AutoCloner

Multiple sequence alignment - TraesCS7D01G270900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G270900	chr7D	100.000	4335	0	0	1	4335	257712002	257716336	0.000000e+00	8006.0
1	TraesCS7D01G270900	chr7D	90.313	702	50	6	1	702	163391485	163390802	0.000000e+00	904.0
2	TraesCS7D01G270900	chr7D	88.802	509	34	11	309	794	329051949	329051441	1.720000e-168	603.0
3	TraesCS7D01G270900	chr7D	88.525	305	17	5	1	305	329063841	329063555	1.920000e-93	353.0
4	TraesCS7D01G270900	chr7D	77.670	206	27	11	611	798	633452612	633452408	1.650000e-19	108.0
5	TraesCS7D01G270900	chr7A	94.279	1748	46	21	801	2511	277448274	277446544	0.000000e+00	2625.0
6	TraesCS7D01G270900	chr7A	97.073	1435	29	2	2506	3928	277446182	277444749	0.000000e+00	2405.0
7	TraesCS7D01G270900	chr7A	91.943	422	26	2	3914	4335	277444732	277444319	6.250000e-163	584.0
8	TraesCS7D01G270900	chr7B	96.731	673	18	3	884	1553	237239095	237239766	0.000000e+00	1118.0
9	TraesCS7D01G270900	chr7B	84.896	821	80	11	1	795	216933125	216933927	0.000000e+00	789.0
10	TraesCS7D01G270900	chr7B	97.612	335	8	0	3695	4029	237241156	237241490	3.760000e-160	575.0
11	TraesCS7D01G270900	chr7B	85.161	310	19	3	4032	4335	237241823	237242111	4.240000e-75	292.0
12	TraesCS7D01G270900	chr7B	96.552	145	4	1	3524	3667	237241017	237241161	5.600000e-59	239.0
13	TraesCS7D01G270900	chr7B	88.889	126	12	2	3906	4030	237241832	237241956	2.090000e-33	154.0
14	TraesCS7D01G270900	chr4A	89.847	719	48	14	103	797	618556856	618557573	0.000000e+00	900.0
15	TraesCS7D01G270900	chr1D	83.578	816	88	25	1	796	247105824	247105035	0.000000e+00	723.0
16	TraesCS7D01G270900	chr3A	89.062	576	59	4	127	702	601605992	601605421	0.000000e+00	712.0
17	TraesCS7D01G270900	chr3D	87.561	619	59	8	2	620	582746962	582747562	0.000000e+00	701.0
18	TraesCS7D01G270900	chr3D	93.333	75	3	2	727	800	582747935	582748008	4.580000e-20	110.0
19	TraesCS7D01G270900	chr5A	88.203	551	65	0	108	658	42094895	42095445	0.000000e+00	658.0
20	TraesCS7D01G270900	chr2A	83.871	713	89	17	108	796	55097751	55098461	0.000000e+00	656.0
21	TraesCS7D01G270900	chr2A	78.238	193	42	0	157	349	709586083	709586275	1.640000e-24	124.0
22	TraesCS7D01G270900	chr4B	85.484	620	69	10	1	620	500525418	500526016	1.020000e-175	627.0
23	TraesCS7D01G270900	chr4B	88.889	90	9	1	708	796	48686877	48686788	4.580000e-20	110.0
24	TraesCS7D01G270900	chr2D	87.132	544	47	9	273	795	633437228	633437769	2.890000e-166	595.0
25	TraesCS7D01G270900	chr1A	82.955	88	13	1	4138	4223	533771074	533770987	1.290000e-10	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G270900	chr7D	257712002	257716336	4334	False	8006.000000	8006	100.000000	1	4335	1	chr7D.!!$F1	4334
1	TraesCS7D01G270900	chr7D	163390802	163391485	683	True	904.000000	904	90.313000	1	702	1	chr7D.!!$R1	701
2	TraesCS7D01G270900	chr7D	329051441	329051949	508	True	603.000000	603	88.802000	309	794	1	chr7D.!!$R2	485
3	TraesCS7D01G270900	chr7A	277444319	277448274	3955	True	1871.333333	2625	94.431667	801	4335	3	chr7A.!!$R1	3534
4	TraesCS7D01G270900	chr7B	216933125	216933927	802	False	789.000000	789	84.896000	1	795	1	chr7B.!!$F1	794
5	TraesCS7D01G270900	chr7B	237239095	237242111	3016	False	475.600000	1118	92.989000	884	4335	5	chr7B.!!$F2	3451
6	TraesCS7D01G270900	chr4A	618556856	618557573	717	False	900.000000	900	89.847000	103	797	1	chr4A.!!$F1	694
7	TraesCS7D01G270900	chr1D	247105035	247105824	789	True	723.000000	723	83.578000	1	796	1	chr1D.!!$R1	795
8	TraesCS7D01G270900	chr3A	601605421	601605992	571	True	712.000000	712	89.062000	127	702	1	chr3A.!!$R1	575
9	TraesCS7D01G270900	chr3D	582746962	582748008	1046	False	405.500000	701	90.447000	2	800	2	chr3D.!!$F1	798
10	TraesCS7D01G270900	chr5A	42094895	42095445	550	False	658.000000	658	88.203000	108	658	1	chr5A.!!$F1	550
11	TraesCS7D01G270900	chr2A	55097751	55098461	710	False	656.000000	656	83.871000	108	796	1	chr2A.!!$F1	688
12	TraesCS7D01G270900	chr4B	500525418	500526016	598	False	627.000000	627	85.484000	1	620	1	chr4B.!!$F1	619
13	TraesCS7D01G270900	chr2D	633437228	633437769	541	False	595.000000	595	87.132000	273	795	1	chr2D.!!$F1	522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
862	1142	1.000955	GCATATACGGGGACTCCACTG	59.999	57.143	34.36	3.66	F
1201	1489	1.682684	ATCGCAGTCTCCCCTCGTT	60.683	57.895	0.00	3.85	F
2807	4217	2.183478	ATGATGCACTGTCGGTTGAA	57.817	45.000	0.00	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
2807	4217	0.678395	CATAGTCATCCGCAGCTCCT	59.322	55.0	0.00	3.69	R
3059	4469	2.480419	GACCATAAGTGCGATATGTGCC	59.520	50.0	0.00	5.01	R
4156	5933	0.771127	TCTTTTGCCTAGCCAGTGGT	59.229	50.0	11.74	4.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
274	278	4.162690	CCCCACGAGCCTACCTGC	62.163	72.222	0.00	0.00	0.00	4.85
505	509	3.848047	GGCATGGTGGCTATGGAAACAG	61.848	54.545	0.00	0.00	41.62	3.16
517	521	3.334820	TGGAAACAGCGCAATGTCTGC	62.335	52.381	11.47	0.00	41.27	4.26
702	715	3.272334	GTCGTCGCATGCCATCCC	61.272	66.667	13.15	0.00	0.00	3.85
703	716	4.545706	TCGTCGCATGCCATCCCC	62.546	66.667	13.15	0.00	0.00	4.81
862	1142	1.000955	GCATATACGGGGACTCCACTG	59.999	57.143	0.00	0.00	34.36	3.66
975	1263	1.850441	CTCGACGGGTATAAAGCAACG	59.150	52.381	0.00	0.00	0.00	4.10
1200	1488	2.043852	ATCGCAGTCTCCCCTCGT	60.044	61.111	0.00	0.00	0.00	4.18
1201	1489	1.682684	ATCGCAGTCTCCCCTCGTT	60.683	57.895	0.00	0.00	0.00	3.85
1479	1767	2.436911	GGCCGGGAAGAGGTCTAATTTA	59.563	50.000	2.18	0.00	0.00	1.40
1483	1772	6.293698	GCCGGGAAGAGGTCTAATTTATTTA	58.706	40.000	2.18	0.00	0.00	1.40
1653	1942	3.823873	CTCTCTAAGGTGCTCGTATGGAT	59.176	47.826	0.00	0.00	0.00	3.41
1723	2012	4.941263	CGGAAATGGGACTTCAATGACTAA	59.059	41.667	0.00	0.00	0.00	2.24
1724	2013	5.065218	CGGAAATGGGACTTCAATGACTAAG	59.935	44.000	0.00	0.00	0.00	2.18
1725	2014	5.163612	GGAAATGGGACTTCAATGACTAAGC	60.164	44.000	0.00	0.00	0.00	3.09
1726	2015	3.350219	TGGGACTTCAATGACTAAGCC	57.650	47.619	0.00	0.00	0.00	4.35
1727	2016	2.280628	GGGACTTCAATGACTAAGCCG	58.719	52.381	0.00	0.00	0.00	5.52
1728	2017	2.354805	GGGACTTCAATGACTAAGCCGT	60.355	50.000	0.00	0.00	0.00	5.68
1729	2018	2.673368	GGACTTCAATGACTAAGCCGTG	59.327	50.000	0.00	0.00	0.00	4.94
1730	2019	3.585862	GACTTCAATGACTAAGCCGTGA	58.414	45.455	0.00	0.00	0.00	4.35
1791	2315	4.142491	TGCTATTATTTGCGTTCTGTTGGG	60.142	41.667	0.00	0.00	0.00	4.12
1828	2352	5.408880	TGGTTACGGTTCTGTTGATATGA	57.591	39.130	0.00	0.00	0.00	2.15
1831	2355	5.291128	GGTTACGGTTCTGTTGATATGAGTG	59.709	44.000	0.00	0.00	0.00	3.51
1942	2467	3.869747	GCACATGCACATTGTCACA	57.130	47.368	0.00	0.00	41.59	3.58
1954	2479	9.656040	ATGCACATTGTCACATTATTGTAATTT	57.344	25.926	0.00	0.00	33.76	1.82
1999	2544	6.466885	ACTTCCGTCAGCTACTACATAATT	57.533	37.500	0.00	0.00	0.00	1.40
2000	2545	6.505272	ACTTCCGTCAGCTACTACATAATTC	58.495	40.000	0.00	0.00	0.00	2.17
2002	2547	6.710597	TCCGTCAGCTACTACATAATTCTT	57.289	37.500	0.00	0.00	0.00	2.52
2046	2591	7.366847	AGAGAGCTGAATTATGCCTTTAGTA	57.633	36.000	0.00	0.00	0.00	1.82
2230	2775	9.744468	GAAGATTGTACTTAATTGGTTTTGTGT	57.256	29.630	0.00	0.00	0.00	3.72
2232	2777	9.528018	AGATTGTACTTAATTGGTTTTGTGTTG	57.472	29.630	0.00	0.00	0.00	3.33
2316	3345	7.933577	TCACTCAGATATTTATGTTGGATGGTC	59.066	37.037	0.00	0.00	0.00	4.02
2343	3372	3.833559	ATGGGGAAAGAATTGAGGTGT	57.166	42.857	0.00	0.00	0.00	4.16
2373	3402	7.417342	GGCATTCTTATAGGTTACATTTGGCAA	60.417	37.037	0.00	0.00	0.00	4.52
2447	3478	3.632604	TCGAGTTGAGAGAGAGTTGTGTT	59.367	43.478	0.00	0.00	0.00	3.32
2561	3959	6.870971	AAAACCACACGTCATATTTGTACT	57.129	33.333	0.00	0.00	0.00	2.73
2739	4149	9.793259	AGGATTGTACTCACATTTTTCTTTCTA	57.207	29.630	0.00	0.00	33.76	2.10
2807	4217	2.183478	ATGATGCACTGTCGGTTGAA	57.817	45.000	0.00	0.00	0.00	2.69
3059	4469	2.293677	TCCCTGTGATCAATTCGTCG	57.706	50.000	0.00	0.00	0.00	5.12
3124	4534	1.334869	AGTTCACAAAGCGCTTTCAGG	59.665	47.619	31.63	22.51	0.00	3.86
3252	4662	7.609532	GGATCTGAAGCCTGTTATGCTATAAAT	59.390	37.037	0.00	0.00	38.34	1.40
3360	4770	5.633601	GCATATAGTAGAGCGTAAATGTGCA	59.366	40.000	0.00	0.00	33.36	4.57
3403	4813	9.671279	TCATAATATGAGTAAGTAATGGCCATG	57.329	33.333	21.63	0.90	33.59	3.66
3515	4925	4.986054	TCTTTGGACTAAGGTTGCCTTA	57.014	40.909	7.34	7.34	42.74	2.69
3667	5078	5.980715	TGCTTTTTAAAATCCAACTTCGACC	59.019	36.000	0.55	0.00	0.00	4.79
4030	5471	2.533266	GCAAAAGATTTGCCTCATCCG	58.467	47.619	15.12	0.00	39.38	4.18
4054	5825	6.571731	CGGTGATTAAGAGTTGTAGGTTCTGA	60.572	42.308	0.00	0.00	0.00	3.27
4093	5864	4.217334	TGTGATGCATTCCGTAACACATTT	59.783	37.500	10.17	0.00	33.04	2.32
4182	5959	3.823304	CTGGCTAGGCAAAAGAGAGTTTT	59.177	43.478	20.64	0.00	0.00	2.43
4205	5982	7.503521	TTAGTTAATTAACGAAAAACCGGGT	57.496	32.000	19.92	0.00	40.96	5.28
4221	5998	3.955551	ACCGGGTAAAAACTGACACAAAT	59.044	39.130	6.32	0.00	0.00	2.32
4229	6006	3.988379	AACTGACACAAATCGTTGCAT	57.012	38.095	0.00	0.00	38.39	3.96
4236	6013	1.273048	ACAAATCGTTGCATGGCACAT	59.727	42.857	0.00	0.00	40.30	3.21
4299	6076	4.755123	TCGAGATAGCATACTTCGTCATCA	59.245	41.667	0.00	0.00	33.25	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
123	124	2.187946	CCTCGGTGGATCCAGTGC	59.812	66.667	16.81	3.04	38.35	4.40
145	146	3.807538	CAGGTGATGCGCCAGTGC	61.808	66.667	4.18	0.00	36.32	4.40
274	278	1.138661	GGCTCCTGATCACAGAGAAGG	59.861	57.143	18.20	5.55	46.03	3.46
683	696	1.889105	GGATGGCATGCGACGACAT	60.889	57.895	12.44	8.89	0.00	3.06
702	715	4.402474	GGATGTTACATGAAGGAAAAGGGG	59.598	45.833	1.24	0.00	0.00	4.79
703	716	5.016173	TGGATGTTACATGAAGGAAAAGGG	58.984	41.667	1.24	0.00	0.00	3.95
704	717	6.153340	ACATGGATGTTACATGAAGGAAAAGG	59.847	38.462	1.24	0.00	46.60	3.11
706	719	8.642935	TTACATGGATGTTACATGAAGGAAAA	57.357	30.769	1.24	0.00	46.60	2.29
707	720	8.821686	ATTACATGGATGTTACATGAAGGAAA	57.178	30.769	1.24	0.00	46.60	3.13
709	722	8.274322	AGAATTACATGGATGTTACATGAAGGA	58.726	33.333	1.24	0.00	46.60	3.36
710	723	8.455903	AGAATTACATGGATGTTACATGAAGG	57.544	34.615	1.24	0.00	46.60	3.46
711	724	9.726232	CAAGAATTACATGGATGTTACATGAAG	57.274	33.333	1.24	0.00	46.60	3.02
712	725	8.190122	GCAAGAATTACATGGATGTTACATGAA	58.810	33.333	1.24	0.00	46.60	2.57
713	726	7.557358	AGCAAGAATTACATGGATGTTACATGA	59.443	33.333	1.24	0.00	46.60	3.07
796	1076	4.645588	TGCCATTGCTACAAATCATCATGA	59.354	37.500	0.00	0.00	38.71	3.07
797	1077	4.939271	TGCCATTGCTACAAATCATCATG	58.061	39.130	0.00	0.00	38.71	3.07
798	1078	5.601583	TTGCCATTGCTACAAATCATCAT	57.398	34.783	0.00	0.00	38.71	2.45
799	1079	5.402997	TTTGCCATTGCTACAAATCATCA	57.597	34.783	0.00	0.00	38.71	3.07
837	1117	0.969894	AGTCCCCGTATATGCAGCTC	59.030	55.000	0.00	0.00	0.00	4.09
838	1118	0.969894	GAGTCCCCGTATATGCAGCT	59.030	55.000	0.00	0.00	0.00	4.24
839	1119	0.037232	GGAGTCCCCGTATATGCAGC	60.037	60.000	0.00	0.00	0.00	5.25
840	1120	1.000955	GTGGAGTCCCCGTATATGCAG	59.999	57.143	6.74	0.00	37.93	4.41
841	1121	1.045407	GTGGAGTCCCCGTATATGCA	58.955	55.000	6.74	0.00	37.93	3.96
842	1122	1.000955	CAGTGGAGTCCCCGTATATGC	59.999	57.143	6.74	0.00	37.93	3.14
844	1124	2.011122	CCAGTGGAGTCCCCGTATAT	57.989	55.000	1.68	0.00	37.93	0.86
845	1125	0.757935	GCCAGTGGAGTCCCCGTATA	60.758	60.000	15.20	0.00	37.93	1.47
846	1126	2.064581	GCCAGTGGAGTCCCCGTAT	61.065	63.158	15.20	0.00	37.93	3.06
847	1127	1.866483	TAGCCAGTGGAGTCCCCGTA	61.866	60.000	15.20	0.00	37.93	4.02
848	1128	3.233919	TAGCCAGTGGAGTCCCCGT	62.234	63.158	15.20	0.00	37.93	5.28
849	1129	2.363795	TAGCCAGTGGAGTCCCCG	60.364	66.667	15.20	0.00	37.93	5.73
850	1130	2.066999	CCTAGCCAGTGGAGTCCCC	61.067	68.421	15.20	0.00	0.00	4.81
851	1131	2.066999	CCCTAGCCAGTGGAGTCCC	61.067	68.421	15.20	0.00	0.00	4.46
975	1263	1.747355	CAGGTGGATTGGAAGATGTGC	59.253	52.381	0.00	0.00	0.00	4.57
1600	1889	4.759693	TCCATGGCAAGTTTGTAGTTACTG	59.240	41.667	6.96	0.00	0.00	2.74
1653	1942	7.942341	ACCCAACAGTAAGTTCATCAAAGATTA	59.058	33.333	0.00	0.00	38.74	1.75
1723	2012	1.267121	ATCCAGTTACTGTCACGGCT	58.733	50.000	11.68	0.00	0.00	5.52
1724	2013	2.953466	TATCCAGTTACTGTCACGGC	57.047	50.000	11.68	0.00	0.00	5.68
1725	2014	5.043903	CAGAATATCCAGTTACTGTCACGG	58.956	45.833	11.68	0.00	0.00	4.94
1726	2015	5.891451	TCAGAATATCCAGTTACTGTCACG	58.109	41.667	11.68	0.00	0.00	4.35
1727	2016	7.268586	ACATCAGAATATCCAGTTACTGTCAC	58.731	38.462	11.68	0.00	0.00	3.67
1728	2017	7.423844	ACATCAGAATATCCAGTTACTGTCA	57.576	36.000	11.68	0.00	0.00	3.58
1729	2018	8.723942	AAACATCAGAATATCCAGTTACTGTC	57.276	34.615	11.68	1.89	0.00	3.51
1730	2019	8.950210	CAAAACATCAGAATATCCAGTTACTGT	58.050	33.333	11.68	0.00	0.00	3.55
1791	2315	7.023197	ACCGTAACCATAAATAATGACAAGC	57.977	36.000	0.00	0.00	37.86	4.01
1910	2435	2.417933	GCATGTGCAGGTTCAACTCTAG	59.582	50.000	0.00	0.00	41.59	2.43
1954	2479	8.439964	AAGTTCCCTACTTTATACACCACTAA	57.560	34.615	0.00	0.00	44.73	2.24
1999	2544	7.638444	TCTAATTTATGTCCACAATCCCAAGA	58.362	34.615	0.00	0.00	0.00	3.02
2000	2545	7.775093	TCTCTAATTTATGTCCACAATCCCAAG	59.225	37.037	0.00	0.00	0.00	3.61
2002	2547	7.206789	TCTCTAATTTATGTCCACAATCCCA	57.793	36.000	0.00	0.00	0.00	4.37
2046	2591	8.804912	ATCTTTGCTTATTCACTGAGATTTCT	57.195	30.769	0.00	0.00	0.00	2.52
2256	2801	4.810191	ATTTTCAGTTCTAGACCGCTCT	57.190	40.909	0.00	0.00	0.00	4.09
2300	3327	7.391554	CCATAGAATCGACCATCCAACATAAAT	59.608	37.037	0.00	0.00	0.00	1.40
2316	3345	5.471456	CCTCAATTCTTTCCCCATAGAATCG	59.529	44.000	0.00	0.00	39.53	3.34
2343	3372	8.849168	CAAATGTAACCTATAAGAATGCCATGA	58.151	33.333	0.00	0.00	0.00	3.07
2429	3458	4.054671	CAGGAACACAACTCTCTCTCAAC	58.945	47.826	0.00	0.00	0.00	3.18
2447	3478	3.117284	AGCTAACAAAGAAAACCCCAGGA	60.117	43.478	0.00	0.00	0.00	3.86
2739	4149	5.499004	ACCGGCACCTATATTTGACATAT	57.501	39.130	0.00	0.00	0.00	1.78
2807	4217	0.678395	CATAGTCATCCGCAGCTCCT	59.322	55.000	0.00	0.00	0.00	3.69
3059	4469	2.480419	GACCATAAGTGCGATATGTGCC	59.520	50.000	0.00	0.00	0.00	5.01
3252	4662	4.243793	TCCTGAAGGTGGAAGTTTCAAA	57.756	40.909	0.00	0.00	36.34	2.69
3321	4731	8.860088	TCTACTATATGCTACAAAATCAGCTCA	58.140	33.333	0.00	0.00	38.63	4.26
3403	4813	5.107133	CCCGACGAACATATATCCCATAAC	58.893	45.833	0.00	0.00	0.00	1.89
3479	4889	5.073144	AGTCCAAAGAACATTCTGGGTAGAA	59.927	40.000	10.68	0.00	46.32	2.10
3639	5049	8.353684	TCGAAGTTGGATTTTAAAAAGCATACA	58.646	29.630	4.44	0.00	0.00	2.29
3721	5132	6.454795	TGTTGAATTTGTATTGAAAGGGAGC	58.545	36.000	0.00	0.00	0.00	4.70
4030	5471	6.698380	TCAGAACCTACAACTCTTAATCACC	58.302	40.000	0.00	0.00	0.00	4.02
4054	5825	5.128919	GCATCACAGGGATCTTAGTTCAAT	58.871	41.667	0.00	0.00	32.57	2.57
4093	5864	5.791336	AATGCCTGATCATCTAGTCGTAA	57.209	39.130	0.00	0.00	0.00	3.18
4108	5879	3.441496	ACTGTTGTCACAAAATGCCTG	57.559	42.857	0.00	0.00	30.36	4.85
4156	5933	0.771127	TCTTTTGCCTAGCCAGTGGT	59.229	50.000	11.74	0.00	0.00	4.16
4182	5959	8.608844	TTACCCGGTTTTTCGTTAATTAACTA	57.391	30.769	22.57	11.86	34.12	2.24
4205	5982	5.641709	TGCAACGATTTGTGTCAGTTTTTA	58.358	33.333	0.00	0.00	34.90	1.52
4221	5998	3.467374	TCTATATGTGCCATGCAACGA	57.533	42.857	0.00	0.00	41.47	3.85
4229	6006	5.365314	TGTGTGAGGTATTCTATATGTGCCA	59.635	40.000	0.00	0.00	0.00	4.92
4236	6013	6.669631	TGAGGTCTGTGTGAGGTATTCTATA	58.330	40.000	0.00	0.00	0.00	1.31
4299	6076	2.049627	GCTTGGGGAGATGCGGAGAT	62.050	60.000	0.00	0.00	0.00	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.