCS7D01G272500 chr6A 92.857 42 1 1 4019 4058 441426991 441426950 5.950000e-05 60.2
44 TraesCS7D01G272500 chr6A 100.000 28 0 0 5469 5496 598072184 598072157 1.000000e-02 52.8
45 TraesCS7D01G272500 chr3B 97.605 167 2 2 3829 3993 747780476 747780310 9.020000e-73 285.0
46 TraesCS7D01G272500 chr6D 97.590 166 3 1 3829 3993 153190936 153190771 3.250000e-72 283.0
47 TraesCS7D01G272500 chr6D 97.590 166 3 1 3829 3993 422907595 422907430 3.250000e-72 283.0
48 TraesCS7D01G272500 chr1B 93.989 183 8 3 3829 4009 49198830 49199011 1.950000e-69 274.0
49 TraesCS7D01G272500 chr4A 100.000 34 0 0 5 38 73446748 73446781 4.600000e-06 63.9
50 TraesCS7D01G272500 chr4A 100.000 33 0 0 6 38 164447344 164447312 1.660000e-05 62.1
51 TraesCS7D01G272500 chr6B 92.857 42 2 1 4015 4056 698041770 698041730 5.950000e-05 60.2
52 TraesCS7D01G272500 chr4D 97.143 35 1 0 5 39 499229204 499229170 5.950000e-05 60.2
53 TraesCS7D01G272500 chr4D 92.500 40 3 0 4011 4050 203098160 203098121 2.140000e-04 58.4
54 TraesCS7D01G272500 chrUn 97.059 34 1 0 5 38 270107534 270107501 2.140000e-04 58.4
55 TraesCS7D01G272500 chr5B 94.595 37 2 0 2 38 420712844 420712808 2.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G272500 chr7D 262733496 262738999 5503 True 10165.00 10165 100.00000 1 5504 1 chr7D.!!$R2 5503
1 TraesCS7D01G272500 chr7A 285605885 285610433 4548 True 3465.00 4944 93.27650 711 5470 2 chr7A.!!$R3 4759
2 TraesCS7D01G272500 chr7B 240964527 240969153 4626 False 1571.25 3528 92.99525 703 5405 4 chr7B.!!$F2 4702
3 TraesCS7D01G272500 chr2D 69525922 69526443 521 True 459.00 459 83.52500 77 566 1 chr2D.!!$R1 489
4 TraesCS7D01G272500 chr4B 464538152 464538670 518 False 372.00 372 80.72500 77 566 1 chr4B.!!$F1 489
5 TraesCS7D01G272500 chr1D 87090068 87090586 518 False 366.00 366 80.53400 77 566 1 chr1D.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1029 0.031449 CCCGCCGATCTCTTCTCTTC 59.969 60.000 0.00 0.0 0.00 2.87 F
1377 1449 1.004927 CGATTTCGGACGAGGCAATTC 60.005 52.381 0.00 0.0 35.37 2.17 F
2548 2655 0.668535 GCCGTTCCTTTCTTTGCTGT 59.331 50.000 0.00 0.0 0.00 4.40 F
3593 3851 0.104462 TAGCACTATCTGGGGGCCAT 60.104 55.000 4.39 0.0 30.82 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2046 0.509929 CATCATACGTGCCAGCATCG 59.490 55.0 0.00 11.30 0.00 3.84 R
2718 2825 3.201290 GGCTCACATATGTGGAAGAGTG 58.799 50.0 30.56 15.20 45.65 3.51 R
4280 4538 0.173708 GTCCTGCAGTACGGAAGAGG 59.826 60.0 13.81 1.62 0.00 3.69 R
5217 5519 0.250727 GTCAAGGCAAGCCCACTACA 60.251 55.0 7.62 0.00 36.58 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.979789 TGCGTGCGGACATGAAAT 58.020 50.000 8.11 0.00 34.49 2.17
28 29 1.348250 CATGAAATGGGTCGACGCG 59.652 57.895 25.18 3.53 41.79 6.01
29 30 1.079405 ATGAAATGGGTCGACGCGT 60.079 52.632 25.18 22.95 0.00 6.01
30 31 0.672401 ATGAAATGGGTCGACGCGTT 60.672 50.000 28.47 28.47 39.31 4.84
31 32 1.131826 GAAATGGGTCGACGCGTTG 59.868 57.895 32.67 20.76 37.94 4.10
32 33 2.235536 GAAATGGGTCGACGCGTTGG 62.236 60.000 32.67 15.24 37.94 3.77
33 34 2.718747 AAATGGGTCGACGCGTTGGA 62.719 55.000 32.67 17.35 37.94 3.53
34 35 3.927163 ATGGGTCGACGCGTTGGAC 62.927 63.158 26.61 26.61 0.00 4.02
46 47 2.399396 CGTTGGACGCAGACAAATTT 57.601 45.000 0.00 0.00 33.65 1.82
47 48 2.043411 CGTTGGACGCAGACAAATTTG 58.957 47.619 16.67 16.67 33.65 2.32
48 49 2.286713 CGTTGGACGCAGACAAATTTGA 60.287 45.455 24.64 0.00 33.65 2.69
49 50 3.042887 GTTGGACGCAGACAAATTTGAC 58.957 45.455 24.64 18.07 31.25 3.18
50 51 2.571212 TGGACGCAGACAAATTTGACT 58.429 42.857 24.64 20.06 33.62 3.41
51 52 2.548057 TGGACGCAGACAAATTTGACTC 59.452 45.455 24.64 12.39 31.07 3.36
52 53 2.411547 GGACGCAGACAAATTTGACTCG 60.412 50.000 24.64 24.73 31.07 4.18
53 54 1.069906 ACGCAGACAAATTTGACTCGC 60.070 47.619 24.64 23.05 31.07 5.03
54 55 1.595609 GCAGACAAATTTGACTCGCG 58.404 50.000 24.64 12.50 31.07 5.87
55 56 1.194547 GCAGACAAATTTGACTCGCGA 59.805 47.619 24.64 9.26 31.07 5.87
56 57 2.827555 CAGACAAATTTGACTCGCGAC 58.172 47.619 24.64 0.00 31.07 5.19
57 58 1.798813 AGACAAATTTGACTCGCGACC 59.201 47.619 24.64 0.00 0.00 4.79
58 59 0.872388 ACAAATTTGACTCGCGACCC 59.128 50.000 24.64 0.00 0.00 4.46
59 60 0.168128 CAAATTTGACTCGCGACCCC 59.832 55.000 13.08 0.00 0.00 4.95
60 61 1.296056 AAATTTGACTCGCGACCCCG 61.296 55.000 3.71 0.00 39.16 5.73
61 62 2.162338 AATTTGACTCGCGACCCCGA 62.162 55.000 3.71 0.00 38.22 5.14
67 68 4.047059 TCGCGACCCCGAGAACAC 62.047 66.667 3.71 0.00 41.42 3.32
69 70 3.998672 GCGACCCCGAGAACACCA 61.999 66.667 0.00 0.00 38.22 4.17
70 71 2.978824 CGACCCCGAGAACACCAT 59.021 61.111 0.00 0.00 38.22 3.55
71 72 1.295423 CGACCCCGAGAACACCATT 59.705 57.895 0.00 0.00 38.22 3.16
72 73 0.321298 CGACCCCGAGAACACCATTT 60.321 55.000 0.00 0.00 38.22 2.32
73 74 1.165270 GACCCCGAGAACACCATTTG 58.835 55.000 0.00 0.00 0.00 2.32
74 75 0.476771 ACCCCGAGAACACCATTTGT 59.523 50.000 0.00 0.00 41.74 2.83
75 76 1.700739 ACCCCGAGAACACCATTTGTA 59.299 47.619 0.00 0.00 37.51 2.41
106 107 8.517878 CATTTCACAAAATGGACTGTCTCTAAT 58.482 33.333 7.85 0.00 45.30 1.73
193 195 1.515088 CTGACTGACAGGCGCTACG 60.515 63.158 7.64 0.00 42.39 3.51
268 270 2.336809 CCTAAGAGCTAGGCGCCG 59.663 66.667 23.20 9.22 41.02 6.46
292 294 3.997223 ACTATACAGTGTAGCGCCTAGCA 60.997 47.826 2.29 0.00 40.43 3.49
294 296 6.728309 ACTATACAGTGTAGCGCCTAGCATT 61.728 44.000 2.29 0.00 40.43 3.56
379 419 2.607892 GGCGGTGCACACTGACTTC 61.608 63.158 20.43 0.00 42.48 3.01
380 420 1.887242 GCGGTGCACACTGACTTCA 60.887 57.895 20.43 0.00 40.06 3.02
397 438 8.105829 ACTGACTTCATAATTTTCAGATCACCT 58.894 33.333 3.99 0.00 37.67 4.00
408 449 1.141881 GATCACCTGGATGCGACGT 59.858 57.895 0.00 0.00 36.00 4.34
416 457 1.141019 GGATGCGACGTTGGCTAGA 59.859 57.895 12.79 0.00 0.00 2.43
446 487 2.435586 GTCAGTCAGGCGCTGCAT 60.436 61.111 7.64 0.00 34.21 3.96
504 546 7.650903 ACTCAAAAAGTCAGCTGAATGAATTTC 59.349 33.333 20.19 2.99 44.21 2.17
510 552 9.688592 AAAGTCAGCTGAATGAATTTCTTTTAG 57.311 29.630 20.19 10.63 42.08 1.85
515 557 9.688592 CAGCTGAATGAATTTCTTTTAGAAACT 57.311 29.630 8.42 0.00 45.83 2.66
566 608 8.776470 CCACAGATTAAAATTGTCAAATTTGCT 58.224 29.630 13.54 0.00 43.63 3.91
578 620 3.852574 CAAATTTGCTTTGAACGCACTG 58.147 40.909 5.01 0.00 45.96 3.66
579 621 1.490621 ATTTGCTTTGAACGCACTGC 58.509 45.000 0.00 0.00 37.07 4.40
580 622 0.527385 TTTGCTTTGAACGCACTGCC 60.527 50.000 0.00 0.00 37.07 4.85
581 623 2.427410 GCTTTGAACGCACTGCCG 60.427 61.111 0.00 0.00 0.00 5.69
582 624 2.892334 GCTTTGAACGCACTGCCGA 61.892 57.895 0.00 0.00 0.00 5.54
583 625 1.082756 CTTTGAACGCACTGCCGAC 60.083 57.895 0.00 0.00 0.00 4.79
584 626 2.443957 CTTTGAACGCACTGCCGACC 62.444 60.000 0.00 0.00 0.00 4.79
585 627 4.980805 TGAACGCACTGCCGACCC 62.981 66.667 0.00 0.00 0.00 4.46
586 628 4.980805 GAACGCACTGCCGACCCA 62.981 66.667 0.00 0.00 0.00 4.51
587 629 4.555709 AACGCACTGCCGACCCAA 62.556 61.111 0.00 0.00 0.00 4.12
588 630 4.555709 ACGCACTGCCGACCCAAA 62.556 61.111 0.00 0.00 0.00 3.28
589 631 3.055719 CGCACTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
590 632 2.625823 CGCACTGCCGACCCAAATT 61.626 57.895 0.00 0.00 0.00 1.82
591 633 1.665442 GCACTGCCGACCCAAATTT 59.335 52.632 0.00 0.00 0.00 1.82
592 634 0.885196 GCACTGCCGACCCAAATTTA 59.115 50.000 0.00 0.00 0.00 1.40
593 635 1.271102 GCACTGCCGACCCAAATTTAA 59.729 47.619 0.00 0.00 0.00 1.52
594 636 2.288518 GCACTGCCGACCCAAATTTAAA 60.289 45.455 0.00 0.00 0.00 1.52
595 637 3.800604 GCACTGCCGACCCAAATTTAAAA 60.801 43.478 0.00 0.00 0.00 1.52
596 638 4.565022 CACTGCCGACCCAAATTTAAAAT 58.435 39.130 0.00 0.00 0.00 1.82
597 639 5.715070 CACTGCCGACCCAAATTTAAAATA 58.285 37.500 0.00 0.00 0.00 1.40
598 640 6.159988 CACTGCCGACCCAAATTTAAAATAA 58.840 36.000 0.00 0.00 0.00 1.40
599 641 6.310224 CACTGCCGACCCAAATTTAAAATAAG 59.690 38.462 0.00 0.00 0.00 1.73
600 642 5.172205 TGCCGACCCAAATTTAAAATAAGC 58.828 37.500 0.00 0.00 0.00 3.09
601 643 4.569162 GCCGACCCAAATTTAAAATAAGCC 59.431 41.667 0.00 0.00 0.00 4.35
602 644 5.725362 CCGACCCAAATTTAAAATAAGCCA 58.275 37.500 0.00 0.00 0.00 4.75
603 645 5.810074 CCGACCCAAATTTAAAATAAGCCAG 59.190 40.000 0.00 0.00 0.00 4.85
604 646 6.350612 CCGACCCAAATTTAAAATAAGCCAGA 60.351 38.462 0.00 0.00 0.00 3.86
605 647 6.530181 CGACCCAAATTTAAAATAAGCCAGAC 59.470 38.462 0.00 0.00 0.00 3.51
606 648 6.394809 ACCCAAATTTAAAATAAGCCAGACG 58.605 36.000 0.00 0.00 0.00 4.18
607 649 6.014925 ACCCAAATTTAAAATAAGCCAGACGT 60.015 34.615 0.00 0.00 0.00 4.34
608 650 6.530181 CCCAAATTTAAAATAAGCCAGACGTC 59.470 38.462 7.70 7.70 0.00 4.34
609 651 6.250527 CCAAATTTAAAATAAGCCAGACGTCG 59.749 38.462 10.46 5.16 0.00 5.12
610 652 4.932268 TTTAAAATAAGCCAGACGTCGG 57.068 40.909 18.30 18.30 0.00 4.79
611 653 1.734163 AAAATAAGCCAGACGTCGGG 58.266 50.000 27.93 27.93 0.00 5.14
617 659 4.742201 CCAGACGTCGGGCTGGTG 62.742 72.222 21.85 6.76 45.21 4.17
618 660 4.742201 CAGACGTCGGGCTGGTGG 62.742 72.222 10.46 0.00 0.00 4.61
633 675 3.166434 TGGCCGACCCAAACAGAT 58.834 55.556 0.00 0.00 41.82 2.90
634 676 2.378211 TGGCCGACCCAAACAGATA 58.622 52.632 0.00 0.00 41.82 1.98
635 677 0.693622 TGGCCGACCCAAACAGATAA 59.306 50.000 0.00 0.00 41.82 1.75
636 678 1.074084 TGGCCGACCCAAACAGATAAA 59.926 47.619 0.00 0.00 41.82 1.40
637 679 2.164338 GGCCGACCCAAACAGATAAAA 58.836 47.619 0.00 0.00 0.00 1.52
638 680 2.559231 GGCCGACCCAAACAGATAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
655 697 3.636282 AAAAACGGACAAAAGCGCTAT 57.364 38.095 12.05 0.00 0.00 2.97
656 698 2.894307 AAACGGACAAAAGCGCTATC 57.106 45.000 12.05 6.33 0.00 2.08
657 699 2.094762 AACGGACAAAAGCGCTATCT 57.905 45.000 12.05 0.00 0.00 1.98
658 700 1.359848 ACGGACAAAAGCGCTATCTG 58.640 50.000 12.05 13.85 0.00 2.90
659 701 1.337823 ACGGACAAAAGCGCTATCTGT 60.338 47.619 12.05 14.76 0.00 3.41
660 702 1.732259 CGGACAAAAGCGCTATCTGTT 59.268 47.619 12.05 0.00 0.00 3.16
661 703 2.159627 CGGACAAAAGCGCTATCTGTTT 59.840 45.455 12.05 3.84 0.00 2.83
662 704 3.492313 GGACAAAAGCGCTATCTGTTTG 58.508 45.455 23.28 23.28 35.72 2.93
663 705 3.492313 GACAAAAGCGCTATCTGTTTGG 58.508 45.455 26.57 12.01 34.28 3.28
664 706 2.228822 ACAAAAGCGCTATCTGTTTGGG 59.771 45.455 26.57 10.48 34.28 4.12
665 707 2.200373 AAAGCGCTATCTGTTTGGGT 57.800 45.000 12.05 0.00 0.00 4.51
666 708 1.739067 AAGCGCTATCTGTTTGGGTC 58.261 50.000 12.05 0.00 0.00 4.46
667 709 0.460284 AGCGCTATCTGTTTGGGTCG 60.460 55.000 8.99 0.00 0.00 4.79
668 710 0.459585 GCGCTATCTGTTTGGGTCGA 60.460 55.000 0.00 0.00 0.00 4.20
669 711 1.278238 CGCTATCTGTTTGGGTCGAC 58.722 55.000 7.13 7.13 0.00 4.20
670 712 1.653151 GCTATCTGTTTGGGTCGACC 58.347 55.000 27.04 27.04 40.81 4.79
684 726 3.550656 GACCCGTTCGAGTTGCTG 58.449 61.111 0.00 0.00 0.00 4.41
685 727 1.300697 GACCCGTTCGAGTTGCTGT 60.301 57.895 0.00 0.00 0.00 4.40
686 728 0.878961 GACCCGTTCGAGTTGCTGTT 60.879 55.000 0.00 0.00 0.00 3.16
687 729 0.390124 ACCCGTTCGAGTTGCTGTTA 59.610 50.000 0.00 0.00 0.00 2.41
688 730 1.068474 CCCGTTCGAGTTGCTGTTAG 58.932 55.000 0.00 0.00 0.00 2.34
689 731 0.438830 CCGTTCGAGTTGCTGTTAGC 59.561 55.000 0.00 0.00 42.82 3.09
690 732 1.419374 CGTTCGAGTTGCTGTTAGCT 58.581 50.000 2.24 0.00 42.97 3.32
691 733 1.125021 CGTTCGAGTTGCTGTTAGCTG 59.875 52.381 0.00 0.00 42.97 4.24
692 734 1.136224 GTTCGAGTTGCTGTTAGCTGC 60.136 52.381 0.00 1.37 42.97 5.25
693 735 0.318441 TCGAGTTGCTGTTAGCTGCT 59.682 50.000 7.57 7.57 42.97 4.24
694 736 0.718343 CGAGTTGCTGTTAGCTGCTC 59.282 55.000 4.91 8.29 42.97 4.26
695 737 1.082690 GAGTTGCTGTTAGCTGCTCC 58.917 55.000 4.91 0.00 42.97 4.70
696 738 0.397941 AGTTGCTGTTAGCTGCTCCA 59.602 50.000 4.91 3.40 42.97 3.86
697 739 0.519077 GTTGCTGTTAGCTGCTCCAC 59.481 55.000 4.91 5.10 42.97 4.02
698 740 0.108396 TTGCTGTTAGCTGCTCCACA 59.892 50.000 4.91 9.90 42.97 4.17
699 741 0.325933 TGCTGTTAGCTGCTCCACAT 59.674 50.000 4.91 0.00 42.97 3.21
700 742 1.554617 TGCTGTTAGCTGCTCCACATA 59.445 47.619 4.91 0.61 42.97 2.29
701 743 1.936547 GCTGTTAGCTGCTCCACATAC 59.063 52.381 4.91 2.72 38.45 2.39
743 785 7.335861 GGAACGAAAACAAACAAAACAAGTA 57.664 32.000 0.00 0.00 0.00 2.24
795 837 2.561419 AGGAGTGTACACATGTAGCGTT 59.439 45.455 27.06 3.48 0.00 4.84
923 971 1.958902 CTGCTGCACCTCTCTCCTCC 61.959 65.000 0.00 0.00 0.00 4.30
956 1006 1.680651 CTCACCTCACCTCGCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
978 1028 1.395826 CCCCGCCGATCTCTTCTCTT 61.396 60.000 0.00 0.00 0.00 2.85
979 1029 0.031449 CCCGCCGATCTCTTCTCTTC 59.969 60.000 0.00 0.00 0.00 2.87
980 1030 1.028905 CCGCCGATCTCTTCTCTTCT 58.971 55.000 0.00 0.00 0.00 2.85
981 1031 2.222886 CCGCCGATCTCTTCTCTTCTA 58.777 52.381 0.00 0.00 0.00 2.10
982 1032 2.225491 CCGCCGATCTCTTCTCTTCTAG 59.775 54.545 0.00 0.00 0.00 2.43
983 1033 2.875933 CGCCGATCTCTTCTCTTCTAGT 59.124 50.000 0.00 0.00 0.00 2.57
984 1034 3.314080 CGCCGATCTCTTCTCTTCTAGTT 59.686 47.826 0.00 0.00 0.00 2.24
985 1035 4.553938 CGCCGATCTCTTCTCTTCTAGTTC 60.554 50.000 0.00 0.00 0.00 3.01
1326 1388 2.737180 CGGCCCGCAGATATCAGT 59.263 61.111 5.32 0.00 0.00 3.41
1377 1449 1.004927 CGATTTCGGACGAGGCAATTC 60.005 52.381 0.00 0.00 35.37 2.17
1471 1543 7.934855 TTATCTAACGAGGAGGATATGGTAC 57.065 40.000 0.00 0.00 0.00 3.34
1482 1554 6.551601 AGGAGGATATGGTACTTAGTTCACAG 59.448 42.308 0.00 0.00 0.00 3.66
1484 1556 7.233757 GGAGGATATGGTACTTAGTTCACAGAT 59.766 40.741 0.00 0.00 0.00 2.90
1486 1558 9.303116 AGGATATGGTACTTAGTTCACAGATAG 57.697 37.037 0.00 0.00 0.00 2.08
1487 1559 9.298250 GGATATGGTACTTAGTTCACAGATAGA 57.702 37.037 0.00 0.00 0.00 1.98
1489 1561 9.869667 ATATGGTACTTAGTTCACAGATAGACT 57.130 33.333 0.00 0.00 0.00 3.24
1529 1601 1.768275 TGAGAAGTTGAGAACTGCCCA 59.232 47.619 0.00 0.00 41.91 5.36
1535 1607 2.371841 AGTTGAGAACTGCCCACACATA 59.628 45.455 0.00 0.00 41.01 2.29
1600 1674 2.829003 CTCGCACCTCGGCCTCTA 60.829 66.667 0.00 0.00 39.05 2.43
1612 1686 4.159879 CCTCGGCCTCTAGAACTTTTCTTA 59.840 45.833 0.00 0.00 41.14 2.10
1637 1711 1.529865 GTGGTGTTTTACAGAGACGGC 59.470 52.381 0.00 0.00 0.00 5.68
1656 1730 3.996363 CGGCTGCTATTATATGCACTTGA 59.004 43.478 0.00 0.00 35.20 3.02
1661 1735 6.426328 GCTGCTATTATATGCACTTGAGAAGT 59.574 38.462 0.00 0.00 44.06 3.01
1908 1983 6.483974 TGTATGGTTACGATTTTGTGTGTCTT 59.516 34.615 0.00 0.00 0.00 3.01
2010 2085 1.065551 GTGAACACAAGAACTGGTGGC 59.934 52.381 13.02 6.06 39.31 5.01
2103 2178 9.702253 ATTGATCTCCTCGGTATGTATTATAGT 57.298 33.333 0.00 0.00 0.00 2.12
2132 2209 7.674348 TCCAATACCCAATCTAGTAGTAGATGG 59.326 40.741 18.79 17.76 44.04 3.51
2335 2441 5.221783 ACTCACGGAAATTAACAGTACCCTT 60.222 40.000 0.00 0.00 0.00 3.95
2340 2446 5.239963 CGGAAATTAACAGTACCCTTGTTGT 59.760 40.000 8.75 0.00 39.03 3.32
2503 2610 5.057819 TGCCAAATCACACGACTAACTAAA 58.942 37.500 0.00 0.00 0.00 1.85
2543 2650 5.784578 ATTGTTAAGCCGTTCCTTTCTTT 57.215 34.783 0.00 0.00 0.00 2.52
2548 2655 0.668535 GCCGTTCCTTTCTTTGCTGT 59.331 50.000 0.00 0.00 0.00 4.40
2693 2800 7.224297 TGAGTTGGCTCTTGTCTAAATTAAGT 58.776 34.615 0.00 0.00 42.13 2.24
2718 2825 9.922305 GTGAGTATTGATTGCTAAAACATCTAC 57.078 33.333 0.00 0.00 0.00 2.59
2763 2870 3.599343 TGCTTCCTATTGTGTACAGCAG 58.401 45.455 0.00 0.00 0.00 4.24
3043 3157 6.385649 TGTTTCTACCTGTCAATGTTTTCC 57.614 37.500 0.00 0.00 0.00 3.13
3074 3188 7.435305 TCTCAAGCAATTGATCAAAATGTGAA 58.565 30.769 13.09 4.83 40.50 3.18
3075 3189 8.092068 TCTCAAGCAATTGATCAAAATGTGAAT 58.908 29.630 13.09 1.21 40.50 2.57
3149 3264 4.116961 CGATTATTTTCTGCACCCGTCTA 58.883 43.478 0.00 0.00 0.00 2.59
3162 3277 3.574396 CACCCGTCTACTCATGTCCATAT 59.426 47.826 0.00 0.00 0.00 1.78
3163 3278 3.574396 ACCCGTCTACTCATGTCCATATG 59.426 47.826 0.00 0.00 0.00 1.78
3322 3437 5.778750 AGGCTTAACTACTCTTACCTTCACA 59.221 40.000 0.00 0.00 0.00 3.58
3338 3453 6.309357 ACCTTCACATATCACCCGTATACTA 58.691 40.000 0.56 0.00 0.00 1.82
3350 3465 3.311966 CCGTATACTAGCCCTTTTACGC 58.688 50.000 0.56 0.00 33.12 4.42
3371 3625 7.416154 ACGCGTTATAGTTATTATTGCATGT 57.584 32.000 5.58 0.00 0.00 3.21
3509 3767 9.388346 GAGACATGTATCTGTACTATTTCTTCG 57.612 37.037 13.23 0.00 0.00 3.79
3593 3851 0.104462 TAGCACTATCTGGGGGCCAT 60.104 55.000 4.39 0.00 30.82 4.40
3640 3898 4.154918 GTGAAGTAGGAGCACCTTTTCATG 59.845 45.833 22.93 0.00 45.36 3.07
3686 3944 4.072839 ACTTTTTCTCTTAGGGAAAGGCG 58.927 43.478 7.38 3.43 35.75 5.52
3788 4046 9.855021 GTTGAATACAAAGCCATAACATTTACT 57.145 29.630 0.00 0.00 37.77 2.24
3829 4087 4.555348 AATTGTCGCGGTTTTGAACTAA 57.445 36.364 6.13 0.00 0.00 2.24
3830 4088 3.595709 TTGTCGCGGTTTTGAACTAAG 57.404 42.857 6.13 0.00 0.00 2.18
3831 4089 1.868498 TGTCGCGGTTTTGAACTAAGG 59.132 47.619 6.13 0.00 0.00 2.69
3832 4090 1.869132 GTCGCGGTTTTGAACTAAGGT 59.131 47.619 6.13 0.00 0.00 3.50
3833 4091 2.288729 GTCGCGGTTTTGAACTAAGGTT 59.711 45.455 6.13 0.00 38.52 3.50
3834 4092 2.288458 TCGCGGTTTTGAACTAAGGTTG 59.712 45.455 6.13 0.00 35.58 3.77
3835 4093 2.288458 CGCGGTTTTGAACTAAGGTTGA 59.712 45.455 0.00 0.00 35.58 3.18
3836 4094 3.242804 CGCGGTTTTGAACTAAGGTTGAA 60.243 43.478 0.00 0.00 35.58 2.69
3837 4095 4.287720 GCGGTTTTGAACTAAGGTTGAAG 58.712 43.478 0.00 0.00 35.58 3.02
3838 4096 4.201980 GCGGTTTTGAACTAAGGTTGAAGT 60.202 41.667 0.00 0.00 35.58 3.01
3839 4097 5.007921 GCGGTTTTGAACTAAGGTTGAAGTA 59.992 40.000 0.00 0.00 35.58 2.24
3840 4098 6.293790 GCGGTTTTGAACTAAGGTTGAAGTAT 60.294 38.462 0.00 0.00 35.58 2.12
3841 4099 7.295930 CGGTTTTGAACTAAGGTTGAAGTATC 58.704 38.462 0.00 0.00 35.58 2.24
3842 4100 7.041644 CGGTTTTGAACTAAGGTTGAAGTATCA 60.042 37.037 0.00 0.00 35.58 2.15
3843 4101 8.074370 GGTTTTGAACTAAGGTTGAAGTATCAC 58.926 37.037 0.00 0.00 34.61 3.06
3844 4102 7.739498 TTTGAACTAAGGTTGAAGTATCACC 57.261 36.000 0.00 0.00 34.61 4.02
3845 4103 6.428083 TGAACTAAGGTTGAAGTATCACCA 57.572 37.500 0.00 0.00 34.61 4.17
3846 4104 6.833041 TGAACTAAGGTTGAAGTATCACCAA 58.167 36.000 0.00 0.00 34.61 3.67
3847 4105 7.284074 TGAACTAAGGTTGAAGTATCACCAAA 58.716 34.615 0.00 0.00 34.61 3.28
3848 4106 7.444183 TGAACTAAGGTTGAAGTATCACCAAAG 59.556 37.037 0.00 0.00 34.61 2.77
3849 4107 7.074653 ACTAAGGTTGAAGTATCACCAAAGA 57.925 36.000 0.00 0.00 34.61 2.52
3850 4108 7.162082 ACTAAGGTTGAAGTATCACCAAAGAG 58.838 38.462 0.00 0.00 34.61 2.85
3851 4109 4.327680 AGGTTGAAGTATCACCAAAGAGC 58.672 43.478 0.00 0.00 34.61 4.09
3852 4110 4.042187 AGGTTGAAGTATCACCAAAGAGCT 59.958 41.667 0.00 0.00 34.61 4.09
3853 4111 5.248477 AGGTTGAAGTATCACCAAAGAGCTA 59.752 40.000 0.00 0.00 34.61 3.32
3854 4112 5.582665 GGTTGAAGTATCACCAAAGAGCTAG 59.417 44.000 0.00 0.00 34.61 3.42
3855 4113 4.759782 TGAAGTATCACCAAAGAGCTAGC 58.240 43.478 6.62 6.62 0.00 3.42
3856 4114 4.467795 TGAAGTATCACCAAAGAGCTAGCT 59.532 41.667 19.45 19.45 0.00 3.32
3857 4115 5.656859 TGAAGTATCACCAAAGAGCTAGCTA 59.343 40.000 19.38 0.00 0.00 3.32
3858 4116 6.325028 TGAAGTATCACCAAAGAGCTAGCTAT 59.675 38.462 19.38 12.73 0.00 2.97
3859 4117 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
3860 4118 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
3861 4119 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
3862 4120 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
3863 4121 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
3864 4122 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
3865 4123 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
3866 4124 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
3867 4125 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
3868 4126 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
3869 4127 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
3870 4128 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
3871 4129 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
3872 4130 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
3873 4131 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
3874 4132 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
3876 4134 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
3877 4135 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
3878 4136 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
3879 4137 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
3880 4138 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
3881 4139 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
3882 4140 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
3883 4141 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
3884 4142 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
3885 4143 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
3886 4144 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
3887 4145 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
3888 4146 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
3889 4147 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
3890 4148 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
3891 4149 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
3892 4150 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
3893 4151 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
3894 4152 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
3895 4153 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
3896 4154 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
3897 4155 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
3898 4156 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
3899 4157 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
3900 4158 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
3901 4159 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
3902 4160 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
3903 4161 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
3904 4162 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
3905 4163 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
3906 4164 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
3907 4165 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
3908 4166 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
3917 4175 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
3918 4176 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
3919 4177 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
3920 4178 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
3921 4179 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
3922 4180 2.688507 TGAGTTGGTTGCGAGATCTTC 58.311 47.619 0.00 0.00 0.00 2.87
3923 4181 2.300152 TGAGTTGGTTGCGAGATCTTCT 59.700 45.455 0.00 0.00 0.00 2.85
3924 4182 2.670414 GAGTTGGTTGCGAGATCTTCTG 59.330 50.000 0.00 0.00 0.00 3.02
3925 4183 1.734465 GTTGGTTGCGAGATCTTCTGG 59.266 52.381 0.00 0.00 0.00 3.86
3926 4184 0.250234 TGGTTGCGAGATCTTCTGGG 59.750 55.000 0.00 0.00 0.00 4.45
3927 4185 0.250513 GGTTGCGAGATCTTCTGGGT 59.749 55.000 0.00 0.00 0.00 4.51
3928 4186 1.339151 GGTTGCGAGATCTTCTGGGTT 60.339 52.381 0.00 0.00 0.00 4.11
3929 4187 2.427506 GTTGCGAGATCTTCTGGGTTT 58.572 47.619 0.00 0.00 0.00 3.27
3930 4188 2.386661 TGCGAGATCTTCTGGGTTTC 57.613 50.000 0.00 0.00 0.00 2.78
3931 4189 1.623311 TGCGAGATCTTCTGGGTTTCA 59.377 47.619 0.00 0.00 0.00 2.69
3932 4190 2.003301 GCGAGATCTTCTGGGTTTCAC 58.997 52.381 0.00 0.00 0.00 3.18
3933 4191 2.622436 CGAGATCTTCTGGGTTTCACC 58.378 52.381 0.00 0.00 37.60 4.02
3934 4192 2.234908 CGAGATCTTCTGGGTTTCACCT 59.765 50.000 0.00 0.00 38.64 4.00
3935 4193 3.677424 CGAGATCTTCTGGGTTTCACCTC 60.677 52.174 0.00 0.00 38.64 3.85
3936 4194 3.517500 GAGATCTTCTGGGTTTCACCTCT 59.482 47.826 0.00 0.00 38.64 3.69
3937 4195 4.689062 AGATCTTCTGGGTTTCACCTCTA 58.311 43.478 0.00 0.00 38.64 2.43
3938 4196 4.714308 AGATCTTCTGGGTTTCACCTCTAG 59.286 45.833 0.00 0.00 38.64 2.43
3939 4197 2.567615 TCTTCTGGGTTTCACCTCTAGC 59.432 50.000 0.00 0.00 38.64 3.42
3940 4198 1.276622 TCTGGGTTTCACCTCTAGCC 58.723 55.000 0.00 0.00 38.64 3.93
3941 4199 1.203313 TCTGGGTTTCACCTCTAGCCT 60.203 52.381 0.00 0.00 38.64 4.58
3942 4200 2.043939 TCTGGGTTTCACCTCTAGCCTA 59.956 50.000 0.00 0.00 38.64 3.93
3943 4201 2.168728 CTGGGTTTCACCTCTAGCCTAC 59.831 54.545 0.00 0.00 38.64 3.18
3944 4202 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
3945 4203 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
3946 4204 2.468915 GTTTCACCTCTAGCCTACCCT 58.531 52.381 0.00 0.00 0.00 4.34
3947 4205 3.629282 GGTTTCACCTCTAGCCTACCCTA 60.629 52.174 0.00 0.00 34.73 3.53
3948 4206 4.028825 GTTTCACCTCTAGCCTACCCTAA 58.971 47.826 0.00 0.00 0.00 2.69
3949 4207 3.309600 TCACCTCTAGCCTACCCTAAC 57.690 52.381 0.00 0.00 0.00 2.34
3950 4208 2.857498 TCACCTCTAGCCTACCCTAACT 59.143 50.000 0.00 0.00 0.00 2.24
3951 4209 3.271490 TCACCTCTAGCCTACCCTAACTT 59.729 47.826 0.00 0.00 0.00 2.66
3952 4210 3.385111 CACCTCTAGCCTACCCTAACTTG 59.615 52.174 0.00 0.00 0.00 3.16
3953 4211 3.012616 ACCTCTAGCCTACCCTAACTTGT 59.987 47.826 0.00 0.00 0.00 3.16
3954 4212 4.031611 CCTCTAGCCTACCCTAACTTGTT 58.968 47.826 0.00 0.00 0.00 2.83
3955 4213 4.470304 CCTCTAGCCTACCCTAACTTGTTT 59.530 45.833 0.00 0.00 0.00 2.83
3956 4214 5.416271 TCTAGCCTACCCTAACTTGTTTG 57.584 43.478 0.00 0.00 0.00 2.93
3957 4215 3.434940 AGCCTACCCTAACTTGTTTGG 57.565 47.619 6.94 6.94 0.00 3.28
3958 4216 2.041216 AGCCTACCCTAACTTGTTTGGG 59.959 50.000 24.28 24.28 44.89 4.12
3959 4217 2.040679 GCCTACCCTAACTTGTTTGGGA 59.959 50.000 29.81 17.01 42.11 4.37
3960 4218 3.682696 CCTACCCTAACTTGTTTGGGAC 58.317 50.000 29.81 0.00 42.11 4.46
3961 4219 3.329814 CCTACCCTAACTTGTTTGGGACT 59.670 47.826 29.81 16.53 42.11 3.85
3962 4220 4.533311 CCTACCCTAACTTGTTTGGGACTA 59.467 45.833 29.81 16.71 42.11 2.59
3963 4221 5.013391 CCTACCCTAACTTGTTTGGGACTAA 59.987 44.000 29.81 15.77 42.11 2.24
3964 4222 5.391577 ACCCTAACTTGTTTGGGACTAAA 57.608 39.130 29.81 0.00 42.11 1.85
3965 4223 5.382616 ACCCTAACTTGTTTGGGACTAAAG 58.617 41.667 29.81 9.99 42.11 1.85
3966 4224 4.765339 CCCTAACTTGTTTGGGACTAAAGG 59.235 45.833 22.48 6.67 42.11 3.11
3967 4225 4.217767 CCTAACTTGTTTGGGACTAAAGGC 59.782 45.833 6.17 0.00 38.11 4.35
3968 4226 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
3969 4227 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
3970 4228 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
3971 4229 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3972 4230 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
3973 4231 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
3974 4232 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
3975 4233 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
3976 4234 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
3977 4235 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
3978 4236 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
3979 4237 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
3980 4238 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
3981 4239 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3982 4240 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
3983 4241 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
3984 4242 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
3985 4243 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3986 4244 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3987 4245 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
3988 4246 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
3989 4247 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
3990 4248 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
3991 4249 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
3992 4250 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3993 4251 5.109210 TGTTGTTGTTGTTGTTGTTGTTGA 58.891 33.333 0.00 0.00 0.00 3.18
3994 4252 5.580691 TGTTGTTGTTGTTGTTGTTGTTGAA 59.419 32.000 0.00 0.00 0.00 2.69
3995 4253 5.643339 TGTTGTTGTTGTTGTTGTTGAAC 57.357 34.783 0.00 0.00 0.00 3.18
3996 4254 5.352284 TGTTGTTGTTGTTGTTGTTGAACT 58.648 33.333 0.00 0.00 32.79 3.01
3997 4255 6.504398 TGTTGTTGTTGTTGTTGTTGAACTA 58.496 32.000 0.00 0.00 32.79 2.24
4033 4291 1.598601 GGTTCAAAACCGCGACACTTA 59.401 47.619 8.23 0.00 42.62 2.24
4185 4443 5.301045 ACTGATAAGGCATTGTTGGATGATG 59.699 40.000 0.00 0.00 0.00 3.07
4261 4519 9.699410 TGATATTTCCATAATCCAACTTTCAGT 57.301 29.630 0.00 0.00 0.00 3.41
4272 4530 6.773976 TCCAACTTTCAGTTTCAGAACAAT 57.226 33.333 0.00 0.00 36.03 2.71
4280 4538 9.226345 CTTTCAGTTTCAGAACAATTGTCTTAC 57.774 33.333 12.39 4.43 38.26 2.34
4286 4544 7.730364 TTCAGAACAATTGTCTTACCTCTTC 57.270 36.000 12.39 2.26 0.00 2.87
4595 4856 4.675114 GTGCCAAGTTCAAATAACAGAACG 59.325 41.667 0.00 0.00 46.54 3.95
4603 4864 6.704493 AGTTCAAATAACAGAACGCTAGTGAA 59.296 34.615 10.99 0.00 46.54 3.18
4614 4875 3.740115 ACGCTAGTGAAGAACAACCAAT 58.260 40.909 10.99 0.00 0.00 3.16
4667 4928 5.713792 AGGACATCTCCTTCATGTATACG 57.286 43.478 0.00 0.00 45.77 3.06
4733 4994 5.425196 AGCATTTTTGGGCATGTATCTTT 57.575 34.783 0.00 0.00 0.00 2.52
4759 5020 6.183360 TGCAATACAAAAGAACTTGTTTGTGC 60.183 34.615 11.07 7.39 45.21 4.57
4777 5038 5.902613 TGTGCCCTGAAATTATTTCTCAG 57.097 39.130 17.16 8.97 40.32 3.35
4792 5053 9.610705 ATTATTTCTCAGCCTAGTATGCATATG 57.389 33.333 10.16 3.03 0.00 1.78
4796 5057 4.898320 TCAGCCTAGTATGCATATGTTGG 58.102 43.478 10.16 11.54 0.00 3.77
4804 5065 5.012239 AGTATGCATATGTTGGCCAATAGG 58.988 41.667 23.66 13.79 38.23 2.57
4829 5090 1.745232 TTCAACAGCGACAAGTTGGT 58.255 45.000 7.96 0.00 43.91 3.67
4939 5203 2.466571 CGATAGAAAAGCGAACGCGTAT 59.533 45.455 14.46 2.21 42.97 3.06
4942 5206 7.437047 CGATAGAAAAGCGAACGCGTATGTT 62.437 44.000 14.46 2.58 42.97 2.71
4967 5231 6.016610 TGTCCCTTATTTTGTACTTGTTGAGC 60.017 38.462 0.00 0.00 0.00 4.26
4987 5251 2.805657 GCACCAACCCTATGATACGGTC 60.806 54.545 0.00 0.00 0.00 4.79
5009 5273 6.260936 GGTCGAAAGGATTGTGTTCATGATAT 59.739 38.462 0.00 0.00 0.00 1.63
5058 5323 5.109903 ACATACTCGACAAGTAATTCTGGC 58.890 41.667 0.00 0.00 43.61 4.85
5215 5517 4.494690 GCAACATGGACATAGTGATGTTCG 60.495 45.833 0.00 0.00 46.64 3.95
5217 5519 4.832248 ACATGGACATAGTGATGTTCGTT 58.168 39.130 0.00 0.00 46.64 3.85
5218 5520 4.631377 ACATGGACATAGTGATGTTCGTTG 59.369 41.667 0.00 0.00 46.64 4.10
5314 5618 3.019564 CAACTTTGGAATAGCTCTGGGG 58.980 50.000 0.00 0.00 0.00 4.96
5315 5619 2.279173 ACTTTGGAATAGCTCTGGGGT 58.721 47.619 0.00 0.00 0.00 4.95
5325 5629 2.839228 AGCTCTGGGGTCAAACTCTAT 58.161 47.619 0.00 0.00 0.00 1.98
5407 5711 1.508632 TTGAAACAGTAGCAGCCGAC 58.491 50.000 0.00 0.00 0.00 4.79
5435 5739 1.642762 AGCTGAGTTGGGATTTGGGAT 59.357 47.619 0.00 0.00 0.00 3.85
5441 5745 3.831911 GAGTTGGGATTTGGGATCAAACA 59.168 43.478 0.00 0.00 44.53 2.83
5444 5748 4.888326 TGGGATTTGGGATCAAACAAAG 57.112 40.909 12.77 0.00 44.53 2.77
5456 5760 2.616376 TCAAACAAAGGACATGGTCACG 59.384 45.455 0.00 0.00 33.68 4.35
5466 5770 2.979813 GACATGGTCACGCATTTTTCAC 59.020 45.455 0.00 0.00 32.09 3.18
5470 5774 4.153958 TGGTCACGCATTTTTCACATAC 57.846 40.909 0.00 0.00 0.00 2.39
5471 5775 3.818210 TGGTCACGCATTTTTCACATACT 59.182 39.130 0.00 0.00 0.00 2.12
5472 5776 4.083537 TGGTCACGCATTTTTCACATACTC 60.084 41.667 0.00 0.00 0.00 2.59
5473 5777 4.403453 GTCACGCATTTTTCACATACTCC 58.597 43.478 0.00 0.00 0.00 3.85
5474 5778 3.438781 TCACGCATTTTTCACATACTCCC 59.561 43.478 0.00 0.00 0.00 4.30
5475 5779 3.440173 CACGCATTTTTCACATACTCCCT 59.560 43.478 0.00 0.00 0.00 4.20
5476 5780 4.079253 ACGCATTTTTCACATACTCCCTT 58.921 39.130 0.00 0.00 0.00 3.95
5477 5781 4.156008 ACGCATTTTTCACATACTCCCTTC 59.844 41.667 0.00 0.00 0.00 3.46
5478 5782 4.155826 CGCATTTTTCACATACTCCCTTCA 59.844 41.667 0.00 0.00 0.00 3.02
5479 5783 5.163622 CGCATTTTTCACATACTCCCTTCAT 60.164 40.000 0.00 0.00 0.00 2.57
5480 5784 6.625740 CGCATTTTTCACATACTCCCTTCATT 60.626 38.462 0.00 0.00 0.00 2.57
5481 5785 7.099120 GCATTTTTCACATACTCCCTTCATTT 58.901 34.615 0.00 0.00 0.00 2.32
5482 5786 7.276438 GCATTTTTCACATACTCCCTTCATTTC 59.724 37.037 0.00 0.00 0.00 2.17
5483 5787 8.526147 CATTTTTCACATACTCCCTTCATTTCT 58.474 33.333 0.00 0.00 0.00 2.52
5484 5788 9.753674 ATTTTTCACATACTCCCTTCATTTCTA 57.246 29.630 0.00 0.00 0.00 2.10
5485 5789 9.581289 TTTTTCACATACTCCCTTCATTTCTAA 57.419 29.630 0.00 0.00 0.00 2.10
5486 5790 9.581289 TTTTCACATACTCCCTTCATTTCTAAA 57.419 29.630 0.00 0.00 0.00 1.85
5487 5791 9.753674 TTTCACATACTCCCTTCATTTCTAAAT 57.246 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.501292 CATTTCATGTCCGCACGCA 59.499 52.632 0.00 0.00 0.00 5.24
1 2 1.226379 CCATTTCATGTCCGCACGC 60.226 57.895 0.00 0.00 0.00 5.34
2 3 1.305219 ACCCATTTCATGTCCGCACG 61.305 55.000 0.00 0.00 0.00 5.34
3 4 0.451783 GACCCATTTCATGTCCGCAC 59.548 55.000 0.00 0.00 0.00 5.34
4 5 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
5 6 0.742990 TCGACCCATTTCATGTCCGC 60.743 55.000 0.00 0.00 0.00 5.54
6 7 1.006832 GTCGACCCATTTCATGTCCG 58.993 55.000 3.51 0.00 0.00 4.79
7 8 1.006832 CGTCGACCCATTTCATGTCC 58.993 55.000 10.58 0.00 0.00 4.02
8 9 0.373716 GCGTCGACCCATTTCATGTC 59.626 55.000 10.58 0.00 0.00 3.06
9 10 1.358725 CGCGTCGACCCATTTCATGT 61.359 55.000 10.58 0.00 0.00 3.21
10 11 1.348250 CGCGTCGACCCATTTCATG 59.652 57.895 10.58 0.00 0.00 3.07
11 12 0.672401 AACGCGTCGACCCATTTCAT 60.672 50.000 14.44 0.00 0.00 2.57
12 13 1.301087 AACGCGTCGACCCATTTCA 60.301 52.632 14.44 0.00 0.00 2.69
13 14 1.131826 CAACGCGTCGACCCATTTC 59.868 57.895 14.44 0.00 0.00 2.17
14 15 2.322081 CCAACGCGTCGACCCATTT 61.322 57.895 14.44 0.00 0.00 2.32
15 16 2.740826 CCAACGCGTCGACCCATT 60.741 61.111 14.44 0.00 0.00 3.16
16 17 3.687102 TCCAACGCGTCGACCCAT 61.687 61.111 14.44 0.00 0.00 4.00
17 18 4.651008 GTCCAACGCGTCGACCCA 62.651 66.667 22.33 0.00 0.00 4.51
27 28 2.043411 CAAATTTGTCTGCGTCCAACG 58.957 47.619 10.15 0.00 45.88 4.10
28 29 3.042887 GTCAAATTTGTCTGCGTCCAAC 58.957 45.455 17.47 1.27 0.00 3.77
29 30 2.948979 AGTCAAATTTGTCTGCGTCCAA 59.051 40.909 17.47 0.00 0.00 3.53
30 31 2.548057 GAGTCAAATTTGTCTGCGTCCA 59.452 45.455 20.34 0.00 0.00 4.02
31 32 2.411547 CGAGTCAAATTTGTCTGCGTCC 60.412 50.000 20.34 6.79 0.00 4.79
32 33 2.827555 CGAGTCAAATTTGTCTGCGTC 58.172 47.619 20.34 7.32 0.00 5.19
33 34 1.069906 GCGAGTCAAATTTGTCTGCGT 60.070 47.619 20.34 0.00 0.00 5.24
34 35 1.595609 GCGAGTCAAATTTGTCTGCG 58.404 50.000 20.34 20.68 0.00 5.18
35 36 1.194547 TCGCGAGTCAAATTTGTCTGC 59.805 47.619 20.34 19.81 0.00 4.26
36 37 2.411547 GGTCGCGAGTCAAATTTGTCTG 60.412 50.000 20.34 13.79 0.00 3.51
37 38 1.798813 GGTCGCGAGTCAAATTTGTCT 59.201 47.619 10.24 16.30 0.00 3.41
38 39 1.136057 GGGTCGCGAGTCAAATTTGTC 60.136 52.381 10.24 12.30 0.00 3.18
39 40 0.872388 GGGTCGCGAGTCAAATTTGT 59.128 50.000 10.24 0.00 0.00 2.83
40 41 0.168128 GGGGTCGCGAGTCAAATTTG 59.832 55.000 10.24 12.15 0.00 2.32
41 42 1.296056 CGGGGTCGCGAGTCAAATTT 61.296 55.000 10.24 0.00 0.00 1.82
42 43 1.740296 CGGGGTCGCGAGTCAAATT 60.740 57.895 10.24 0.00 0.00 1.82
43 44 2.125673 CGGGGTCGCGAGTCAAAT 60.126 61.111 10.24 0.00 0.00 2.32
44 45 3.277211 CTCGGGGTCGCGAGTCAAA 62.277 63.158 23.31 0.00 36.13 2.69
45 46 3.744719 CTCGGGGTCGCGAGTCAA 61.745 66.667 23.31 0.00 36.13 3.18
46 47 4.710167 TCTCGGGGTCGCGAGTCA 62.710 66.667 27.80 13.68 36.13 3.41
47 48 3.437795 TTCTCGGGGTCGCGAGTC 61.438 66.667 27.80 4.69 31.50 3.36
48 49 3.745803 GTTCTCGGGGTCGCGAGT 61.746 66.667 27.80 0.00 31.50 4.18
49 50 3.744719 TGTTCTCGGGGTCGCGAG 61.745 66.667 24.90 24.90 31.50 5.03
50 51 4.047059 GTGTTCTCGGGGTCGCGA 62.047 66.667 3.71 3.71 36.13 5.87
52 53 2.798148 AATGGTGTTCTCGGGGTCGC 62.798 60.000 0.00 0.00 36.13 5.19
53 54 0.321298 AAATGGTGTTCTCGGGGTCG 60.321 55.000 0.00 0.00 37.82 4.79
54 55 1.165270 CAAATGGTGTTCTCGGGGTC 58.835 55.000 0.00 0.00 0.00 4.46
55 56 0.476771 ACAAATGGTGTTCTCGGGGT 59.523 50.000 0.00 0.00 37.01 4.95
56 57 2.483014 TACAAATGGTGTTCTCGGGG 57.517 50.000 0.00 0.00 41.98 5.73
57 58 4.839668 TTTTACAAATGGTGTTCTCGGG 57.160 40.909 0.00 0.00 41.98 5.14
58 59 6.007936 TGATTTTACAAATGGTGTTCTCGG 57.992 37.500 0.00 0.00 41.98 4.63
59 60 8.519492 AAATGATTTTACAAATGGTGTTCTCG 57.481 30.769 0.00 0.00 41.98 4.04
60 61 9.474920 TGAAATGATTTTACAAATGGTGTTCTC 57.525 29.630 0.00 0.00 41.98 2.87
61 62 9.260002 GTGAAATGATTTTACAAATGGTGTTCT 57.740 29.630 7.81 0.00 41.98 3.01
62 63 9.039870 TGTGAAATGATTTTACAAATGGTGTTC 57.960 29.630 12.33 0.00 41.98 3.18
63 64 8.954950 TGTGAAATGATTTTACAAATGGTGTT 57.045 26.923 12.33 0.00 41.98 3.32
64 65 8.954950 TTGTGAAATGATTTTACAAATGGTGT 57.045 26.923 21.15 0.00 43.35 4.16
149 151 2.742372 CAGTGTAGTGTGGCGCCC 60.742 66.667 26.77 16.24 0.00 6.13
213 215 4.563140 AGTAATTTTTAGGCAGTCCGGA 57.437 40.909 0.00 0.00 37.47 5.14
319 359 6.728309 ACTATACAGTGTAGCGCCTAGCATT 61.728 44.000 2.29 0.00 40.43 3.56
321 361 3.997223 ACTATACAGTGTAGCGCCTAGCA 60.997 47.826 2.29 0.00 40.43 3.49
345 385 2.336809 CCTAAGAGCTAGGCGCCG 59.663 66.667 23.20 9.22 41.02 6.46
365 405 6.437928 TGAAAATTATGAAGTCAGTGTGCAC 58.562 36.000 10.75 10.75 0.00 4.57
379 419 6.444633 GCATCCAGGTGATCTGAAAATTATG 58.555 40.000 0.00 0.00 46.18 1.90
380 420 5.240183 CGCATCCAGGTGATCTGAAAATTAT 59.760 40.000 0.00 0.00 46.18 1.28
397 438 1.153647 CTAGCCAACGTCGCATCCA 60.154 57.895 9.92 0.00 0.00 3.41
408 449 2.432456 CGCTGCACGTCTAGCCAA 60.432 61.111 13.29 0.00 36.60 4.52
446 487 0.245539 GAAGGCGCCACACTACACTA 59.754 55.000 31.54 0.00 0.00 2.74
566 608 2.539338 GGTCGGCAGTGCGTTCAAA 61.539 57.895 9.45 0.00 0.00 2.69
567 609 2.970324 GGTCGGCAGTGCGTTCAA 60.970 61.111 9.45 0.00 0.00 2.69
568 610 4.980805 GGGTCGGCAGTGCGTTCA 62.981 66.667 9.45 0.00 0.00 3.18
569 611 4.980805 TGGGTCGGCAGTGCGTTC 62.981 66.667 9.45 1.27 0.00 3.95
570 612 4.555709 TTGGGTCGGCAGTGCGTT 62.556 61.111 9.45 0.00 0.00 4.84
571 613 3.842925 ATTTGGGTCGGCAGTGCGT 62.843 57.895 9.45 0.00 0.00 5.24
572 614 2.141122 AAATTTGGGTCGGCAGTGCG 62.141 55.000 9.45 4.79 0.00 5.34
573 615 0.885196 TAAATTTGGGTCGGCAGTGC 59.115 50.000 6.55 6.55 0.00 4.40
574 616 3.651803 TTTAAATTTGGGTCGGCAGTG 57.348 42.857 0.00 0.00 0.00 3.66
575 617 4.882842 ATTTTAAATTTGGGTCGGCAGT 57.117 36.364 0.00 0.00 0.00 4.40
576 618 5.290885 GCTTATTTTAAATTTGGGTCGGCAG 59.709 40.000 0.00 0.00 0.00 4.85
577 619 5.172205 GCTTATTTTAAATTTGGGTCGGCA 58.828 37.500 0.00 0.00 0.00 5.69
578 620 4.569162 GGCTTATTTTAAATTTGGGTCGGC 59.431 41.667 0.00 0.00 0.00 5.54
579 621 5.725362 TGGCTTATTTTAAATTTGGGTCGG 58.275 37.500 0.00 0.00 0.00 4.79
580 622 6.530181 GTCTGGCTTATTTTAAATTTGGGTCG 59.470 38.462 0.00 0.00 0.00 4.79
581 623 6.530181 CGTCTGGCTTATTTTAAATTTGGGTC 59.470 38.462 0.00 0.00 0.00 4.46
582 624 6.014925 ACGTCTGGCTTATTTTAAATTTGGGT 60.015 34.615 0.00 0.00 0.00 4.51
583 625 6.394809 ACGTCTGGCTTATTTTAAATTTGGG 58.605 36.000 0.00 0.00 0.00 4.12
584 626 6.250527 CGACGTCTGGCTTATTTTAAATTTGG 59.749 38.462 14.70 0.00 0.00 3.28
585 627 6.250527 CCGACGTCTGGCTTATTTTAAATTTG 59.749 38.462 14.70 0.00 0.00 2.32
586 628 6.319399 CCGACGTCTGGCTTATTTTAAATTT 58.681 36.000 14.70 0.00 0.00 1.82
587 629 5.163693 CCCGACGTCTGGCTTATTTTAAATT 60.164 40.000 13.38 0.00 0.00 1.82
588 630 4.334481 CCCGACGTCTGGCTTATTTTAAAT 59.666 41.667 13.38 0.00 0.00 1.40
589 631 3.685756 CCCGACGTCTGGCTTATTTTAAA 59.314 43.478 13.38 0.00 0.00 1.52
590 632 3.264104 CCCGACGTCTGGCTTATTTTAA 58.736 45.455 13.38 0.00 0.00 1.52
591 633 2.896168 CCCGACGTCTGGCTTATTTTA 58.104 47.619 13.38 0.00 0.00 1.52
592 634 1.734163 CCCGACGTCTGGCTTATTTT 58.266 50.000 13.38 0.00 0.00 1.82
593 635 0.743345 GCCCGACGTCTGGCTTATTT 60.743 55.000 35.31 0.00 42.13 1.40
594 636 1.153429 GCCCGACGTCTGGCTTATT 60.153 57.895 35.31 0.00 42.13 1.40
595 637 2.499685 GCCCGACGTCTGGCTTAT 59.500 61.111 35.31 0.00 42.13 1.73
601 643 4.742201 CCACCAGCCCGACGTCTG 62.742 72.222 14.70 7.04 0.00 3.51
614 656 2.764637 ATCTGTTTGGGTCGGCCACC 62.765 60.000 9.07 14.11 45.97 4.61
615 657 0.035820 TATCTGTTTGGGTCGGCCAC 60.036 55.000 9.07 0.00 36.17 5.01
616 658 0.693622 TTATCTGTTTGGGTCGGCCA 59.306 50.000 9.07 0.00 36.17 5.36
617 659 1.828979 TTTATCTGTTTGGGTCGGCC 58.171 50.000 0.00 0.00 0.00 6.13
618 660 3.926821 TTTTTATCTGTTTGGGTCGGC 57.073 42.857 0.00 0.00 0.00 5.54
635 677 3.252458 AGATAGCGCTTTTGTCCGTTTTT 59.748 39.130 18.68 0.00 0.00 1.94
636 678 2.812011 AGATAGCGCTTTTGTCCGTTTT 59.188 40.909 18.68 0.00 0.00 2.43
637 679 2.159627 CAGATAGCGCTTTTGTCCGTTT 59.840 45.455 18.68 0.00 0.00 3.60
638 680 1.732259 CAGATAGCGCTTTTGTCCGTT 59.268 47.619 18.68 0.00 0.00 4.44
639 681 1.337823 ACAGATAGCGCTTTTGTCCGT 60.338 47.619 18.68 5.04 0.00 4.69
640 682 1.359848 ACAGATAGCGCTTTTGTCCG 58.640 50.000 18.68 4.37 0.00 4.79
641 683 3.492313 CAAACAGATAGCGCTTTTGTCC 58.508 45.455 18.68 0.00 0.00 4.02
642 684 3.492313 CCAAACAGATAGCGCTTTTGTC 58.508 45.455 18.68 9.49 0.00 3.18
643 685 2.228822 CCCAAACAGATAGCGCTTTTGT 59.771 45.455 18.68 15.22 0.00 2.83
644 686 2.228822 ACCCAAACAGATAGCGCTTTTG 59.771 45.455 18.68 19.39 0.00 2.44
645 687 2.488153 GACCCAAACAGATAGCGCTTTT 59.512 45.455 18.68 6.73 0.00 2.27
646 688 2.084546 GACCCAAACAGATAGCGCTTT 58.915 47.619 18.68 8.03 0.00 3.51
647 689 1.739067 GACCCAAACAGATAGCGCTT 58.261 50.000 18.68 2.89 0.00 4.68
648 690 0.460284 CGACCCAAACAGATAGCGCT 60.460 55.000 17.26 17.26 0.00 5.92
649 691 0.459585 TCGACCCAAACAGATAGCGC 60.460 55.000 0.00 0.00 0.00 5.92
650 692 1.278238 GTCGACCCAAACAGATAGCG 58.722 55.000 3.51 0.00 0.00 4.26
651 693 1.653151 GGTCGACCCAAACAGATAGC 58.347 55.000 24.75 0.00 0.00 2.97
667 709 0.878961 AACAGCAACTCGAACGGGTC 60.879 55.000 0.00 0.00 0.00 4.46
668 710 0.390124 TAACAGCAACTCGAACGGGT 59.610 50.000 0.00 0.00 0.00 5.28
669 711 1.068474 CTAACAGCAACTCGAACGGG 58.932 55.000 0.00 0.00 0.00 5.28
670 712 0.438830 GCTAACAGCAACTCGAACGG 59.561 55.000 0.00 0.00 41.89 4.44
671 713 1.125021 CAGCTAACAGCAACTCGAACG 59.875 52.381 0.38 0.00 45.56 3.95
672 714 1.136224 GCAGCTAACAGCAACTCGAAC 60.136 52.381 0.38 0.00 45.56 3.95
673 715 1.148310 GCAGCTAACAGCAACTCGAA 58.852 50.000 0.38 0.00 45.56 3.71
674 716 0.318441 AGCAGCTAACAGCAACTCGA 59.682 50.000 0.00 0.00 45.56 4.04
675 717 0.718343 GAGCAGCTAACAGCAACTCG 59.282 55.000 0.00 0.00 45.56 4.18
676 718 1.082690 GGAGCAGCTAACAGCAACTC 58.917 55.000 0.00 10.36 45.56 3.01
677 719 0.397941 TGGAGCAGCTAACAGCAACT 59.602 50.000 0.00 0.00 45.56 3.16
678 720 0.519077 GTGGAGCAGCTAACAGCAAC 59.481 55.000 0.00 0.00 45.56 4.17
679 721 0.108396 TGTGGAGCAGCTAACAGCAA 59.892 50.000 6.35 0.00 45.56 3.91
680 722 0.325933 ATGTGGAGCAGCTAACAGCA 59.674 50.000 14.19 9.28 45.56 4.41
681 723 1.936547 GTATGTGGAGCAGCTAACAGC 59.063 52.381 14.19 7.56 42.84 4.40
682 724 2.169352 AGGTATGTGGAGCAGCTAACAG 59.831 50.000 14.19 0.00 0.00 3.16
683 725 2.093500 CAGGTATGTGGAGCAGCTAACA 60.093 50.000 11.82 11.82 0.00 2.41
684 726 2.168521 TCAGGTATGTGGAGCAGCTAAC 59.831 50.000 0.00 0.00 0.00 2.34
685 727 2.466846 TCAGGTATGTGGAGCAGCTAA 58.533 47.619 0.00 0.00 0.00 3.09
686 728 2.159179 TCAGGTATGTGGAGCAGCTA 57.841 50.000 0.00 0.00 0.00 3.32
687 729 1.140452 CATCAGGTATGTGGAGCAGCT 59.860 52.381 0.00 0.00 0.00 4.24
688 730 1.590932 CATCAGGTATGTGGAGCAGC 58.409 55.000 0.00 0.00 0.00 5.25
689 731 2.251409 CCATCAGGTATGTGGAGCAG 57.749 55.000 0.00 0.00 34.94 4.24
701 743 1.300971 CCGTTGTGCTGACCATCAGG 61.301 60.000 7.89 0.00 44.43 3.86
743 785 3.697747 TCCCGCCGTCAATCCGTT 61.698 61.111 0.00 0.00 0.00 4.44
773 815 2.163815 ACGCTACATGTGTACACTCCTC 59.836 50.000 25.60 9.77 37.67 3.71
795 837 4.517453 CCGTCTTGGTTTTTACTTGGATCA 59.483 41.667 0.00 0.00 0.00 2.92
911 959 0.926720 TGGGCTAGGAGGAGAGAGGT 60.927 60.000 0.00 0.00 0.00 3.85
923 971 1.523758 GTGAGGTGTGTTTGGGCTAG 58.476 55.000 0.00 0.00 0.00 3.42
978 1028 1.745141 GCGGACGACCCTAGAACTAGA 60.745 57.143 10.04 0.00 35.21 2.43
979 1029 0.662085 GCGGACGACCCTAGAACTAG 59.338 60.000 0.00 2.23 0.00 2.57
980 1030 1.091771 CGCGGACGACCCTAGAACTA 61.092 60.000 0.00 0.00 43.93 2.24
981 1031 2.404995 CGCGGACGACCCTAGAACT 61.405 63.158 0.00 0.00 43.93 3.01
982 1032 2.101770 CGCGGACGACCCTAGAAC 59.898 66.667 0.00 0.00 43.93 3.01
983 1033 2.046023 TCGCGGACGACCCTAGAA 60.046 61.111 6.13 0.00 45.12 2.10
1204 1261 1.666023 GCCTTAAGCAAAACACGAGCC 60.666 52.381 0.00 0.00 42.97 4.70
1326 1388 1.841302 ATGAAACAGGCCAGCGAGGA 61.841 55.000 5.01 0.00 41.22 3.71
1489 1561 6.988522 TCTCATGCTACTGTAAAACACTACA 58.011 36.000 0.00 0.00 0.00 2.74
1490 1562 7.599245 ACTTCTCATGCTACTGTAAAACACTAC 59.401 37.037 0.00 0.00 0.00 2.73
1529 1601 5.528043 TTCTGCAAACATTTGGTATGTGT 57.472 34.783 6.49 0.00 38.57 3.72
1535 1607 2.890311 TCCGATTCTGCAAACATTTGGT 59.110 40.909 6.49 0.00 38.57 3.67
1634 1708 3.996363 TCAAGTGCATATAATAGCAGCCG 59.004 43.478 0.00 0.00 42.14 5.52
1637 1711 7.959689 ACTTCTCAAGTGCATATAATAGCAG 57.040 36.000 0.00 0.00 42.14 4.24
1656 1730 9.935241 CCTATTAGTGCATCACATATTACTTCT 57.065 33.333 0.00 0.00 36.74 2.85
1702 1776 5.072040 AGTTTTTATCCCTTTCATTGCCG 57.928 39.130 0.00 0.00 0.00 5.69
1882 1957 5.992729 ACACACAAAATCGTAACCATACAC 58.007 37.500 0.00 0.00 32.02 2.90
1908 1983 2.174639 TGGAAAAGCAAGGAAGTCCAGA 59.825 45.455 0.00 0.00 38.89 3.86
1971 2046 0.509929 CATCATACGTGCCAGCATCG 59.490 55.000 0.00 11.30 0.00 3.84
2010 2085 6.043327 TCGTATCTAATTGAACCATTTGCG 57.957 37.500 0.00 0.00 0.00 4.85
2105 2180 9.261035 CATCTACTACTAGATTGGGTATTGGAT 57.739 37.037 0.00 0.00 37.59 3.41
2313 2419 4.895668 AGGGTACTGTTAATTTCCGTGA 57.104 40.909 0.00 0.00 0.00 4.35
2335 2441 7.089770 TGCAATAGTTTACAACAGAACAACA 57.910 32.000 0.00 0.00 0.00 3.33
2340 2446 7.759489 AAGGATGCAATAGTTTACAACAGAA 57.241 32.000 0.00 0.00 0.00 3.02
2418 2524 7.126421 ACCCTCTCAGAAGATAAAATAGAAGCA 59.874 37.037 0.00 0.00 0.00 3.91
2543 2650 6.403866 ACAATTTCACTTATTTCCACAGCA 57.596 33.333 0.00 0.00 0.00 4.41
2627 2734 7.426929 CCTGATAAAGGTCTGCATATGTAAC 57.573 40.000 4.29 1.67 41.74 2.50
2693 2800 9.665719 TGTAGATGTTTTAGCAATCAATACTCA 57.334 29.630 0.00 0.00 0.00 3.41
2718 2825 3.201290 GGCTCACATATGTGGAAGAGTG 58.799 50.000 30.56 15.20 45.65 3.51
3074 3188 7.232118 GCCATTGGCCATATAACTTCTTAAT 57.768 36.000 17.28 0.00 44.06 1.40
3075 3189 6.648879 GCCATTGGCCATATAACTTCTTAA 57.351 37.500 17.28 0.00 44.06 1.85
3103 3217 3.314913 TGCAACTACATTTGATATGCCCG 59.685 43.478 0.00 0.00 0.00 6.13
3149 3264 7.440198 CAAGAGTATGACATATGGACATGAGT 58.560 38.462 20.33 11.45 0.00 3.41
3162 3277 6.653020 AGTATCAAATGCCAAGAGTATGACA 58.347 36.000 0.00 0.00 0.00 3.58
3163 3278 7.559590 AAGTATCAAATGCCAAGAGTATGAC 57.440 36.000 0.00 0.00 0.00 3.06
3322 3437 4.604784 AGGGCTAGTATACGGGTGATAT 57.395 45.455 0.00 0.00 0.00 1.63
3338 3453 3.531934 ACTATAACGCGTAAAAGGGCT 57.468 42.857 14.46 0.00 0.00 5.19
3593 3851 7.870954 CACAGAATACAACAAAGTACCAGACTA 59.129 37.037 0.00 0.00 37.44 2.59
3604 3862 6.426937 GCTCCTACTTCACAGAATACAACAAA 59.573 38.462 0.00 0.00 0.00 2.83
3640 3898 7.763071 AGTCCATTACTAAATACCGTGTTTCTC 59.237 37.037 0.00 0.00 36.36 2.87
3686 3944 0.329596 ACCCAGACCTTTCAGGATGC 59.670 55.000 0.00 0.00 37.67 3.91
3788 4046 4.464652 TTATTCTGGATCGGAGGGAGTA 57.535 45.455 0.00 0.00 0.00 2.59
3829 4087 4.042187 AGCTCTTTGGTGATACTTCAACCT 59.958 41.667 0.00 0.00 38.93 3.50
3830 4088 4.327680 AGCTCTTTGGTGATACTTCAACC 58.672 43.478 0.00 0.00 38.93 3.77
3831 4089 5.064071 GCTAGCTCTTTGGTGATACTTCAAC 59.936 44.000 7.70 0.00 40.20 3.18
3832 4090 5.046304 AGCTAGCTCTTTGGTGATACTTCAA 60.046 40.000 12.68 0.00 32.48 2.69
3833 4091 4.467795 AGCTAGCTCTTTGGTGATACTTCA 59.532 41.667 12.68 0.00 0.00 3.02
3834 4092 5.017294 AGCTAGCTCTTTGGTGATACTTC 57.983 43.478 12.68 0.00 0.00 3.01
3835 4093 6.463614 CCATAGCTAGCTCTTTGGTGATACTT 60.464 42.308 23.26 0.00 32.65 2.24
3836 4094 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
3837 4095 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
3838 4096 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
3839 4097 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
3840 4098 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
3841 4099 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
3842 4100 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
3843 4101 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
3844 4102 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
3845 4103 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
3846 4104 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
3847 4105 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
3848 4106 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
3849 4107 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
3850 4108 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
3851 4109 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
3852 4110 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
3853 4111 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
3854 4112 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
3855 4113 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
3856 4114 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
3857 4115 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
3859 4117 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
3860 4118 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
3861 4119 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
3862 4120 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
3863 4121 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
3864 4122 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
3865 4123 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
3866 4124 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
3867 4125 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
3868 4126 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
3869 4127 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
3870 4128 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
3871 4129 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
3872 4130 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
3873 4131 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
3874 4132 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
3875 4133 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
3876 4134 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
3877 4135 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
3878 4136 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
3879 4137 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
3880 4138 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
3881 4139 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
3882 4140 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
3883 4141 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
3884 4142 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
3885 4143 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
3886 4144 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
3887 4145 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
3888 4146 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
3889 4147 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
3890 4148 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
3891 4149 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
3892 4150 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
3900 4158 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
3901 4159 3.055530 AGAAGATCTCGCAACCAACTCAT 60.056 43.478 0.00 0.00 0.00 2.90
3902 4160 2.300152 AGAAGATCTCGCAACCAACTCA 59.700 45.455 0.00 0.00 0.00 3.41
3903 4161 2.670414 CAGAAGATCTCGCAACCAACTC 59.330 50.000 0.00 0.00 0.00 3.01
3904 4162 2.613977 CCAGAAGATCTCGCAACCAACT 60.614 50.000 0.00 0.00 0.00 3.16
3905 4163 1.734465 CCAGAAGATCTCGCAACCAAC 59.266 52.381 0.00 0.00 0.00 3.77
3906 4164 1.339055 CCCAGAAGATCTCGCAACCAA 60.339 52.381 0.00 0.00 0.00 3.67
3907 4165 0.250234 CCCAGAAGATCTCGCAACCA 59.750 55.000 0.00 0.00 0.00 3.67
3908 4166 0.250513 ACCCAGAAGATCTCGCAACC 59.749 55.000 0.00 0.00 0.00 3.77
3909 4167 2.100605 AACCCAGAAGATCTCGCAAC 57.899 50.000 0.00 0.00 0.00 4.17
3910 4168 2.038426 TGAAACCCAGAAGATCTCGCAA 59.962 45.455 0.00 0.00 0.00 4.85
3911 4169 1.623311 TGAAACCCAGAAGATCTCGCA 59.377 47.619 0.00 0.00 0.00 5.10
3912 4170 2.003301 GTGAAACCCAGAAGATCTCGC 58.997 52.381 0.00 0.00 0.00 5.03
3926 4184 2.468915 AGGGTAGGCTAGAGGTGAAAC 58.531 52.381 0.00 0.00 0.00 2.78
3927 4185 2.942604 AGGGTAGGCTAGAGGTGAAA 57.057 50.000 0.00 0.00 0.00 2.69
3928 4186 3.271490 AGTTAGGGTAGGCTAGAGGTGAA 59.729 47.826 0.00 0.00 0.00 3.18
3929 4187 2.857498 AGTTAGGGTAGGCTAGAGGTGA 59.143 50.000 0.00 0.00 0.00 4.02
3930 4188 3.315880 AGTTAGGGTAGGCTAGAGGTG 57.684 52.381 0.00 0.00 0.00 4.00
3931 4189 3.012616 ACAAGTTAGGGTAGGCTAGAGGT 59.987 47.826 0.00 0.00 0.00 3.85
3932 4190 3.644335 ACAAGTTAGGGTAGGCTAGAGG 58.356 50.000 0.00 0.00 0.00 3.69
3933 4191 5.420409 CAAACAAGTTAGGGTAGGCTAGAG 58.580 45.833 0.00 0.00 0.00 2.43
3934 4192 4.224370 CCAAACAAGTTAGGGTAGGCTAGA 59.776 45.833 0.00 0.00 0.00 2.43
3935 4193 4.514401 CCAAACAAGTTAGGGTAGGCTAG 58.486 47.826 0.00 0.00 0.00 3.42
3936 4194 3.264964 CCCAAACAAGTTAGGGTAGGCTA 59.735 47.826 0.00 0.00 36.52 3.93
3937 4195 2.041216 CCCAAACAAGTTAGGGTAGGCT 59.959 50.000 0.00 0.00 36.52 4.58
3938 4196 2.040679 TCCCAAACAAGTTAGGGTAGGC 59.959 50.000 0.00 0.00 42.12 3.93
3939 4197 3.329814 AGTCCCAAACAAGTTAGGGTAGG 59.670 47.826 0.00 0.00 42.12 3.18
3940 4198 4.635699 AGTCCCAAACAAGTTAGGGTAG 57.364 45.455 0.00 0.00 42.12 3.18
3941 4199 6.466182 CCTTTAGTCCCAAACAAGTTAGGGTA 60.466 42.308 0.00 0.00 42.12 3.69
3942 4200 5.382616 CTTTAGTCCCAAACAAGTTAGGGT 58.617 41.667 0.00 0.00 42.12 4.34
3943 4201 4.765339 CCTTTAGTCCCAAACAAGTTAGGG 59.235 45.833 0.00 0.00 42.86 3.53
3944 4202 4.217767 GCCTTTAGTCCCAAACAAGTTAGG 59.782 45.833 0.00 0.00 0.00 2.69
3945 4203 5.070685 AGCCTTTAGTCCCAAACAAGTTAG 58.929 41.667 0.00 0.00 0.00 2.34
3946 4204 5.056553 AGCCTTTAGTCCCAAACAAGTTA 57.943 39.130 0.00 0.00 0.00 2.24
3947 4205 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
3948 4206 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
3949 4207 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
3950 4208 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
3951 4209 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
3952 4210 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
3953 4211 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
3954 4212 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
3955 4213 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
3956 4214 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
3957 4215 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
3958 4216 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
3959 4217 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
3960 4218 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
3961 4219 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
3962 4220 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3963 4221 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3964 4222 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3965 4223 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
3966 4224 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
3967 4225 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
3968 4226 6.092122 TCAACAACAACAACAACAACAACAAA 59.908 30.769 0.00 0.00 0.00 2.83
3969 4227 5.580691 TCAACAACAACAACAACAACAACAA 59.419 32.000 0.00 0.00 0.00 2.83
3970 4228 5.109210 TCAACAACAACAACAACAACAACA 58.891 33.333 0.00 0.00 0.00 3.33
3971 4229 5.643339 TCAACAACAACAACAACAACAAC 57.357 34.783 0.00 0.00 0.00 3.32
3972 4230 5.812642 AGTTCAACAACAACAACAACAACAA 59.187 32.000 0.00 0.00 34.60 2.83
3973 4231 5.352284 AGTTCAACAACAACAACAACAACA 58.648 33.333 0.00 0.00 34.60 3.33
3974 4232 5.898630 AGTTCAACAACAACAACAACAAC 57.101 34.783 0.00 0.00 34.60 3.32
3975 4233 6.642950 CCTTAGTTCAACAACAACAACAACAA 59.357 34.615 0.00 0.00 34.60 2.83
3976 4234 6.153067 CCTTAGTTCAACAACAACAACAACA 58.847 36.000 0.00 0.00 34.60 3.33
3977 4235 6.153756 ACCTTAGTTCAACAACAACAACAAC 58.846 36.000 0.00 0.00 34.60 3.32
3978 4236 6.334102 ACCTTAGTTCAACAACAACAACAA 57.666 33.333 0.00 0.00 34.60 2.83
3979 4237 5.968528 ACCTTAGTTCAACAACAACAACA 57.031 34.783 0.00 0.00 34.60 3.33
3980 4238 6.383415 TCAACCTTAGTTCAACAACAACAAC 58.617 36.000 0.00 0.00 34.60 3.32
3981 4239 6.576662 TCAACCTTAGTTCAACAACAACAA 57.423 33.333 0.00 0.00 34.60 2.83
3982 4240 6.207810 AGTTCAACCTTAGTTCAACAACAACA 59.792 34.615 0.00 0.00 39.25 3.33
3983 4241 6.617879 AGTTCAACCTTAGTTCAACAACAAC 58.382 36.000 0.00 0.00 39.25 3.32
3984 4242 6.827586 AGTTCAACCTTAGTTCAACAACAA 57.172 33.333 0.00 0.00 39.25 2.83
3985 4243 6.316890 GGTAGTTCAACCTTAGTTCAACAACA 59.683 38.462 0.00 0.00 39.25 3.33
3986 4244 6.722301 GGTAGTTCAACCTTAGTTCAACAAC 58.278 40.000 0.00 0.00 39.25 3.32
3987 4245 6.930667 GGTAGTTCAACCTTAGTTCAACAA 57.069 37.500 0.00 0.00 39.25 2.83
4033 4291 6.704056 AAATAAGTCCCTCCGATCCATAAT 57.296 37.500 0.00 0.00 0.00 1.28
4185 4443 4.119862 TCCACATAGCGTCTAAATTCAGC 58.880 43.478 0.00 0.00 0.00 4.26
4261 4519 7.228706 GGAAGAGGTAAGACAATTGTTCTGAAA 59.771 37.037 13.36 0.00 0.00 2.69
4272 4530 3.057033 GCAGTACGGAAGAGGTAAGACAA 60.057 47.826 0.00 0.00 0.00 3.18
4280 4538 0.173708 GTCCTGCAGTACGGAAGAGG 59.826 60.000 13.81 1.62 0.00 3.69
4286 4544 1.384989 ATCCTCGTCCTGCAGTACGG 61.385 60.000 28.32 19.24 39.52 4.02
4379 4637 8.846943 TGAAACATCTGATTTTGTAGAAGCTA 57.153 30.769 0.00 0.00 0.00 3.32
4595 4856 4.695455 TGCTATTGGTTGTTCTTCACTAGC 59.305 41.667 0.00 0.00 38.95 3.42
4603 4864 7.817418 TTTTAAGACTGCTATTGGTTGTTCT 57.183 32.000 0.00 0.00 0.00 3.01
4733 4994 7.623089 GCACAAACAAGTTCTTTTGTATTGCAA 60.623 33.333 0.00 0.00 42.67 4.08
4759 5020 6.360618 ACTAGGCTGAGAAATAATTTCAGGG 58.639 40.000 0.00 0.00 42.10 4.45
4777 5038 2.749621 GGCCAACATATGCATACTAGGC 59.250 50.000 23.08 23.08 38.84 3.93
4792 5053 2.031870 GAATGGTCCCTATTGGCCAAC 58.968 52.381 23.27 7.49 41.62 3.77
4796 5057 2.689983 CTGTTGAATGGTCCCTATTGGC 59.310 50.000 0.00 0.00 0.00 4.52
4804 5065 1.197721 CTTGTCGCTGTTGAATGGTCC 59.802 52.381 0.00 0.00 0.00 4.46
4829 5090 6.155393 ACCAAATTCCCTTCAAACAAGTTGTA 59.845 34.615 9.37 0.00 38.47 2.41
4898 5162 0.464554 TGTCACACGGTTGGCAATCA 60.465 50.000 11.63 0.00 0.00 2.57
4901 5165 3.503749 GTGTCACACGGTTGGCAA 58.496 55.556 0.00 0.00 31.47 4.52
4939 5203 7.339721 TCAACAAGTACAAAATAAGGGACAACA 59.660 33.333 0.00 0.00 0.00 3.33
4942 5206 6.016610 GCTCAACAAGTACAAAATAAGGGACA 60.017 38.462 0.00 0.00 0.00 4.02
4943 5207 6.016610 TGCTCAACAAGTACAAAATAAGGGAC 60.017 38.462 0.00 0.00 0.00 4.46
4967 5231 2.545113 CGACCGTATCATAGGGTTGGTG 60.545 54.545 14.12 1.58 46.13 4.17
4987 5251 7.475015 ACAATATCATGAACACAATCCTTTCG 58.525 34.615 0.00 0.00 0.00 3.46
5058 5323 4.097589 CCTTGTAACTACTACTTCCTCCGG 59.902 50.000 0.00 0.00 0.00 5.14
5175 5477 1.185315 TGCCCTTGCTTAGAATTGCC 58.815 50.000 0.00 0.00 38.71 4.52
5215 5517 0.598065 CAAGGCAAGCCCACTACAAC 59.402 55.000 7.62 0.00 36.58 3.32
5217 5519 0.250727 GTCAAGGCAAGCCCACTACA 60.251 55.000 7.62 0.00 36.58 2.74
5218 5520 0.960861 GGTCAAGGCAAGCCCACTAC 60.961 60.000 7.62 1.43 36.58 2.73
5314 5618 6.760770 CCCTTGAGATTCTCATAGAGTTTGAC 59.239 42.308 16.82 0.00 40.39 3.18
5315 5619 6.441924 ACCCTTGAGATTCTCATAGAGTTTGA 59.558 38.462 16.82 0.00 40.39 2.69
5325 5629 5.503634 TGAATTCACCCTTGAGATTCTCA 57.496 39.130 12.38 12.38 38.87 3.27
5380 5684 6.586082 CGGCTGCTACTGTTTCAAATAAAAAT 59.414 34.615 0.00 0.00 0.00 1.82
5384 5688 4.153475 GTCGGCTGCTACTGTTTCAAATAA 59.847 41.667 0.00 0.00 0.00 1.40
5385 5689 3.682858 GTCGGCTGCTACTGTTTCAAATA 59.317 43.478 0.00 0.00 0.00 1.40
5414 5718 1.180029 CCCAAATCCCAACTCAGCTG 58.820 55.000 7.63 7.63 0.00 4.24
5415 5719 1.075601 TCCCAAATCCCAACTCAGCT 58.924 50.000 0.00 0.00 0.00 4.24
5416 5720 2.027385 GATCCCAAATCCCAACTCAGC 58.973 52.381 0.00 0.00 0.00 4.26
5417 5721 3.370840 TGATCCCAAATCCCAACTCAG 57.629 47.619 0.00 0.00 0.00 3.35
5418 5722 3.824001 TTGATCCCAAATCCCAACTCA 57.176 42.857 0.00 0.00 0.00 3.41
5419 5723 3.831911 TGTTTGATCCCAAATCCCAACTC 59.168 43.478 0.00 0.00 43.37 3.01
5420 5724 3.855668 TGTTTGATCCCAAATCCCAACT 58.144 40.909 0.00 0.00 43.37 3.16
5421 5725 4.615588 TTGTTTGATCCCAAATCCCAAC 57.384 40.909 0.00 0.00 43.37 3.77
5422 5726 4.041444 CCTTTGTTTGATCCCAAATCCCAA 59.959 41.667 0.00 0.00 43.37 4.12
5423 5727 3.582208 CCTTTGTTTGATCCCAAATCCCA 59.418 43.478 0.00 0.00 43.37 4.37
5424 5728 3.837731 TCCTTTGTTTGATCCCAAATCCC 59.162 43.478 0.00 0.00 43.37 3.85
5435 5739 2.616376 CGTGACCATGTCCTTTGTTTGA 59.384 45.455 0.00 0.00 0.00 2.69
5441 5745 1.909700 AATGCGTGACCATGTCCTTT 58.090 45.000 0.00 0.00 0.00 3.11
5444 5748 2.030363 TGAAAAATGCGTGACCATGTCC 60.030 45.455 0.00 0.00 0.00 4.02
5456 5760 5.643379 TGAAGGGAGTATGTGAAAAATGC 57.357 39.130 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.