Multiple sequence alignment - TraesCS7D01G271600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G271600
chr7D
100.000
3926
0
0
1
3926
261117178
261113253
0.000000e+00
7251.0
1
TraesCS7D01G271600
chr7D
86.533
698
84
10
3162
3854
402574009
402574701
0.000000e+00
760.0
2
TraesCS7D01G271600
chr7D
86.364
704
82
12
3159
3853
4651649
4650951
0.000000e+00
756.0
3
TraesCS7D01G271600
chr7D
85.220
636
78
9
19
640
611010268
611009635
1.190000e-179
640.0
4
TraesCS7D01G271600
chr7B
96.132
2249
70
6
918
3159
240332788
240330550
0.000000e+00
3655.0
5
TraesCS7D01G271600
chr7B
86.514
697
88
5
3160
3854
85331985
85332677
0.000000e+00
761.0
6
TraesCS7D01G271600
chr7B
86.467
702
78
14
3159
3852
749122278
749122970
0.000000e+00
754.0
7
TraesCS7D01G271600
chr7B
88.000
475
51
5
258
726
240333391
240332917
1.230000e-154
556.0
8
TraesCS7D01G271600
chr7B
76.101
636
121
26
4
618
732634264
732634889
1.770000e-78
303.0
9
TraesCS7D01G271600
chr7A
95.887
2237
72
6
918
3151
284526284
284528503
0.000000e+00
3603.0
10
TraesCS7D01G271600
chr7A
86.402
706
77
16
3159
3855
20990949
20990254
0.000000e+00
754.0
11
TraesCS7D01G271600
chr7A
84.119
636
73
20
22
640
408691867
408691243
1.220000e-164
590.0
12
TraesCS7D01G271600
chr7A
89.231
65
7
0
2429
2493
706035830
706035766
9.040000e-12
82.4
13
TraesCS7D01G271600
chr1D
88.218
696
69
7
3162
3855
480542214
480541530
0.000000e+00
819.0
14
TraesCS7D01G271600
chr2B
87.749
702
80
5
3156
3855
579916115
579916812
0.000000e+00
815.0
15
TraesCS7D01G271600
chr2B
76.769
650
122
23
28
655
673955940
673956582
1.750000e-88
337.0
16
TraesCS7D01G271600
chr2D
87.518
705
76
9
3159
3855
81324163
81323463
0.000000e+00
804.0
17
TraesCS7D01G271600
chr2D
87.358
617
60
12
38
640
73137535
73136923
0.000000e+00
691.0
18
TraesCS7D01G271600
chr2D
94.521
73
4
0
3854
3926
189373246
189373174
3.210000e-21
113.0
19
TraesCS7D01G271600
chr3D
86.981
699
81
8
3162
3855
305633665
305634358
0.000000e+00
778.0
20
TraesCS7D01G271600
chr4D
85.063
636
77
13
22
640
47555681
47555047
1.990000e-177
632.0
21
TraesCS7D01G271600
chr4D
94.521
73
4
0
3854
3926
121536761
121536833
3.210000e-21
113.0
22
TraesCS7D01G271600
chr5D
84.248
565
74
9
86
637
437532691
437533253
1.610000e-148
536.0
23
TraesCS7D01G271600
chr5D
94.444
72
4
0
3854
3925
213485718
213485789
1.150000e-20
111.0
24
TraesCS7D01G271600
chr4A
82.399
642
85
16
8
633
704622282
704622911
5.770000e-148
534.0
25
TraesCS7D01G271600
chrUn
85.170
499
60
8
151
637
30115057
30115553
2.110000e-137
499.0
26
TraesCS7D01G271600
chrUn
95.833
72
2
1
3854
3925
38773735
38773805
8.910000e-22
115.0
27
TraesCS7D01G271600
chrUn
94.521
73
4
0
3854
3926
104463566
104463494
3.210000e-21
113.0
28
TraesCS7D01G271600
chrUn
89.831
59
6
0
2435
2493
293161373
293161315
4.210000e-10
76.8
29
TraesCS7D01G271600
chrUn
86.765
68
9
0
2426
2493
409868750
409868817
4.210000e-10
76.8
30
TraesCS7D01G271600
chr6A
85.031
481
60
6
19
487
425304635
425305115
2.740000e-131
479.0
31
TraesCS7D01G271600
chr3A
95.890
73
3
0
3854
3926
549325935
549325863
6.890000e-23
119.0
32
TraesCS7D01G271600
chr5B
94.595
74
4
0
3853
3926
129725908
129725835
8.910000e-22
115.0
33
TraesCS7D01G271600
chr3B
94.521
73
4
0
3854
3926
676259620
676259692
3.210000e-21
113.0
34
TraesCS7D01G271600
chr1B
94.521
73
3
1
3854
3926
679528754
679528683
1.150000e-20
111.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G271600
chr7D
261113253
261117178
3925
True
7251.0
7251
100.000
1
3926
1
chr7D.!!$R2
3925
1
TraesCS7D01G271600
chr7D
402574009
402574701
692
False
760.0
760
86.533
3162
3854
1
chr7D.!!$F1
692
2
TraesCS7D01G271600
chr7D
4650951
4651649
698
True
756.0
756
86.364
3159
3853
1
chr7D.!!$R1
694
3
TraesCS7D01G271600
chr7D
611009635
611010268
633
True
640.0
640
85.220
19
640
1
chr7D.!!$R3
621
4
TraesCS7D01G271600
chr7B
240330550
240333391
2841
True
2105.5
3655
92.066
258
3159
2
chr7B.!!$R1
2901
5
TraesCS7D01G271600
chr7B
85331985
85332677
692
False
761.0
761
86.514
3160
3854
1
chr7B.!!$F1
694
6
TraesCS7D01G271600
chr7B
749122278
749122970
692
False
754.0
754
86.467
3159
3852
1
chr7B.!!$F3
693
7
TraesCS7D01G271600
chr7B
732634264
732634889
625
False
303.0
303
76.101
4
618
1
chr7B.!!$F2
614
8
TraesCS7D01G271600
chr7A
284526284
284528503
2219
False
3603.0
3603
95.887
918
3151
1
chr7A.!!$F1
2233
9
TraesCS7D01G271600
chr7A
20990254
20990949
695
True
754.0
754
86.402
3159
3855
1
chr7A.!!$R1
696
10
TraesCS7D01G271600
chr7A
408691243
408691867
624
True
590.0
590
84.119
22
640
1
chr7A.!!$R2
618
11
TraesCS7D01G271600
chr1D
480541530
480542214
684
True
819.0
819
88.218
3162
3855
1
chr1D.!!$R1
693
12
TraesCS7D01G271600
chr2B
579916115
579916812
697
False
815.0
815
87.749
3156
3855
1
chr2B.!!$F1
699
13
TraesCS7D01G271600
chr2B
673955940
673956582
642
False
337.0
337
76.769
28
655
1
chr2B.!!$F2
627
14
TraesCS7D01G271600
chr2D
81323463
81324163
700
True
804.0
804
87.518
3159
3855
1
chr2D.!!$R2
696
15
TraesCS7D01G271600
chr2D
73136923
73137535
612
True
691.0
691
87.358
38
640
1
chr2D.!!$R1
602
16
TraesCS7D01G271600
chr3D
305633665
305634358
693
False
778.0
778
86.981
3162
3855
1
chr3D.!!$F1
693
17
TraesCS7D01G271600
chr4D
47555047
47555681
634
True
632.0
632
85.063
22
640
1
chr4D.!!$R1
618
18
TraesCS7D01G271600
chr5D
437532691
437533253
562
False
536.0
536
84.248
86
637
1
chr5D.!!$F2
551
19
TraesCS7D01G271600
chr4A
704622282
704622911
629
False
534.0
534
82.399
8
633
1
chr4A.!!$F1
625
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
903
939
0.105194
CCCCCACCCCATAAATTCCC
60.105
60.0
0.0
0.0
0.00
3.97
F
904
940
0.105194
CCCCACCCCATAAATTCCCC
60.105
60.0
0.0
0.0
0.00
4.81
F
909
945
0.105194
CCCCATAAATTCCCCACCCC
60.105
60.0
0.0
0.0
0.00
4.95
F
1241
1280
0.387929
GCTACCACTACCGCAGCATA
59.612
55.0
0.0
0.0
32.46
3.14
F
2046
2085
0.464013
TAGAGAAGAGGGTCGAGGCG
60.464
60.0
0.0
0.0
0.00
5.52
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1782
1821
0.036732
TGGTGGTGAGGAACATCTGC
59.963
55.0
0.00
0.0
0.00
4.26
R
2286
2326
0.471211
TCGTCTCTGTTCCCCCAACT
60.471
55.0
0.00
0.0
35.79
3.16
R
2295
2335
0.659427
TGTTCGACGTCGTCTCTGTT
59.341
50.0
34.40
0.0
40.80
3.16
R
2580
2620
1.121407
CAGCGGGGTCCCTCATGATA
61.121
60.0
8.15
0.0
0.00
2.15
R
3387
3440
0.032815
GTCGGCTGCTATTCTCTCCC
59.967
60.0
0.00
0.0
0.00
4.30
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
4.389576
CAACAACGGCCTCGCTGC
62.390
66.667
0.00
0.00
38.71
5.25
95
96
4.221924
TGGTTTACTTCGATGGTGAGATGA
59.778
41.667
3.12
0.00
0.00
2.92
118
120
6.483974
TGAAAACTATAAAAGACGGCTTGACA
59.516
34.615
3.03
0.00
33.79
3.58
140
142
4.408821
GGGATGGTGGTGCAGCGA
62.409
66.667
11.91
0.00
34.27
4.93
155
158
0.108377
AGCGACGTTGGTGCATATCA
60.108
50.000
6.72
0.00
0.00
2.15
173
177
2.170166
TCACATTTGTTGCTGGGATCC
58.830
47.619
1.92
1.92
0.00
3.36
184
188
0.618458
CTGGGATCCCGGAAAAGTGA
59.382
55.000
33.38
7.67
45.10
3.41
345
363
4.222114
GTTTTGCTTGGACTGATTCTTCG
58.778
43.478
0.00
0.00
0.00
3.79
359
377
5.547465
TGATTCTTCGAGGTGAAAAGCTAA
58.453
37.500
0.00
0.00
35.79
3.09
388
408
2.028420
TTGCTGGTTGGATCGATGAG
57.972
50.000
0.54
0.00
0.00
2.90
395
415
2.166459
GGTTGGATCGATGAGAGTGACA
59.834
50.000
0.54
0.00
0.00
3.58
400
420
3.443037
GATCGATGAGAGTGACACTTGG
58.557
50.000
10.01
0.00
0.00
3.61
615
646
7.619965
TGTAGGAGTTGATATTGATTGTGTGA
58.380
34.615
0.00
0.00
0.00
3.58
641
672
4.815308
TCTAGTTATGCAGAGACCGAGTAC
59.185
45.833
0.00
0.00
0.00
2.73
642
673
3.622630
AGTTATGCAGAGACCGAGTACT
58.377
45.455
0.00
0.00
0.00
2.73
644
675
5.191426
AGTTATGCAGAGACCGAGTACTTA
58.809
41.667
0.00
0.00
0.00
2.24
645
676
5.828859
AGTTATGCAGAGACCGAGTACTTAT
59.171
40.000
0.00
0.00
0.00
1.73
646
677
6.996879
AGTTATGCAGAGACCGAGTACTTATA
59.003
38.462
0.00
0.00
0.00
0.98
673
709
9.638239
TGTTTGTAATTCTGAGCCAATAAAATC
57.362
29.630
0.00
0.00
0.00
2.17
675
711
7.953005
TGTAATTCTGAGCCAATAAAATCCA
57.047
32.000
0.00
0.00
0.00
3.41
677
713
6.855763
AATTCTGAGCCAATAAAATCCACA
57.144
33.333
0.00
0.00
0.00
4.17
698
734
7.013274
TCCACACTTTATCAAAAGAAGTTGGAG
59.987
37.037
4.95
0.00
44.14
3.86
700
736
8.836413
CACACTTTATCAAAAGAAGTTGGAGTA
58.164
33.333
4.95
0.00
44.14
2.59
718
754
4.820173
GGAGTAGTCCATTAATTTTCCCCG
59.180
45.833
12.02
0.00
43.31
5.73
719
755
4.204799
AGTAGTCCATTAATTTTCCCCGC
58.795
43.478
0.00
0.00
0.00
6.13
720
756
3.382083
AGTCCATTAATTTTCCCCGCT
57.618
42.857
0.00
0.00
0.00
5.52
721
757
3.288092
AGTCCATTAATTTTCCCCGCTC
58.712
45.455
0.00
0.00
0.00
5.03
722
758
2.032924
GTCCATTAATTTTCCCCGCTCG
59.967
50.000
0.00
0.00
0.00
5.03
723
759
1.336755
CCATTAATTTTCCCCGCTCGG
59.663
52.381
0.48
0.48
0.00
4.63
724
760
2.021457
CATTAATTTTCCCCGCTCGGT
58.979
47.619
7.59
0.00
0.00
4.69
725
761
2.203470
TTAATTTTCCCCGCTCGGTT
57.797
45.000
7.59
0.00
0.00
4.44
726
762
1.741528
TAATTTTCCCCGCTCGGTTC
58.258
50.000
7.59
0.00
0.00
3.62
727
763
0.963856
AATTTTCCCCGCTCGGTTCC
60.964
55.000
7.59
0.00
0.00
3.62
728
764
2.831894
ATTTTCCCCGCTCGGTTCCC
62.832
60.000
7.59
0.00
0.00
3.97
822
858
2.174319
GCGAGGCATCCCGTTCTTC
61.174
63.158
0.00
0.00
35.76
2.87
839
875
2.715532
TTCGCTGCTCCAGTCCACAC
62.716
60.000
0.00
0.00
33.43
3.82
895
931
3.021263
GCACTACCCCCACCCCAT
61.021
66.667
0.00
0.00
0.00
4.00
896
932
1.694882
GCACTACCCCCACCCCATA
60.695
63.158
0.00
0.00
0.00
2.74
897
933
1.283381
GCACTACCCCCACCCCATAA
61.283
60.000
0.00
0.00
0.00
1.90
898
934
1.300927
CACTACCCCCACCCCATAAA
58.699
55.000
0.00
0.00
0.00
1.40
899
935
1.856920
CACTACCCCCACCCCATAAAT
59.143
52.381
0.00
0.00
0.00
1.40
900
936
2.246327
CACTACCCCCACCCCATAAATT
59.754
50.000
0.00
0.00
0.00
1.82
901
937
2.516702
ACTACCCCCACCCCATAAATTC
59.483
50.000
0.00
0.00
0.00
2.17
902
938
0.639943
ACCCCCACCCCATAAATTCC
59.360
55.000
0.00
0.00
0.00
3.01
903
939
0.105194
CCCCCACCCCATAAATTCCC
60.105
60.000
0.00
0.00
0.00
3.97
904
940
0.105194
CCCCACCCCATAAATTCCCC
60.105
60.000
0.00
0.00
0.00
4.81
905
941
0.639392
CCCACCCCATAAATTCCCCA
59.361
55.000
0.00
0.00
0.00
4.96
906
942
1.691163
CCCACCCCATAAATTCCCCAC
60.691
57.143
0.00
0.00
0.00
4.61
907
943
1.691163
CCACCCCATAAATTCCCCACC
60.691
57.143
0.00
0.00
0.00
4.61
908
944
0.639943
ACCCCATAAATTCCCCACCC
59.360
55.000
0.00
0.00
0.00
4.61
909
945
0.105194
CCCCATAAATTCCCCACCCC
60.105
60.000
0.00
0.00
0.00
4.95
910
946
0.639392
CCCATAAATTCCCCACCCCA
59.361
55.000
0.00
0.00
0.00
4.96
911
947
1.222817
CCCATAAATTCCCCACCCCAT
59.777
52.381
0.00
0.00
0.00
4.00
912
948
2.452823
CCCATAAATTCCCCACCCCATA
59.547
50.000
0.00
0.00
0.00
2.74
913
949
3.116551
CCCATAAATTCCCCACCCCATAA
60.117
47.826
0.00
0.00
0.00
1.90
914
950
4.561752
CCATAAATTCCCCACCCCATAAA
58.438
43.478
0.00
0.00
0.00
1.40
915
951
5.161886
CCATAAATTCCCCACCCCATAAAT
58.838
41.667
0.00
0.00
0.00
1.40
916
952
5.610557
CCATAAATTCCCCACCCCATAAATT
59.389
40.000
0.00
0.00
0.00
1.82
917
953
6.239858
CCATAAATTCCCCACCCCATAAATTC
60.240
42.308
0.00
0.00
0.00
2.17
918
954
2.858787
TTCCCCACCCCATAAATTCC
57.141
50.000
0.00
0.00
0.00
3.01
919
955
0.938192
TCCCCACCCCATAAATTCCC
59.062
55.000
0.00
0.00
0.00
3.97
920
956
0.639392
CCCCACCCCATAAATTCCCA
59.361
55.000
0.00
0.00
0.00
4.37
921
957
1.691163
CCCCACCCCATAAATTCCCAC
60.691
57.143
0.00
0.00
0.00
4.61
922
958
1.691163
CCCACCCCATAAATTCCCACC
60.691
57.143
0.00
0.00
0.00
4.61
937
973
3.116959
TCCCACCCCATAAATTAGTCGT
58.883
45.455
0.00
0.00
0.00
4.34
1112
1148
3.118454
CCGTCCACATGCGACCAC
61.118
66.667
7.70
0.00
0.00
4.16
1128
1164
0.802494
CCACATCAACCAACGCCTAC
59.198
55.000
0.00
0.00
0.00
3.18
1163
1202
0.521735
GGAAAACACCGCCTTGCTAG
59.478
55.000
0.00
0.00
0.00
3.42
1182
1221
3.147595
TCCAGTCAGGATCCGCCG
61.148
66.667
5.98
0.00
43.07
6.46
1212
1251
1.004560
TGCCTGCTTCTCCTTGTCG
60.005
57.895
0.00
0.00
0.00
4.35
1230
1269
1.038130
CGCAGTCCCTAGCTACCACT
61.038
60.000
0.00
0.00
0.00
4.00
1239
1278
0.681887
TAGCTACCACTACCGCAGCA
60.682
55.000
0.00
0.00
34.65
4.41
1241
1280
0.387929
GCTACCACTACCGCAGCATA
59.612
55.000
0.00
0.00
32.46
3.14
1557
1596
2.046864
CCTCGTCTTCTCCAGCCGA
61.047
63.158
0.00
0.00
0.00
5.54
1842
1881
3.334891
TGGGGCGGCAACATAGGT
61.335
61.111
12.47
0.00
0.00
3.08
1998
2037
4.415332
TCGGACGCGCTCAAGGAC
62.415
66.667
5.73
0.00
0.00
3.85
1999
2038
4.717629
CGGACGCGCTCAAGGACA
62.718
66.667
5.73
0.00
0.00
4.02
2046
2085
0.464013
TAGAGAAGAGGGTCGAGGCG
60.464
60.000
0.00
0.00
0.00
5.52
2273
2313
2.353889
GTGCATGTGTCCTGTGATGATC
59.646
50.000
0.00
0.00
0.00
2.92
2295
2335
4.110592
TCATAGGATATGGTAGTTGGGGGA
59.889
45.833
0.00
0.00
0.00
4.81
2580
2620
4.595538
TTCGTCAACGCGTGGGCT
62.596
61.111
17.46
0.00
39.60
5.19
2972
3012
0.994995
CTCCGTGCTCGAATCAGTTG
59.005
55.000
10.21
0.00
39.71
3.16
3042
3082
6.254804
AGTTTGTTTTTCTACGGTTGCAATTC
59.745
34.615
0.59
0.00
0.00
2.17
3188
3233
5.013079
AGAGGGATTGTTGCGGAATATGATA
59.987
40.000
0.00
0.00
0.00
2.15
3211
3256
2.176045
TGTTGTATTGAGCCTCTCGGA
58.824
47.619
0.00
0.00
32.35
4.55
3237
3283
8.752187
ACGGTTTATATAGAGTACAAGGTTTGA
58.248
33.333
0.00
0.00
0.00
2.69
3269
3315
5.862678
AACCTCTCTTAGAGATAAGGCAC
57.137
43.478
12.75
0.00
45.07
5.01
3271
3317
4.647399
ACCTCTCTTAGAGATAAGGCACAC
59.353
45.833
12.75
0.00
45.07
3.82
3363
3411
2.027073
CGGTAGCAGCGCAGACAAA
61.027
57.895
11.47
0.00
30.39
2.83
3370
3418
1.227943
AGCGCAGACAAAAGGAGCA
60.228
52.632
11.47
0.00
0.00
4.26
3387
3440
4.175489
ATCGCGGACGGTCAGACG
62.175
66.667
12.54
13.89
40.63
4.18
3495
3549
1.201880
GTAGAGGAAGCCGACGAGTTT
59.798
52.381
0.00
0.00
0.00
2.66
3521
3575
2.240667
AGCAGATGATAGCCCTTTGTGT
59.759
45.455
0.00
0.00
0.00
3.72
3589
3643
2.514510
TAGCCGTGCGAAGAATGCCA
62.515
55.000
0.00
0.00
0.00
4.92
3602
3656
0.815213
AATGCCATGGTCGATGTCGG
60.815
55.000
14.67
0.00
40.29
4.79
3612
3666
3.072468
GATGTCGGGTCGGGGTGA
61.072
66.667
0.00
0.00
0.00
4.02
3666
3720
1.810030
CAAGGAGGCGCCGAGTTAC
60.810
63.158
23.20
3.60
43.43
2.50
3680
3735
2.749839
TTACCATGGGCGCAGTGC
60.750
61.111
18.09
4.58
45.38
4.40
3704
3759
2.240162
GAAGTAGGGGTGCACCGGAG
62.240
65.000
29.08
0.00
41.60
4.63
3723
3779
3.506810
GAGAGAAGATGGTGTTGACGAG
58.493
50.000
0.00
0.00
0.00
4.18
3782
3838
2.202690
CGAAGGCACGCACCGATA
60.203
61.111
0.00
0.00
33.69
2.92
3786
3842
0.392461
AAGGCACGCACCGATATTGT
60.392
50.000
0.00
0.00
33.69
2.71
3793
3849
0.301687
GCACCGATATTGTCAGCACG
59.698
55.000
0.00
0.00
0.00
5.34
3821
3877
2.438583
CATAGACGGACGAAGACGAAC
58.561
52.381
0.00
0.00
42.66
3.95
3830
3886
2.785477
GACGAAGACGAACTTGACGAAA
59.215
45.455
12.00
0.00
42.66
3.46
3831
3887
3.378339
ACGAAGACGAACTTGACGAAAT
58.622
40.909
12.00
0.00
42.66
2.17
3862
3918
3.720601
TGCTAGGCCCAGCACCAG
61.721
66.667
22.80
0.00
46.41
4.00
3863
3919
4.496336
GCTAGGCCCAGCACCAGG
62.496
72.222
19.09
0.00
41.40
4.45
3873
3929
2.900273
GCACCAGGCATCCGTAGA
59.100
61.111
0.00
0.00
43.97
2.59
3874
3930
1.521681
GCACCAGGCATCCGTAGAC
60.522
63.158
0.00
0.00
43.97
2.59
3875
3931
1.897423
CACCAGGCATCCGTAGACA
59.103
57.895
0.00
0.00
0.00
3.41
3876
3932
0.249120
CACCAGGCATCCGTAGACAA
59.751
55.000
0.00
0.00
0.00
3.18
3877
3933
0.537188
ACCAGGCATCCGTAGACAAG
59.463
55.000
0.00
0.00
0.00
3.16
3878
3934
0.179073
CCAGGCATCCGTAGACAAGG
60.179
60.000
0.00
0.00
0.00
3.61
3879
3935
0.179073
CAGGCATCCGTAGACAAGGG
60.179
60.000
0.00
0.00
34.20
3.95
3880
3936
0.325296
AGGCATCCGTAGACAAGGGA
60.325
55.000
0.00
0.00
45.93
4.20
3881
3937
0.179081
GGCATCCGTAGACAAGGGAC
60.179
60.000
0.00
0.00
44.72
4.46
3882
3938
0.179081
GCATCCGTAGACAAGGGACC
60.179
60.000
0.00
0.00
44.72
4.46
3883
3939
1.486211
CATCCGTAGACAAGGGACCT
58.514
55.000
0.00
0.00
44.72
3.85
3884
3940
1.137086
CATCCGTAGACAAGGGACCTG
59.863
57.143
0.00
0.00
44.72
4.00
3885
3941
1.218316
CCGTAGACAAGGGACCTGC
59.782
63.158
0.00
0.00
34.90
4.85
3886
3942
1.541310
CCGTAGACAAGGGACCTGCA
61.541
60.000
0.00
0.00
34.90
4.41
3887
3943
0.389948
CGTAGACAAGGGACCTGCAC
60.390
60.000
0.00
0.00
0.00
4.57
3888
3944
0.389948
GTAGACAAGGGACCTGCACG
60.390
60.000
0.00
0.00
0.00
5.34
3889
3945
0.541063
TAGACAAGGGACCTGCACGA
60.541
55.000
0.00
0.00
0.00
4.35
3890
3946
1.374758
GACAAGGGACCTGCACGAG
60.375
63.158
0.00
0.00
0.00
4.18
3891
3947
2.743928
CAAGGGACCTGCACGAGC
60.744
66.667
0.00
0.00
42.57
5.03
3892
3948
2.925170
AAGGGACCTGCACGAGCT
60.925
61.111
6.36
0.00
42.74
4.09
3893
3949
3.245668
AAGGGACCTGCACGAGCTG
62.246
63.158
6.36
5.51
42.74
4.24
3894
3950
4.008933
GGGACCTGCACGAGCTGT
62.009
66.667
6.36
3.29
42.74
4.40
3895
3951
2.646175
GGGACCTGCACGAGCTGTA
61.646
63.158
6.36
0.00
42.74
2.74
3896
3952
1.446272
GGACCTGCACGAGCTGTAC
60.446
63.158
6.36
0.43
42.74
2.90
3897
3953
1.801913
GACCTGCACGAGCTGTACG
60.802
63.158
6.36
0.00
42.74
3.67
3898
3954
3.181967
CCTGCACGAGCTGTACGC
61.182
66.667
6.36
2.08
42.74
4.42
3899
3955
3.181967
CTGCACGAGCTGTACGCC
61.182
66.667
6.36
0.00
42.74
5.68
3900
3956
3.914605
CTGCACGAGCTGTACGCCA
62.915
63.158
6.36
0.00
42.74
5.69
3901
3957
2.509336
GCACGAGCTGTACGCCAT
60.509
61.111
0.00
0.00
40.39
4.40
3902
3958
2.802667
GCACGAGCTGTACGCCATG
61.803
63.158
0.00
0.00
40.39
3.66
3903
3959
1.446099
CACGAGCTGTACGCCATGT
60.446
57.895
0.00
1.23
40.39
3.21
3904
3960
1.153823
ACGAGCTGTACGCCATGTC
60.154
57.895
0.00
0.00
40.39
3.06
3905
3961
2.224217
CGAGCTGTACGCCATGTCG
61.224
63.158
0.00
0.00
40.39
4.35
3906
3962
1.138883
GAGCTGTACGCCATGTCGA
59.861
57.895
1.83
0.00
40.39
4.20
3907
3963
0.457853
GAGCTGTACGCCATGTCGAA
60.458
55.000
1.83
0.00
40.39
3.71
3908
3964
0.458543
AGCTGTACGCCATGTCGAAG
60.459
55.000
1.83
0.00
40.39
3.79
3909
3965
0.457853
GCTGTACGCCATGTCGAAGA
60.458
55.000
1.83
0.00
0.00
2.87
3910
3966
1.990799
CTGTACGCCATGTCGAAGAA
58.009
50.000
1.83
0.00
39.69
2.52
3911
3967
1.920574
CTGTACGCCATGTCGAAGAAG
59.079
52.381
1.83
0.00
39.69
2.85
3912
3968
1.271379
TGTACGCCATGTCGAAGAAGT
59.729
47.619
1.83
0.00
39.69
3.01
3913
3969
1.918609
GTACGCCATGTCGAAGAAGTC
59.081
52.381
1.83
0.00
39.69
3.01
3914
3970
0.317160
ACGCCATGTCGAAGAAGTCA
59.683
50.000
1.83
0.00
39.69
3.41
3915
3971
0.994995
CGCCATGTCGAAGAAGTCAG
59.005
55.000
0.00
0.00
39.69
3.51
3916
3972
1.402852
CGCCATGTCGAAGAAGTCAGA
60.403
52.381
0.00
0.00
39.69
3.27
3917
3973
2.266554
GCCATGTCGAAGAAGTCAGAG
58.733
52.381
0.00
0.00
39.69
3.35
3918
3974
2.886081
CCATGTCGAAGAAGTCAGAGG
58.114
52.381
0.00
0.00
39.69
3.69
3919
3975
2.417924
CCATGTCGAAGAAGTCAGAGGG
60.418
54.545
0.00
0.00
39.69
4.30
3920
3976
1.257743
TGTCGAAGAAGTCAGAGGGG
58.742
55.000
0.00
0.00
39.69
4.79
3921
3977
0.108567
GTCGAAGAAGTCAGAGGGGC
60.109
60.000
0.00
0.00
39.69
5.80
3922
3978
1.219393
CGAAGAAGTCAGAGGGGCC
59.781
63.158
0.00
0.00
0.00
5.80
3923
3979
1.544825
CGAAGAAGTCAGAGGGGCCA
61.545
60.000
4.39
0.00
0.00
5.36
3924
3980
0.251634
GAAGAAGTCAGAGGGGCCAG
59.748
60.000
4.39
0.00
0.00
4.85
3925
3981
1.846712
AAGAAGTCAGAGGGGCCAGC
61.847
60.000
4.39
0.00
0.00
4.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
5
6
4.087892
AATCTGCAGCGAGGCCGT
62.088
61.111
9.47
0.00
38.24
5.68
6
7
3.570638
CAATCTGCAGCGAGGCCG
61.571
66.667
9.47
0.00
39.16
6.13
7
8
3.885521
GCAATCTGCAGCGAGGCC
61.886
66.667
9.47
0.00
44.26
5.19
14
15
3.818787
GGCCACCGCAATCTGCAG
61.819
66.667
7.63
7.63
45.36
4.41
15
16
3.942377
ATGGCCACCGCAATCTGCA
62.942
57.895
8.16
0.00
45.36
4.41
16
17
3.129913
GATGGCCACCGCAATCTGC
62.130
63.158
8.16
0.00
41.62
4.26
17
18
2.827051
CGATGGCCACCGCAATCTG
61.827
63.158
6.55
0.00
42.55
2.90
60
61
4.267928
CGAAGTAAACCATCGGATCTGAAC
59.732
45.833
8.65
0.81
33.15
3.18
95
96
6.261381
TGTGTCAAGCCGTCTTTTATAGTTTT
59.739
34.615
0.00
0.00
0.00
2.43
118
120
1.845627
CTGCACCACCATCCCTCTGT
61.846
60.000
0.00
0.00
0.00
3.41
155
158
1.560505
GGGATCCCAGCAACAAATGT
58.439
50.000
26.95
0.00
35.81
2.71
254
266
1.652947
ATAACCAACTCGGGTCAGGT
58.347
50.000
6.69
6.69
41.32
4.00
255
267
2.159000
GGTATAACCAACTCGGGTCAGG
60.159
54.545
5.38
5.38
41.32
3.86
345
363
6.018589
AGCAAGAATTTAGCTTTTCACCTC
57.981
37.500
0.00
0.00
34.37
3.85
359
377
2.699846
TCCAACCAGCAAAGCAAGAATT
59.300
40.909
0.00
0.00
0.00
2.17
372
390
2.428530
TCACTCTCATCGATCCAACCAG
59.571
50.000
0.00
0.00
0.00
4.00
388
408
1.896220
TCAATGCCCAAGTGTCACTC
58.104
50.000
5.82
0.00
0.00
3.51
537
561
9.610705
CATATAAGACCAAAGCTATGCATAGAT
57.389
33.333
33.10
26.44
32.05
1.98
593
624
8.585471
AATTCACACAATCAATATCAACTCCT
57.415
30.769
0.00
0.00
0.00
3.69
594
625
8.680903
AGAATTCACACAATCAATATCAACTCC
58.319
33.333
8.44
0.00
0.00
3.85
615
646
5.361285
ACTCGGTCTCTGCATAACTAGAATT
59.639
40.000
0.00
0.00
0.00
2.17
673
709
7.038154
TCCAACTTCTTTTGATAAAGTGTGG
57.962
36.000
0.00
0.00
41.25
4.17
675
711
7.881775
ACTCCAACTTCTTTTGATAAAGTGT
57.118
32.000
0.00
0.00
41.25
3.55
677
713
9.274206
GACTACTCCAACTTCTTTTGATAAAGT
57.726
33.333
0.00
0.00
41.25
2.66
698
734
4.204799
AGCGGGGAAAATTAATGGACTAC
58.795
43.478
0.00
0.00
0.00
2.73
700
736
3.288092
GAGCGGGGAAAATTAATGGACT
58.712
45.455
0.00
0.00
0.00
3.85
706
742
2.086094
GAACCGAGCGGGGAAAATTAA
58.914
47.619
14.07
0.00
41.60
1.40
710
746
2.032987
GGAACCGAGCGGGGAAAA
59.967
61.111
14.07
0.00
41.60
2.29
734
770
3.118149
ACCGAGCGGGGAGTATTATTTTT
60.118
43.478
14.07
0.00
41.60
1.94
735
771
2.436911
ACCGAGCGGGGAGTATTATTTT
59.563
45.455
14.07
0.00
41.60
1.82
736
772
2.044758
ACCGAGCGGGGAGTATTATTT
58.955
47.619
14.07
0.00
41.60
1.40
737
773
1.713297
ACCGAGCGGGGAGTATTATT
58.287
50.000
14.07
0.00
41.60
1.40
738
774
1.713297
AACCGAGCGGGGAGTATTAT
58.287
50.000
14.07
0.00
41.60
1.28
739
775
2.363306
TAACCGAGCGGGGAGTATTA
57.637
50.000
14.07
0.00
41.60
0.98
740
776
1.713297
ATAACCGAGCGGGGAGTATT
58.287
50.000
14.07
0.00
41.60
1.89
741
777
1.713297
AATAACCGAGCGGGGAGTAT
58.287
50.000
14.07
2.90
41.60
2.12
742
778
1.488390
AAATAACCGAGCGGGGAGTA
58.512
50.000
14.07
0.63
41.60
2.59
743
779
0.616891
AAAATAACCGAGCGGGGAGT
59.383
50.000
14.07
0.00
41.60
3.85
744
780
1.746470
AAAAATAACCGAGCGGGGAG
58.254
50.000
14.07
0.00
41.60
4.30
798
834
2.268920
GGGATGCCTCGCTTGTCA
59.731
61.111
0.00
0.00
0.00
3.58
822
858
2.740055
GTGTGGACTGGAGCAGCG
60.740
66.667
0.00
0.00
34.37
5.18
839
875
2.711711
CCAGATTGGCATCTTCGGG
58.288
57.895
0.00
0.00
37.71
5.14
858
894
0.601311
GGGCTTCCGATCGAGATTGG
60.601
60.000
18.66
12.19
42.60
3.16
892
928
2.793299
ATGGGGTGGGGAATTTATGG
57.207
50.000
0.00
0.00
0.00
2.74
893
929
6.239858
GGAATTTATGGGGTGGGGAATTTATG
60.240
42.308
0.00
0.00
0.00
1.90
894
930
5.849475
GGAATTTATGGGGTGGGGAATTTAT
59.151
40.000
0.00
0.00
0.00
1.40
895
931
5.220521
GGAATTTATGGGGTGGGGAATTTA
58.779
41.667
0.00
0.00
0.00
1.40
896
932
4.044308
GGAATTTATGGGGTGGGGAATTT
58.956
43.478
0.00
0.00
0.00
1.82
897
933
3.635004
GGGAATTTATGGGGTGGGGAATT
60.635
47.826
0.00
0.00
0.00
2.17
898
934
2.090210
GGGAATTTATGGGGTGGGGAAT
60.090
50.000
0.00
0.00
0.00
3.01
899
935
1.292546
GGGAATTTATGGGGTGGGGAA
59.707
52.381
0.00
0.00
0.00
3.97
900
936
0.938192
GGGAATTTATGGGGTGGGGA
59.062
55.000
0.00
0.00
0.00
4.81
901
937
0.639392
TGGGAATTTATGGGGTGGGG
59.361
55.000
0.00
0.00
0.00
4.96
902
938
1.691163
GGTGGGAATTTATGGGGTGGG
60.691
57.143
0.00
0.00
0.00
4.61
903
939
1.691163
GGGTGGGAATTTATGGGGTGG
60.691
57.143
0.00
0.00
0.00
4.61
904
940
1.691163
GGGGTGGGAATTTATGGGGTG
60.691
57.143
0.00
0.00
0.00
4.61
905
941
0.639943
GGGGTGGGAATTTATGGGGT
59.360
55.000
0.00
0.00
0.00
4.95
906
942
0.639392
TGGGGTGGGAATTTATGGGG
59.361
55.000
0.00
0.00
0.00
4.96
907
943
2.793299
ATGGGGTGGGAATTTATGGG
57.207
50.000
0.00
0.00
0.00
4.00
908
944
6.762077
AATTTATGGGGTGGGAATTTATGG
57.238
37.500
0.00
0.00
0.00
2.74
909
945
8.491045
ACTAATTTATGGGGTGGGAATTTATG
57.509
34.615
0.00
0.00
0.00
1.90
910
946
7.450323
CGACTAATTTATGGGGTGGGAATTTAT
59.550
37.037
0.00
0.00
0.00
1.40
911
947
6.773685
CGACTAATTTATGGGGTGGGAATTTA
59.226
38.462
0.00
0.00
0.00
1.40
912
948
5.596772
CGACTAATTTATGGGGTGGGAATTT
59.403
40.000
0.00
0.00
0.00
1.82
913
949
5.137551
CGACTAATTTATGGGGTGGGAATT
58.862
41.667
0.00
0.00
0.00
2.17
914
950
4.167307
ACGACTAATTTATGGGGTGGGAAT
59.833
41.667
0.00
0.00
0.00
3.01
915
951
3.524380
ACGACTAATTTATGGGGTGGGAA
59.476
43.478
0.00
0.00
0.00
3.97
916
952
3.116959
ACGACTAATTTATGGGGTGGGA
58.883
45.455
0.00
0.00
0.00
4.37
917
953
3.118186
TCACGACTAATTTATGGGGTGGG
60.118
47.826
0.00
0.00
0.00
4.61
918
954
4.145365
TCACGACTAATTTATGGGGTGG
57.855
45.455
0.00
0.00
0.00
4.61
919
955
5.364778
TGATCACGACTAATTTATGGGGTG
58.635
41.667
0.00
0.00
0.00
4.61
920
956
5.611374
CTGATCACGACTAATTTATGGGGT
58.389
41.667
0.00
0.00
0.00
4.95
921
957
4.452455
GCTGATCACGACTAATTTATGGGG
59.548
45.833
0.00
0.00
0.00
4.96
922
958
4.452455
GGCTGATCACGACTAATTTATGGG
59.548
45.833
0.00
0.00
0.00
4.00
937
973
0.608856
AATGGTTGTGCGGCTGATCA
60.609
50.000
0.00
0.00
0.00
2.92
1104
1140
1.502990
CGTTGGTTGATGTGGTCGCA
61.503
55.000
0.00
0.00
0.00
5.10
1108
1144
0.398696
TAGGCGTTGGTTGATGTGGT
59.601
50.000
0.00
0.00
0.00
4.16
1112
1148
1.086696
CCAGTAGGCGTTGGTTGATG
58.913
55.000
0.00
0.00
0.00
3.07
1128
1164
0.401738
TTCCACTTGGCTTCCTCCAG
59.598
55.000
0.00
0.00
37.44
3.86
1196
1235
1.004560
TGCGACAAGGAGAAGCAGG
60.005
57.895
0.00
0.00
33.57
4.85
1200
1239
0.390472
GGGACTGCGACAAGGAGAAG
60.390
60.000
0.00
0.00
41.23
2.85
1212
1251
1.682323
GTAGTGGTAGCTAGGGACTGC
59.318
57.143
0.00
0.00
41.52
4.40
1239
1278
2.588877
GCGTCCATGGCTGCGTAT
60.589
61.111
6.96
0.00
0.00
3.06
1295
1334
3.458163
CGTAGAGGAAGGCGGCCA
61.458
66.667
23.09
0.00
0.00
5.36
1299
1338
2.278013
GCGACGTAGAGGAAGGCG
60.278
66.667
0.00
0.00
0.00
5.52
1302
1341
1.139095
GGTGGCGACGTAGAGGAAG
59.861
63.158
0.00
0.00
0.00
3.46
1553
1592
4.570663
CGTCCGGGATGTCTCGGC
62.571
72.222
16.33
10.43
45.31
5.54
1782
1821
0.036732
TGGTGGTGAGGAACATCTGC
59.963
55.000
0.00
0.00
0.00
4.26
1830
1869
0.742505
TCTCGGTACCTATGTTGCCG
59.257
55.000
10.90
7.26
40.72
5.69
1842
1881
3.200593
GTCCGCTCGCTCTCGGTA
61.201
66.667
7.16
0.00
45.44
4.02
2202
2241
3.308323
CGAGAGTAGGTGTACGGAACTAC
59.692
52.174
1.08
1.08
36.84
2.73
2273
2313
4.435137
TCCCCCAACTACCATATCCTATG
58.565
47.826
0.00
0.00
0.00
2.23
2286
2326
0.471211
TCGTCTCTGTTCCCCCAACT
60.471
55.000
0.00
0.00
35.79
3.16
2295
2335
0.659427
TGTTCGACGTCGTCTCTGTT
59.341
50.000
34.40
0.00
40.80
3.16
2513
2553
2.250485
CGACGGTCGTGTCTTCGT
59.750
61.111
21.68
0.00
36.71
3.85
2556
2596
3.684315
GCGTTGACGAACACGCGA
61.684
61.111
15.93
0.00
43.02
5.87
2580
2620
1.121407
CAGCGGGGTCCCTCATGATA
61.121
60.000
8.15
0.00
0.00
2.15
2610
2650
2.513897
GGGATGAACTTCGCCGGG
60.514
66.667
2.18
0.00
0.00
5.73
2972
3012
2.961062
AGGGGAAATGTATTGCATGCTC
59.039
45.455
20.33
4.95
37.96
4.26
3042
3082
5.355630
TGCTACTACTACAGAAGAAGCAGAG
59.644
44.000
0.00
0.00
0.00
3.35
3188
3233
4.052159
CGAGAGGCTCAATACAACATCT
57.948
45.455
18.26
0.00
0.00
2.90
3211
3256
8.752187
TCAAACCTTGTACTCTATATAAACCGT
58.248
33.333
0.00
0.00
0.00
4.83
3248
3294
4.647399
GTGTGCCTTATCTCTAAGAGAGGT
59.353
45.833
8.78
4.51
42.26
3.85
3255
3301
5.791336
ATCATCGTGTGCCTTATCTCTAA
57.209
39.130
0.00
0.00
0.00
2.10
3269
3315
8.916654
GGTAGACTATGATTTGTAATCATCGTG
58.083
37.037
18.47
12.68
39.30
4.35
3271
3317
9.645059
ATGGTAGACTATGATTTGTAATCATCG
57.355
33.333
15.91
13.03
39.30
3.84
3311
3358
5.278061
GGGGGATGTTAGAGTATATAGGCA
58.722
45.833
0.00
0.00
0.00
4.75
3352
3400
0.607489
ATGCTCCTTTTGTCTGCGCT
60.607
50.000
9.73
0.00
0.00
5.92
3363
3411
4.514577
CCGTCCGCGATGCTCCTT
62.515
66.667
8.23
0.00
41.33
3.36
3370
3418
4.175489
CGTCTGACCGTCCGCGAT
62.175
66.667
8.23
0.00
41.33
4.58
3387
3440
0.032815
GTCGGCTGCTATTCTCTCCC
59.967
60.000
0.00
0.00
0.00
4.30
3495
3549
2.687297
AGGGCTATCATCTGCTTGAGA
58.313
47.619
0.00
0.00
34.25
3.27
3531
3585
1.268352
CATCCTACGCTCTCAGCTACC
59.732
57.143
0.00
0.00
39.60
3.18
3589
3643
2.782222
CCGACCCGACATCGACCAT
61.782
63.158
2.09
0.00
42.25
3.55
3612
3666
1.593296
GCGACTTCCTAGACACCGGT
61.593
60.000
0.00
0.00
0.00
5.28
3680
3735
0.389948
GTGCACCCCTACTTCGACAG
60.390
60.000
5.22
0.00
0.00
3.51
3704
3759
2.611518
CCTCGTCAACACCATCTTCTC
58.388
52.381
0.00
0.00
0.00
2.87
3741
3797
3.256960
ATGTGTCCCCGGGCTTGT
61.257
61.111
17.73
0.00
0.00
3.16
3780
3836
0.183492
ATGCCCCGTGCTGACAATAT
59.817
50.000
0.00
0.00
42.00
1.28
3782
3838
2.048023
CATGCCCCGTGCTGACAAT
61.048
57.895
0.00
0.00
42.00
2.71
3786
3842
2.946172
CTATGCATGCCCCGTGCTGA
62.946
60.000
16.68
0.00
45.53
4.26
3793
3849
1.598130
GTCCGTCTATGCATGCCCC
60.598
63.158
16.68
0.00
0.00
5.80
3821
3877
1.154225
GGTGCGGCATTTCGTCAAG
60.154
57.895
5.72
0.00
0.00
3.02
3855
3911
1.685765
TCTACGGATGCCTGGTGCT
60.686
57.895
0.00
0.00
42.00
4.40
3856
3912
1.521681
GTCTACGGATGCCTGGTGC
60.522
63.158
0.00
0.00
41.77
5.01
3857
3913
0.249120
TTGTCTACGGATGCCTGGTG
59.751
55.000
0.00
0.00
0.00
4.17
3858
3914
0.537188
CTTGTCTACGGATGCCTGGT
59.463
55.000
0.00
0.00
0.00
4.00
3859
3915
0.179073
CCTTGTCTACGGATGCCTGG
60.179
60.000
0.00
0.00
0.00
4.45
3860
3916
0.179073
CCCTTGTCTACGGATGCCTG
60.179
60.000
0.00
0.00
0.00
4.85
3861
3917
0.325296
TCCCTTGTCTACGGATGCCT
60.325
55.000
0.00
0.00
0.00
4.75
3862
3918
0.179081
GTCCCTTGTCTACGGATGCC
60.179
60.000
0.00
0.00
0.00
4.40
3863
3919
0.179081
GGTCCCTTGTCTACGGATGC
60.179
60.000
0.00
0.00
0.00
3.91
3864
3920
1.137086
CAGGTCCCTTGTCTACGGATG
59.863
57.143
0.00
0.00
0.00
3.51
3865
3921
1.486211
CAGGTCCCTTGTCTACGGAT
58.514
55.000
0.00
0.00
0.00
4.18
3866
3922
1.255667
GCAGGTCCCTTGTCTACGGA
61.256
60.000
0.00
0.00
0.00
4.69
3867
3923
1.218316
GCAGGTCCCTTGTCTACGG
59.782
63.158
0.00
0.00
0.00
4.02
3868
3924
0.389948
GTGCAGGTCCCTTGTCTACG
60.390
60.000
0.00
0.00
0.00
3.51
3869
3925
0.389948
CGTGCAGGTCCCTTGTCTAC
60.390
60.000
0.00
0.00
0.00
2.59
3870
3926
0.541063
TCGTGCAGGTCCCTTGTCTA
60.541
55.000
6.26
0.00
0.00
2.59
3871
3927
1.821061
CTCGTGCAGGTCCCTTGTCT
61.821
60.000
6.26
0.00
0.00
3.41
3872
3928
1.374758
CTCGTGCAGGTCCCTTGTC
60.375
63.158
6.26
0.00
0.00
3.18
3873
3929
2.743718
CTCGTGCAGGTCCCTTGT
59.256
61.111
6.26
0.00
0.00
3.16
3874
3930
2.743928
GCTCGTGCAGGTCCCTTG
60.744
66.667
6.26
0.00
39.41
3.61
3875
3931
2.925170
AGCTCGTGCAGGTCCCTT
60.925
61.111
12.58
0.00
42.74
3.95
3876
3932
3.699894
CAGCTCGTGCAGGTCCCT
61.700
66.667
12.58
0.00
42.74
4.20
3877
3933
2.646175
TACAGCTCGTGCAGGTCCC
61.646
63.158
12.58
0.00
42.74
4.46
3878
3934
1.446272
GTACAGCTCGTGCAGGTCC
60.446
63.158
12.58
0.00
42.74
4.46
3879
3935
1.801913
CGTACAGCTCGTGCAGGTC
60.802
63.158
12.58
0.06
42.74
3.85
3880
3936
2.258591
CGTACAGCTCGTGCAGGT
59.741
61.111
12.58
11.54
42.74
4.00
3881
3937
3.181967
GCGTACAGCTCGTGCAGG
61.182
66.667
12.58
0.00
44.04
4.85
3891
3947
1.920574
CTTCTTCGACATGGCGTACAG
59.079
52.381
22.59
15.32
0.00
2.74
3892
3948
1.271379
ACTTCTTCGACATGGCGTACA
59.729
47.619
22.59
5.43
0.00
2.90
3893
3949
1.918609
GACTTCTTCGACATGGCGTAC
59.081
52.381
22.59
0.00
0.00
3.67
3894
3950
1.542472
TGACTTCTTCGACATGGCGTA
59.458
47.619
22.59
11.10
0.00
4.42
3895
3951
0.317160
TGACTTCTTCGACATGGCGT
59.683
50.000
22.59
0.00
0.00
5.68
3896
3952
0.994995
CTGACTTCTTCGACATGGCG
59.005
55.000
16.88
16.88
0.00
5.69
3897
3953
2.266554
CTCTGACTTCTTCGACATGGC
58.733
52.381
0.00
0.00
0.00
4.40
3898
3954
2.417924
CCCTCTGACTTCTTCGACATGG
60.418
54.545
0.00
0.00
0.00
3.66
3899
3955
2.417924
CCCCTCTGACTTCTTCGACATG
60.418
54.545
0.00
0.00
0.00
3.21
3900
3956
1.827969
CCCCTCTGACTTCTTCGACAT
59.172
52.381
0.00
0.00
0.00
3.06
3901
3957
1.257743
CCCCTCTGACTTCTTCGACA
58.742
55.000
0.00
0.00
0.00
4.35
3902
3958
0.108567
GCCCCTCTGACTTCTTCGAC
60.109
60.000
0.00
0.00
0.00
4.20
3903
3959
1.258445
GGCCCCTCTGACTTCTTCGA
61.258
60.000
0.00
0.00
0.00
3.71
3904
3960
1.219393
GGCCCCTCTGACTTCTTCG
59.781
63.158
0.00
0.00
0.00
3.79
3905
3961
0.251634
CTGGCCCCTCTGACTTCTTC
59.748
60.000
0.00
0.00
0.00
2.87
3906
3962
1.846712
GCTGGCCCCTCTGACTTCTT
61.847
60.000
0.00
0.00
0.00
2.52
3907
3963
2.297129
GCTGGCCCCTCTGACTTCT
61.297
63.158
0.00
0.00
0.00
2.85
3908
3964
2.270527
GCTGGCCCCTCTGACTTC
59.729
66.667
0.00
0.00
0.00
3.01
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.