Multiple sequence alignment - TraesCS7D01G271600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G271600 chr7D 100.000 3926 0 0 1 3926 261117178 261113253 0.000000e+00 7251.0
1 TraesCS7D01G271600 chr7D 86.533 698 84 10 3162 3854 402574009 402574701 0.000000e+00 760.0
2 TraesCS7D01G271600 chr7D 86.364 704 82 12 3159 3853 4651649 4650951 0.000000e+00 756.0
3 TraesCS7D01G271600 chr7D 85.220 636 78 9 19 640 611010268 611009635 1.190000e-179 640.0
4 TraesCS7D01G271600 chr7B 96.132 2249 70 6 918 3159 240332788 240330550 0.000000e+00 3655.0
5 TraesCS7D01G271600 chr7B 86.514 697 88 5 3160 3854 85331985 85332677 0.000000e+00 761.0
6 TraesCS7D01G271600 chr7B 86.467 702 78 14 3159 3852 749122278 749122970 0.000000e+00 754.0
7 TraesCS7D01G271600 chr7B 88.000 475 51 5 258 726 240333391 240332917 1.230000e-154 556.0
8 TraesCS7D01G271600 chr7B 76.101 636 121 26 4 618 732634264 732634889 1.770000e-78 303.0
9 TraesCS7D01G271600 chr7A 95.887 2237 72 6 918 3151 284526284 284528503 0.000000e+00 3603.0
10 TraesCS7D01G271600 chr7A 86.402 706 77 16 3159 3855 20990949 20990254 0.000000e+00 754.0
11 TraesCS7D01G271600 chr7A 84.119 636 73 20 22 640 408691867 408691243 1.220000e-164 590.0
12 TraesCS7D01G271600 chr7A 89.231 65 7 0 2429 2493 706035830 706035766 9.040000e-12 82.4
13 TraesCS7D01G271600 chr1D 88.218 696 69 7 3162 3855 480542214 480541530 0.000000e+00 819.0
14 TraesCS7D01G271600 chr2B 87.749 702 80 5 3156 3855 579916115 579916812 0.000000e+00 815.0
15 TraesCS7D01G271600 chr2B 76.769 650 122 23 28 655 673955940 673956582 1.750000e-88 337.0
16 TraesCS7D01G271600 chr2D 87.518 705 76 9 3159 3855 81324163 81323463 0.000000e+00 804.0
17 TraesCS7D01G271600 chr2D 87.358 617 60 12 38 640 73137535 73136923 0.000000e+00 691.0
18 TraesCS7D01G271600 chr2D 94.521 73 4 0 3854 3926 189373246 189373174 3.210000e-21 113.0
19 TraesCS7D01G271600 chr3D 86.981 699 81 8 3162 3855 305633665 305634358 0.000000e+00 778.0
20 TraesCS7D01G271600 chr4D 85.063 636 77 13 22 640 47555681 47555047 1.990000e-177 632.0
21 TraesCS7D01G271600 chr4D 94.521 73 4 0 3854 3926 121536761 121536833 3.210000e-21 113.0
22 TraesCS7D01G271600 chr5D 84.248 565 74 9 86 637 437532691 437533253 1.610000e-148 536.0
23 TraesCS7D01G271600 chr5D 94.444 72 4 0 3854 3925 213485718 213485789 1.150000e-20 111.0
24 TraesCS7D01G271600 chr4A 82.399 642 85 16 8 633 704622282 704622911 5.770000e-148 534.0
25 TraesCS7D01G271600 chrUn 85.170 499 60 8 151 637 30115057 30115553 2.110000e-137 499.0
26 TraesCS7D01G271600 chrUn 95.833 72 2 1 3854 3925 38773735 38773805 8.910000e-22 115.0
27 TraesCS7D01G271600 chrUn 94.521 73 4 0 3854 3926 104463566 104463494 3.210000e-21 113.0
28 TraesCS7D01G271600 chrUn 89.831 59 6 0 2435 2493 293161373 293161315 4.210000e-10 76.8
29 TraesCS7D01G271600 chrUn 86.765 68 9 0 2426 2493 409868750 409868817 4.210000e-10 76.8
30 TraesCS7D01G271600 chr6A 85.031 481 60 6 19 487 425304635 425305115 2.740000e-131 479.0
31 TraesCS7D01G271600 chr3A 95.890 73 3 0 3854 3926 549325935 549325863 6.890000e-23 119.0
32 TraesCS7D01G271600 chr5B 94.595 74 4 0 3853 3926 129725908 129725835 8.910000e-22 115.0
33 TraesCS7D01G271600 chr3B 94.521 73 4 0 3854 3926 676259620 676259692 3.210000e-21 113.0
34 TraesCS7D01G271600 chr1B 94.521 73 3 1 3854 3926 679528754 679528683 1.150000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G271600 chr7D 261113253 261117178 3925 True 7251.0 7251 100.000 1 3926 1 chr7D.!!$R2 3925
1 TraesCS7D01G271600 chr7D 402574009 402574701 692 False 760.0 760 86.533 3162 3854 1 chr7D.!!$F1 692
2 TraesCS7D01G271600 chr7D 4650951 4651649 698 True 756.0 756 86.364 3159 3853 1 chr7D.!!$R1 694
3 TraesCS7D01G271600 chr7D 611009635 611010268 633 True 640.0 640 85.220 19 640 1 chr7D.!!$R3 621
4 TraesCS7D01G271600 chr7B 240330550 240333391 2841 True 2105.5 3655 92.066 258 3159 2 chr7B.!!$R1 2901
5 TraesCS7D01G271600 chr7B 85331985 85332677 692 False 761.0 761 86.514 3160 3854 1 chr7B.!!$F1 694
6 TraesCS7D01G271600 chr7B 749122278 749122970 692 False 754.0 754 86.467 3159 3852 1 chr7B.!!$F3 693
7 TraesCS7D01G271600 chr7B 732634264 732634889 625 False 303.0 303 76.101 4 618 1 chr7B.!!$F2 614
8 TraesCS7D01G271600 chr7A 284526284 284528503 2219 False 3603.0 3603 95.887 918 3151 1 chr7A.!!$F1 2233
9 TraesCS7D01G271600 chr7A 20990254 20990949 695 True 754.0 754 86.402 3159 3855 1 chr7A.!!$R1 696
10 TraesCS7D01G271600 chr7A 408691243 408691867 624 True 590.0 590 84.119 22 640 1 chr7A.!!$R2 618
11 TraesCS7D01G271600 chr1D 480541530 480542214 684 True 819.0 819 88.218 3162 3855 1 chr1D.!!$R1 693
12 TraesCS7D01G271600 chr2B 579916115 579916812 697 False 815.0 815 87.749 3156 3855 1 chr2B.!!$F1 699
13 TraesCS7D01G271600 chr2B 673955940 673956582 642 False 337.0 337 76.769 28 655 1 chr2B.!!$F2 627
14 TraesCS7D01G271600 chr2D 81323463 81324163 700 True 804.0 804 87.518 3159 3855 1 chr2D.!!$R2 696
15 TraesCS7D01G271600 chr2D 73136923 73137535 612 True 691.0 691 87.358 38 640 1 chr2D.!!$R1 602
16 TraesCS7D01G271600 chr3D 305633665 305634358 693 False 778.0 778 86.981 3162 3855 1 chr3D.!!$F1 693
17 TraesCS7D01G271600 chr4D 47555047 47555681 634 True 632.0 632 85.063 22 640 1 chr4D.!!$R1 618
18 TraesCS7D01G271600 chr5D 437532691 437533253 562 False 536.0 536 84.248 86 637 1 chr5D.!!$F2 551
19 TraesCS7D01G271600 chr4A 704622282 704622911 629 False 534.0 534 82.399 8 633 1 chr4A.!!$F1 625


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 939 0.105194 CCCCCACCCCATAAATTCCC 60.105 60.0 0.0 0.0 0.00 3.97 F
904 940 0.105194 CCCCACCCCATAAATTCCCC 60.105 60.0 0.0 0.0 0.00 4.81 F
909 945 0.105194 CCCCATAAATTCCCCACCCC 60.105 60.0 0.0 0.0 0.00 4.95 F
1241 1280 0.387929 GCTACCACTACCGCAGCATA 59.612 55.0 0.0 0.0 32.46 3.14 F
2046 2085 0.464013 TAGAGAAGAGGGTCGAGGCG 60.464 60.0 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1821 0.036732 TGGTGGTGAGGAACATCTGC 59.963 55.0 0.00 0.0 0.00 4.26 R
2286 2326 0.471211 TCGTCTCTGTTCCCCCAACT 60.471 55.0 0.00 0.0 35.79 3.16 R
2295 2335 0.659427 TGTTCGACGTCGTCTCTGTT 59.341 50.0 34.40 0.0 40.80 3.16 R
2580 2620 1.121407 CAGCGGGGTCCCTCATGATA 61.121 60.0 8.15 0.0 0.00 2.15 R
3387 3440 0.032815 GTCGGCTGCTATTCTCTCCC 59.967 60.0 0.00 0.0 0.00 4.30 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.389576 CAACAACGGCCTCGCTGC 62.390 66.667 0.00 0.00 38.71 5.25
95 96 4.221924 TGGTTTACTTCGATGGTGAGATGA 59.778 41.667 3.12 0.00 0.00 2.92
118 120 6.483974 TGAAAACTATAAAAGACGGCTTGACA 59.516 34.615 3.03 0.00 33.79 3.58
140 142 4.408821 GGGATGGTGGTGCAGCGA 62.409 66.667 11.91 0.00 34.27 4.93
155 158 0.108377 AGCGACGTTGGTGCATATCA 60.108 50.000 6.72 0.00 0.00 2.15
173 177 2.170166 TCACATTTGTTGCTGGGATCC 58.830 47.619 1.92 1.92 0.00 3.36
184 188 0.618458 CTGGGATCCCGGAAAAGTGA 59.382 55.000 33.38 7.67 45.10 3.41
345 363 4.222114 GTTTTGCTTGGACTGATTCTTCG 58.778 43.478 0.00 0.00 0.00 3.79
359 377 5.547465 TGATTCTTCGAGGTGAAAAGCTAA 58.453 37.500 0.00 0.00 35.79 3.09
388 408 2.028420 TTGCTGGTTGGATCGATGAG 57.972 50.000 0.54 0.00 0.00 2.90
395 415 2.166459 GGTTGGATCGATGAGAGTGACA 59.834 50.000 0.54 0.00 0.00 3.58
400 420 3.443037 GATCGATGAGAGTGACACTTGG 58.557 50.000 10.01 0.00 0.00 3.61
615 646 7.619965 TGTAGGAGTTGATATTGATTGTGTGA 58.380 34.615 0.00 0.00 0.00 3.58
641 672 4.815308 TCTAGTTATGCAGAGACCGAGTAC 59.185 45.833 0.00 0.00 0.00 2.73
642 673 3.622630 AGTTATGCAGAGACCGAGTACT 58.377 45.455 0.00 0.00 0.00 2.73
644 675 5.191426 AGTTATGCAGAGACCGAGTACTTA 58.809 41.667 0.00 0.00 0.00 2.24
645 676 5.828859 AGTTATGCAGAGACCGAGTACTTAT 59.171 40.000 0.00 0.00 0.00 1.73
646 677 6.996879 AGTTATGCAGAGACCGAGTACTTATA 59.003 38.462 0.00 0.00 0.00 0.98
673 709 9.638239 TGTTTGTAATTCTGAGCCAATAAAATC 57.362 29.630 0.00 0.00 0.00 2.17
675 711 7.953005 TGTAATTCTGAGCCAATAAAATCCA 57.047 32.000 0.00 0.00 0.00 3.41
677 713 6.855763 AATTCTGAGCCAATAAAATCCACA 57.144 33.333 0.00 0.00 0.00 4.17
698 734 7.013274 TCCACACTTTATCAAAAGAAGTTGGAG 59.987 37.037 4.95 0.00 44.14 3.86
700 736 8.836413 CACACTTTATCAAAAGAAGTTGGAGTA 58.164 33.333 4.95 0.00 44.14 2.59
718 754 4.820173 GGAGTAGTCCATTAATTTTCCCCG 59.180 45.833 12.02 0.00 43.31 5.73
719 755 4.204799 AGTAGTCCATTAATTTTCCCCGC 58.795 43.478 0.00 0.00 0.00 6.13
720 756 3.382083 AGTCCATTAATTTTCCCCGCT 57.618 42.857 0.00 0.00 0.00 5.52
721 757 3.288092 AGTCCATTAATTTTCCCCGCTC 58.712 45.455 0.00 0.00 0.00 5.03
722 758 2.032924 GTCCATTAATTTTCCCCGCTCG 59.967 50.000 0.00 0.00 0.00 5.03
723 759 1.336755 CCATTAATTTTCCCCGCTCGG 59.663 52.381 0.48 0.48 0.00 4.63
724 760 2.021457 CATTAATTTTCCCCGCTCGGT 58.979 47.619 7.59 0.00 0.00 4.69
725 761 2.203470 TTAATTTTCCCCGCTCGGTT 57.797 45.000 7.59 0.00 0.00 4.44
726 762 1.741528 TAATTTTCCCCGCTCGGTTC 58.258 50.000 7.59 0.00 0.00 3.62
727 763 0.963856 AATTTTCCCCGCTCGGTTCC 60.964 55.000 7.59 0.00 0.00 3.62
728 764 2.831894 ATTTTCCCCGCTCGGTTCCC 62.832 60.000 7.59 0.00 0.00 3.97
822 858 2.174319 GCGAGGCATCCCGTTCTTC 61.174 63.158 0.00 0.00 35.76 2.87
839 875 2.715532 TTCGCTGCTCCAGTCCACAC 62.716 60.000 0.00 0.00 33.43 3.82
895 931 3.021263 GCACTACCCCCACCCCAT 61.021 66.667 0.00 0.00 0.00 4.00
896 932 1.694882 GCACTACCCCCACCCCATA 60.695 63.158 0.00 0.00 0.00 2.74
897 933 1.283381 GCACTACCCCCACCCCATAA 61.283 60.000 0.00 0.00 0.00 1.90
898 934 1.300927 CACTACCCCCACCCCATAAA 58.699 55.000 0.00 0.00 0.00 1.40
899 935 1.856920 CACTACCCCCACCCCATAAAT 59.143 52.381 0.00 0.00 0.00 1.40
900 936 2.246327 CACTACCCCCACCCCATAAATT 59.754 50.000 0.00 0.00 0.00 1.82
901 937 2.516702 ACTACCCCCACCCCATAAATTC 59.483 50.000 0.00 0.00 0.00 2.17
902 938 0.639943 ACCCCCACCCCATAAATTCC 59.360 55.000 0.00 0.00 0.00 3.01
903 939 0.105194 CCCCCACCCCATAAATTCCC 60.105 60.000 0.00 0.00 0.00 3.97
904 940 0.105194 CCCCACCCCATAAATTCCCC 60.105 60.000 0.00 0.00 0.00 4.81
905 941 0.639392 CCCACCCCATAAATTCCCCA 59.361 55.000 0.00 0.00 0.00 4.96
906 942 1.691163 CCCACCCCATAAATTCCCCAC 60.691 57.143 0.00 0.00 0.00 4.61
907 943 1.691163 CCACCCCATAAATTCCCCACC 60.691 57.143 0.00 0.00 0.00 4.61
908 944 0.639943 ACCCCATAAATTCCCCACCC 59.360 55.000 0.00 0.00 0.00 4.61
909 945 0.105194 CCCCATAAATTCCCCACCCC 60.105 60.000 0.00 0.00 0.00 4.95
910 946 0.639392 CCCATAAATTCCCCACCCCA 59.361 55.000 0.00 0.00 0.00 4.96
911 947 1.222817 CCCATAAATTCCCCACCCCAT 59.777 52.381 0.00 0.00 0.00 4.00
912 948 2.452823 CCCATAAATTCCCCACCCCATA 59.547 50.000 0.00 0.00 0.00 2.74
913 949 3.116551 CCCATAAATTCCCCACCCCATAA 60.117 47.826 0.00 0.00 0.00 1.90
914 950 4.561752 CCATAAATTCCCCACCCCATAAA 58.438 43.478 0.00 0.00 0.00 1.40
915 951 5.161886 CCATAAATTCCCCACCCCATAAAT 58.838 41.667 0.00 0.00 0.00 1.40
916 952 5.610557 CCATAAATTCCCCACCCCATAAATT 59.389 40.000 0.00 0.00 0.00 1.82
917 953 6.239858 CCATAAATTCCCCACCCCATAAATTC 60.240 42.308 0.00 0.00 0.00 2.17
918 954 2.858787 TTCCCCACCCCATAAATTCC 57.141 50.000 0.00 0.00 0.00 3.01
919 955 0.938192 TCCCCACCCCATAAATTCCC 59.062 55.000 0.00 0.00 0.00 3.97
920 956 0.639392 CCCCACCCCATAAATTCCCA 59.361 55.000 0.00 0.00 0.00 4.37
921 957 1.691163 CCCCACCCCATAAATTCCCAC 60.691 57.143 0.00 0.00 0.00 4.61
922 958 1.691163 CCCACCCCATAAATTCCCACC 60.691 57.143 0.00 0.00 0.00 4.61
937 973 3.116959 TCCCACCCCATAAATTAGTCGT 58.883 45.455 0.00 0.00 0.00 4.34
1112 1148 3.118454 CCGTCCACATGCGACCAC 61.118 66.667 7.70 0.00 0.00 4.16
1128 1164 0.802494 CCACATCAACCAACGCCTAC 59.198 55.000 0.00 0.00 0.00 3.18
1163 1202 0.521735 GGAAAACACCGCCTTGCTAG 59.478 55.000 0.00 0.00 0.00 3.42
1182 1221 3.147595 TCCAGTCAGGATCCGCCG 61.148 66.667 5.98 0.00 43.07 6.46
1212 1251 1.004560 TGCCTGCTTCTCCTTGTCG 60.005 57.895 0.00 0.00 0.00 4.35
1230 1269 1.038130 CGCAGTCCCTAGCTACCACT 61.038 60.000 0.00 0.00 0.00 4.00
1239 1278 0.681887 TAGCTACCACTACCGCAGCA 60.682 55.000 0.00 0.00 34.65 4.41
1241 1280 0.387929 GCTACCACTACCGCAGCATA 59.612 55.000 0.00 0.00 32.46 3.14
1557 1596 2.046864 CCTCGTCTTCTCCAGCCGA 61.047 63.158 0.00 0.00 0.00 5.54
1842 1881 3.334891 TGGGGCGGCAACATAGGT 61.335 61.111 12.47 0.00 0.00 3.08
1998 2037 4.415332 TCGGACGCGCTCAAGGAC 62.415 66.667 5.73 0.00 0.00 3.85
1999 2038 4.717629 CGGACGCGCTCAAGGACA 62.718 66.667 5.73 0.00 0.00 4.02
2046 2085 0.464013 TAGAGAAGAGGGTCGAGGCG 60.464 60.000 0.00 0.00 0.00 5.52
2273 2313 2.353889 GTGCATGTGTCCTGTGATGATC 59.646 50.000 0.00 0.00 0.00 2.92
2295 2335 4.110592 TCATAGGATATGGTAGTTGGGGGA 59.889 45.833 0.00 0.00 0.00 4.81
2580 2620 4.595538 TTCGTCAACGCGTGGGCT 62.596 61.111 17.46 0.00 39.60 5.19
2972 3012 0.994995 CTCCGTGCTCGAATCAGTTG 59.005 55.000 10.21 0.00 39.71 3.16
3042 3082 6.254804 AGTTTGTTTTTCTACGGTTGCAATTC 59.745 34.615 0.59 0.00 0.00 2.17
3188 3233 5.013079 AGAGGGATTGTTGCGGAATATGATA 59.987 40.000 0.00 0.00 0.00 2.15
3211 3256 2.176045 TGTTGTATTGAGCCTCTCGGA 58.824 47.619 0.00 0.00 32.35 4.55
3237 3283 8.752187 ACGGTTTATATAGAGTACAAGGTTTGA 58.248 33.333 0.00 0.00 0.00 2.69
3269 3315 5.862678 AACCTCTCTTAGAGATAAGGCAC 57.137 43.478 12.75 0.00 45.07 5.01
3271 3317 4.647399 ACCTCTCTTAGAGATAAGGCACAC 59.353 45.833 12.75 0.00 45.07 3.82
3363 3411 2.027073 CGGTAGCAGCGCAGACAAA 61.027 57.895 11.47 0.00 30.39 2.83
3370 3418 1.227943 AGCGCAGACAAAAGGAGCA 60.228 52.632 11.47 0.00 0.00 4.26
3387 3440 4.175489 ATCGCGGACGGTCAGACG 62.175 66.667 12.54 13.89 40.63 4.18
3495 3549 1.201880 GTAGAGGAAGCCGACGAGTTT 59.798 52.381 0.00 0.00 0.00 2.66
3521 3575 2.240667 AGCAGATGATAGCCCTTTGTGT 59.759 45.455 0.00 0.00 0.00 3.72
3589 3643 2.514510 TAGCCGTGCGAAGAATGCCA 62.515 55.000 0.00 0.00 0.00 4.92
3602 3656 0.815213 AATGCCATGGTCGATGTCGG 60.815 55.000 14.67 0.00 40.29 4.79
3612 3666 3.072468 GATGTCGGGTCGGGGTGA 61.072 66.667 0.00 0.00 0.00 4.02
3666 3720 1.810030 CAAGGAGGCGCCGAGTTAC 60.810 63.158 23.20 3.60 43.43 2.50
3680 3735 2.749839 TTACCATGGGCGCAGTGC 60.750 61.111 18.09 4.58 45.38 4.40
3704 3759 2.240162 GAAGTAGGGGTGCACCGGAG 62.240 65.000 29.08 0.00 41.60 4.63
3723 3779 3.506810 GAGAGAAGATGGTGTTGACGAG 58.493 50.000 0.00 0.00 0.00 4.18
3782 3838 2.202690 CGAAGGCACGCACCGATA 60.203 61.111 0.00 0.00 33.69 2.92
3786 3842 0.392461 AAGGCACGCACCGATATTGT 60.392 50.000 0.00 0.00 33.69 2.71
3793 3849 0.301687 GCACCGATATTGTCAGCACG 59.698 55.000 0.00 0.00 0.00 5.34
3821 3877 2.438583 CATAGACGGACGAAGACGAAC 58.561 52.381 0.00 0.00 42.66 3.95
3830 3886 2.785477 GACGAAGACGAACTTGACGAAA 59.215 45.455 12.00 0.00 42.66 3.46
3831 3887 3.378339 ACGAAGACGAACTTGACGAAAT 58.622 40.909 12.00 0.00 42.66 2.17
3862 3918 3.720601 TGCTAGGCCCAGCACCAG 61.721 66.667 22.80 0.00 46.41 4.00
3863 3919 4.496336 GCTAGGCCCAGCACCAGG 62.496 72.222 19.09 0.00 41.40 4.45
3873 3929 2.900273 GCACCAGGCATCCGTAGA 59.100 61.111 0.00 0.00 43.97 2.59
3874 3930 1.521681 GCACCAGGCATCCGTAGAC 60.522 63.158 0.00 0.00 43.97 2.59
3875 3931 1.897423 CACCAGGCATCCGTAGACA 59.103 57.895 0.00 0.00 0.00 3.41
3876 3932 0.249120 CACCAGGCATCCGTAGACAA 59.751 55.000 0.00 0.00 0.00 3.18
3877 3933 0.537188 ACCAGGCATCCGTAGACAAG 59.463 55.000 0.00 0.00 0.00 3.16
3878 3934 0.179073 CCAGGCATCCGTAGACAAGG 60.179 60.000 0.00 0.00 0.00 3.61
3879 3935 0.179073 CAGGCATCCGTAGACAAGGG 60.179 60.000 0.00 0.00 34.20 3.95
3880 3936 0.325296 AGGCATCCGTAGACAAGGGA 60.325 55.000 0.00 0.00 45.93 4.20
3881 3937 0.179081 GGCATCCGTAGACAAGGGAC 60.179 60.000 0.00 0.00 44.72 4.46
3882 3938 0.179081 GCATCCGTAGACAAGGGACC 60.179 60.000 0.00 0.00 44.72 4.46
3883 3939 1.486211 CATCCGTAGACAAGGGACCT 58.514 55.000 0.00 0.00 44.72 3.85
3884 3940 1.137086 CATCCGTAGACAAGGGACCTG 59.863 57.143 0.00 0.00 44.72 4.00
3885 3941 1.218316 CCGTAGACAAGGGACCTGC 59.782 63.158 0.00 0.00 34.90 4.85
3886 3942 1.541310 CCGTAGACAAGGGACCTGCA 61.541 60.000 0.00 0.00 34.90 4.41
3887 3943 0.389948 CGTAGACAAGGGACCTGCAC 60.390 60.000 0.00 0.00 0.00 4.57
3888 3944 0.389948 GTAGACAAGGGACCTGCACG 60.390 60.000 0.00 0.00 0.00 5.34
3889 3945 0.541063 TAGACAAGGGACCTGCACGA 60.541 55.000 0.00 0.00 0.00 4.35
3890 3946 1.374758 GACAAGGGACCTGCACGAG 60.375 63.158 0.00 0.00 0.00 4.18
3891 3947 2.743928 CAAGGGACCTGCACGAGC 60.744 66.667 0.00 0.00 42.57 5.03
3892 3948 2.925170 AAGGGACCTGCACGAGCT 60.925 61.111 6.36 0.00 42.74 4.09
3893 3949 3.245668 AAGGGACCTGCACGAGCTG 62.246 63.158 6.36 5.51 42.74 4.24
3894 3950 4.008933 GGGACCTGCACGAGCTGT 62.009 66.667 6.36 3.29 42.74 4.40
3895 3951 2.646175 GGGACCTGCACGAGCTGTA 61.646 63.158 6.36 0.00 42.74 2.74
3896 3952 1.446272 GGACCTGCACGAGCTGTAC 60.446 63.158 6.36 0.43 42.74 2.90
3897 3953 1.801913 GACCTGCACGAGCTGTACG 60.802 63.158 6.36 0.00 42.74 3.67
3898 3954 3.181967 CCTGCACGAGCTGTACGC 61.182 66.667 6.36 2.08 42.74 4.42
3899 3955 3.181967 CTGCACGAGCTGTACGCC 61.182 66.667 6.36 0.00 42.74 5.68
3900 3956 3.914605 CTGCACGAGCTGTACGCCA 62.915 63.158 6.36 0.00 42.74 5.69
3901 3957 2.509336 GCACGAGCTGTACGCCAT 60.509 61.111 0.00 0.00 40.39 4.40
3902 3958 2.802667 GCACGAGCTGTACGCCATG 61.803 63.158 0.00 0.00 40.39 3.66
3903 3959 1.446099 CACGAGCTGTACGCCATGT 60.446 57.895 0.00 1.23 40.39 3.21
3904 3960 1.153823 ACGAGCTGTACGCCATGTC 60.154 57.895 0.00 0.00 40.39 3.06
3905 3961 2.224217 CGAGCTGTACGCCATGTCG 61.224 63.158 0.00 0.00 40.39 4.35
3906 3962 1.138883 GAGCTGTACGCCATGTCGA 59.861 57.895 1.83 0.00 40.39 4.20
3907 3963 0.457853 GAGCTGTACGCCATGTCGAA 60.458 55.000 1.83 0.00 40.39 3.71
3908 3964 0.458543 AGCTGTACGCCATGTCGAAG 60.459 55.000 1.83 0.00 40.39 3.79
3909 3965 0.457853 GCTGTACGCCATGTCGAAGA 60.458 55.000 1.83 0.00 0.00 2.87
3910 3966 1.990799 CTGTACGCCATGTCGAAGAA 58.009 50.000 1.83 0.00 39.69 2.52
3911 3967 1.920574 CTGTACGCCATGTCGAAGAAG 59.079 52.381 1.83 0.00 39.69 2.85
3912 3968 1.271379 TGTACGCCATGTCGAAGAAGT 59.729 47.619 1.83 0.00 39.69 3.01
3913 3969 1.918609 GTACGCCATGTCGAAGAAGTC 59.081 52.381 1.83 0.00 39.69 3.01
3914 3970 0.317160 ACGCCATGTCGAAGAAGTCA 59.683 50.000 1.83 0.00 39.69 3.41
3915 3971 0.994995 CGCCATGTCGAAGAAGTCAG 59.005 55.000 0.00 0.00 39.69 3.51
3916 3972 1.402852 CGCCATGTCGAAGAAGTCAGA 60.403 52.381 0.00 0.00 39.69 3.27
3917 3973 2.266554 GCCATGTCGAAGAAGTCAGAG 58.733 52.381 0.00 0.00 39.69 3.35
3918 3974 2.886081 CCATGTCGAAGAAGTCAGAGG 58.114 52.381 0.00 0.00 39.69 3.69
3919 3975 2.417924 CCATGTCGAAGAAGTCAGAGGG 60.418 54.545 0.00 0.00 39.69 4.30
3920 3976 1.257743 TGTCGAAGAAGTCAGAGGGG 58.742 55.000 0.00 0.00 39.69 4.79
3921 3977 0.108567 GTCGAAGAAGTCAGAGGGGC 60.109 60.000 0.00 0.00 39.69 5.80
3922 3978 1.219393 CGAAGAAGTCAGAGGGGCC 59.781 63.158 0.00 0.00 0.00 5.80
3923 3979 1.544825 CGAAGAAGTCAGAGGGGCCA 61.545 60.000 4.39 0.00 0.00 5.36
3924 3980 0.251634 GAAGAAGTCAGAGGGGCCAG 59.748 60.000 4.39 0.00 0.00 4.85
3925 3981 1.846712 AAGAAGTCAGAGGGGCCAGC 61.847 60.000 4.39 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.087892 AATCTGCAGCGAGGCCGT 62.088 61.111 9.47 0.00 38.24 5.68
6 7 3.570638 CAATCTGCAGCGAGGCCG 61.571 66.667 9.47 0.00 39.16 6.13
7 8 3.885521 GCAATCTGCAGCGAGGCC 61.886 66.667 9.47 0.00 44.26 5.19
14 15 3.818787 GGCCACCGCAATCTGCAG 61.819 66.667 7.63 7.63 45.36 4.41
15 16 3.942377 ATGGCCACCGCAATCTGCA 62.942 57.895 8.16 0.00 45.36 4.41
16 17 3.129913 GATGGCCACCGCAATCTGC 62.130 63.158 8.16 0.00 41.62 4.26
17 18 2.827051 CGATGGCCACCGCAATCTG 61.827 63.158 6.55 0.00 42.55 2.90
60 61 4.267928 CGAAGTAAACCATCGGATCTGAAC 59.732 45.833 8.65 0.81 33.15 3.18
95 96 6.261381 TGTGTCAAGCCGTCTTTTATAGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
118 120 1.845627 CTGCACCACCATCCCTCTGT 61.846 60.000 0.00 0.00 0.00 3.41
155 158 1.560505 GGGATCCCAGCAACAAATGT 58.439 50.000 26.95 0.00 35.81 2.71
254 266 1.652947 ATAACCAACTCGGGTCAGGT 58.347 50.000 6.69 6.69 41.32 4.00
255 267 2.159000 GGTATAACCAACTCGGGTCAGG 60.159 54.545 5.38 5.38 41.32 3.86
345 363 6.018589 AGCAAGAATTTAGCTTTTCACCTC 57.981 37.500 0.00 0.00 34.37 3.85
359 377 2.699846 TCCAACCAGCAAAGCAAGAATT 59.300 40.909 0.00 0.00 0.00 2.17
372 390 2.428530 TCACTCTCATCGATCCAACCAG 59.571 50.000 0.00 0.00 0.00 4.00
388 408 1.896220 TCAATGCCCAAGTGTCACTC 58.104 50.000 5.82 0.00 0.00 3.51
537 561 9.610705 CATATAAGACCAAAGCTATGCATAGAT 57.389 33.333 33.10 26.44 32.05 1.98
593 624 8.585471 AATTCACACAATCAATATCAACTCCT 57.415 30.769 0.00 0.00 0.00 3.69
594 625 8.680903 AGAATTCACACAATCAATATCAACTCC 58.319 33.333 8.44 0.00 0.00 3.85
615 646 5.361285 ACTCGGTCTCTGCATAACTAGAATT 59.639 40.000 0.00 0.00 0.00 2.17
673 709 7.038154 TCCAACTTCTTTTGATAAAGTGTGG 57.962 36.000 0.00 0.00 41.25 4.17
675 711 7.881775 ACTCCAACTTCTTTTGATAAAGTGT 57.118 32.000 0.00 0.00 41.25 3.55
677 713 9.274206 GACTACTCCAACTTCTTTTGATAAAGT 57.726 33.333 0.00 0.00 41.25 2.66
698 734 4.204799 AGCGGGGAAAATTAATGGACTAC 58.795 43.478 0.00 0.00 0.00 2.73
700 736 3.288092 GAGCGGGGAAAATTAATGGACT 58.712 45.455 0.00 0.00 0.00 3.85
706 742 2.086094 GAACCGAGCGGGGAAAATTAA 58.914 47.619 14.07 0.00 41.60 1.40
710 746 2.032987 GGAACCGAGCGGGGAAAA 59.967 61.111 14.07 0.00 41.60 2.29
734 770 3.118149 ACCGAGCGGGGAGTATTATTTTT 60.118 43.478 14.07 0.00 41.60 1.94
735 771 2.436911 ACCGAGCGGGGAGTATTATTTT 59.563 45.455 14.07 0.00 41.60 1.82
736 772 2.044758 ACCGAGCGGGGAGTATTATTT 58.955 47.619 14.07 0.00 41.60 1.40
737 773 1.713297 ACCGAGCGGGGAGTATTATT 58.287 50.000 14.07 0.00 41.60 1.40
738 774 1.713297 AACCGAGCGGGGAGTATTAT 58.287 50.000 14.07 0.00 41.60 1.28
739 775 2.363306 TAACCGAGCGGGGAGTATTA 57.637 50.000 14.07 0.00 41.60 0.98
740 776 1.713297 ATAACCGAGCGGGGAGTATT 58.287 50.000 14.07 0.00 41.60 1.89
741 777 1.713297 AATAACCGAGCGGGGAGTAT 58.287 50.000 14.07 2.90 41.60 2.12
742 778 1.488390 AAATAACCGAGCGGGGAGTA 58.512 50.000 14.07 0.63 41.60 2.59
743 779 0.616891 AAAATAACCGAGCGGGGAGT 59.383 50.000 14.07 0.00 41.60 3.85
744 780 1.746470 AAAAATAACCGAGCGGGGAG 58.254 50.000 14.07 0.00 41.60 4.30
798 834 2.268920 GGGATGCCTCGCTTGTCA 59.731 61.111 0.00 0.00 0.00 3.58
822 858 2.740055 GTGTGGACTGGAGCAGCG 60.740 66.667 0.00 0.00 34.37 5.18
839 875 2.711711 CCAGATTGGCATCTTCGGG 58.288 57.895 0.00 0.00 37.71 5.14
858 894 0.601311 GGGCTTCCGATCGAGATTGG 60.601 60.000 18.66 12.19 42.60 3.16
892 928 2.793299 ATGGGGTGGGGAATTTATGG 57.207 50.000 0.00 0.00 0.00 2.74
893 929 6.239858 GGAATTTATGGGGTGGGGAATTTATG 60.240 42.308 0.00 0.00 0.00 1.90
894 930 5.849475 GGAATTTATGGGGTGGGGAATTTAT 59.151 40.000 0.00 0.00 0.00 1.40
895 931 5.220521 GGAATTTATGGGGTGGGGAATTTA 58.779 41.667 0.00 0.00 0.00 1.40
896 932 4.044308 GGAATTTATGGGGTGGGGAATTT 58.956 43.478 0.00 0.00 0.00 1.82
897 933 3.635004 GGGAATTTATGGGGTGGGGAATT 60.635 47.826 0.00 0.00 0.00 2.17
898 934 2.090210 GGGAATTTATGGGGTGGGGAAT 60.090 50.000 0.00 0.00 0.00 3.01
899 935 1.292546 GGGAATTTATGGGGTGGGGAA 59.707 52.381 0.00 0.00 0.00 3.97
900 936 0.938192 GGGAATTTATGGGGTGGGGA 59.062 55.000 0.00 0.00 0.00 4.81
901 937 0.639392 TGGGAATTTATGGGGTGGGG 59.361 55.000 0.00 0.00 0.00 4.96
902 938 1.691163 GGTGGGAATTTATGGGGTGGG 60.691 57.143 0.00 0.00 0.00 4.61
903 939 1.691163 GGGTGGGAATTTATGGGGTGG 60.691 57.143 0.00 0.00 0.00 4.61
904 940 1.691163 GGGGTGGGAATTTATGGGGTG 60.691 57.143 0.00 0.00 0.00 4.61
905 941 0.639943 GGGGTGGGAATTTATGGGGT 59.360 55.000 0.00 0.00 0.00 4.95
906 942 0.639392 TGGGGTGGGAATTTATGGGG 59.361 55.000 0.00 0.00 0.00 4.96
907 943 2.793299 ATGGGGTGGGAATTTATGGG 57.207 50.000 0.00 0.00 0.00 4.00
908 944 6.762077 AATTTATGGGGTGGGAATTTATGG 57.238 37.500 0.00 0.00 0.00 2.74
909 945 8.491045 ACTAATTTATGGGGTGGGAATTTATG 57.509 34.615 0.00 0.00 0.00 1.90
910 946 7.450323 CGACTAATTTATGGGGTGGGAATTTAT 59.550 37.037 0.00 0.00 0.00 1.40
911 947 6.773685 CGACTAATTTATGGGGTGGGAATTTA 59.226 38.462 0.00 0.00 0.00 1.40
912 948 5.596772 CGACTAATTTATGGGGTGGGAATTT 59.403 40.000 0.00 0.00 0.00 1.82
913 949 5.137551 CGACTAATTTATGGGGTGGGAATT 58.862 41.667 0.00 0.00 0.00 2.17
914 950 4.167307 ACGACTAATTTATGGGGTGGGAAT 59.833 41.667 0.00 0.00 0.00 3.01
915 951 3.524380 ACGACTAATTTATGGGGTGGGAA 59.476 43.478 0.00 0.00 0.00 3.97
916 952 3.116959 ACGACTAATTTATGGGGTGGGA 58.883 45.455 0.00 0.00 0.00 4.37
917 953 3.118186 TCACGACTAATTTATGGGGTGGG 60.118 47.826 0.00 0.00 0.00 4.61
918 954 4.145365 TCACGACTAATTTATGGGGTGG 57.855 45.455 0.00 0.00 0.00 4.61
919 955 5.364778 TGATCACGACTAATTTATGGGGTG 58.635 41.667 0.00 0.00 0.00 4.61
920 956 5.611374 CTGATCACGACTAATTTATGGGGT 58.389 41.667 0.00 0.00 0.00 4.95
921 957 4.452455 GCTGATCACGACTAATTTATGGGG 59.548 45.833 0.00 0.00 0.00 4.96
922 958 4.452455 GGCTGATCACGACTAATTTATGGG 59.548 45.833 0.00 0.00 0.00 4.00
937 973 0.608856 AATGGTTGTGCGGCTGATCA 60.609 50.000 0.00 0.00 0.00 2.92
1104 1140 1.502990 CGTTGGTTGATGTGGTCGCA 61.503 55.000 0.00 0.00 0.00 5.10
1108 1144 0.398696 TAGGCGTTGGTTGATGTGGT 59.601 50.000 0.00 0.00 0.00 4.16
1112 1148 1.086696 CCAGTAGGCGTTGGTTGATG 58.913 55.000 0.00 0.00 0.00 3.07
1128 1164 0.401738 TTCCACTTGGCTTCCTCCAG 59.598 55.000 0.00 0.00 37.44 3.86
1196 1235 1.004560 TGCGACAAGGAGAAGCAGG 60.005 57.895 0.00 0.00 33.57 4.85
1200 1239 0.390472 GGGACTGCGACAAGGAGAAG 60.390 60.000 0.00 0.00 41.23 2.85
1212 1251 1.682323 GTAGTGGTAGCTAGGGACTGC 59.318 57.143 0.00 0.00 41.52 4.40
1239 1278 2.588877 GCGTCCATGGCTGCGTAT 60.589 61.111 6.96 0.00 0.00 3.06
1295 1334 3.458163 CGTAGAGGAAGGCGGCCA 61.458 66.667 23.09 0.00 0.00 5.36
1299 1338 2.278013 GCGACGTAGAGGAAGGCG 60.278 66.667 0.00 0.00 0.00 5.52
1302 1341 1.139095 GGTGGCGACGTAGAGGAAG 59.861 63.158 0.00 0.00 0.00 3.46
1553 1592 4.570663 CGTCCGGGATGTCTCGGC 62.571 72.222 16.33 10.43 45.31 5.54
1782 1821 0.036732 TGGTGGTGAGGAACATCTGC 59.963 55.000 0.00 0.00 0.00 4.26
1830 1869 0.742505 TCTCGGTACCTATGTTGCCG 59.257 55.000 10.90 7.26 40.72 5.69
1842 1881 3.200593 GTCCGCTCGCTCTCGGTA 61.201 66.667 7.16 0.00 45.44 4.02
2202 2241 3.308323 CGAGAGTAGGTGTACGGAACTAC 59.692 52.174 1.08 1.08 36.84 2.73
2273 2313 4.435137 TCCCCCAACTACCATATCCTATG 58.565 47.826 0.00 0.00 0.00 2.23
2286 2326 0.471211 TCGTCTCTGTTCCCCCAACT 60.471 55.000 0.00 0.00 35.79 3.16
2295 2335 0.659427 TGTTCGACGTCGTCTCTGTT 59.341 50.000 34.40 0.00 40.80 3.16
2513 2553 2.250485 CGACGGTCGTGTCTTCGT 59.750 61.111 21.68 0.00 36.71 3.85
2556 2596 3.684315 GCGTTGACGAACACGCGA 61.684 61.111 15.93 0.00 43.02 5.87
2580 2620 1.121407 CAGCGGGGTCCCTCATGATA 61.121 60.000 8.15 0.00 0.00 2.15
2610 2650 2.513897 GGGATGAACTTCGCCGGG 60.514 66.667 2.18 0.00 0.00 5.73
2972 3012 2.961062 AGGGGAAATGTATTGCATGCTC 59.039 45.455 20.33 4.95 37.96 4.26
3042 3082 5.355630 TGCTACTACTACAGAAGAAGCAGAG 59.644 44.000 0.00 0.00 0.00 3.35
3188 3233 4.052159 CGAGAGGCTCAATACAACATCT 57.948 45.455 18.26 0.00 0.00 2.90
3211 3256 8.752187 TCAAACCTTGTACTCTATATAAACCGT 58.248 33.333 0.00 0.00 0.00 4.83
3248 3294 4.647399 GTGTGCCTTATCTCTAAGAGAGGT 59.353 45.833 8.78 4.51 42.26 3.85
3255 3301 5.791336 ATCATCGTGTGCCTTATCTCTAA 57.209 39.130 0.00 0.00 0.00 2.10
3269 3315 8.916654 GGTAGACTATGATTTGTAATCATCGTG 58.083 37.037 18.47 12.68 39.30 4.35
3271 3317 9.645059 ATGGTAGACTATGATTTGTAATCATCG 57.355 33.333 15.91 13.03 39.30 3.84
3311 3358 5.278061 GGGGGATGTTAGAGTATATAGGCA 58.722 45.833 0.00 0.00 0.00 4.75
3352 3400 0.607489 ATGCTCCTTTTGTCTGCGCT 60.607 50.000 9.73 0.00 0.00 5.92
3363 3411 4.514577 CCGTCCGCGATGCTCCTT 62.515 66.667 8.23 0.00 41.33 3.36
3370 3418 4.175489 CGTCTGACCGTCCGCGAT 62.175 66.667 8.23 0.00 41.33 4.58
3387 3440 0.032815 GTCGGCTGCTATTCTCTCCC 59.967 60.000 0.00 0.00 0.00 4.30
3495 3549 2.687297 AGGGCTATCATCTGCTTGAGA 58.313 47.619 0.00 0.00 34.25 3.27
3531 3585 1.268352 CATCCTACGCTCTCAGCTACC 59.732 57.143 0.00 0.00 39.60 3.18
3589 3643 2.782222 CCGACCCGACATCGACCAT 61.782 63.158 2.09 0.00 42.25 3.55
3612 3666 1.593296 GCGACTTCCTAGACACCGGT 61.593 60.000 0.00 0.00 0.00 5.28
3680 3735 0.389948 GTGCACCCCTACTTCGACAG 60.390 60.000 5.22 0.00 0.00 3.51
3704 3759 2.611518 CCTCGTCAACACCATCTTCTC 58.388 52.381 0.00 0.00 0.00 2.87
3741 3797 3.256960 ATGTGTCCCCGGGCTTGT 61.257 61.111 17.73 0.00 0.00 3.16
3780 3836 0.183492 ATGCCCCGTGCTGACAATAT 59.817 50.000 0.00 0.00 42.00 1.28
3782 3838 2.048023 CATGCCCCGTGCTGACAAT 61.048 57.895 0.00 0.00 42.00 2.71
3786 3842 2.946172 CTATGCATGCCCCGTGCTGA 62.946 60.000 16.68 0.00 45.53 4.26
3793 3849 1.598130 GTCCGTCTATGCATGCCCC 60.598 63.158 16.68 0.00 0.00 5.80
3821 3877 1.154225 GGTGCGGCATTTCGTCAAG 60.154 57.895 5.72 0.00 0.00 3.02
3855 3911 1.685765 TCTACGGATGCCTGGTGCT 60.686 57.895 0.00 0.00 42.00 4.40
3856 3912 1.521681 GTCTACGGATGCCTGGTGC 60.522 63.158 0.00 0.00 41.77 5.01
3857 3913 0.249120 TTGTCTACGGATGCCTGGTG 59.751 55.000 0.00 0.00 0.00 4.17
3858 3914 0.537188 CTTGTCTACGGATGCCTGGT 59.463 55.000 0.00 0.00 0.00 4.00
3859 3915 0.179073 CCTTGTCTACGGATGCCTGG 60.179 60.000 0.00 0.00 0.00 4.45
3860 3916 0.179073 CCCTTGTCTACGGATGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
3861 3917 0.325296 TCCCTTGTCTACGGATGCCT 60.325 55.000 0.00 0.00 0.00 4.75
3862 3918 0.179081 GTCCCTTGTCTACGGATGCC 60.179 60.000 0.00 0.00 0.00 4.40
3863 3919 0.179081 GGTCCCTTGTCTACGGATGC 60.179 60.000 0.00 0.00 0.00 3.91
3864 3920 1.137086 CAGGTCCCTTGTCTACGGATG 59.863 57.143 0.00 0.00 0.00 3.51
3865 3921 1.486211 CAGGTCCCTTGTCTACGGAT 58.514 55.000 0.00 0.00 0.00 4.18
3866 3922 1.255667 GCAGGTCCCTTGTCTACGGA 61.256 60.000 0.00 0.00 0.00 4.69
3867 3923 1.218316 GCAGGTCCCTTGTCTACGG 59.782 63.158 0.00 0.00 0.00 4.02
3868 3924 0.389948 GTGCAGGTCCCTTGTCTACG 60.390 60.000 0.00 0.00 0.00 3.51
3869 3925 0.389948 CGTGCAGGTCCCTTGTCTAC 60.390 60.000 0.00 0.00 0.00 2.59
3870 3926 0.541063 TCGTGCAGGTCCCTTGTCTA 60.541 55.000 6.26 0.00 0.00 2.59
3871 3927 1.821061 CTCGTGCAGGTCCCTTGTCT 61.821 60.000 6.26 0.00 0.00 3.41
3872 3928 1.374758 CTCGTGCAGGTCCCTTGTC 60.375 63.158 6.26 0.00 0.00 3.18
3873 3929 2.743718 CTCGTGCAGGTCCCTTGT 59.256 61.111 6.26 0.00 0.00 3.16
3874 3930 2.743928 GCTCGTGCAGGTCCCTTG 60.744 66.667 6.26 0.00 39.41 3.61
3875 3931 2.925170 AGCTCGTGCAGGTCCCTT 60.925 61.111 12.58 0.00 42.74 3.95
3876 3932 3.699894 CAGCTCGTGCAGGTCCCT 61.700 66.667 12.58 0.00 42.74 4.20
3877 3933 2.646175 TACAGCTCGTGCAGGTCCC 61.646 63.158 12.58 0.00 42.74 4.46
3878 3934 1.446272 GTACAGCTCGTGCAGGTCC 60.446 63.158 12.58 0.00 42.74 4.46
3879 3935 1.801913 CGTACAGCTCGTGCAGGTC 60.802 63.158 12.58 0.06 42.74 3.85
3880 3936 2.258591 CGTACAGCTCGTGCAGGT 59.741 61.111 12.58 11.54 42.74 4.00
3881 3937 3.181967 GCGTACAGCTCGTGCAGG 61.182 66.667 12.58 0.00 44.04 4.85
3891 3947 1.920574 CTTCTTCGACATGGCGTACAG 59.079 52.381 22.59 15.32 0.00 2.74
3892 3948 1.271379 ACTTCTTCGACATGGCGTACA 59.729 47.619 22.59 5.43 0.00 2.90
3893 3949 1.918609 GACTTCTTCGACATGGCGTAC 59.081 52.381 22.59 0.00 0.00 3.67
3894 3950 1.542472 TGACTTCTTCGACATGGCGTA 59.458 47.619 22.59 11.10 0.00 4.42
3895 3951 0.317160 TGACTTCTTCGACATGGCGT 59.683 50.000 22.59 0.00 0.00 5.68
3896 3952 0.994995 CTGACTTCTTCGACATGGCG 59.005 55.000 16.88 16.88 0.00 5.69
3897 3953 2.266554 CTCTGACTTCTTCGACATGGC 58.733 52.381 0.00 0.00 0.00 4.40
3898 3954 2.417924 CCCTCTGACTTCTTCGACATGG 60.418 54.545 0.00 0.00 0.00 3.66
3899 3955 2.417924 CCCCTCTGACTTCTTCGACATG 60.418 54.545 0.00 0.00 0.00 3.21
3900 3956 1.827969 CCCCTCTGACTTCTTCGACAT 59.172 52.381 0.00 0.00 0.00 3.06
3901 3957 1.257743 CCCCTCTGACTTCTTCGACA 58.742 55.000 0.00 0.00 0.00 4.35
3902 3958 0.108567 GCCCCTCTGACTTCTTCGAC 60.109 60.000 0.00 0.00 0.00 4.20
3903 3959 1.258445 GGCCCCTCTGACTTCTTCGA 61.258 60.000 0.00 0.00 0.00 3.71
3904 3960 1.219393 GGCCCCTCTGACTTCTTCG 59.781 63.158 0.00 0.00 0.00 3.79
3905 3961 0.251634 CTGGCCCCTCTGACTTCTTC 59.748 60.000 0.00 0.00 0.00 2.87
3906 3962 1.846712 GCTGGCCCCTCTGACTTCTT 61.847 60.000 0.00 0.00 0.00 2.52
3907 3963 2.297129 GCTGGCCCCTCTGACTTCT 61.297 63.158 0.00 0.00 0.00 2.85
3908 3964 2.270527 GCTGGCCCCTCTGACTTC 59.729 66.667 0.00 0.00 0.00 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.