Multiple sequence alignment - TraesCS7D01G269900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G269900 chr7D 100.000 3860 0 0 1 3860 254990768 254994627 0.000000e+00 7129.0
1 TraesCS7D01G269900 chr7D 97.009 234 5 2 1 232 516990004 516989771 3.620000e-105 392.0
2 TraesCS7D01G269900 chr7B 91.618 2911 149 41 232 3110 232756796 232759643 0.000000e+00 3936.0
3 TraesCS7D01G269900 chr7B 91.289 551 30 7 3130 3674 232759633 232760171 0.000000e+00 736.0
4 TraesCS7D01G269900 chr7B 91.429 140 11 1 3721 3860 232760168 232760306 1.420000e-44 191.0
5 TraesCS7D01G269900 chr7B 92.727 55 4 0 3673 3727 522138181 522138235 3.200000e-11 80.5
6 TraesCS7D01G269900 chr7B 89.655 58 5 1 3670 3727 115235 115291 5.350000e-09 73.1
7 TraesCS7D01G269900 chr7A 91.562 1600 93 20 375 1954 274322229 274323806 0.000000e+00 2169.0
8 TraesCS7D01G269900 chr7A 94.668 994 31 11 1953 2929 274324150 274325138 0.000000e+00 1522.0
9 TraesCS7D01G269900 chr7A 93.018 444 24 4 3130 3567 274385921 274386363 3.250000e-180 641.0
10 TraesCS7D01G269900 chr7A 90.722 194 13 4 2918 3111 274385744 274385932 1.780000e-63 254.0
11 TraesCS7D01G269900 chr3D 92.050 239 14 5 2 238 46254941 46254706 7.990000e-87 331.0
12 TraesCS7D01G269900 chr1B 91.915 235 13 6 1 232 303682254 303682485 1.340000e-84 324.0
13 TraesCS7D01G269900 chr2D 92.453 212 13 3 23 232 18310521 18310311 2.250000e-77 300.0
14 TraesCS7D01G269900 chr5D 91.667 204 12 2 434 637 481594846 481594648 1.060000e-70 278.0
15 TraesCS7D01G269900 chr5D 91.667 204 12 2 434 637 481595685 481595883 1.060000e-70 278.0
16 TraesCS7D01G269900 chr5D 91.667 204 12 2 434 637 503311428 503311626 1.060000e-70 278.0
17 TraesCS7D01G269900 chr5D 91.667 204 12 2 434 637 503334049 503334247 1.060000e-70 278.0
18 TraesCS7D01G269900 chr5D 91.667 204 12 2 434 637 503337363 503337561 1.060000e-70 278.0
19 TraesCS7D01G269900 chr1D 91.667 204 12 2 434 637 254454559 254454757 1.060000e-70 278.0
20 TraesCS7D01G269900 chr1D 92.453 53 4 0 3681 3733 58573671 58573619 4.140000e-10 76.8
21 TraesCS7D01G269900 chr1A 91.667 204 12 2 434 637 554480180 554480378 1.060000e-70 278.0
22 TraesCS7D01G269900 chr2B 88.034 234 23 5 1 232 239459642 239459412 4.910000e-69 272.0
23 TraesCS7D01G269900 chr2B 88.333 60 7 0 3681 3740 583417120 583417061 5.350000e-09 73.1
24 TraesCS7D01G269900 chr3B 87.255 204 17 6 1 203 580522836 580523031 1.400000e-54 224.0
25 TraesCS7D01G269900 chr5A 84.513 226 21 6 4 227 9341658 9341445 1.090000e-50 211.0
26 TraesCS7D01G269900 chr5A 91.892 74 4 2 143 215 606523944 606524016 6.820000e-18 102.0
27 TraesCS7D01G269900 chr5A 91.071 56 5 0 3671 3726 482768156 482768101 4.140000e-10 76.8
28 TraesCS7D01G269900 chr5A 87.500 64 6 2 3681 3743 472310982 472310920 5.350000e-09 73.1
29 TraesCS7D01G269900 chr5B 94.340 53 3 0 3670 3722 222375779 222375831 8.890000e-12 82.4
30 TraesCS7D01G269900 chr2A 89.655 58 5 1 3667 3724 450885265 450885209 5.350000e-09 73.1
31 TraesCS7D01G269900 chr3A 85.294 68 9 1 3671 3738 505237243 505237309 6.920000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G269900 chr7D 254990768 254994627 3859 False 7129.0 7129 100.000000 1 3860 1 chr7D.!!$F1 3859
1 TraesCS7D01G269900 chr7B 232756796 232760306 3510 False 1621.0 3936 91.445333 232 3860 3 chr7B.!!$F3 3628
2 TraesCS7D01G269900 chr7A 274322229 274325138 2909 False 1845.5 2169 93.115000 375 2929 2 chr7A.!!$F1 2554
3 TraesCS7D01G269900 chr7A 274385744 274386363 619 False 447.5 641 91.870000 2918 3567 2 chr7A.!!$F2 649
4 TraesCS7D01G269900 chr5D 503334049 503337561 3512 False 278.0 278 91.667000 434 637 2 chr5D.!!$F3 203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.093705 GATTGCTCGACTGTTGACGC 59.906 55.0 10.62 10.62 0.00 5.19 F
343 344 0.468226 TTGGTCGCCAGAACTTGTCT 59.532 50.0 0.00 0.00 36.88 3.41 F
1602 4944 0.546507 TGGGTATGTGCCACCTGAGA 60.547 55.0 0.00 0.00 36.25 3.27 F
2308 6002 0.528017 TTCACTGCTACAGCCTCTCG 59.472 55.0 0.00 0.00 41.18 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 4754 0.039798 TTCGACGAGAGAAACGGTGG 60.040 55.0 0.00 0.00 34.93 4.61 R
1636 4978 0.394352 ATCGTCCCAACAAGATGGCC 60.394 55.0 0.00 0.00 39.26 5.36 R
2687 6396 0.677288 TTATATGTACGGCGGCAGCT 59.323 50.0 13.24 4.18 44.37 4.24 R
3605 7323 0.321122 AACTGCCCTTCTTCTCAGCG 60.321 55.0 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.884636 AGCTTGAAATTTTTAAACCACTAAAGT 57.115 25.926 0.00 0.00 0.00 2.66
63 64 8.859517 TGAAATTTTTAAACCACTAAAGTCGG 57.140 30.769 0.00 0.00 0.00 4.79
64 65 8.468399 TGAAATTTTTAAACCACTAAAGTCGGT 58.532 29.630 0.00 0.21 33.16 4.69
65 66 9.304731 GAAATTTTTAAACCACTAAAGTCGGTT 57.695 29.630 9.69 9.69 39.41 4.44
66 67 8.637281 AATTTTTAAACCACTAAAGTCGGTTG 57.363 30.769 13.92 0.00 38.49 3.77
67 68 4.816786 TTAAACCACTAAAGTCGGTTGC 57.183 40.909 13.92 0.00 38.49 4.17
68 69 2.632987 AACCACTAAAGTCGGTTGCT 57.367 45.000 12.97 0.00 37.73 3.91
69 70 3.756933 AACCACTAAAGTCGGTTGCTA 57.243 42.857 12.97 0.00 37.73 3.49
70 71 3.314541 ACCACTAAAGTCGGTTGCTAG 57.685 47.619 0.00 0.00 0.00 3.42
71 72 2.895404 ACCACTAAAGTCGGTTGCTAGA 59.105 45.455 0.00 0.00 0.00 2.43
72 73 3.056749 ACCACTAAAGTCGGTTGCTAGAG 60.057 47.826 0.00 0.00 0.00 2.43
73 74 3.512680 CACTAAAGTCGGTTGCTAGAGG 58.487 50.000 0.00 0.00 0.00 3.69
74 75 3.192844 CACTAAAGTCGGTTGCTAGAGGA 59.807 47.826 0.00 0.00 0.00 3.71
75 76 2.745515 AAAGTCGGTTGCTAGAGGAC 57.254 50.000 0.00 0.00 0.00 3.85
76 77 1.629043 AAGTCGGTTGCTAGAGGACA 58.371 50.000 0.00 0.00 0.00 4.02
77 78 0.889306 AGTCGGTTGCTAGAGGACAC 59.111 55.000 0.00 0.00 0.00 3.67
78 79 0.889306 GTCGGTTGCTAGAGGACACT 59.111 55.000 0.00 0.00 0.00 3.55
79 80 0.888619 TCGGTTGCTAGAGGACACTG 59.111 55.000 0.00 0.00 0.00 3.66
80 81 0.108615 CGGTTGCTAGAGGACACTGG 60.109 60.000 0.00 0.00 0.00 4.00
81 82 1.267121 GGTTGCTAGAGGACACTGGA 58.733 55.000 0.00 0.00 0.00 3.86
82 83 1.066787 GGTTGCTAGAGGACACTGGAC 60.067 57.143 0.00 0.00 0.00 4.02
83 84 1.618837 GTTGCTAGAGGACACTGGACA 59.381 52.381 0.00 0.00 0.00 4.02
84 85 2.234908 GTTGCTAGAGGACACTGGACAT 59.765 50.000 0.00 0.00 0.00 3.06
85 86 3.382083 TGCTAGAGGACACTGGACATA 57.618 47.619 0.00 0.00 0.00 2.29
86 87 3.024547 TGCTAGAGGACACTGGACATAC 58.975 50.000 0.00 0.00 0.00 2.39
87 88 3.024547 GCTAGAGGACACTGGACATACA 58.975 50.000 0.00 0.00 0.00 2.29
88 89 3.447586 GCTAGAGGACACTGGACATACAA 59.552 47.826 0.00 0.00 0.00 2.41
89 90 4.081642 GCTAGAGGACACTGGACATACAAA 60.082 45.833 0.00 0.00 0.00 2.83
90 91 4.543590 AGAGGACACTGGACATACAAAG 57.456 45.455 0.00 0.00 0.00 2.77
91 92 3.003480 GAGGACACTGGACATACAAAGC 58.997 50.000 0.00 0.00 0.00 3.51
92 93 2.084546 GGACACTGGACATACAAAGCC 58.915 52.381 0.00 0.00 0.00 4.35
93 94 2.084546 GACACTGGACATACAAAGCCC 58.915 52.381 0.00 0.00 0.00 5.19
94 95 1.086696 CACTGGACATACAAAGCCCG 58.913 55.000 0.00 0.00 0.00 6.13
95 96 0.690762 ACTGGACATACAAAGCCCGT 59.309 50.000 0.00 0.00 0.00 5.28
96 97 1.338769 ACTGGACATACAAAGCCCGTC 60.339 52.381 0.00 0.00 0.00 4.79
97 98 0.981183 TGGACATACAAAGCCCGTCT 59.019 50.000 0.00 0.00 0.00 4.18
98 99 1.338674 TGGACATACAAAGCCCGTCTG 60.339 52.381 0.00 0.00 0.00 3.51
99 100 0.727398 GACATACAAAGCCCGTCTGC 59.273 55.000 0.00 0.00 0.00 4.26
100 101 0.324943 ACATACAAAGCCCGTCTGCT 59.675 50.000 0.00 0.00 45.43 4.24
101 102 1.553248 ACATACAAAGCCCGTCTGCTA 59.447 47.619 0.00 0.00 41.80 3.49
102 103 1.933853 CATACAAAGCCCGTCTGCTAC 59.066 52.381 0.00 0.00 41.80 3.58
103 104 1.263356 TACAAAGCCCGTCTGCTACT 58.737 50.000 0.00 0.00 41.80 2.57
104 105 0.320771 ACAAAGCCCGTCTGCTACTG 60.321 55.000 0.00 0.00 41.80 2.74
105 106 0.320771 CAAAGCCCGTCTGCTACTGT 60.321 55.000 0.00 0.00 41.80 3.55
106 107 1.067142 CAAAGCCCGTCTGCTACTGTA 60.067 52.381 0.00 0.00 41.80 2.74
107 108 0.818296 AAGCCCGTCTGCTACTGTAG 59.182 55.000 10.48 10.48 41.80 2.74
119 120 2.292292 GCTACTGTAGCCTACTCTCTGC 59.708 54.545 25.62 0.44 45.95 4.26
120 121 2.516227 ACTGTAGCCTACTCTCTGCA 57.484 50.000 3.13 0.00 0.00 4.41
121 122 2.374184 ACTGTAGCCTACTCTCTGCAG 58.626 52.381 7.63 7.63 44.85 4.41
122 123 2.291282 ACTGTAGCCTACTCTCTGCAGT 60.291 50.000 14.67 7.07 46.44 4.40
123 124 2.095461 TGTAGCCTACTCTCTGCAGTG 58.905 52.381 14.67 11.96 0.00 3.66
124 125 2.290960 TGTAGCCTACTCTCTGCAGTGA 60.291 50.000 17.04 17.04 0.00 3.41
125 126 1.181786 AGCCTACTCTCTGCAGTGAC 58.818 55.000 14.67 4.48 0.00 3.67
126 127 0.174617 GCCTACTCTCTGCAGTGACC 59.825 60.000 14.67 0.00 0.00 4.02
127 128 1.846007 CCTACTCTCTGCAGTGACCT 58.154 55.000 14.67 5.15 0.00 3.85
128 129 1.476085 CCTACTCTCTGCAGTGACCTG 59.524 57.143 14.67 7.72 41.91 4.00
129 130 1.476085 CTACTCTCTGCAGTGACCTGG 59.524 57.143 14.67 7.37 39.22 4.45
130 131 1.079266 CTCTCTGCAGTGACCTGGC 60.079 63.158 14.67 0.00 39.22 4.85
131 132 1.534959 TCTCTGCAGTGACCTGGCT 60.535 57.895 14.67 0.00 39.22 4.75
132 133 0.251787 TCTCTGCAGTGACCTGGCTA 60.252 55.000 14.67 0.00 39.22 3.93
133 134 0.175302 CTCTGCAGTGACCTGGCTAG 59.825 60.000 14.67 0.00 39.22 3.42
134 135 1.449246 CTGCAGTGACCTGGCTAGC 60.449 63.158 6.04 6.04 39.22 3.42
135 136 1.897225 CTGCAGTGACCTGGCTAGCT 61.897 60.000 15.72 0.00 39.22 3.32
136 137 0.614697 TGCAGTGACCTGGCTAGCTA 60.615 55.000 15.72 7.83 39.22 3.32
137 138 0.179097 GCAGTGACCTGGCTAGCTAC 60.179 60.000 15.72 0.00 39.22 3.58
138 139 1.186200 CAGTGACCTGGCTAGCTACA 58.814 55.000 15.72 3.94 34.90 2.74
139 140 1.135915 CAGTGACCTGGCTAGCTACAG 59.864 57.143 15.72 13.89 34.90 2.74
140 141 1.187087 GTGACCTGGCTAGCTACAGT 58.813 55.000 15.72 6.70 32.90 3.55
141 142 1.134965 GTGACCTGGCTAGCTACAGTG 60.135 57.143 15.72 10.44 32.90 3.66
142 143 0.179097 GACCTGGCTAGCTACAGTGC 60.179 60.000 15.72 4.87 32.90 4.40
143 144 0.904865 ACCTGGCTAGCTACAGTGCA 60.905 55.000 15.72 0.78 32.90 4.57
144 145 0.467384 CCTGGCTAGCTACAGTGCAT 59.533 55.000 15.72 0.00 32.90 3.96
145 146 1.539929 CCTGGCTAGCTACAGTGCATC 60.540 57.143 15.72 0.00 32.90 3.91
146 147 0.103026 TGGCTAGCTACAGTGCATCG 59.897 55.000 15.72 0.00 34.99 3.84
147 148 1.218230 GGCTAGCTACAGTGCATCGC 61.218 60.000 15.72 0.00 34.99 4.58
148 149 0.249238 GCTAGCTACAGTGCATCGCT 60.249 55.000 7.70 0.00 34.99 4.93
149 150 1.804372 GCTAGCTACAGTGCATCGCTT 60.804 52.381 7.70 0.00 34.99 4.68
150 151 1.857217 CTAGCTACAGTGCATCGCTTG 59.143 52.381 0.00 0.00 34.99 4.01
160 161 2.153913 CATCGCTTGCTATACGGGC 58.846 57.895 0.00 0.00 0.00 6.13
161 162 0.319900 CATCGCTTGCTATACGGGCT 60.320 55.000 0.00 0.00 0.00 5.19
162 163 0.319900 ATCGCTTGCTATACGGGCTG 60.320 55.000 0.00 0.00 0.00 4.85
163 164 1.956170 CGCTTGCTATACGGGCTGG 60.956 63.158 0.00 0.00 0.00 4.85
164 165 2.254464 GCTTGCTATACGGGCTGGC 61.254 63.158 0.00 0.00 0.00 4.85
165 166 1.598130 CTTGCTATACGGGCTGGCC 60.598 63.158 10.75 10.75 0.00 5.36
207 208 0.093705 GATTGCTCGACTGTTGACGC 59.906 55.000 10.62 10.62 0.00 5.19
208 209 0.599991 ATTGCTCGACTGTTGACGCA 60.600 50.000 14.27 14.27 0.00 5.24
209 210 1.215014 TTGCTCGACTGTTGACGCAG 61.215 55.000 16.32 0.00 41.92 5.18
210 211 3.004734 GCTCGACTGTTGACGCAGC 62.005 63.158 11.95 3.77 39.96 5.25
211 212 1.661509 CTCGACTGTTGACGCAGCA 60.662 57.895 0.00 0.00 39.96 4.41
212 213 1.215014 CTCGACTGTTGACGCAGCAA 61.215 55.000 0.00 0.00 39.96 3.91
213 214 1.202568 CGACTGTTGACGCAGCAAG 59.797 57.895 0.00 0.00 39.96 4.01
214 215 1.082496 GACTGTTGACGCAGCAAGC 60.082 57.895 0.00 0.00 39.96 4.01
223 224 2.171940 GCAGCAAGCGTCGAACAG 59.828 61.111 0.00 0.00 0.00 3.16
224 225 2.856032 CAGCAAGCGTCGAACAGG 59.144 61.111 0.00 0.00 0.00 4.00
225 226 1.664649 CAGCAAGCGTCGAACAGGA 60.665 57.895 0.00 0.00 0.00 3.86
226 227 1.373497 AGCAAGCGTCGAACAGGAG 60.373 57.895 0.00 0.00 0.00 3.69
227 228 3.016474 GCAAGCGTCGAACAGGAGC 62.016 63.158 0.00 0.00 0.00 4.70
228 229 1.373497 CAAGCGTCGAACAGGAGCT 60.373 57.895 0.00 0.00 40.20 4.09
229 230 1.080434 AAGCGTCGAACAGGAGCTC 60.080 57.895 4.71 4.71 37.15 4.09
230 231 2.493907 AAGCGTCGAACAGGAGCTCC 62.494 60.000 26.22 26.22 37.15 4.70
246 247 1.677637 CTCCCCTCCTCTACAACGCC 61.678 65.000 0.00 0.00 0.00 5.68
250 251 2.040178 CCCTCCTCTACAACGCCTTAT 58.960 52.381 0.00 0.00 0.00 1.73
251 252 2.224066 CCCTCCTCTACAACGCCTTATG 60.224 54.545 0.00 0.00 0.00 1.90
252 253 2.474816 CTCCTCTACAACGCCTTATGC 58.525 52.381 0.00 0.00 0.00 3.14
260 261 1.019673 AACGCCTTATGCTGCATCAG 58.980 50.000 19.90 17.23 38.05 2.90
272 273 0.540454 TGCATCAGGGAAGCAGAGAG 59.460 55.000 0.00 0.00 31.25 3.20
319 320 1.452145 GCCCAACAAGCAAACCGAGA 61.452 55.000 0.00 0.00 0.00 4.04
320 321 1.247567 CCCAACAAGCAAACCGAGAT 58.752 50.000 0.00 0.00 0.00 2.75
322 323 1.135972 CCAACAAGCAAACCGAGATCG 60.136 52.381 0.00 0.00 39.44 3.69
332 333 2.582498 CGAGATCGGTTGGTCGCC 60.582 66.667 0.00 0.00 35.37 5.54
333 334 2.577059 GAGATCGGTTGGTCGCCA 59.423 61.111 0.00 0.00 0.00 5.69
334 335 1.519455 GAGATCGGTTGGTCGCCAG 60.519 63.158 0.00 0.00 33.81 4.85
335 336 1.945354 GAGATCGGTTGGTCGCCAGA 61.945 60.000 0.00 0.00 33.81 3.86
336 337 1.079405 GATCGGTTGGTCGCCAGAA 60.079 57.895 0.00 0.00 33.81 3.02
337 338 1.359459 GATCGGTTGGTCGCCAGAAC 61.359 60.000 0.00 0.00 33.81 3.01
338 339 1.827399 ATCGGTTGGTCGCCAGAACT 61.827 55.000 0.00 0.00 33.81 3.01
339 340 1.597027 CGGTTGGTCGCCAGAACTT 60.597 57.895 0.00 0.00 33.81 2.66
340 341 1.841663 CGGTTGGTCGCCAGAACTTG 61.842 60.000 0.00 0.00 33.81 3.16
341 342 0.818040 GGTTGGTCGCCAGAACTTGT 60.818 55.000 0.00 0.00 33.81 3.16
342 343 0.586802 GTTGGTCGCCAGAACTTGTC 59.413 55.000 0.00 0.00 33.81 3.18
343 344 0.468226 TTGGTCGCCAGAACTTGTCT 59.532 50.000 0.00 0.00 36.88 3.41
344 345 0.468226 TGGTCGCCAGAACTTGTCTT 59.532 50.000 0.00 0.00 32.70 3.01
345 346 1.149148 GGTCGCCAGAACTTGTCTTC 58.851 55.000 0.00 0.00 32.70 2.87
346 347 1.149148 GTCGCCAGAACTTGTCTTCC 58.851 55.000 0.00 0.00 32.70 3.46
347 348 1.048601 TCGCCAGAACTTGTCTTCCT 58.951 50.000 0.00 0.00 32.70 3.36
348 349 1.000955 TCGCCAGAACTTGTCTTCCTC 59.999 52.381 0.00 0.00 32.70 3.71
349 350 1.001406 CGCCAGAACTTGTCTTCCTCT 59.999 52.381 0.00 0.00 32.70 3.69
356 357 0.820871 CTTGTCTTCCTCTCCCCTCG 59.179 60.000 0.00 0.00 0.00 4.63
363 364 2.294078 CCTCTCCCCTCGCTTGGTT 61.294 63.158 0.00 0.00 0.00 3.67
364 365 1.219393 CTCTCCCCTCGCTTGGTTC 59.781 63.158 0.00 0.00 0.00 3.62
365 366 1.229209 TCTCCCCTCGCTTGGTTCT 60.229 57.895 0.00 0.00 0.00 3.01
366 367 1.219393 CTCCCCTCGCTTGGTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
367 368 1.535444 TCCCCTCGCTTGGTTCTCA 60.535 57.895 0.00 0.00 0.00 3.27
368 369 1.376037 CCCCTCGCTTGGTTCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
369 370 1.674057 CCCTCGCTTGGTTCTCACT 59.326 57.895 0.00 0.00 0.00 3.41
431 432 5.018539 CAACGGATTGGATTCCTACTACA 57.981 43.478 3.95 0.00 33.30 2.74
432 433 4.939052 ACGGATTGGATTCCTACTACAG 57.061 45.455 3.95 0.00 33.30 2.74
469 470 9.965902 GTCCATATAAATTATGACCAGGATCTT 57.034 33.333 0.00 0.00 0.00 2.40
568 569 2.108952 AGTTTGTGAGGGCCATTCTCTT 59.891 45.455 6.18 0.00 32.78 2.85
576 577 6.169800 GTGAGGGCCATTCTCTTTCTATATC 58.830 44.000 6.18 0.00 32.78 1.63
625 626 1.453155 ATTCTTGGGCAACTGCGTAG 58.547 50.000 0.00 0.00 43.26 3.51
809 4138 3.791545 TGATAAGAGGGGTTTGGGCTTAT 59.208 43.478 0.00 0.00 35.22 1.73
811 4140 3.560357 AAGAGGGGTTTGGGCTTATTT 57.440 42.857 0.00 0.00 0.00 1.40
812 4141 2.820178 AGAGGGGTTTGGGCTTATTTG 58.180 47.619 0.00 0.00 0.00 2.32
814 4143 3.335484 AGAGGGGTTTGGGCTTATTTGTA 59.665 43.478 0.00 0.00 0.00 2.41
821 4151 8.706521 GGGGTTTGGGCTTATTTGTATTTATTA 58.293 33.333 0.00 0.00 0.00 0.98
862 4194 3.865684 GCCCAATGTCACAAAAATCCTGG 60.866 47.826 0.00 0.00 0.00 4.45
1111 4444 2.104331 CCGCCGTGCTTCGACTAT 59.896 61.111 3.69 0.00 42.86 2.12
1415 4754 3.267900 CCGACCGGTCACATATCAC 57.732 57.895 32.80 4.66 0.00 3.06
1429 4768 2.933495 TATCACCACCGTTTCTCTCG 57.067 50.000 0.00 0.00 0.00 4.04
1594 4936 1.392589 CATCAACCTGGGTATGTGCC 58.607 55.000 0.00 0.00 0.00 5.01
1599 4941 1.077501 CCTGGGTATGTGCCACCTG 60.078 63.158 0.00 0.00 36.25 4.00
1602 4944 0.546507 TGGGTATGTGCCACCTGAGA 60.547 55.000 0.00 0.00 36.25 3.27
1636 4978 1.469703 TGGAACGCTGCTGATTTCATG 59.530 47.619 0.00 0.00 0.00 3.07
1645 4987 2.429250 TGCTGATTTCATGGCCATCTTG 59.571 45.455 17.61 6.92 0.00 3.02
1654 4996 1.002624 GGCCATCTTGTTGGGACGA 60.003 57.895 0.00 0.00 37.24 4.20
1768 5110 4.706842 AGGTACTCTGTTTGGTCATGTT 57.293 40.909 0.00 0.00 0.00 2.71
1770 5112 6.182507 AGGTACTCTGTTTGGTCATGTTAA 57.817 37.500 0.00 0.00 0.00 2.01
1801 5143 5.523916 ACATATTGTTATGGAACGACTCAGC 59.476 40.000 0.00 0.00 39.69 4.26
1813 5155 1.135859 CGACTCAGCACCTCAAATTGC 60.136 52.381 0.00 0.00 39.16 3.56
1824 5168 7.650834 GCACCTCAAATTGCTTTGTTATTAA 57.349 32.000 0.00 0.00 42.02 1.40
1825 5169 8.255394 GCACCTCAAATTGCTTTGTTATTAAT 57.745 30.769 0.00 0.00 42.02 1.40
1826 5170 8.170553 GCACCTCAAATTGCTTTGTTATTAATG 58.829 33.333 0.00 0.00 42.02 1.90
1827 5171 9.206870 CACCTCAAATTGCTTTGTTATTAATGT 57.793 29.630 0.00 0.00 42.02 2.71
1940 5284 2.679837 CTGTATGTGGACATCTGCAACC 59.320 50.000 0.00 0.00 37.76 3.77
1972 5661 6.648310 GCTGATCATATGCTAGTTACATGTGT 59.352 38.462 9.11 0.00 37.73 3.72
1973 5662 7.359849 GCTGATCATATGCTAGTTACATGTGTG 60.360 40.741 9.11 0.00 37.73 3.82
1974 5663 7.500141 TGATCATATGCTAGTTACATGTGTGT 58.500 34.615 9.11 0.00 42.39 3.72
1993 5684 3.058708 GTGTTCACTGATGGTGTCACATG 60.059 47.826 5.12 0.00 45.50 3.21
2298 5992 3.244009 GCAGCTCATATCCTTCACTGCTA 60.244 47.826 0.00 0.00 44.25 3.49
2308 6002 0.528017 TTCACTGCTACAGCCTCTCG 59.472 55.000 0.00 0.00 41.18 4.04
2365 6059 5.009510 TCCGCAACTTTCATCTGAAAATTCA 59.990 36.000 6.79 0.00 42.72 2.57
2366 6060 5.865552 CCGCAACTTTCATCTGAAAATTCAT 59.134 36.000 6.79 0.00 42.72 2.57
2368 6062 7.219535 CCGCAACTTTCATCTGAAAATTCATAG 59.780 37.037 6.79 0.00 42.72 2.23
2369 6063 7.964559 CGCAACTTTCATCTGAAAATTCATAGA 59.035 33.333 6.79 0.00 42.72 1.98
2404 6112 5.651139 ACAAATCAGCATTGTCTATGAAGCT 59.349 36.000 0.00 0.00 36.28 3.74
2415 6123 9.107177 CATTGTCTATGAAGCTTGAACTAGATT 57.893 33.333 2.10 0.00 36.26 2.40
2660 6369 0.539901 ATACGGTGATAGGGCTCGCT 60.540 55.000 0.00 0.00 0.00 4.93
2687 6396 1.783284 CTCTGTACGAACTGCTGCAA 58.217 50.000 3.02 0.00 0.00 4.08
2749 6458 5.689383 TTTACTGGCAAAGACTGACATTC 57.311 39.130 0.00 0.00 44.22 2.67
2815 6527 6.474140 TGTAAAGTCAAGTGAAGTACTCCA 57.526 37.500 0.00 0.00 39.18 3.86
2827 6539 9.654663 AAGTGAAGTACTCCATATGTAAACTTC 57.345 33.333 19.98 19.98 39.18 3.01
2909 6621 7.013274 TCAGTCCTCAGTTTCGAATTTGAAATT 59.987 33.333 21.07 15.42 39.80 1.82
2959 6671 1.381851 CCCCAGCTTCTTCCTTGCT 59.618 57.895 0.00 0.00 37.56 3.91
3011 6723 4.492160 TCGCCGCGCCAACTAGAG 62.492 66.667 8.21 0.00 0.00 2.43
3013 6725 2.493030 GCCGCGCCAACTAGAGTA 59.507 61.111 0.00 0.00 0.00 2.59
3110 6822 1.137019 CGTTTCATTTTCGGCGTTTGC 60.137 47.619 6.85 0.00 41.71 3.68
3111 6823 1.855360 GTTTCATTTTCGGCGTTTGCA 59.145 42.857 6.85 0.00 45.35 4.08
3112 6824 1.764851 TTCATTTTCGGCGTTTGCAG 58.235 45.000 6.85 0.00 45.35 4.41
3113 6825 0.662970 TCATTTTCGGCGTTTGCAGC 60.663 50.000 6.85 0.00 45.35 5.25
3121 6833 3.579066 GCGTTTGCAGCCCTAAAAA 57.421 47.368 0.00 0.00 42.15 1.94
3208 6920 1.067635 CAAACAGAAGCCCATTTCCCG 60.068 52.381 0.00 0.00 0.00 5.14
3267 6980 5.626578 CGAATTAACCAGGCCATTCCAAATT 60.627 40.000 5.01 3.53 37.29 1.82
3306 7020 1.995376 ATGGGAAGAACTGGCGTTTT 58.005 45.000 0.00 0.00 32.39 2.43
3353 7067 6.611236 TGTCAGGACTATGTTAAGATGATGGA 59.389 38.462 0.65 0.00 0.00 3.41
3377 7091 1.776667 TCTATGGGCAATCTGGAAGGG 59.223 52.381 0.00 0.00 0.00 3.95
3567 7285 0.537188 AATGTCGATGGAGCTCCGTT 59.463 50.000 28.18 18.00 39.43 4.44
3572 7290 0.673644 CGATGGAGCTCCGTTGGTTT 60.674 55.000 28.69 8.78 39.43 3.27
3609 7327 1.542544 GCTGCTGCTATTTTTCGCTG 58.457 50.000 8.53 0.00 36.03 5.18
3619 7337 4.201861 GCTATTTTTCGCTGAGAAGAAGGG 60.202 45.833 3.77 1.03 40.40 3.95
3621 7339 0.396435 TTTCGCTGAGAAGAAGGGCA 59.604 50.000 0.00 0.00 40.40 5.36
3643 7361 3.706086 AGTTTTTGGGTGCATCAGTTCTT 59.294 39.130 0.00 0.00 0.00 2.52
3651 7369 0.108945 GCATCAGTTCTTGCCTTGGC 60.109 55.000 4.43 4.43 32.66 4.52
3653 7371 2.715046 CATCAGTTCTTGCCTTGGCTA 58.285 47.619 13.18 4.37 0.00 3.93
3677 7395 2.821991 GATGGAACCATCTACTCCCG 57.178 55.000 22.07 0.00 46.67 5.14
3678 7396 2.317040 GATGGAACCATCTACTCCCGA 58.683 52.381 22.07 0.00 46.67 5.14
3679 7397 1.481871 TGGAACCATCTACTCCCGAC 58.518 55.000 0.00 0.00 0.00 4.79
3680 7398 0.384669 GGAACCATCTACTCCCGACG 59.615 60.000 0.00 0.00 0.00 5.12
3681 7399 1.101331 GAACCATCTACTCCCGACGT 58.899 55.000 0.00 0.00 0.00 4.34
3682 7400 2.292267 GAACCATCTACTCCCGACGTA 58.708 52.381 0.00 0.00 0.00 3.57
3683 7401 1.964552 ACCATCTACTCCCGACGTAG 58.035 55.000 0.00 0.00 36.53 3.51
3699 7417 4.698583 ACGTAGTGATCTAAACGCTCTT 57.301 40.909 12.20 0.00 42.51 2.85
3700 7418 5.808042 ACGTAGTGATCTAAACGCTCTTA 57.192 39.130 12.20 0.00 42.51 2.10
3701 7419 6.374565 ACGTAGTGATCTAAACGCTCTTAT 57.625 37.500 12.20 0.00 42.51 1.73
3702 7420 7.488187 ACGTAGTGATCTAAACGCTCTTATA 57.512 36.000 12.20 0.00 42.51 0.98
3703 7421 8.097078 ACGTAGTGATCTAAACGCTCTTATAT 57.903 34.615 12.20 0.00 42.51 0.86
3704 7422 8.566260 ACGTAGTGATCTAAACGCTCTTATATT 58.434 33.333 12.20 0.00 42.51 1.28
3705 7423 9.395707 CGTAGTGATCTAAACGCTCTTATATTT 57.604 33.333 0.00 0.00 0.00 1.40
3711 7429 9.587461 GATCTAAACGCTCTTATATTTCTTTGC 57.413 33.333 0.00 0.00 0.00 3.68
3712 7430 8.487313 TCTAAACGCTCTTATATTTCTTTGCA 57.513 30.769 0.00 0.00 0.00 4.08
3713 7431 8.604035 TCTAAACGCTCTTATATTTCTTTGCAG 58.396 33.333 0.00 0.00 0.00 4.41
3714 7432 6.985188 AACGCTCTTATATTTCTTTGCAGA 57.015 33.333 0.00 0.00 0.00 4.26
3715 7433 6.595772 ACGCTCTTATATTTCTTTGCAGAG 57.404 37.500 0.00 0.00 0.00 3.35
3716 7434 5.525378 ACGCTCTTATATTTCTTTGCAGAGG 59.475 40.000 4.15 0.00 0.00 3.69
3717 7435 5.755375 CGCTCTTATATTTCTTTGCAGAGGA 59.245 40.000 4.15 0.00 0.00 3.71
3718 7436 6.258727 CGCTCTTATATTTCTTTGCAGAGGAA 59.741 38.462 0.00 0.00 0.00 3.36
3719 7437 7.518052 CGCTCTTATATTTCTTTGCAGAGGAAG 60.518 40.741 4.07 0.00 0.00 3.46
3731 7449 6.360370 TTGCAGAGGAAGTACTATTGAAGT 57.640 37.500 0.00 0.00 42.62 3.01
3777 7495 3.861689 GCTTGGCTAAAGATGCATGTTTC 59.138 43.478 23.60 11.52 38.24 2.78
3782 7500 6.465948 TGGCTAAAGATGCATGTTTCAATTT 58.534 32.000 23.60 3.41 0.00 1.82
3816 7534 4.315803 CTTCGGATTGTTCTGGTGTAGTT 58.684 43.478 0.00 0.00 0.00 2.24
3817 7535 3.921677 TCGGATTGTTCTGGTGTAGTTC 58.078 45.455 0.00 0.00 0.00 3.01
3818 7536 2.666508 CGGATTGTTCTGGTGTAGTTCG 59.333 50.000 0.00 0.00 0.00 3.95
3823 7541 2.101750 TGTTCTGGTGTAGTTCGAAGCA 59.898 45.455 0.00 0.00 0.00 3.91
3825 7543 3.678056 TCTGGTGTAGTTCGAAGCATT 57.322 42.857 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.884636 ACTTTAGTGGTTTAAAAATTTCAAGCT 57.115 25.926 0.00 0.00 0.00 3.74
37 38 9.303537 CCGACTTTAGTGGTTTAAAAATTTCAA 57.696 29.630 0.00 0.00 0.00 2.69
38 39 8.468399 ACCGACTTTAGTGGTTTAAAAATTTCA 58.532 29.630 0.00 0.00 29.87 2.69
39 40 8.861033 ACCGACTTTAGTGGTTTAAAAATTTC 57.139 30.769 0.00 0.00 29.87 2.17
40 41 9.089601 CAACCGACTTTAGTGGTTTAAAAATTT 57.910 29.630 11.52 0.00 43.23 1.82
41 42 7.223193 GCAACCGACTTTAGTGGTTTAAAAATT 59.777 33.333 11.52 0.00 43.23 1.82
42 43 6.698329 GCAACCGACTTTAGTGGTTTAAAAAT 59.302 34.615 11.52 0.00 43.23 1.82
43 44 6.035217 GCAACCGACTTTAGTGGTTTAAAAA 58.965 36.000 11.52 0.00 43.23 1.94
44 45 5.357596 AGCAACCGACTTTAGTGGTTTAAAA 59.642 36.000 11.52 0.00 43.23 1.52
45 46 4.883006 AGCAACCGACTTTAGTGGTTTAAA 59.117 37.500 11.52 0.00 43.23 1.52
46 47 4.453751 AGCAACCGACTTTAGTGGTTTAA 58.546 39.130 11.52 0.00 43.23 1.52
47 48 4.075963 AGCAACCGACTTTAGTGGTTTA 57.924 40.909 11.52 0.00 43.23 2.01
48 49 2.927028 AGCAACCGACTTTAGTGGTTT 58.073 42.857 11.52 0.00 43.23 3.27
49 50 2.632987 AGCAACCGACTTTAGTGGTT 57.367 45.000 9.49 9.49 46.57 3.67
50 51 2.895404 TCTAGCAACCGACTTTAGTGGT 59.105 45.455 0.00 0.00 37.68 4.16
51 52 3.512680 CTCTAGCAACCGACTTTAGTGG 58.487 50.000 0.00 0.00 0.00 4.00
52 53 3.192844 TCCTCTAGCAACCGACTTTAGTG 59.807 47.826 0.00 0.00 0.00 2.74
53 54 3.193056 GTCCTCTAGCAACCGACTTTAGT 59.807 47.826 0.00 0.00 0.00 2.24
54 55 3.192844 TGTCCTCTAGCAACCGACTTTAG 59.807 47.826 0.00 0.00 0.00 1.85
55 56 3.057033 GTGTCCTCTAGCAACCGACTTTA 60.057 47.826 0.00 0.00 0.00 1.85
56 57 1.968493 TGTCCTCTAGCAACCGACTTT 59.032 47.619 0.00 0.00 0.00 2.66
57 58 1.272769 GTGTCCTCTAGCAACCGACTT 59.727 52.381 0.00 0.00 0.00 3.01
58 59 0.889306 GTGTCCTCTAGCAACCGACT 59.111 55.000 0.00 0.00 0.00 4.18
59 60 0.889306 AGTGTCCTCTAGCAACCGAC 59.111 55.000 0.00 0.00 0.00 4.79
60 61 0.888619 CAGTGTCCTCTAGCAACCGA 59.111 55.000 0.00 0.00 0.00 4.69
61 62 0.108615 CCAGTGTCCTCTAGCAACCG 60.109 60.000 0.00 0.00 0.00 4.44
62 63 1.066787 GTCCAGTGTCCTCTAGCAACC 60.067 57.143 0.00 0.00 0.00 3.77
63 64 1.618837 TGTCCAGTGTCCTCTAGCAAC 59.381 52.381 0.00 0.00 0.00 4.17
64 65 2.009681 TGTCCAGTGTCCTCTAGCAA 57.990 50.000 0.00 0.00 0.00 3.91
65 66 2.238084 ATGTCCAGTGTCCTCTAGCA 57.762 50.000 0.00 0.00 0.00 3.49
66 67 3.024547 TGTATGTCCAGTGTCCTCTAGC 58.975 50.000 0.00 0.00 0.00 3.42
67 68 5.655488 CTTTGTATGTCCAGTGTCCTCTAG 58.345 45.833 0.00 0.00 0.00 2.43
68 69 4.081642 GCTTTGTATGTCCAGTGTCCTCTA 60.082 45.833 0.00 0.00 0.00 2.43
69 70 3.307059 GCTTTGTATGTCCAGTGTCCTCT 60.307 47.826 0.00 0.00 0.00 3.69
70 71 3.003480 GCTTTGTATGTCCAGTGTCCTC 58.997 50.000 0.00 0.00 0.00 3.71
71 72 2.290323 GGCTTTGTATGTCCAGTGTCCT 60.290 50.000 0.00 0.00 0.00 3.85
72 73 2.084546 GGCTTTGTATGTCCAGTGTCC 58.915 52.381 0.00 0.00 0.00 4.02
73 74 2.084546 GGGCTTTGTATGTCCAGTGTC 58.915 52.381 0.00 0.00 0.00 3.67
74 75 1.610624 CGGGCTTTGTATGTCCAGTGT 60.611 52.381 0.00 0.00 0.00 3.55
75 76 1.086696 CGGGCTTTGTATGTCCAGTG 58.913 55.000 0.00 0.00 0.00 3.66
76 77 0.690762 ACGGGCTTTGTATGTCCAGT 59.309 50.000 0.00 0.00 0.00 4.00
77 78 1.066143 AGACGGGCTTTGTATGTCCAG 60.066 52.381 0.00 0.00 0.00 3.86
78 79 0.981183 AGACGGGCTTTGTATGTCCA 59.019 50.000 0.00 0.00 0.00 4.02
79 80 1.369625 CAGACGGGCTTTGTATGTCC 58.630 55.000 0.00 0.00 0.00 4.02
80 81 0.727398 GCAGACGGGCTTTGTATGTC 59.273 55.000 0.00 0.00 31.42 3.06
81 82 0.324943 AGCAGACGGGCTTTGTATGT 59.675 50.000 0.00 0.00 42.71 2.29
82 83 1.933853 GTAGCAGACGGGCTTTGTATG 59.066 52.381 3.85 0.00 42.71 2.39
83 84 1.831736 AGTAGCAGACGGGCTTTGTAT 59.168 47.619 3.85 0.00 42.71 2.29
84 85 1.067142 CAGTAGCAGACGGGCTTTGTA 60.067 52.381 3.85 0.00 42.71 2.41
85 86 0.320771 CAGTAGCAGACGGGCTTTGT 60.321 55.000 3.85 0.00 42.71 2.83
86 87 0.320771 ACAGTAGCAGACGGGCTTTG 60.321 55.000 3.85 6.32 42.71 2.77
87 88 1.204941 CTACAGTAGCAGACGGGCTTT 59.795 52.381 3.85 0.00 42.71 3.51
88 89 0.818296 CTACAGTAGCAGACGGGCTT 59.182 55.000 3.85 0.00 42.71 4.35
99 100 3.546724 TGCAGAGAGTAGGCTACAGTAG 58.453 50.000 25.48 12.37 0.00 2.57
100 101 3.054287 ACTGCAGAGAGTAGGCTACAGTA 60.054 47.826 25.48 8.98 35.49 2.74
101 102 2.291282 ACTGCAGAGAGTAGGCTACAGT 60.291 50.000 25.48 15.15 33.78 3.55
102 103 2.098934 CACTGCAGAGAGTAGGCTACAG 59.901 54.545 25.48 14.54 33.78 2.74
103 104 2.095461 CACTGCAGAGAGTAGGCTACA 58.905 52.381 25.48 3.15 33.78 2.74
104 105 2.098443 GTCACTGCAGAGAGTAGGCTAC 59.902 54.545 23.35 16.93 33.78 3.58
105 106 2.370349 GTCACTGCAGAGAGTAGGCTA 58.630 52.381 23.35 0.00 33.78 3.93
106 107 1.181786 GTCACTGCAGAGAGTAGGCT 58.818 55.000 23.35 0.00 33.78 4.58
107 108 0.174617 GGTCACTGCAGAGAGTAGGC 59.825 60.000 23.35 5.41 33.78 3.93
108 109 1.476085 CAGGTCACTGCAGAGAGTAGG 59.524 57.143 23.35 4.26 38.01 3.18
109 110 1.476085 CCAGGTCACTGCAGAGAGTAG 59.524 57.143 23.35 9.92 43.53 2.57
110 111 1.550327 CCAGGTCACTGCAGAGAGTA 58.450 55.000 23.35 0.00 43.53 2.59
111 112 1.825281 GCCAGGTCACTGCAGAGAGT 61.825 60.000 23.35 5.36 43.53 3.24
112 113 1.079266 GCCAGGTCACTGCAGAGAG 60.079 63.158 23.35 9.98 43.53 3.20
113 114 0.251787 TAGCCAGGTCACTGCAGAGA 60.252 55.000 23.35 16.37 43.53 3.10
114 115 0.175302 CTAGCCAGGTCACTGCAGAG 59.825 60.000 23.35 13.75 43.53 3.35
115 116 1.892819 GCTAGCCAGGTCACTGCAGA 61.893 60.000 23.35 0.00 43.53 4.26
116 117 1.449246 GCTAGCCAGGTCACTGCAG 60.449 63.158 13.48 13.48 43.53 4.41
117 118 0.614697 TAGCTAGCCAGGTCACTGCA 60.615 55.000 12.13 0.00 43.53 4.41
118 119 0.179097 GTAGCTAGCCAGGTCACTGC 60.179 60.000 12.13 0.00 43.53 4.40
119 120 1.135915 CTGTAGCTAGCCAGGTCACTG 59.864 57.143 12.13 1.01 44.51 3.66
120 121 1.272760 ACTGTAGCTAGCCAGGTCACT 60.273 52.381 20.69 0.62 33.61 3.41
121 122 1.134965 CACTGTAGCTAGCCAGGTCAC 60.135 57.143 20.69 7.74 33.61 3.67
122 123 1.186200 CACTGTAGCTAGCCAGGTCA 58.814 55.000 20.69 9.40 33.61 4.02
123 124 0.179097 GCACTGTAGCTAGCCAGGTC 60.179 60.000 20.69 10.76 33.61 3.85
124 125 0.904865 TGCACTGTAGCTAGCCAGGT 60.905 55.000 20.69 9.43 36.25 4.00
125 126 0.467384 ATGCACTGTAGCTAGCCAGG 59.533 55.000 20.69 12.74 32.90 4.45
126 127 1.863267 GATGCACTGTAGCTAGCCAG 58.137 55.000 12.13 14.89 34.99 4.85
127 128 0.103026 CGATGCACTGTAGCTAGCCA 59.897 55.000 12.13 1.86 34.99 4.75
128 129 1.218230 GCGATGCACTGTAGCTAGCC 61.218 60.000 12.13 0.00 34.99 3.93
129 130 0.249238 AGCGATGCACTGTAGCTAGC 60.249 55.000 6.62 6.62 36.28 3.42
130 131 1.857217 CAAGCGATGCACTGTAGCTAG 59.143 52.381 0.00 0.00 37.15 3.42
131 132 1.926561 CAAGCGATGCACTGTAGCTA 58.073 50.000 0.00 0.00 37.15 3.32
132 133 2.759783 CAAGCGATGCACTGTAGCT 58.240 52.632 0.00 0.00 40.20 3.32
142 143 0.319900 AGCCCGTATAGCAAGCGATG 60.320 55.000 0.00 0.00 0.00 3.84
143 144 0.319900 CAGCCCGTATAGCAAGCGAT 60.320 55.000 0.00 0.00 0.00 4.58
144 145 1.067416 CAGCCCGTATAGCAAGCGA 59.933 57.895 0.00 0.00 0.00 4.93
145 146 1.956170 CCAGCCCGTATAGCAAGCG 60.956 63.158 0.00 0.00 0.00 4.68
146 147 2.254464 GCCAGCCCGTATAGCAAGC 61.254 63.158 0.00 0.00 0.00 4.01
147 148 1.598130 GGCCAGCCCGTATAGCAAG 60.598 63.158 0.00 0.00 0.00 4.01
148 149 2.508928 GGCCAGCCCGTATAGCAA 59.491 61.111 0.00 0.00 0.00 3.91
180 181 2.815211 TCGAGCAATCGCACAGGC 60.815 61.111 0.00 0.00 42.27 4.85
181 182 1.446792 AGTCGAGCAATCGCACAGG 60.447 57.895 0.00 0.00 42.27 4.00
182 183 1.010935 ACAGTCGAGCAATCGCACAG 61.011 55.000 0.00 0.00 42.27 3.66
183 184 0.599991 AACAGTCGAGCAATCGCACA 60.600 50.000 0.00 0.00 42.27 4.57
184 185 0.179240 CAACAGTCGAGCAATCGCAC 60.179 55.000 0.00 0.00 42.27 5.34
185 186 0.319469 TCAACAGTCGAGCAATCGCA 60.319 50.000 0.00 0.00 42.27 5.10
186 187 0.093705 GTCAACAGTCGAGCAATCGC 59.906 55.000 0.00 0.00 38.99 4.58
187 188 0.363512 CGTCAACAGTCGAGCAATCG 59.636 55.000 0.00 0.00 0.00 3.34
188 189 0.093705 GCGTCAACAGTCGAGCAATC 59.906 55.000 0.00 0.00 0.00 2.67
189 190 0.599991 TGCGTCAACAGTCGAGCAAT 60.600 50.000 0.00 0.00 0.00 3.56
190 191 1.215014 CTGCGTCAACAGTCGAGCAA 61.215 55.000 0.00 0.00 34.04 3.91
191 192 1.661509 CTGCGTCAACAGTCGAGCA 60.662 57.895 0.00 0.00 32.78 4.26
192 193 3.004734 GCTGCGTCAACAGTCGAGC 62.005 63.158 0.00 0.00 39.96 5.03
193 194 1.215014 TTGCTGCGTCAACAGTCGAG 61.215 55.000 0.00 0.00 39.96 4.04
194 195 1.215014 CTTGCTGCGTCAACAGTCGA 61.215 55.000 0.00 0.00 39.96 4.20
195 196 1.202568 CTTGCTGCGTCAACAGTCG 59.797 57.895 0.00 0.00 39.96 4.18
196 197 1.082496 GCTTGCTGCGTCAACAGTC 60.082 57.895 0.00 0.00 39.96 3.51
197 198 3.025619 GCTTGCTGCGTCAACAGT 58.974 55.556 0.00 0.00 39.96 3.55
206 207 2.171940 CTGTTCGACGCTTGCTGC 59.828 61.111 0.00 0.00 38.57 5.25
207 208 1.621301 CTCCTGTTCGACGCTTGCTG 61.621 60.000 0.00 0.00 0.00 4.41
208 209 1.373497 CTCCTGTTCGACGCTTGCT 60.373 57.895 0.00 0.00 0.00 3.91
209 210 3.016474 GCTCCTGTTCGACGCTTGC 62.016 63.158 0.00 0.00 0.00 4.01
210 211 1.347817 GAGCTCCTGTTCGACGCTTG 61.348 60.000 0.87 0.00 0.00 4.01
211 212 1.080434 GAGCTCCTGTTCGACGCTT 60.080 57.895 0.87 0.00 0.00 4.68
212 213 2.569134 GAGCTCCTGTTCGACGCT 59.431 61.111 0.87 0.00 0.00 5.07
213 214 2.507324 GGAGCTCCTGTTCGACGC 60.507 66.667 26.25 0.00 0.00 5.19
214 215 2.182030 GGGAGCTCCTGTTCGACG 59.818 66.667 31.36 0.00 35.95 5.12
215 216 1.950973 GAGGGGAGCTCCTGTTCGAC 61.951 65.000 31.36 13.25 37.25 4.20
216 217 1.682684 GAGGGGAGCTCCTGTTCGA 60.683 63.158 31.36 0.00 37.25 3.71
217 218 2.726351 GGAGGGGAGCTCCTGTTCG 61.726 68.421 31.36 0.00 37.25 3.95
218 219 3.314951 GGAGGGGAGCTCCTGTTC 58.685 66.667 31.36 23.46 37.25 3.18
223 224 0.032017 TTGTAGAGGAGGGGAGCTCC 60.032 60.000 25.59 25.59 41.15 4.70
224 225 1.116308 GTTGTAGAGGAGGGGAGCTC 58.884 60.000 4.71 4.71 0.00 4.09
225 226 0.684805 CGTTGTAGAGGAGGGGAGCT 60.685 60.000 0.00 0.00 0.00 4.09
226 227 1.817209 CGTTGTAGAGGAGGGGAGC 59.183 63.158 0.00 0.00 0.00 4.70
227 228 1.677637 GGCGTTGTAGAGGAGGGGAG 61.678 65.000 0.00 0.00 0.00 4.30
228 229 1.684734 GGCGTTGTAGAGGAGGGGA 60.685 63.158 0.00 0.00 0.00 4.81
229 230 1.265454 AAGGCGTTGTAGAGGAGGGG 61.265 60.000 0.00 0.00 0.00 4.79
230 231 1.481871 TAAGGCGTTGTAGAGGAGGG 58.518 55.000 0.97 0.00 0.00 4.30
246 247 1.607628 GCTTCCCTGATGCAGCATAAG 59.392 52.381 12.58 12.58 33.71 1.73
250 251 2.758434 TGCTTCCCTGATGCAGCA 59.242 55.556 3.82 3.82 37.70 4.41
260 261 3.731653 GAGCGCCTCTCTGCTTCCC 62.732 68.421 2.29 0.00 42.60 3.97
319 320 1.375523 GTTCTGGCGACCAACCGAT 60.376 57.895 0.00 0.00 30.80 4.18
320 321 2.029964 GTTCTGGCGACCAACCGA 59.970 61.111 0.00 0.00 30.80 4.69
322 323 0.818040 ACAAGTTCTGGCGACCAACC 60.818 55.000 0.00 0.00 30.80 3.77
324 325 0.468226 AGACAAGTTCTGGCGACCAA 59.532 50.000 0.00 0.00 38.56 3.67
326 327 1.149148 GAAGACAAGTTCTGGCGACC 58.851 55.000 0.00 0.00 38.56 4.79
327 328 1.149148 GGAAGACAAGTTCTGGCGAC 58.851 55.000 0.00 0.00 38.56 5.19
328 329 1.000955 GAGGAAGACAAGTTCTGGCGA 59.999 52.381 0.00 0.00 38.56 5.54
329 330 1.001406 AGAGGAAGACAAGTTCTGGCG 59.999 52.381 0.00 0.00 38.56 5.69
330 331 2.614229 GGAGAGGAAGACAAGTTCTGGC 60.614 54.545 0.00 0.00 33.46 4.85
331 332 2.027653 GGGAGAGGAAGACAAGTTCTGG 60.028 54.545 0.00 0.00 33.46 3.86
332 333 2.027653 GGGGAGAGGAAGACAAGTTCTG 60.028 54.545 0.00 0.00 33.46 3.02
333 334 2.158081 AGGGGAGAGGAAGACAAGTTCT 60.158 50.000 0.00 0.00 35.32 3.01
334 335 2.235155 GAGGGGAGAGGAAGACAAGTTC 59.765 54.545 0.00 0.00 0.00 3.01
335 336 2.261729 GAGGGGAGAGGAAGACAAGTT 58.738 52.381 0.00 0.00 0.00 2.66
336 337 1.893210 CGAGGGGAGAGGAAGACAAGT 60.893 57.143 0.00 0.00 0.00 3.16
337 338 0.820871 CGAGGGGAGAGGAAGACAAG 59.179 60.000 0.00 0.00 0.00 3.16
338 339 1.258445 GCGAGGGGAGAGGAAGACAA 61.258 60.000 0.00 0.00 0.00 3.18
339 340 1.682684 GCGAGGGGAGAGGAAGACA 60.683 63.158 0.00 0.00 0.00 3.41
340 341 0.973496 AAGCGAGGGGAGAGGAAGAC 60.973 60.000 0.00 0.00 0.00 3.01
341 342 0.972983 CAAGCGAGGGGAGAGGAAGA 60.973 60.000 0.00 0.00 0.00 2.87
342 343 1.519719 CAAGCGAGGGGAGAGGAAG 59.480 63.158 0.00 0.00 0.00 3.46
343 344 1.990060 CCAAGCGAGGGGAGAGGAA 60.990 63.158 0.00 0.00 0.00 3.36
344 345 2.364317 CCAAGCGAGGGGAGAGGA 60.364 66.667 0.00 0.00 0.00 3.71
345 346 2.245438 GAACCAAGCGAGGGGAGAGG 62.245 65.000 2.52 0.00 0.00 3.69
346 347 1.219393 GAACCAAGCGAGGGGAGAG 59.781 63.158 2.52 0.00 0.00 3.20
347 348 1.229209 AGAACCAAGCGAGGGGAGA 60.229 57.895 2.52 0.00 0.00 3.71
348 349 1.219393 GAGAACCAAGCGAGGGGAG 59.781 63.158 2.52 0.00 0.00 4.30
349 350 1.535444 TGAGAACCAAGCGAGGGGA 60.535 57.895 2.52 0.00 0.00 4.81
356 357 2.421619 CCTGAGAAGTGAGAACCAAGC 58.578 52.381 0.00 0.00 0.00 4.01
363 364 1.202891 TGTCGACCCTGAGAAGTGAGA 60.203 52.381 14.12 0.00 0.00 3.27
364 365 1.248486 TGTCGACCCTGAGAAGTGAG 58.752 55.000 14.12 0.00 0.00 3.51
365 366 1.340248 GTTGTCGACCCTGAGAAGTGA 59.660 52.381 14.12 0.00 0.00 3.41
366 367 1.341531 AGTTGTCGACCCTGAGAAGTG 59.658 52.381 14.12 0.00 0.00 3.16
367 368 1.614413 GAGTTGTCGACCCTGAGAAGT 59.386 52.381 14.12 1.88 0.00 3.01
368 369 2.355717 GAGTTGTCGACCCTGAGAAG 57.644 55.000 14.12 0.00 0.00 2.85
410 411 4.715297 ACTGTAGTAGGAATCCAATCCGTT 59.285 41.667 0.61 0.00 44.60 4.44
411 412 4.287552 ACTGTAGTAGGAATCCAATCCGT 58.712 43.478 0.61 0.00 44.60 4.69
446 447 8.393366 CGCAAGATCCTGGTCATAATTTATATG 58.607 37.037 0.00 0.00 43.02 1.78
450 451 5.924356 TCGCAAGATCCTGGTCATAATTTA 58.076 37.500 0.00 0.00 45.01 1.40
489 490 5.385509 TGAAGTCATAGTGTCATCGTTGA 57.614 39.130 0.00 0.00 0.00 3.18
536 537 5.652452 GGCCCTCACAAACTGAAAATACTAT 59.348 40.000 0.00 0.00 0.00 2.12
537 538 5.007682 GGCCCTCACAAACTGAAAATACTA 58.992 41.667 0.00 0.00 0.00 1.82
538 539 3.826729 GGCCCTCACAAACTGAAAATACT 59.173 43.478 0.00 0.00 0.00 2.12
593 594 8.664079 AGTTGCCCAAGAATTCACTATATATCT 58.336 33.333 8.44 0.00 0.00 1.98
594 595 8.725148 CAGTTGCCCAAGAATTCACTATATATC 58.275 37.037 8.44 0.00 0.00 1.63
784 4113 3.169908 GCCCAAACCCCTCTTATCAAAA 58.830 45.455 0.00 0.00 0.00 2.44
792 4121 2.111792 ACAAATAAGCCCAAACCCCTCT 59.888 45.455 0.00 0.00 0.00 3.69
811 4140 6.540914 GCACTAGGCCAGTTGTAATAAATACA 59.459 38.462 5.01 0.00 37.52 2.29
812 4141 6.540914 TGCACTAGGCCAGTTGTAATAAATAC 59.459 38.462 5.01 0.00 43.89 1.89
814 4143 5.505780 TGCACTAGGCCAGTTGTAATAAAT 58.494 37.500 5.01 0.00 43.89 1.40
821 4151 1.376466 CCTGCACTAGGCCAGTTGT 59.624 57.895 5.01 0.00 43.89 3.32
862 4194 5.517054 GGATGCCGATCGTATAGATTTTCTC 59.483 44.000 15.09 0.00 40.26 2.87
1384 4717 4.530857 GTCGGTCGGGATGCTGGG 62.531 72.222 0.00 0.00 0.00 4.45
1415 4754 0.039798 TTCGACGAGAGAAACGGTGG 60.040 55.000 0.00 0.00 34.93 4.61
1429 4768 1.696832 GGCACCGCTCAGATTTCGAC 61.697 60.000 0.00 0.00 0.00 4.20
1594 4936 3.319137 TTGTTCGAGGAATCTCAGGTG 57.681 47.619 0.00 0.00 39.95 4.00
1599 4941 4.201724 CGTTCCATTTGTTCGAGGAATCTC 60.202 45.833 5.02 0.00 41.71 2.75
1602 4944 2.161609 GCGTTCCATTTGTTCGAGGAAT 59.838 45.455 5.02 0.00 41.71 3.01
1636 4978 0.394352 ATCGTCCCAACAAGATGGCC 60.394 55.000 0.00 0.00 39.26 5.36
1645 4987 2.040544 CCACCTGCATCGTCCCAAC 61.041 63.158 0.00 0.00 0.00 3.77
1654 4996 1.002868 GCACTCTGTCCACCTGCAT 60.003 57.895 0.00 0.00 0.00 3.96
1770 5112 8.612619 GTCGTTCCATAACAATATGTGAAAGAT 58.387 33.333 13.12 0.00 38.21 2.40
1801 5143 9.206870 ACATTAATAACAAAGCAATTTGAGGTG 57.793 29.630 7.66 0.00 35.93 4.00
1824 5168 7.173218 CGGAACTGCAGGAACATTATATTACAT 59.827 37.037 19.93 0.00 0.00 2.29
1825 5169 6.481976 CGGAACTGCAGGAACATTATATTACA 59.518 38.462 19.93 0.00 0.00 2.41
1826 5170 6.704493 TCGGAACTGCAGGAACATTATATTAC 59.296 38.462 19.93 0.00 0.00 1.89
1827 5171 6.822442 TCGGAACTGCAGGAACATTATATTA 58.178 36.000 19.93 0.00 0.00 0.98
1828 5172 5.680619 TCGGAACTGCAGGAACATTATATT 58.319 37.500 19.93 0.00 0.00 1.28
1829 5173 5.290493 TCGGAACTGCAGGAACATTATAT 57.710 39.130 19.93 0.00 0.00 0.86
1830 5174 4.693283 CTCGGAACTGCAGGAACATTATA 58.307 43.478 19.93 0.00 0.00 0.98
1831 5175 3.535561 CTCGGAACTGCAGGAACATTAT 58.464 45.455 19.93 0.00 0.00 1.28
1832 5176 2.935238 GCTCGGAACTGCAGGAACATTA 60.935 50.000 19.93 0.00 0.00 1.90
1836 5180 1.301716 TGCTCGGAACTGCAGGAAC 60.302 57.895 19.93 8.52 34.84 3.62
1940 5284 4.755629 ACTAGCATATGATCAGCTTGCTTG 59.244 41.667 25.58 24.63 43.08 4.01
1993 5684 4.762809 CTCGTTCAAGCTACAAGAACAAC 58.237 43.478 16.43 0.43 41.17 3.32
2086 5777 2.135933 GCACTTACCGGCATATCAGTC 58.864 52.381 0.00 0.00 0.00 3.51
2260 5954 2.189342 GCTGCTAAGCTTCTCGTACAG 58.811 52.381 0.00 4.19 46.60 2.74
2298 5992 0.457851 GCTCATGTACGAGAGGCTGT 59.542 55.000 14.07 0.00 34.79 4.40
2308 6002 0.806102 ACCATGTCGCGCTCATGTAC 60.806 55.000 28.14 12.42 40.43 2.90
2365 6059 8.515695 TGCTGATTTGTTTTCAGATGATCTAT 57.484 30.769 0.00 0.00 42.63 1.98
2366 6060 7.926674 TGCTGATTTGTTTTCAGATGATCTA 57.073 32.000 0.00 0.00 42.63 1.98
2368 6062 7.544566 ACAATGCTGATTTGTTTTCAGATGATC 59.455 33.333 4.93 0.00 42.63 2.92
2369 6063 7.383687 ACAATGCTGATTTGTTTTCAGATGAT 58.616 30.769 4.93 0.00 42.63 2.45
2385 6093 4.835678 TCAAGCTTCATAGACAATGCTGA 58.164 39.130 0.00 0.00 35.38 4.26
2660 6369 1.174783 GTTCGTACAGAGCCCAGAGA 58.825 55.000 0.00 0.00 0.00 3.10
2687 6396 0.677288 TTATATGTACGGCGGCAGCT 59.323 50.000 13.24 4.18 44.37 4.24
2827 6539 7.168804 GTCGGAAATCCCTTAAACGTCTTATAG 59.831 40.741 0.00 0.00 0.00 1.31
2909 6621 4.467084 GACGCTGGGGAATCGGCA 62.467 66.667 0.00 0.00 38.88 5.69
3011 6723 4.638304 ACAACACCAGGTACTTCACATAC 58.362 43.478 0.00 0.00 34.60 2.39
3013 6725 3.496160 GGACAACACCAGGTACTTCACAT 60.496 47.826 0.00 0.00 34.60 3.21
3133 6845 3.996825 CCTGTTATGAGGCAAACGC 57.003 52.632 0.00 0.00 0.00 4.84
3220 6933 7.276658 TCGTATCTATGTGAATGGGCTTTTAA 58.723 34.615 0.00 0.00 0.00 1.52
3221 6934 6.822442 TCGTATCTATGTGAATGGGCTTTTA 58.178 36.000 0.00 0.00 0.00 1.52
3267 6980 3.610040 TTAGGCTCTGAGCATTTTCGA 57.390 42.857 28.95 5.81 44.75 3.71
3353 7067 3.051940 TCCAGATTGCCCATAGAGTCT 57.948 47.619 0.00 0.00 0.00 3.24
3377 7091 1.723542 CGTGAATCATATCTCTGCGCC 59.276 52.381 4.18 0.00 0.00 6.53
3537 7255 4.588899 TCCATCGACATTTCCTTTCACAT 58.411 39.130 0.00 0.00 0.00 3.21
3567 7285 3.053245 TGAACTCTTCCCTTTCCAAACCA 60.053 43.478 0.00 0.00 0.00 3.67
3572 7290 2.057922 AGCTGAACTCTTCCCTTTCCA 58.942 47.619 0.00 0.00 0.00 3.53
3605 7323 0.321122 AACTGCCCTTCTTCTCAGCG 60.321 55.000 0.00 0.00 0.00 5.18
3609 7327 2.297315 CCCAAAAACTGCCCTTCTTCTC 59.703 50.000 0.00 0.00 0.00 2.87
3619 7337 1.069049 ACTGATGCACCCAAAAACTGC 59.931 47.619 0.00 0.00 0.00 4.40
3621 7339 3.299503 AGAACTGATGCACCCAAAAACT 58.700 40.909 0.00 0.00 0.00 2.66
3643 7361 0.543277 CCATCACTCTAGCCAAGGCA 59.457 55.000 14.40 0.00 44.88 4.75
3651 7369 5.242838 GGAGTAGATGGTTCCATCACTCTAG 59.757 48.000 32.25 0.00 43.68 2.43
3653 7371 3.964031 GGAGTAGATGGTTCCATCACTCT 59.036 47.826 32.25 25.48 43.68 3.24
3670 7388 2.996249 AGATCACTACGTCGGGAGTA 57.004 50.000 0.00 0.00 0.00 2.59
3671 7389 2.996249 TAGATCACTACGTCGGGAGT 57.004 50.000 0.00 0.00 0.00 3.85
3672 7390 3.545624 CGTTTAGATCACTACGTCGGGAG 60.546 52.174 0.00 0.00 0.00 4.30
3673 7391 2.352651 CGTTTAGATCACTACGTCGGGA 59.647 50.000 0.00 0.00 0.00 5.14
3674 7392 2.713011 CGTTTAGATCACTACGTCGGG 58.287 52.381 0.00 0.00 0.00 5.14
3675 7393 2.107178 GCGTTTAGATCACTACGTCGG 58.893 52.381 12.81 0.00 0.00 4.79
3676 7394 3.027710 GAGCGTTTAGATCACTACGTCG 58.972 50.000 12.81 0.00 34.89 5.12
3677 7395 4.275838 AGAGCGTTTAGATCACTACGTC 57.724 45.455 12.81 9.80 37.82 4.34
3678 7396 4.698583 AAGAGCGTTTAGATCACTACGT 57.301 40.909 12.81 0.00 37.82 3.57
3679 7397 8.951954 AATATAAGAGCGTTTAGATCACTACG 57.048 34.615 8.56 8.56 37.82 3.51
3685 7403 9.587461 GCAAAGAAATATAAGAGCGTTTAGATC 57.413 33.333 0.00 0.00 35.01 2.75
3686 7404 9.109393 TGCAAAGAAATATAAGAGCGTTTAGAT 57.891 29.630 0.00 0.00 0.00 1.98
3687 7405 8.487313 TGCAAAGAAATATAAGAGCGTTTAGA 57.513 30.769 0.00 0.00 0.00 2.10
3688 7406 8.604035 TCTGCAAAGAAATATAAGAGCGTTTAG 58.396 33.333 0.00 0.00 0.00 1.85
3689 7407 8.487313 TCTGCAAAGAAATATAAGAGCGTTTA 57.513 30.769 0.00 0.00 0.00 2.01
3690 7408 7.377766 TCTGCAAAGAAATATAAGAGCGTTT 57.622 32.000 0.00 0.00 0.00 3.60
3691 7409 6.037610 CCTCTGCAAAGAAATATAAGAGCGTT 59.962 38.462 0.00 0.00 0.00 4.84
3692 7410 5.525378 CCTCTGCAAAGAAATATAAGAGCGT 59.475 40.000 0.00 0.00 0.00 5.07
3693 7411 5.755375 TCCTCTGCAAAGAAATATAAGAGCG 59.245 40.000 0.00 0.00 0.00 5.03
3694 7412 7.281999 ACTTCCTCTGCAAAGAAATATAAGAGC 59.718 37.037 2.92 0.00 0.00 4.09
3695 7413 8.729805 ACTTCCTCTGCAAAGAAATATAAGAG 57.270 34.615 2.92 0.00 0.00 2.85
3696 7414 9.601217 GTACTTCCTCTGCAAAGAAATATAAGA 57.399 33.333 2.92 0.00 0.00 2.10
3697 7415 9.606631 AGTACTTCCTCTGCAAAGAAATATAAG 57.393 33.333 2.92 0.00 0.00 1.73
3701 7419 9.383519 CAATAGTACTTCCTCTGCAAAGAAATA 57.616 33.333 0.00 0.00 0.00 1.40
3702 7420 8.103305 TCAATAGTACTTCCTCTGCAAAGAAAT 58.897 33.333 0.00 0.00 0.00 2.17
3703 7421 7.450074 TCAATAGTACTTCCTCTGCAAAGAAA 58.550 34.615 0.00 0.00 0.00 2.52
3704 7422 7.004555 TCAATAGTACTTCCTCTGCAAAGAA 57.995 36.000 0.00 0.00 0.00 2.52
3705 7423 6.605471 TCAATAGTACTTCCTCTGCAAAGA 57.395 37.500 0.00 0.00 0.00 2.52
3706 7424 6.876257 ACTTCAATAGTACTTCCTCTGCAAAG 59.124 38.462 0.00 0.00 34.56 2.77
3707 7425 6.650807 CACTTCAATAGTACTTCCTCTGCAAA 59.349 38.462 0.00 0.00 34.56 3.68
3708 7426 6.014584 TCACTTCAATAGTACTTCCTCTGCAA 60.015 38.462 0.00 0.00 34.56 4.08
3709 7427 5.480422 TCACTTCAATAGTACTTCCTCTGCA 59.520 40.000 0.00 0.00 34.56 4.41
3710 7428 5.967088 TCACTTCAATAGTACTTCCTCTGC 58.033 41.667 0.00 0.00 34.56 4.26
3711 7429 7.865385 GCTATCACTTCAATAGTACTTCCTCTG 59.135 40.741 0.00 0.00 34.56 3.35
3712 7430 7.255312 CGCTATCACTTCAATAGTACTTCCTCT 60.255 40.741 0.00 0.00 34.56 3.69
3713 7431 6.858993 CGCTATCACTTCAATAGTACTTCCTC 59.141 42.308 0.00 0.00 34.56 3.71
3714 7432 6.321690 ACGCTATCACTTCAATAGTACTTCCT 59.678 38.462 0.00 0.00 34.56 3.36
3715 7433 6.418226 CACGCTATCACTTCAATAGTACTTCC 59.582 42.308 0.00 0.00 34.56 3.46
3716 7434 6.973474 ACACGCTATCACTTCAATAGTACTTC 59.027 38.462 0.00 0.00 34.56 3.01
3717 7435 6.864342 ACACGCTATCACTTCAATAGTACTT 58.136 36.000 0.00 0.00 34.56 2.24
3718 7436 6.452494 ACACGCTATCACTTCAATAGTACT 57.548 37.500 0.00 0.00 34.56 2.73
3719 7437 7.637229 TCTACACGCTATCACTTCAATAGTAC 58.363 38.462 0.00 0.00 34.56 2.73
3731 7449 2.014857 ACGCTTCTCTACACGCTATCA 58.985 47.619 0.00 0.00 0.00 2.15
3759 7477 6.973229 AAATTGAAACATGCATCTTTAGCC 57.027 33.333 0.00 0.00 0.00 3.93
3760 7478 9.910511 CATAAAATTGAAACATGCATCTTTAGC 57.089 29.630 0.00 0.00 0.00 3.09
3777 7495 5.649557 TCCGAAGCAATGGTCATAAAATTG 58.350 37.500 0.00 0.00 34.98 2.32
3782 7500 4.269183 ACAATCCGAAGCAATGGTCATAA 58.731 39.130 0.00 0.00 0.00 1.90
3816 7534 3.181465 GGGATACTTCCTGAATGCTTCGA 60.181 47.826 0.00 0.00 42.20 3.71
3817 7535 3.134458 GGGATACTTCCTGAATGCTTCG 58.866 50.000 0.00 0.00 42.20 3.79
3818 7536 4.429854 AGGGATACTTCCTGAATGCTTC 57.570 45.455 0.00 0.00 42.20 3.86
3823 7541 4.111577 TCACCAAGGGATACTTCCTGAAT 58.888 43.478 0.00 0.00 42.20 2.57
3825 7543 3.199442 TCACCAAGGGATACTTCCTGA 57.801 47.619 0.00 0.00 42.20 3.86
3833 7551 8.058235 TGATCATTATGTTTTCACCAAGGGATA 58.942 33.333 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.