Multiple sequence alignment - TraesCS7D01G271000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G271000 chr7D 100.000 6317 0 0 1 6317 258220974 258227290 0.000000e+00 11666.0
1 TraesCS7D01G271000 chr7D 100.000 483 0 0 6590 7072 258227563 258228045 0.000000e+00 893.0
2 TraesCS7D01G271000 chr7D 89.922 258 22 4 1 256 258211479 258211734 5.290000e-86 329.0
3 TraesCS7D01G271000 chr7D 93.827 81 5 0 1793 1873 506006952 506007032 9.630000e-24 122.0
4 TraesCS7D01G271000 chr7A 95.229 3291 111 16 3 3256 279178275 279181556 0.000000e+00 5166.0
5 TraesCS7D01G271000 chr7A 97.214 1615 44 1 4703 6317 279183002 279184615 0.000000e+00 2732.0
6 TraesCS7D01G271000 chr7A 93.665 805 28 3 3828 4610 279182202 279183005 0.000000e+00 1182.0
7 TraesCS7D01G271000 chr7A 94.007 584 31 1 3249 3828 279181592 279182175 0.000000e+00 881.0
8 TraesCS7D01G271000 chr7A 91.368 475 23 6 6607 7069 279184727 279185195 1.000000e-177 634.0
9 TraesCS7D01G271000 chr7A 84.477 612 51 21 95 676 279177659 279178256 1.330000e-156 564.0
10 TraesCS7D01G271000 chr7A 81.234 389 50 18 258 632 279176715 279177094 6.940000e-75 292.0
11 TraesCS7D01G271000 chr7A 94.393 107 4 2 4606 4712 61815919 61816023 5.680000e-36 163.0
12 TraesCS7D01G271000 chr7A 91.176 102 9 0 1792 1893 612377536 612377435 9.570000e-29 139.0
13 TraesCS7D01G271000 chr7A 81.765 170 21 7 57 217 279165117 279165285 4.450000e-27 134.0
14 TraesCS7D01G271000 chr7A 95.062 81 4 0 1793 1873 573432705 573432785 2.070000e-25 128.0
15 TraesCS7D01G271000 chr7B 95.980 2836 60 10 3504 6317 237488211 237491014 0.000000e+00 4556.0
16 TraesCS7D01G271000 chr7B 95.974 1838 43 15 5 1815 237484711 237486544 0.000000e+00 2955.0
17 TraesCS7D01G271000 chr7B 96.758 1419 39 5 1843 3256 237486542 237487958 0.000000e+00 2359.0
18 TraesCS7D01G271000 chr7B 84.524 672 61 20 35 676 237484030 237484688 6.020000e-175 625.0
19 TraesCS7D01G271000 chr7B 94.774 287 11 3 6590 6874 237491114 237491398 1.810000e-120 444.0
20 TraesCS7D01G271000 chr7B 97.768 224 5 0 3249 3472 237487994 237488217 3.090000e-103 387.0
21 TraesCS7D01G271000 chr7B 95.980 199 3 1 6871 7069 237494393 237494586 1.140000e-82 318.0
22 TraesCS7D01G271000 chr7B 89.167 120 11 2 4606 4724 34326977 34327095 1.590000e-31 148.0
23 TraesCS7D01G271000 chr7B 93.617 47 3 0 3922 3968 237488563 237488609 3.540000e-08 71.3
24 TraesCS7D01G271000 chr5D 81.592 1005 175 7 5070 6072 414247507 414248503 0.000000e+00 822.0
25 TraesCS7D01G271000 chr5D 92.727 110 7 1 4606 4715 558970432 558970540 2.640000e-34 158.0
26 TraesCS7D01G271000 chr5D 78.195 133 19 10 1001 1128 414244118 414244245 7.610000e-10 76.8
27 TraesCS7D01G271000 chr5B 81.113 1006 180 7 5070 6073 499384271 499385268 0.000000e+00 797.0
28 TraesCS7D01G271000 chr5B 93.458 107 6 1 4607 4713 689895712 689895817 2.640000e-34 158.0
29 TraesCS7D01G271000 chr5B 77.612 134 18 12 1001 1128 499380895 499381022 3.540000e-08 71.3
30 TraesCS7D01G271000 chr5A 81.095 1005 180 7 5070 6072 526659730 526660726 0.000000e+00 795.0
31 TraesCS7D01G271000 chr5A 77.612 134 18 12 1001 1128 526656176 526656303 3.540000e-08 71.3
32 TraesCS7D01G271000 chr6D 95.098 102 3 2 4606 4706 200398710 200398810 7.340000e-35 159.0
33 TraesCS7D01G271000 chr6D 95.238 84 4 0 1790 1873 422072017 422072100 4.450000e-27 134.0
34 TraesCS7D01G271000 chr4D 94.286 105 3 3 4609 4712 509117803 509117701 2.640000e-34 158.0
35 TraesCS7D01G271000 chr4D 93.396 106 5 2 4601 4706 12354801 12354698 9.500000e-34 156.0
36 TraesCS7D01G271000 chr6B 93.333 105 6 1 4609 4713 518389432 518389535 3.420000e-33 154.0
37 TraesCS7D01G271000 chr1D 96.296 81 3 0 1793 1873 338872383 338872463 4.450000e-27 134.0
38 TraesCS7D01G271000 chr1D 86.408 103 10 1 1791 1893 324624126 324624224 7.500000e-20 110.0
39 TraesCS7D01G271000 chr2B 90.625 96 5 3 1780 1873 164904145 164904238 2.680000e-24 124.0
40 TraesCS7D01G271000 chr6A 93.827 81 5 0 1793 1873 135229392 135229312 9.630000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G271000 chr7D 258220974 258228045 7071 False 6279.500000 11666 100.000000 1 7072 2 chr7D.!!$F3 7071
1 TraesCS7D01G271000 chr7A 279176715 279185195 8480 False 1635.857143 5166 91.027714 3 7069 7 chr7A.!!$F4 7066
2 TraesCS7D01G271000 chr7B 237484030 237494586 10556 False 1464.412500 4556 94.421875 5 7069 8 chr7B.!!$F2 7064
3 TraesCS7D01G271000 chr5D 414244118 414248503 4385 False 449.400000 822 79.893500 1001 6072 2 chr5D.!!$F2 5071
4 TraesCS7D01G271000 chr5B 499380895 499385268 4373 False 434.150000 797 79.362500 1001 6073 2 chr5B.!!$F2 5072
5 TraesCS7D01G271000 chr5A 526656176 526660726 4550 False 433.150000 795 79.353500 1001 6072 2 chr5A.!!$F1 5071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 2283 0.737715 GATCACACTGACTCGTGGGC 60.738 60.000 0.00 0.00 38.20 5.36 F
1511 3263 5.399301 CCAAGTTGTTTTACGCTTTGATCTG 59.601 40.000 1.45 0.00 0.00 2.90 F
3016 5798 0.168128 GACAACCTTGCATGCGGTAC 59.832 55.000 16.45 8.61 32.07 3.34 F
3855 6711 1.381928 GGATCACCAGCATGCACAGG 61.382 60.000 21.98 20.04 35.97 4.00 F
4344 7218 4.080807 TGAACCTGTGAACAAAGTACCTCA 60.081 41.667 0.00 0.00 0.00 3.86 F
5903 9591 1.662876 CCAACCGACGATTTGTTGCTG 60.663 52.381 8.61 0.00 38.38 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 3732 0.606401 AAGGTGCCCAGTTCACGATG 60.606 55.000 0.00 0.0 35.39 3.84 R
3078 5860 1.227943 TTCGCAGCACTTCAAGGCT 60.228 52.632 0.00 0.0 42.06 4.58 R
3982 6838 0.176680 AGCTCGCACCATAGTTCCAG 59.823 55.000 0.00 0.0 0.00 3.86 R
4685 8296 2.658807 ACTCCCTCTTGTCCCAAAAC 57.341 50.000 0.00 0.0 0.00 2.43 R
5931 9619 0.187117 TCGATGATCAGCCTCCTCCT 59.813 55.000 5.18 0.0 0.00 3.69 R
6963 13667 0.674534 ACCGTTTCTCTCGTTGCTCT 59.325 50.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 1605 4.269603 GTGCTAGACTCGATTCGTAGTACA 59.730 45.833 16.82 7.70 0.00 2.90
43 1608 6.037940 TGCTAGACTCGATTCGTAGTACAAAT 59.962 38.462 5.89 0.00 0.00 2.32
179 1748 3.319405 AGGAATGACATAGACTGGCTACG 59.681 47.826 0.00 0.00 32.21 3.51
391 1989 9.504708 TTCAACAAAATTGGCTGATTATGAATT 57.495 25.926 0.00 0.00 0.00 2.17
590 2191 7.427606 CCGTACTATTCATTATCGACCGTATTC 59.572 40.741 0.00 0.00 0.00 1.75
682 2283 0.737715 GATCACACTGACTCGTGGGC 60.738 60.000 0.00 0.00 38.20 5.36
1511 3263 5.399301 CCAAGTTGTTTTACGCTTTGATCTG 59.601 40.000 1.45 0.00 0.00 2.90
1742 3732 5.229423 TGTTCATTGCAATTGTTTCCTAGC 58.771 37.500 9.83 0.00 0.00 3.42
1888 4488 0.399949 ATGGCTTATGGGACGGAGGA 60.400 55.000 0.00 0.00 0.00 3.71
1975 4575 1.250154 TTGCATTACCTGTGGCAGCC 61.250 55.000 3.66 3.66 37.59 4.85
1995 4596 3.736740 GCCGTGTCCAAAAACAGTTTCAT 60.737 43.478 0.00 0.00 0.00 2.57
2154 4756 8.993121 CCTAACATGTGACTGATAATATTGGTC 58.007 37.037 0.00 2.62 0.00 4.02
2266 4966 6.206829 GGTGGCACCAGTTTATAGAATTATCC 59.793 42.308 31.26 0.00 38.42 2.59
2506 5282 7.009907 CCGACATACATATGTGATCATTAGCTG 59.990 40.741 18.81 0.00 46.20 4.24
2518 5294 5.519927 TGATCATTAGCTGTACACATGTTCG 59.480 40.000 0.00 0.00 0.00 3.95
2658 5436 5.046520 ACTTGGAGTGTAAGTTACCTGATCC 60.047 44.000 10.51 11.74 34.91 3.36
2863 5641 3.008375 TGTCTGCCTCTCTATTTGTTGCT 59.992 43.478 0.00 0.00 0.00 3.91
2898 5680 5.630121 TGTTGTGACCCTCAAAGAATGTAT 58.370 37.500 0.00 0.00 0.00 2.29
3016 5798 0.168128 GACAACCTTGCATGCGGTAC 59.832 55.000 16.45 8.61 32.07 3.34
3077 5859 6.163135 ACTAGTATGCCTGAACTGTAATCC 57.837 41.667 0.00 0.00 0.00 3.01
3078 5860 5.661312 ACTAGTATGCCTGAACTGTAATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3135 5917 6.148480 GGCTGTATCATAGTTTAGGCATGAAG 59.852 42.308 0.00 0.00 32.73 3.02
3265 6090 7.559486 AGTATGAACTTGTTGATCTATGCTCA 58.441 34.615 0.00 0.00 29.00 4.26
3397 6222 8.406172 GTTGAAAACTGCAAAGTCTATTTGAA 57.594 30.769 4.59 0.00 45.32 2.69
3490 6315 4.492646 TCATAGGATTGCAGACCATAGGA 58.507 43.478 12.54 7.22 0.00 2.94
3646 6475 1.547372 GCATGACATTCCAAACCTGCT 59.453 47.619 0.00 0.00 0.00 4.24
3669 6498 3.426787 TTTCCTATTCCTGCGTTTGGA 57.573 42.857 0.00 0.00 0.00 3.53
3772 6601 2.890311 CAAGAAAAGGCATACACCACCA 59.110 45.455 0.00 0.00 0.00 4.17
3785 6614 6.974622 GCATACACCACCAAAATTGAATAGAG 59.025 38.462 0.00 0.00 0.00 2.43
3809 6638 8.237811 AGGAATTATAACCCATGTTTAGCAAG 57.762 34.615 8.07 0.00 35.87 4.01
3816 6645 4.415596 ACCCATGTTTAGCAAGATCCAAA 58.584 39.130 0.00 0.00 0.00 3.28
3855 6711 1.381928 GGATCACCAGCATGCACAGG 61.382 60.000 21.98 20.04 35.97 4.00
3879 6735 5.367945 AACAGTTTTAAGACCCAGACAGA 57.632 39.130 0.00 0.00 0.00 3.41
4035 6891 4.154918 GGCCAGATAGCATACTGTATTTGC 59.845 45.833 0.00 5.48 36.63 3.68
4135 7009 4.985413 AGGATTGACACATATTTTGCACG 58.015 39.130 0.00 0.00 0.00 5.34
4344 7218 4.080807 TGAACCTGTGAACAAAGTACCTCA 60.081 41.667 0.00 0.00 0.00 3.86
4350 7224 8.380099 ACCTGTGAACAAAGTACCTCAATATTA 58.620 33.333 0.00 0.00 0.00 0.98
4498 8033 6.486657 TCATCAGGACAAAGAAAAGGTAACAG 59.513 38.462 0.00 0.00 41.41 3.16
4685 8296 6.281405 AGTTGTACTAAGGTTGAGACACTTG 58.719 40.000 0.00 0.00 0.00 3.16
4807 8418 7.978982 AGTGTGAATACTGACTTTAATGATGC 58.021 34.615 0.00 0.00 0.00 3.91
5205 8893 5.912396 GTCTGTGCTGATATAGAAGAGAACG 59.088 44.000 0.00 0.00 36.18 3.95
5903 9591 1.662876 CCAACCGACGATTTGTTGCTG 60.663 52.381 8.61 0.00 38.38 4.41
5931 9619 3.449227 CGGCCTGCGTCCTACAGA 61.449 66.667 0.00 0.00 37.32 3.41
5932 9620 2.496817 GGCCTGCGTCCTACAGAG 59.503 66.667 0.00 0.00 37.32 3.35
5933 9621 2.496817 GCCTGCGTCCTACAGAGG 59.503 66.667 0.00 0.00 45.35 3.69
6026 9720 2.659610 GACGTCTGGAGGCTGCTT 59.340 61.111 8.70 0.00 0.00 3.91
6093 9787 3.245518 TCAATCGCTCTTTTCGGATCA 57.754 42.857 0.00 0.00 0.00 2.92
6226 9920 7.761038 AAGTTTAAGTGGATAAAGTTCCCTG 57.239 36.000 0.00 0.00 34.77 4.45
6310 10004 4.080582 TGGATGTCCATAGTTACCAGGTTG 60.081 45.833 0.00 0.00 42.01 3.77
6660 10354 5.116882 ACTTCCTCTGTTGTGTTTACTGAC 58.883 41.667 0.00 0.00 0.00 3.51
6755 10449 8.038944 ACTCAGAATGGTACGTACATATGTTTT 58.961 33.333 26.02 8.87 36.16 2.43
6823 10529 6.541278 CAGCTGTTGGAATTCAGATTCAGATA 59.459 38.462 5.25 0.00 42.82 1.98
6841 10547 3.831333 AGATATGCACATCCGAGACTGAT 59.169 43.478 0.16 0.00 0.00 2.90
6877 13581 2.206576 AGTGGAGCAATTTCCTGGTC 57.793 50.000 0.00 0.00 41.99 4.02
6959 13663 2.506438 GGACGTCTTCTTCCGCGG 60.506 66.667 22.12 22.12 0.00 6.46
6960 13664 2.564975 GACGTCTTCTTCCGCGGA 59.435 61.111 27.28 27.28 0.00 5.54
6961 13665 1.514443 GACGTCTTCTTCCGCGGAG 60.514 63.158 29.20 21.49 0.00 4.63
6962 13666 2.202623 CGTCTTCTTCCGCGGAGG 60.203 66.667 29.86 29.86 42.97 4.30
7069 13773 0.396974 AGCAAAAGGAGGCAACCACA 60.397 50.000 3.78 0.00 37.17 4.17
7070 13774 0.681175 GCAAAAGGAGGCAACCACAT 59.319 50.000 3.78 0.00 37.17 3.21
7071 13775 1.337167 GCAAAAGGAGGCAACCACATC 60.337 52.381 3.78 0.00 37.17 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.466860 CGAGTCTAGCACAAAAGTTTAGGTTTT 60.467 37.037 0.00 0.00 0.00 2.43
4 5 5.465724 CGAGTCTAGCACAAAAGTTTAGGTT 59.534 40.000 0.00 0.00 0.00 3.50
6 7 5.227908 TCGAGTCTAGCACAAAAGTTTAGG 58.772 41.667 0.00 0.00 0.00 2.69
7 8 6.952935 ATCGAGTCTAGCACAAAAGTTTAG 57.047 37.500 0.00 0.00 0.00 1.85
8 9 6.089016 CGAATCGAGTCTAGCACAAAAGTTTA 59.911 38.462 11.52 0.00 0.00 2.01
310 1908 8.576442 TGAAGTTCTTCCATTTCAAGGATTTAC 58.424 33.333 4.17 0.00 34.56 2.01
358 1956 5.360714 TCAGCCAATTTTGTTGAAGTTCTCT 59.639 36.000 4.17 0.00 0.00 3.10
359 1957 5.591099 TCAGCCAATTTTGTTGAAGTTCTC 58.409 37.500 4.17 0.00 0.00 2.87
590 2191 3.454375 ACTATTCTTGGTCGTAATGCGG 58.546 45.455 0.00 0.00 41.72 5.69
610 2211 5.744666 TTGTTCTTTGGCAGTACTGTAAC 57.255 39.130 23.44 16.61 0.00 2.50
682 2283 3.074242 AGGTAGTAGTAGGATTCTCCGGG 59.926 52.174 0.00 0.00 42.75 5.73
976 2579 3.386237 GGCGCTCTCCTGTCCTGT 61.386 66.667 7.64 0.00 0.00 4.00
1511 3263 6.127140 TGTGAACTCCTAACTAAGCCTTATCC 60.127 42.308 0.00 0.00 0.00 2.59
1742 3732 0.606401 AAGGTGCCCAGTTCACGATG 60.606 55.000 0.00 0.00 35.39 3.84
1888 4488 7.606456 CACCCACATACAACTTGTAATCTACTT 59.394 37.037 5.73 0.00 36.31 2.24
1975 4575 4.973663 GGTATGAAACTGTTTTTGGACACG 59.026 41.667 7.28 0.00 0.00 4.49
1995 4596 6.715718 TGAATTAAGGATTTCACGGTTTGGTA 59.284 34.615 0.00 0.00 0.00 3.25
2154 4756 6.214399 ACAACTTTCCTTCTACTGTTCTACG 58.786 40.000 0.00 0.00 0.00 3.51
2506 5282 6.822073 TTACATCATAGCGAACATGTGTAC 57.178 37.500 0.00 0.00 31.83 2.90
2518 5294 6.798315 AGATGCAGAACATTACATCATAGC 57.202 37.500 0.00 0.00 41.08 2.97
2683 5461 9.162764 ACCATGTTAACAAGATGACTGTTATAC 57.837 33.333 13.23 0.00 34.30 1.47
2863 5641 6.491745 TGAGGGTCACAACATTATTTTGCTAA 59.508 34.615 0.00 0.00 0.00 3.09
2898 5680 6.548321 AGGTAATATTTCAACAGGTTCACCA 58.452 36.000 0.00 0.00 38.89 4.17
3016 5798 4.508461 TTGCCATCAACTGAGATGTTTG 57.492 40.909 11.66 0.00 43.00 2.93
3078 5860 1.227943 TTCGCAGCACTTCAAGGCT 60.228 52.632 0.00 0.00 42.06 4.58
3135 5917 4.669197 GCATTAGTGACACAATGTTCGGAC 60.669 45.833 21.35 0.00 35.12 4.79
3265 6090 7.873719 AGAGCATAGTATTACTCGCTATCAT 57.126 36.000 16.51 5.38 37.26 2.45
3397 6222 6.879367 ACATTCCTTTGGAAATCCATTGAT 57.121 33.333 2.38 0.00 45.41 2.57
3497 6322 9.268282 AGAACCTAGTACAAATGAATCCTAAGA 57.732 33.333 0.00 0.00 0.00 2.10
3660 6489 1.035923 TTGCAGGATTTCCAAACGCA 58.964 45.000 0.00 0.00 38.89 5.24
3667 6496 3.131755 CCTCTTGGATTTGCAGGATTTCC 59.868 47.826 0.00 0.00 34.57 3.13
3669 6498 2.498885 GCCTCTTGGATTTGCAGGATTT 59.501 45.455 0.00 0.00 34.57 2.17
3785 6614 8.232913 TCTTGCTAAACATGGGTTATAATTCC 57.767 34.615 0.00 0.00 35.82 3.01
3809 6638 7.468141 AAAGAGTTTGGTAGGAATTTGGATC 57.532 36.000 0.00 0.00 0.00 3.36
3816 6645 7.829706 GTGATCCTTAAAGAGTTTGGTAGGAAT 59.170 37.037 0.00 0.00 33.12 3.01
3855 6711 5.820947 TCTGTCTGGGTCTTAAAACTGTTTC 59.179 40.000 6.20 0.00 0.00 2.78
3879 6735 3.000727 GTTGCCATAACAGCTTACTCGT 58.999 45.455 0.00 0.00 0.00 4.18
3982 6838 0.176680 AGCTCGCACCATAGTTCCAG 59.823 55.000 0.00 0.00 0.00 3.86
4035 6891 2.156917 TGAGCTGAACTTGATTGCTGG 58.843 47.619 0.00 0.00 33.83 4.85
4282 7156 6.252995 ACACCATATAAAACAGAACCACCAT 58.747 36.000 0.00 0.00 0.00 3.55
4388 7262 8.559536 CAATCTTCAGACTTAGTGTAAAAAGCA 58.440 33.333 0.00 0.00 0.00 3.91
4498 8033 6.564125 CGACAGAAGGTGAGTTGTTATGAAAC 60.564 42.308 0.00 0.00 36.07 2.78
4618 8229 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4685 8296 2.658807 ACTCCCTCTTGTCCCAAAAC 57.341 50.000 0.00 0.00 0.00 2.43
4696 8307 7.181125 CCCAAGCTTATATGTATTACTCCCTCT 59.819 40.741 0.00 0.00 0.00 3.69
4822 8433 3.472283 AGATGTGCCAAACAAAATGCA 57.528 38.095 0.00 0.00 43.61 3.96
4823 8434 4.060205 AGAAGATGTGCCAAACAAAATGC 58.940 39.130 0.00 0.00 43.61 3.56
4988 8670 3.686726 CCTTGGCTGATACAGAAACACTC 59.313 47.826 2.81 0.00 32.44 3.51
5113 8801 7.747690 AGAAGATTCTGATTCTGCCATAGATT 58.252 34.615 3.07 0.00 35.89 2.40
5855 9543 1.222567 GGAGCCTTATCCTTCCCCAA 58.777 55.000 0.00 0.00 36.35 4.12
5927 9615 0.337773 TGATCAGCCTCCTCCTCTGT 59.662 55.000 0.00 0.00 0.00 3.41
5931 9619 0.187117 TCGATGATCAGCCTCCTCCT 59.813 55.000 5.18 0.00 0.00 3.69
5932 9620 0.602562 CTCGATGATCAGCCTCCTCC 59.397 60.000 5.18 0.00 0.00 4.30
5933 9621 1.541147 CTCTCGATGATCAGCCTCCTC 59.459 57.143 5.18 0.00 0.00 3.71
6026 9720 1.360931 CCAAGTCGTGCGCATCATCA 61.361 55.000 15.91 0.00 0.00 3.07
6111 9805 3.035363 TGAGAACATACCTCGGGCATAA 58.965 45.455 0.00 0.00 33.51 1.90
6226 9920 6.076981 TCTTCCATGTTCTCTTTTCTTTGC 57.923 37.500 0.00 0.00 0.00 3.68
6632 10326 6.985059 AGTAAACACAACAGAGGAAGTAGTTC 59.015 38.462 1.31 1.31 0.00 3.01
6660 10354 5.516339 GGAAGTTCATTCGGTGCAAATATTG 59.484 40.000 5.01 0.00 38.95 1.90
6755 10449 5.070981 CAGCATCCAACCCTTTCTCTATCTA 59.929 44.000 0.00 0.00 0.00 1.98
6823 10529 2.037901 AGATCAGTCTCGGATGTGCAT 58.962 47.619 0.00 0.00 0.00 3.96
6841 10547 4.026052 TCCACTAGAGCATGTGATTCAGA 58.974 43.478 0.00 0.00 36.38 3.27
6865 10571 3.813166 ACAGTAACACGACCAGGAAATTG 59.187 43.478 0.00 0.00 0.00 2.32
6866 10572 4.081322 ACAGTAACACGACCAGGAAATT 57.919 40.909 0.00 0.00 0.00 1.82
6877 13581 1.127817 CAGCGCGAACAGTAACACG 59.872 57.895 12.10 0.00 0.00 4.49
6959 13663 2.601804 GTTTCTCTCGTTGCTCTCCTC 58.398 52.381 0.00 0.00 0.00 3.71
6960 13664 1.068194 CGTTTCTCTCGTTGCTCTCCT 60.068 52.381 0.00 0.00 0.00 3.69
6961 13665 1.341606 CGTTTCTCTCGTTGCTCTCC 58.658 55.000 0.00 0.00 0.00 3.71
6962 13666 1.336056 ACCGTTTCTCTCGTTGCTCTC 60.336 52.381 0.00 0.00 0.00 3.20
6963 13667 0.674534 ACCGTTTCTCTCGTTGCTCT 59.325 50.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.