Multiple sequence alignment - TraesCS7D01G269200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G269200 chr7D 100.000 9255 0 0 1 9255 253349826 253340572 0.000000e+00 17091.0
1 TraesCS7D01G269200 chr7D 89.693 553 38 5 7220 7763 417992302 417992844 0.000000e+00 688.0
2 TraesCS7D01G269200 chr7D 85.841 113 12 3 7105 7213 311892092 311892204 5.870000e-22 117.0
3 TraesCS7D01G269200 chr7D 87.097 93 7 4 8741 8830 63988203 63988293 5.910000e-17 100.0
4 TraesCS7D01G269200 chr7D 100.000 46 0 0 2359 2404 275790265 275790310 1.660000e-12 86.1
5 TraesCS7D01G269200 chr7D 90.385 52 5 0 7165 7216 190083110 190083059 1.670000e-07 69.4
6 TraesCS7D01G269200 chr7D 91.304 46 4 0 7764 7809 551817952 551817997 7.760000e-06 63.9
7 TraesCS7D01G269200 chr7D 91.304 46 4 0 7764 7809 551836588 551836633 7.760000e-06 63.9
8 TraesCS7D01G269200 chr7A 95.111 4418 104 30 2402 6791 271821581 271817248 0.000000e+00 6859.0
9 TraesCS7D01G269200 chr7A 94.073 1569 62 11 810 2355 271823139 271821579 0.000000e+00 2353.0
10 TraesCS7D01G269200 chr7A 90.937 982 62 14 7764 8728 271816902 271815931 0.000000e+00 1295.0
11 TraesCS7D01G269200 chr7A 83.312 797 100 17 1 787 271823962 271823189 0.000000e+00 704.0
12 TraesCS7D01G269200 chr7A 88.235 561 42 10 7220 7771 13823336 13823881 0.000000e+00 649.0
13 TraesCS7D01G269200 chr7A 88.941 425 23 9 6793 7216 271817299 271816898 3.860000e-138 503.0
14 TraesCS7D01G269200 chr7A 79.456 331 41 14 8892 9217 271815934 271815626 9.420000e-50 209.0
15 TraesCS7D01G269200 chr7A 87.654 81 9 1 8822 8902 660166898 660166819 9.900000e-15 93.5
16 TraesCS7D01G269200 chr7A 89.130 46 5 0 8969 9014 610936836 610936791 3.610000e-04 58.4
17 TraesCS7D01G269200 chr7B 95.162 3369 126 14 3433 6791 230347535 230344194 0.000000e+00 5284.0
18 TraesCS7D01G269200 chr7B 91.074 1546 80 17 841 2355 230350164 230348646 0.000000e+00 2037.0
19 TraesCS7D01G269200 chr7B 96.905 1034 31 1 2402 3435 230348648 230347616 0.000000e+00 1731.0
20 TraesCS7D01G269200 chr7B 93.758 785 34 3 7961 8740 230343697 230342923 0.000000e+00 1164.0
21 TraesCS7D01G269200 chr7B 86.633 793 91 12 4 787 230351597 230350811 0.000000e+00 863.0
22 TraesCS7D01G269200 chr7B 88.592 561 39 8 7220 7769 15322633 15323179 0.000000e+00 658.0
23 TraesCS7D01G269200 chr7B 88.330 497 31 7 8744 9217 230342847 230342355 1.040000e-158 571.0
24 TraesCS7D01G269200 chr7B 87.857 420 24 11 6799 7216 230344239 230343845 1.410000e-127 468.0
25 TraesCS7D01G269200 chr7B 96.104 154 6 0 7764 7917 230343849 230343696 1.540000e-62 252.0
26 TraesCS7D01G269200 chr7B 91.304 46 4 0 7764 7809 596701000 596701045 7.760000e-06 63.9
27 TraesCS7D01G269200 chr5A 89.228 557 38 7 7217 7763 662224620 662225164 0.000000e+00 676.0
28 TraesCS7D01G269200 chr5A 80.682 176 14 1 8741 8896 386169696 386169521 1.630000e-22 119.0
29 TraesCS7D01G269200 chr5A 92.683 82 6 0 8741 8822 548500824 548500743 1.630000e-22 119.0
30 TraesCS7D01G269200 chr5A 87.778 90 10 1 8741 8830 69192103 69192191 4.570000e-18 104.0
31 TraesCS7D01G269200 chr5A 96.078 51 2 0 2362 2412 115018679 115018629 5.960000e-12 84.2
32 TraesCS7D01G269200 chr5A 75.595 168 29 10 2366 2528 382565555 382565715 1.290000e-08 73.1
33 TraesCS7D01G269200 chr4D 89.150 553 39 6 7220 7763 472131769 472132309 0.000000e+00 669.0
34 TraesCS7D01G269200 chr4D 89.066 503 35 6 7220 7713 467497780 467497289 2.860000e-169 606.0
35 TraesCS7D01G269200 chr4D 89.231 325 33 2 4637 4959 145493811 145493487 1.120000e-108 405.0
36 TraesCS7D01G269200 chr4D 88.615 325 34 3 4637 4959 145498691 145498368 8.710000e-105 392.0
37 TraesCS7D01G269200 chr4D 88.308 325 34 4 4637 4959 145518992 145518670 4.050000e-103 387.0
38 TraesCS7D01G269200 chr4D 100.000 43 0 0 2362 2404 175961554 175961512 7.700000e-11 80.5
39 TraesCS7D01G269200 chr4D 92.857 56 1 3 2369 2421 42102648 42102593 2.770000e-10 78.7
40 TraesCS7D01G269200 chr4D 89.474 57 5 1 2354 2409 10764517 10764573 4.640000e-08 71.3
41 TraesCS7D01G269200 chr4D 85.507 69 8 2 2354 2421 85589766 85589699 4.640000e-08 71.3
42 TraesCS7D01G269200 chr4D 96.875 32 1 0 7103 7134 62741861 62741892 5.000000e-03 54.7
43 TraesCS7D01G269200 chr1D 87.842 584 46 10 7220 7792 171332322 171331753 0.000000e+00 662.0
44 TraesCS7D01G269200 chr1D 76.437 174 32 7 668 832 339359779 339359606 1.660000e-12 86.1
45 TraesCS7D01G269200 chr1D 100.000 44 0 0 2362 2405 469018732 469018689 2.140000e-11 82.4
46 TraesCS7D01G269200 chr1D 97.826 46 1 0 2359 2404 136673552 136673597 7.700000e-11 80.5
47 TraesCS7D01G269200 chr1D 100.000 43 0 0 2362 2404 171522557 171522515 7.700000e-11 80.5
48 TraesCS7D01G269200 chr1D 100.000 43 0 0 2362 2404 305479236 305479194 7.700000e-11 80.5
49 TraesCS7D01G269200 chr1D 93.182 44 3 0 7764 7807 492643915 492643872 2.160000e-06 65.8
50 TraesCS7D01G269200 chr5D 88.788 553 43 5 7220 7763 500322727 500322185 0.000000e+00 660.0
51 TraesCS7D01G269200 chr5D 90.000 90 8 1 8741 8830 250387578 250387666 2.110000e-21 115.0
52 TraesCS7D01G269200 chr5D 80.328 122 16 5 7102 7216 82322033 82322153 1.660000e-12 86.1
53 TraesCS7D01G269200 chr5D 97.826 46 1 0 2359 2404 270254098 270254143 7.700000e-11 80.5
54 TraesCS7D01G269200 chr5D 97.368 38 1 0 7765 7802 382429771 382429808 2.160000e-06 65.8
55 TraesCS7D01G269200 chr3B 88.788 553 42 5 7220 7763 597599715 597600256 0.000000e+00 660.0
56 TraesCS7D01G269200 chr3B 97.143 35 0 1 652 685 5641401 5641367 3.610000e-04 58.4
57 TraesCS7D01G269200 chr2B 88.372 559 43 12 7213 7761 108163017 108162471 0.000000e+00 652.0
58 TraesCS7D01G269200 chr2B 100.000 31 0 0 7892 7922 206113853 206113883 3.610000e-04 58.4
59 TraesCS7D01G269200 chr1A 88.309 556 45 6 7220 7766 563166526 563165982 0.000000e+00 649.0
60 TraesCS7D01G269200 chr1A 93.333 90 5 1 8741 8830 91044688 91044776 2.100000e-26 132.0
61 TraesCS7D01G269200 chr1A 90.000 90 6 2 8741 8830 271622671 271622585 7.600000e-21 113.0
62 TraesCS7D01G269200 chr1A 91.026 78 7 0 8822 8899 326525192 326525115 1.270000e-18 106.0
63 TraesCS7D01G269200 chr1A 86.667 90 11 1 8741 8830 373602828 373602740 2.130000e-16 99.0
64 TraesCS7D01G269200 chr1A 100.000 44 0 0 2362 2405 550443037 550442994 2.140000e-11 82.4
65 TraesCS7D01G269200 chr1A 90.164 61 4 2 2345 2405 9093046 9092988 2.770000e-10 78.7
66 TraesCS7D01G269200 chr1A 93.182 44 3 0 7764 7807 591151520 591151477 2.160000e-06 65.8
67 TraesCS7D01G269200 chr1B 86.885 549 50 8 7220 7766 282329589 282329061 6.190000e-166 595.0
68 TraesCS7D01G269200 chr6D 89.015 264 20 3 7500 7763 204942787 204943041 1.500000e-82 318.0
69 TraesCS7D01G269200 chr6D 93.407 91 6 0 8740 8830 50177945 50178035 1.620000e-27 135.0
70 TraesCS7D01G269200 chr6D 92.683 82 6 0 8741 8822 153811610 153811691 1.630000e-22 119.0
71 TraesCS7D01G269200 chr6D 89.024 82 9 0 8741 8822 37602649 37602568 1.640000e-17 102.0
72 TraesCS7D01G269200 chr6D 97.778 45 1 0 2362 2406 136551402 136551446 2.770000e-10 78.7
73 TraesCS7D01G269200 chr6D 97.674 43 1 0 2362 2404 38576302 38576260 3.580000e-09 75.0
74 TraesCS7D01G269200 chr6D 97.674 43 1 0 2362 2404 307327656 307327614 3.580000e-09 75.0
75 TraesCS7D01G269200 chr6D 90.741 54 3 2 7764 7815 472941260 472941207 4.640000e-08 71.3
76 TraesCS7D01G269200 chr3A 86.691 278 26 4 7500 7776 11626300 11626033 1.950000e-76 298.0
77 TraesCS7D01G269200 chr3A 85.393 89 13 0 657 745 594587842 594587754 9.900000e-15 93.5
78 TraesCS7D01G269200 chr3A 81.034 116 16 6 668 778 129484634 129484748 4.600000e-13 87.9
79 TraesCS7D01G269200 chr3A 84.884 86 12 1 8737 8822 682747134 682747218 1.660000e-12 86.1
80 TraesCS7D01G269200 chr2A 89.595 173 8 4 7591 7763 44209661 44209823 2.620000e-50 211.0
81 TraesCS7D01G269200 chr2A 91.071 56 5 0 2359 2414 447156354 447156409 9.970000e-10 76.8
82 TraesCS7D01G269200 chr2A 92.593 54 3 1 2362 2415 610238674 610238622 9.970000e-10 76.8
83 TraesCS7D01G269200 chr2A 100.000 31 0 0 7892 7922 156371244 156371214 3.610000e-04 58.4
84 TraesCS7D01G269200 chr3D 87.368 190 15 2 7583 7772 562414470 562414650 9.420000e-50 209.0
85 TraesCS7D01G269200 chr3D 100.000 44 0 0 2362 2405 341502450 341502407 2.140000e-11 82.4
86 TraesCS7D01G269200 chr3D 94.000 50 3 0 2362 2411 279902252 279902203 9.970000e-10 76.8
87 TraesCS7D01G269200 chr3D 100.000 28 0 0 7922 7949 140342187 140342214 1.700000e-02 52.8
88 TraesCS7D01G269200 chr5B 87.293 181 14 3 7583 7763 616833629 616833800 2.040000e-46 198.0
89 TraesCS7D01G269200 chr5B 91.667 48 1 3 7764 7810 14651922 14651877 7.760000e-06 63.9
90 TraesCS7D01G269200 chr5B 91.667 48 1 3 7764 7810 14697771 14697726 7.760000e-06 63.9
91 TraesCS7D01G269200 chr5B 100.000 30 0 0 7105 7134 677532798 677532769 1.000000e-03 56.5
92 TraesCS7D01G269200 chr6B 80.682 176 14 1 8741 8896 113783350 113783175 1.630000e-22 119.0
93 TraesCS7D01G269200 chr6B 90.110 91 9 0 8740 8830 121434545 121434455 1.630000e-22 119.0
94 TraesCS7D01G269200 chr6B 90.541 74 6 1 8822 8895 101738499 101738427 7.650000e-16 97.1
95 TraesCS7D01G269200 chr4A 79.429 175 16 5 8741 8895 81280905 81280731 1.270000e-18 106.0
96 TraesCS7D01G269200 chr2D 85.366 82 12 0 8741 8822 303626759 303626840 1.660000e-12 86.1
97 TraesCS7D01G269200 chr2D 78.400 125 19 8 9060 9180 470136180 470136060 3.580000e-09 75.0
98 TraesCS7D01G269200 chr2D 100.000 31 0 0 7892 7922 145889551 145889581 3.610000e-04 58.4
99 TraesCS7D01G269200 chr4B 97.872 47 1 0 2362 2408 644869269 644869223 2.140000e-11 82.4
100 TraesCS7D01G269200 chr4B 100.000 31 0 0 7893 7923 9703081 9703111 3.610000e-04 58.4
101 TraesCS7D01G269200 chrUn 97.826 46 0 1 2362 2406 2654559 2654514 2.770000e-10 78.7
102 TraesCS7D01G269200 chrUn 95.833 48 2 0 2362 2409 310553618 310553571 2.770000e-10 78.7
103 TraesCS7D01G269200 chrUn 95.652 46 2 0 2359 2404 19208415 19208460 3.580000e-09 75.0
104 TraesCS7D01G269200 chrUn 95.652 46 2 0 2359 2404 31310454 31310499 3.580000e-09 75.0
105 TraesCS7D01G269200 chrUn 91.071 56 4 1 2354 2408 100201214 100201159 3.580000e-09 75.0
106 TraesCS7D01G269200 chrUn 100.000 39 0 0 2366 2404 12152763 12152801 1.290000e-08 73.1
107 TraesCS7D01G269200 chrUn 100.000 39 0 0 2366 2404 58367645 58367683 1.290000e-08 73.1
108 TraesCS7D01G269200 chrUn 100.000 39 0 0 2366 2404 59820012 59820050 1.290000e-08 73.1
109 TraesCS7D01G269200 chrUn 100.000 39 0 0 2366 2404 105150898 105150860 1.290000e-08 73.1
110 TraesCS7D01G269200 chrUn 97.674 43 0 1 2362 2404 246239864 246239823 1.290000e-08 73.1
111 TraesCS7D01G269200 chrUn 97.674 43 0 1 2362 2404 295633944 295633903 1.290000e-08 73.1
112 TraesCS7D01G269200 chrUn 90.566 53 4 1 2354 2405 150797866 150797918 1.670000e-07 69.4
113 TraesCS7D01G269200 chrUn 87.931 58 5 2 2354 2410 304504601 304504657 6.000000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G269200 chr7D 253340572 253349826 9254 True 17091.000000 17091 100.000000 1 9255 1 chr7D.!!$R2 9254
1 TraesCS7D01G269200 chr7D 417992302 417992844 542 False 688.000000 688 89.693000 7220 7763 1 chr7D.!!$F4 543
2 TraesCS7D01G269200 chr7A 271815626 271823962 8336 True 1987.166667 6859 88.638333 1 9217 6 chr7A.!!$R3 9216
3 TraesCS7D01G269200 chr7A 13823336 13823881 545 False 649.000000 649 88.235000 7220 7771 1 chr7A.!!$F1 551
4 TraesCS7D01G269200 chr7B 230342355 230351597 9242 True 1546.250000 5284 91.977875 4 9217 8 chr7B.!!$R1 9213
5 TraesCS7D01G269200 chr7B 15322633 15323179 546 False 658.000000 658 88.592000 7220 7769 1 chr7B.!!$F1 549
6 TraesCS7D01G269200 chr5A 662224620 662225164 544 False 676.000000 676 89.228000 7217 7763 1 chr5A.!!$F3 546
7 TraesCS7D01G269200 chr4D 472131769 472132309 540 False 669.000000 669 89.150000 7220 7763 1 chr4D.!!$F3 543
8 TraesCS7D01G269200 chr1D 171331753 171332322 569 True 662.000000 662 87.842000 7220 7792 1 chr1D.!!$R1 572
9 TraesCS7D01G269200 chr5D 500322185 500322727 542 True 660.000000 660 88.788000 7220 7763 1 chr5D.!!$R1 543
10 TraesCS7D01G269200 chr3B 597599715 597600256 541 False 660.000000 660 88.788000 7220 7763 1 chr3B.!!$F1 543
11 TraesCS7D01G269200 chr2B 108162471 108163017 546 True 652.000000 652 88.372000 7213 7761 1 chr2B.!!$R1 548
12 TraesCS7D01G269200 chr1A 563165982 563166526 544 True 649.000000 649 88.309000 7220 7766 1 chr1A.!!$R6 546
13 TraesCS7D01G269200 chr1B 282329061 282329589 528 True 595.000000 595 86.885000 7220 7766 1 chr1B.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 658 0.173708 GTAGTCCCAAGTGCGAGAGG 59.826 60.000 0.00 0.00 0.00 3.69 F
680 686 0.240945 CGGGCATTGGTGTCAAACTC 59.759 55.000 0.00 0.00 36.36 3.01 F
1525 2175 1.200519 GGCCATCTACCAGGTGTGTA 58.799 55.000 0.76 0.00 0.00 2.90 F
2310 2978 2.187599 CTCCAAAAAGAGGGCGCACG 62.188 60.000 10.83 0.00 0.00 5.34 F
2400 3074 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
2401 3075 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30 F
2402 3076 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
2403 3077 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 F
2727 3401 1.076044 ACCTTGTGTTGCCCTTGCT 60.076 52.632 0.00 0.00 38.71 3.91 F
3867 4626 2.161609 GGGACATTTCTTTACCAGCGTG 59.838 50.000 0.00 0.00 0.00 5.34 F
5127 5928 2.159819 GAGCTGTCGTCTGGGCAGAA 62.160 60.000 0.00 0.00 39.48 3.02 F
5707 6512 1.152830 GGTGGTGGTGTGGGTTCAT 59.847 57.895 0.00 0.00 0.00 2.57 F
6916 7727 1.109323 GCCTTGCACCAACCAAGAGT 61.109 55.000 2.93 0.00 41.64 3.24 F
7604 8431 1.203389 ACGGGCAGGGTATGGGTATAT 60.203 52.381 0.00 0.00 0.00 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 3055 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
2384 3058 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 R
2389 3063 0.107017 TAACCTACTCCCTCCGTCCG 60.107 60.000 0.00 0.0 0.00 4.79 R
4222 4981 1.263356 TACTGGGGACGAACAAGAGG 58.737 55.000 0.00 0.0 0.00 3.69 R
4478 5241 3.699538 ACACACACTGACAACTCTACTGA 59.300 43.478 0.00 0.0 0.00 3.41 R
4480 5243 3.699538 TGACACACACTGACAACTCTACT 59.300 43.478 0.00 0.0 0.00 2.57 R
4481 5244 3.797256 GTGACACACACTGACAACTCTAC 59.203 47.826 0.00 0.0 45.13 2.59 R
4482 5245 4.041740 GTGACACACACTGACAACTCTA 57.958 45.455 0.00 0.0 45.13 2.43 R
4582 5366 2.044758 AGGGTAAGAAACACCGACACT 58.955 47.619 0.00 0.0 36.89 3.55 R
5158 5959 0.593128 GTTGTTCTTGCTCGCCATGT 59.407 50.000 0.00 0.0 0.00 3.21 R
6228 7034 2.036089 GGTCCTCTCTTTTGACGAGTGT 59.964 50.000 0.00 0.0 0.00 3.55 R
7217 8031 0.484212 CCCACCCATTGCCATCCTAT 59.516 55.000 0.00 0.0 0.00 2.57 R
7814 8641 0.249911 ACTGTCTCGCAAAGGTGACC 60.250 55.000 0.00 0.0 0.00 4.02 R
9219 10164 0.249489 AACTCGAGCTCGCACACTTT 60.249 50.000 30.97 13.4 39.60 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 3.099141 CAACCATGTTTCCCATAGCCTT 58.901 45.455 0.00 0.00 30.71 4.35
129 132 3.689161 TGAATCAGATCGGACGCAAAATT 59.311 39.130 0.00 0.00 0.00 1.82
216 219 4.947147 ATGCCGCCACCACGTGTT 62.947 61.111 15.65 0.00 0.00 3.32
235 238 5.278604 GTGTTTGTAGTTGTGATTGGGAAC 58.721 41.667 0.00 0.00 0.00 3.62
276 279 4.422057 TGATACCAACTGTAAGGGACTCA 58.578 43.478 4.51 1.97 38.49 3.41
288 291 0.945813 GGGACTCACTCGATCTACGG 59.054 60.000 0.00 0.00 42.82 4.02
306 309 1.737793 CGGAATTGTGCTAGGGTTCAC 59.262 52.381 0.00 0.00 0.00 3.18
340 343 6.095440 CGAATGGGGAATTGAGTTTTCTGTAT 59.905 38.462 0.00 0.00 0.00 2.29
344 347 6.180472 GGGGAATTGAGTTTTCTGTATCTGA 58.820 40.000 0.00 0.00 0.00 3.27
390 393 4.402793 ACAAGAGATAGTACAACATCGGCT 59.597 41.667 0.00 0.00 0.00 5.52
396 399 1.001974 AGTACAACATCGGCTGAAGCA 59.998 47.619 0.00 0.00 44.36 3.91
441 444 5.618236 TCTACCTCGCTTACAGATAGCTAA 58.382 41.667 0.00 0.00 36.49 3.09
447 450 8.368668 ACCTCGCTTACAGATAGCTAATTAAAT 58.631 33.333 0.00 0.00 36.49 1.40
463 466 9.562583 GCTAATTAAATGAAATGACCGTTAACA 57.437 29.630 6.39 0.00 0.00 2.41
472 475 7.759465 TGAAATGACCGTTAACAAAGTTAACA 58.241 30.769 24.18 11.31 35.27 2.41
473 476 8.407064 TGAAATGACCGTTAACAAAGTTAACAT 58.593 29.630 24.18 15.57 35.27 2.71
517 520 1.074872 GCCGGTAGTTTCTTCGGTCG 61.075 60.000 1.90 0.00 43.87 4.79
548 552 1.976474 GCCTTCGGCCCATTTGTCA 60.976 57.895 0.00 0.00 44.06 3.58
561 565 4.500545 CCCATTTGTCACGTTTGAATCCAA 60.501 41.667 0.00 0.00 31.90 3.53
574 578 2.745884 TCCAACGCGCCTTGGATG 60.746 61.111 29.58 9.60 44.05 3.51
587 591 0.969917 TTGGATGTTTGCCGGATGGG 60.970 55.000 5.05 0.00 39.58 4.00
588 592 1.077068 GGATGTTTGCCGGATGGGA 60.077 57.895 5.05 0.00 38.47 4.37
597 601 2.044806 GCCGGATGGGATACAGTGCT 62.045 60.000 5.05 0.00 38.47 4.40
599 603 1.273606 CCGGATGGGATACAGTGCTAG 59.726 57.143 0.00 0.00 38.47 3.42
624 628 1.908793 CTGTCACCCGTCCCTCTGT 60.909 63.158 0.00 0.00 0.00 3.41
630 634 0.335361 ACCCGTCCCTCTGTATCTGT 59.665 55.000 0.00 0.00 0.00 3.41
632 636 2.024655 ACCCGTCCCTCTGTATCTGTAA 60.025 50.000 0.00 0.00 0.00 2.41
642 646 5.299782 CCTCTGTATCTGTAAGTGTAGTCCC 59.700 48.000 0.00 0.00 33.76 4.46
649 653 2.288579 TGTAAGTGTAGTCCCAAGTGCG 60.289 50.000 0.00 0.00 0.00 5.34
654 658 0.173708 GTAGTCCCAAGTGCGAGAGG 59.826 60.000 0.00 0.00 0.00 3.69
661 665 1.402984 CCAAGTGCGAGAGGTAGTGAC 60.403 57.143 0.00 0.00 0.00 3.67
666 670 2.044555 CGAGAGGTAGTGACGGGCA 61.045 63.158 0.00 0.00 0.00 5.36
677 681 0.466372 TGACGGGCATTGGTGTCAAA 60.466 50.000 0.00 0.00 38.32 2.69
680 686 0.240945 CGGGCATTGGTGTCAAACTC 59.759 55.000 0.00 0.00 36.36 3.01
694 701 3.929610 GTCAAACTCAGAGGATTCTTCGG 59.070 47.826 1.53 0.00 0.00 4.30
697 704 2.104170 ACTCAGAGGATTCTTCGGTCC 58.896 52.381 1.53 0.00 34.64 4.46
709 716 7.715686 AGGATTCTTCGGTCCTAATTGTAATTC 59.284 37.037 0.00 0.00 42.93 2.17
719 727 9.232473 GGTCCTAATTGTAATTCTCTTTCTTGT 57.768 33.333 0.00 0.00 0.00 3.16
730 738 5.122512 TCTCTTTCTTGTCTAGTGTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
735 743 5.518848 TTCTTGTCTAGTGTTCCGTTGTA 57.481 39.130 0.00 0.00 0.00 2.41
736 744 5.717078 TCTTGTCTAGTGTTCCGTTGTAT 57.283 39.130 0.00 0.00 0.00 2.29
746 754 9.798994 CTAGTGTTCCGTTGTATAAAGACTAAT 57.201 33.333 0.00 0.00 30.17 1.73
781 792 5.235616 TCAGTTTTGTCAGGTCGATGTTTAC 59.764 40.000 0.00 0.00 0.00 2.01
783 794 3.374220 TTGTCAGGTCGATGTTTACGT 57.626 42.857 0.00 0.00 0.00 3.57
787 798 4.694982 TGTCAGGTCGATGTTTACGTACTA 59.305 41.667 0.00 0.00 0.00 1.82
788 799 5.355071 TGTCAGGTCGATGTTTACGTACTAT 59.645 40.000 0.00 0.00 0.00 2.12
789 800 5.680229 GTCAGGTCGATGTTTACGTACTATG 59.320 44.000 0.00 0.00 0.00 2.23
790 801 5.585844 TCAGGTCGATGTTTACGTACTATGA 59.414 40.000 0.00 0.00 0.00 2.15
791 802 6.261603 TCAGGTCGATGTTTACGTACTATGAT 59.738 38.462 0.00 0.00 0.00 2.45
796 807 9.655769 GTCGATGTTTACGTACTATGATTTCTA 57.344 33.333 0.00 0.00 0.00 2.10
929 1567 2.657237 CCGTGACCCTGACAGACC 59.343 66.667 3.32 0.00 0.00 3.85
935 1573 2.603473 CCCTGACAGACCGACCCA 60.603 66.667 3.32 0.00 0.00 4.51
949 1587 2.438434 CCCAACCGCCAGATCACC 60.438 66.667 0.00 0.00 0.00 4.02
950 1588 2.350895 CCAACCGCCAGATCACCA 59.649 61.111 0.00 0.00 0.00 4.17
970 1608 3.366985 CCAGTACGAAGCACATAGACACA 60.367 47.826 0.00 0.00 0.00 3.72
974 1612 2.263077 CGAAGCACATAGACACACTCC 58.737 52.381 0.00 0.00 0.00 3.85
982 1620 2.810870 TAGACACACTCCTCCTCTCC 57.189 55.000 0.00 0.00 0.00 3.71
1158 1808 4.364409 GCCGCGCTTCGTTCGTTT 62.364 61.111 5.56 0.00 36.19 3.60
1525 2175 1.200519 GGCCATCTACCAGGTGTGTA 58.799 55.000 0.76 0.00 0.00 2.90
2087 2753 4.311816 AGCTCACTGTCATTTTGGTTTG 57.688 40.909 0.00 0.00 0.00 2.93
2118 2785 3.423123 GCCGAGTTCTGTTTATGTTGACG 60.423 47.826 0.00 0.00 0.00 4.35
2274 2942 7.170489 CACAGATGTAGGTTCATTACTGCTATG 59.830 40.741 0.00 0.00 0.00 2.23
2310 2978 2.187599 CTCCAAAAAGAGGGCGCACG 62.188 60.000 10.83 0.00 0.00 5.34
2361 3035 9.683870 TTTAACCAATATAAAATGTACTCCCGT 57.316 29.630 0.00 0.00 0.00 5.28
2362 3036 9.683870 TTAACCAATATAAAATGTACTCCCGTT 57.316 29.630 0.00 0.00 0.00 4.44
2363 3037 8.584063 AACCAATATAAAATGTACTCCCGTTT 57.416 30.769 0.00 0.00 0.00 3.60
2364 3038 8.584063 ACCAATATAAAATGTACTCCCGTTTT 57.416 30.769 0.00 0.00 37.34 2.43
2365 3039 9.683870 ACCAATATAAAATGTACTCCCGTTTTA 57.316 29.630 0.00 0.00 39.08 1.52
2370 3044 8.990163 ATAAAATGTACTCCCGTTTTATCCAT 57.010 30.769 0.00 0.00 40.15 3.41
2371 3045 7.712204 AAAATGTACTCCCGTTTTATCCATT 57.288 32.000 0.00 0.00 33.05 3.16
2372 3046 7.712204 AAATGTACTCCCGTTTTATCCATTT 57.288 32.000 0.00 0.00 0.00 2.32
2373 3047 6.937436 ATGTACTCCCGTTTTATCCATTTC 57.063 37.500 0.00 0.00 0.00 2.17
2374 3048 6.057321 TGTACTCCCGTTTTATCCATTTCT 57.943 37.500 0.00 0.00 0.00 2.52
2375 3049 7.185318 TGTACTCCCGTTTTATCCATTTCTA 57.815 36.000 0.00 0.00 0.00 2.10
2376 3050 7.270047 TGTACTCCCGTTTTATCCATTTCTAG 58.730 38.462 0.00 0.00 0.00 2.43
2377 3051 5.681639 ACTCCCGTTTTATCCATTTCTAGG 58.318 41.667 0.00 0.00 0.00 3.02
2378 3052 5.427481 ACTCCCGTTTTATCCATTTCTAGGA 59.573 40.000 0.00 0.00 39.97 2.94
2379 3053 5.677567 TCCCGTTTTATCCATTTCTAGGAC 58.322 41.667 0.00 0.00 38.13 3.85
2380 3054 5.190132 TCCCGTTTTATCCATTTCTAGGACA 59.810 40.000 0.00 0.00 38.13 4.02
2381 3055 5.883673 CCCGTTTTATCCATTTCTAGGACAA 59.116 40.000 0.00 0.00 38.13 3.18
2382 3056 6.038271 CCCGTTTTATCCATTTCTAGGACAAG 59.962 42.308 0.00 0.00 38.13 3.16
2383 3057 6.598064 CCGTTTTATCCATTTCTAGGACAAGT 59.402 38.462 0.00 0.00 38.13 3.16
2384 3058 7.767198 CCGTTTTATCCATTTCTAGGACAAGTA 59.233 37.037 0.00 0.00 38.13 2.24
2385 3059 9.326413 CGTTTTATCCATTTCTAGGACAAGTAT 57.674 33.333 0.00 0.00 38.13 2.12
2389 3063 9.847224 TTATCCATTTCTAGGACAAGTATTTCC 57.153 33.333 0.00 0.00 38.13 3.13
2390 3064 6.346096 TCCATTTCTAGGACAAGTATTTCCG 58.654 40.000 0.00 0.00 36.95 4.30
2391 3065 5.527582 CCATTTCTAGGACAAGTATTTCCGG 59.472 44.000 0.00 0.00 36.95 5.14
2392 3066 6.346096 CATTTCTAGGACAAGTATTTCCGGA 58.654 40.000 0.00 0.00 36.95 5.14
2393 3067 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
2394 3068 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
2395 3069 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2396 3070 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2397 3071 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2398 3072 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2399 3073 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2400 3074 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2401 3075 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2402 3076 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2403 3077 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2450 3124 9.793259 ATACCATTACATCTGTATCCGAATTTT 57.207 29.630 0.00 0.00 0.00 1.82
2631 3305 6.294731 GCCTTCTAGTTTGATTTCAACCACAT 60.295 38.462 0.00 0.00 35.28 3.21
2651 3325 6.127730 CCACATATTTTCTTGGGTGTTACCTC 60.128 42.308 0.00 0.00 38.64 3.85
2663 3337 3.872771 GGTGTTACCTCGAGTTGTTTCAA 59.127 43.478 12.31 0.00 34.73 2.69
2727 3401 1.076044 ACCTTGTGTTGCCCTTGCT 60.076 52.632 0.00 0.00 38.71 3.91
3202 3876 8.239998 CCAGATCTCATCCTTTTTGACTAAAAC 58.760 37.037 0.00 0.00 35.62 2.43
3232 3906 4.772100 ACCACATACTTTAATTTGCTGCCT 59.228 37.500 0.00 0.00 0.00 4.75
3271 3945 3.514645 CCAAAAAGTGTATGCCTGATGC 58.485 45.455 0.00 0.00 41.77 3.91
3638 4397 8.693542 ATTAACATGCTTGTCTCTTAAAATGC 57.306 30.769 5.61 0.00 34.06 3.56
3867 4626 2.161609 GGGACATTTCTTTACCAGCGTG 59.838 50.000 0.00 0.00 0.00 5.34
3894 4653 4.314522 TCAGGCATTTTAATGTCCAGGA 57.685 40.909 14.18 0.00 41.85 3.86
3900 4659 5.127682 GGCATTTTAATGTCCAGGAGTTCAT 59.872 40.000 0.00 0.00 38.65 2.57
4138 4897 9.851686 ATGCCTTCTTTATGTTATTCATGTCTA 57.148 29.630 0.00 0.00 37.91 2.59
4202 4961 6.529125 GGTTCAGTTGTTCATTCTGCAATATG 59.471 38.462 0.00 0.00 0.00 1.78
4222 4981 4.273148 TGAGCCTTCTCTTTACTTGACC 57.727 45.455 0.00 0.00 40.03 4.02
4572 5356 2.694628 TGTACCGTGACTACCTTGTGTT 59.305 45.455 0.00 0.00 0.00 3.32
4573 5357 2.994186 ACCGTGACTACCTTGTGTTT 57.006 45.000 0.00 0.00 0.00 2.83
4574 5358 4.340666 TGTACCGTGACTACCTTGTGTTTA 59.659 41.667 0.00 0.00 0.00 2.01
4575 5359 4.612264 ACCGTGACTACCTTGTGTTTAT 57.388 40.909 0.00 0.00 0.00 1.40
4576 5360 4.964593 ACCGTGACTACCTTGTGTTTATT 58.035 39.130 0.00 0.00 0.00 1.40
4577 5361 4.753107 ACCGTGACTACCTTGTGTTTATTG 59.247 41.667 0.00 0.00 0.00 1.90
4578 5362 4.753107 CCGTGACTACCTTGTGTTTATTGT 59.247 41.667 0.00 0.00 0.00 2.71
4579 5363 5.237779 CCGTGACTACCTTGTGTTTATTGTT 59.762 40.000 0.00 0.00 0.00 2.83
4580 5364 6.238538 CCGTGACTACCTTGTGTTTATTGTTT 60.239 38.462 0.00 0.00 0.00 2.83
4581 5365 7.190871 CGTGACTACCTTGTGTTTATTGTTTT 58.809 34.615 0.00 0.00 0.00 2.43
4582 5366 8.336806 CGTGACTACCTTGTGTTTATTGTTTTA 58.663 33.333 0.00 0.00 0.00 1.52
4583 5367 9.659830 GTGACTACCTTGTGTTTATTGTTTTAG 57.340 33.333 0.00 0.00 0.00 1.85
4584 5368 9.398538 TGACTACCTTGTGTTTATTGTTTTAGT 57.601 29.630 0.00 0.00 0.00 2.24
4630 5414 7.837187 TCCTGTTCCCCCTAGTATTTTTATTTG 59.163 37.037 0.00 0.00 0.00 2.32
4634 5418 6.675565 TCCCCCTAGTATTTTTATTTGGACC 58.324 40.000 0.00 0.00 0.00 4.46
5127 5928 2.159819 GAGCTGTCGTCTGGGCAGAA 62.160 60.000 0.00 0.00 39.48 3.02
5200 6001 1.934463 CACGAGTGTGGTTGCTGAC 59.066 57.895 0.00 0.00 42.59 3.51
5297 6102 7.920682 TCAATTCTTGCTGAAGTAAAAAGAACC 59.079 33.333 0.00 0.00 39.08 3.62
5326 6131 5.195940 CAGGTCATGGAATCCAATGTTACT 58.804 41.667 5.89 0.00 36.95 2.24
5496 6301 6.073327 TGTGTAAGCCTCTTATATCACTCG 57.927 41.667 0.00 0.00 0.00 4.18
5577 6382 2.843113 ACCTAGGAAGCAGAATCAAGCT 59.157 45.455 17.98 0.00 44.31 3.74
5636 6441 5.135383 CCAGATCCACATGAACAATATGGT 58.865 41.667 0.00 0.00 0.00 3.55
5707 6512 1.152830 GGTGGTGGTGTGGGTTCAT 59.847 57.895 0.00 0.00 0.00 2.57
5760 6565 3.749665 AGATGTCTTCTAGCCTGCATC 57.250 47.619 0.00 0.00 30.96 3.91
5819 6624 4.153117 CAGGATAAGTTCAACTGTGAGTGC 59.847 45.833 0.00 0.00 34.49 4.40
5820 6625 4.065088 GGATAAGTTCAACTGTGAGTGCA 58.935 43.478 0.00 0.00 34.49 4.57
5969 6775 4.400567 GGAAGCTAGATGATTTTGTGGCTT 59.599 41.667 0.00 0.00 40.71 4.35
5970 6776 5.573337 AAGCTAGATGATTTTGTGGCTTC 57.427 39.130 0.00 0.00 34.31 3.86
6010 6816 5.452078 TTCCCTGCATTACTTTTGTCAAG 57.548 39.130 0.00 0.00 0.00 3.02
6330 7136 4.420522 AATTTGGCAATCAACACCAAGT 57.579 36.364 0.00 0.00 43.93 3.16
6370 7176 1.543944 TTCGAGCTGGGCAGTCATCA 61.544 55.000 0.00 0.00 0.00 3.07
6440 7249 3.696051 CCCTACACATGACAAAATCCCAG 59.304 47.826 0.00 0.00 0.00 4.45
6625 7436 4.337555 GGTAGCTTGTCTTGAGGTACGATA 59.662 45.833 0.00 0.00 44.77 2.92
6712 7523 8.818860 TGGTTGTTACTGTTAATACTACCTCAT 58.181 33.333 0.00 0.00 37.32 2.90
6785 7596 9.496873 TCGTTTCTGGATTTACTTTATTTGAGA 57.503 29.630 0.00 0.00 0.00 3.27
6855 7666 4.240881 TGAGAAATTTCCATCCCCAGAG 57.759 45.455 14.61 0.00 0.00 3.35
6916 7727 1.109323 GCCTTGCACCAACCAAGAGT 61.109 55.000 2.93 0.00 41.64 3.24
6992 7804 5.582689 AGCAATGCCTTTTGATTACCTAC 57.417 39.130 0.00 0.00 0.00 3.18
7028 7840 6.873605 CAGATAATATGCGGAATTGTCCAGTA 59.126 38.462 0.00 0.00 45.26 2.74
7029 7841 7.550551 CAGATAATATGCGGAATTGTCCAGTAT 59.449 37.037 0.00 0.00 45.26 2.12
7030 7842 8.103305 AGATAATATGCGGAATTGTCCAGTATT 58.897 33.333 0.00 0.00 45.26 1.89
7072 7884 7.667043 ATGTCGTGATTAAAGTACATGTTGT 57.333 32.000 2.30 0.00 0.00 3.32
7073 7885 7.485418 TGTCGTGATTAAAGTACATGTTGTT 57.515 32.000 2.30 0.00 0.00 2.83
7074 7886 8.590719 TGTCGTGATTAAAGTACATGTTGTTA 57.409 30.769 2.30 0.00 0.00 2.41
7075 7887 8.705134 TGTCGTGATTAAAGTACATGTTGTTAG 58.295 33.333 2.30 0.00 0.00 2.34
7076 7888 7.686938 GTCGTGATTAAAGTACATGTTGTTAGC 59.313 37.037 2.30 0.00 0.00 3.09
7077 7889 7.601130 TCGTGATTAAAGTACATGTTGTTAGCT 59.399 33.333 2.30 0.00 0.00 3.32
7078 7890 8.865978 CGTGATTAAAGTACATGTTGTTAGCTA 58.134 33.333 2.30 0.00 0.00 3.32
7079 7891 9.968743 GTGATTAAAGTACATGTTGTTAGCTAC 57.031 33.333 2.30 0.00 0.00 3.58
7080 7892 9.938280 TGATTAAAGTACATGTTGTTAGCTACT 57.062 29.630 2.30 0.00 0.00 2.57
7085 7897 9.720769 AAAGTACATGTTGTTAGCTACTTACAT 57.279 29.630 2.30 0.43 34.92 2.29
7130 7942 7.918076 ACTCCCTCAGTTCACAAATATAAGAA 58.082 34.615 0.00 0.00 26.56 2.52
7164 7976 4.630894 TTGGGAATCGAATGCATAACAC 57.369 40.909 0.00 0.00 0.00 3.32
7214 8028 9.516546 AGTCTGTATACAGTCGATATTGGAATA 57.483 33.333 27.83 5.11 44.12 1.75
7234 8048 2.662535 TGATAGGATGGCAATGGGTG 57.337 50.000 0.00 0.00 0.00 4.61
7274 8088 3.724738 AGCAATACCATACCCATACCCAA 59.275 43.478 0.00 0.00 0.00 4.12
7344 8158 3.553828 AACTTCACCCATACCCATACG 57.446 47.619 0.00 0.00 0.00 3.06
7345 8159 1.766496 ACTTCACCCATACCCATACGG 59.234 52.381 0.00 0.00 37.81 4.02
7604 8431 1.203389 ACGGGCAGGGTATGGGTATAT 60.203 52.381 0.00 0.00 0.00 0.86
7609 8436 2.467880 CAGGGTATGGGTATATCCGCT 58.532 52.381 0.00 0.00 43.62 5.52
7633 8460 2.755686 ACAAGGCTATACCCGTACCTT 58.244 47.619 0.00 0.00 41.38 3.50
7634 8461 3.914771 ACAAGGCTATACCCGTACCTTA 58.085 45.455 0.00 0.00 38.67 2.69
7635 8462 3.638627 ACAAGGCTATACCCGTACCTTAC 59.361 47.826 0.00 0.00 38.67 2.34
7636 8463 2.881734 AGGCTATACCCGTACCTTACC 58.118 52.381 0.00 0.00 40.58 2.85
7637 8464 1.895798 GGCTATACCCGTACCTTACCC 59.104 57.143 0.00 0.00 0.00 3.69
7638 8465 2.597455 GCTATACCCGTACCTTACCCA 58.403 52.381 0.00 0.00 0.00 4.51
7639 8466 3.168292 GCTATACCCGTACCTTACCCAT 58.832 50.000 0.00 0.00 0.00 4.00
7640 8467 3.056322 GCTATACCCGTACCTTACCCATG 60.056 52.174 0.00 0.00 0.00 3.66
7641 8468 2.548464 TACCCGTACCTTACCCATGT 57.452 50.000 0.00 0.00 0.00 3.21
7706 8533 2.694616 AAAAGTGTGCCCATACCCTT 57.305 45.000 0.00 0.00 0.00 3.95
7763 8590 4.277476 CTGTGGGTAAAATTGCCATCCTA 58.723 43.478 2.69 0.00 34.27 2.94
7814 8641 7.798596 ACAGATGGAGTAGCATTTTATCTTG 57.201 36.000 0.00 0.00 0.00 3.02
7895 8723 6.403878 TCTTGTCTGGTGCTAAAATACTACC 58.596 40.000 0.00 0.00 0.00 3.18
7928 8756 8.662141 GTTCCAAAATACTTGTCGTGTACATAT 58.338 33.333 0.00 0.00 38.10 1.78
7936 8764 7.681939 ACTTGTCGTGTACATATTTTGGAAT 57.318 32.000 0.00 0.00 38.10 3.01
7953 8781 2.897969 GGAATGGAGGGAGTAGCGAATA 59.102 50.000 0.00 0.00 0.00 1.75
7959 8787 3.494398 GGAGGGAGTAGCGAATATGCAAA 60.494 47.826 0.00 0.00 37.31 3.68
7983 8811 3.549625 GCTTTCTGTTTGGAACTCAGCAG 60.550 47.826 0.00 0.00 31.05 4.24
8057 8885 2.549992 GGCGGTGAAGTGGCATATCATA 60.550 50.000 8.18 0.00 0.00 2.15
8109 8937 2.539142 GCTGAAGATGCTGCTGAATTCG 60.539 50.000 0.00 0.00 0.00 3.34
8320 9150 9.461312 AGATGAGTACTAGCTCTTCTATTATGG 57.539 37.037 11.62 0.00 43.62 2.74
8321 9151 7.455641 TGAGTACTAGCTCTTCTATTATGGC 57.544 40.000 0.00 0.00 36.51 4.40
8482 9312 1.505353 CTGCAAGCCAAGTAGCTGC 59.495 57.895 0.00 0.00 44.11 5.25
8542 9380 0.877071 CAGCACCTAAGCCACACTTG 59.123 55.000 0.00 0.00 39.58 3.16
8574 9412 1.556238 CCCCAAACTCTACCCCTACCA 60.556 57.143 0.00 0.00 0.00 3.25
8580 9418 2.776665 ACTCTACCCCTACCATGCAAT 58.223 47.619 0.00 0.00 0.00 3.56
8599 9443 4.115516 CAATCGTGTAGCTGCAGAATACT 58.884 43.478 20.43 7.41 0.00 2.12
8601 9445 3.511699 TCGTGTAGCTGCAGAATACTTG 58.488 45.455 20.43 14.50 0.00 3.16
8624 9468 3.307762 GGACCTGTGGCTTCTCATTACTT 60.308 47.826 0.00 0.00 0.00 2.24
8724 9573 4.081420 CCTGCTCTTAGTCCTTAGAAGCAA 60.081 45.833 0.00 0.00 30.15 3.91
8731 9580 6.377712 TCTTAGTCCTTAGAAGCAAGTACTCC 59.622 42.308 0.00 0.00 28.84 3.85
8737 9586 0.175989 GAAGCAAGTACTCCCTCCGG 59.824 60.000 0.00 0.00 0.00 5.14
8740 9589 1.255667 GCAAGTACTCCCTCCGGTCA 61.256 60.000 0.00 0.00 0.00 4.02
8742 9591 1.409427 CAAGTACTCCCTCCGGTCATC 59.591 57.143 0.00 0.00 0.00 2.92
8746 9667 1.141881 CTCCCTCCGGTCATCAACG 59.858 63.158 0.00 0.00 0.00 4.10
8751 9672 1.202268 CCTCCGGTCATCAACGTCTAC 60.202 57.143 0.00 0.00 0.00 2.59
8790 9711 7.615582 ACAATATGAAACGTCAAGTCATGAT 57.384 32.000 0.00 0.00 40.97 2.45
8800 9721 4.208666 CGTCAAGTCATGATGCATCTACTG 59.791 45.833 26.32 19.58 40.97 2.74
8813 9734 6.925610 TGCATCTACTGGTATTGATTTCAC 57.074 37.500 0.00 0.00 0.00 3.18
8852 9793 4.462483 TCAAACTTTGTGAGGCTTGACTTT 59.538 37.500 1.44 0.00 30.70 2.66
8856 9797 4.816925 ACTTTGTGAGGCTTGACTTTAGAC 59.183 41.667 0.00 0.00 0.00 2.59
8861 9802 5.827797 TGTGAGGCTTGACTTTAGACAAATT 59.172 36.000 0.00 0.00 30.22 1.82
8898 9839 3.491766 AAGGACCTGAGGGAGTATCAA 57.508 47.619 2.38 0.00 36.25 2.57
8920 9861 5.036117 ACTCTTGTGTGGACATGTAGTTT 57.964 39.130 0.00 0.00 30.13 2.66
8963 9904 1.608590 CCTTTTGCTACAGGGTGTGTG 59.391 52.381 0.00 0.00 40.69 3.82
8974 9915 2.226437 CAGGGTGTGTGCTTAACATGAC 59.774 50.000 0.00 0.00 41.97 3.06
9004 9945 0.383491 CGCGATGGAATGACATTCGC 60.383 55.000 19.43 18.70 40.53 4.70
9009 9950 2.186826 GGAATGACATTCGCGGGGG 61.187 63.158 19.43 0.00 40.17 5.40
9011 9952 4.875713 ATGACATTCGCGGGGGCC 62.876 66.667 6.13 0.00 0.00 5.80
9033 9974 4.793216 CCTGTGACAAAGAAACTGTTTTCG 59.207 41.667 7.28 0.00 45.15 3.46
9052 9993 2.622942 TCGGAAGCATTTTGAAGCAACT 59.377 40.909 0.00 0.00 0.00 3.16
9087 10028 6.515272 TTTTGCCTAGACCTTGATGAATTC 57.485 37.500 0.00 0.00 0.00 2.17
9088 10029 4.842531 TGCCTAGACCTTGATGAATTCA 57.157 40.909 11.26 11.26 0.00 2.57
9089 10030 5.378230 TGCCTAGACCTTGATGAATTCAT 57.622 39.130 20.85 20.85 39.70 2.57
9093 10034 5.468072 CCTAGACCTTGATGAATTCATTCCG 59.532 44.000 21.57 12.23 36.57 4.30
9094 10035 3.629398 AGACCTTGATGAATTCATTCCGC 59.371 43.478 21.57 9.77 36.57 5.54
9103 10045 4.305769 TGAATTCATTCCGCCACAAAAAG 58.694 39.130 3.38 0.00 35.97 2.27
9217 10162 2.066000 GCTCGAGTTCACAAGAGCG 58.934 57.895 15.13 0.00 45.08 5.03
9218 10163 1.950098 GCTCGAGTTCACAAGAGCGC 61.950 60.000 15.13 0.00 45.08 5.92
9219 10164 0.664466 CTCGAGTTCACAAGAGCGCA 60.664 55.000 11.47 0.00 0.00 6.09
9220 10165 0.249280 TCGAGTTCACAAGAGCGCAA 60.249 50.000 11.47 0.00 0.00 4.85
9221 10166 0.581529 CGAGTTCACAAGAGCGCAAA 59.418 50.000 11.47 0.00 0.00 3.68
9222 10167 1.397693 CGAGTTCACAAGAGCGCAAAG 60.398 52.381 11.47 0.00 0.00 2.77
9223 10168 1.599542 GAGTTCACAAGAGCGCAAAGT 59.400 47.619 11.47 0.00 0.00 2.66
9224 10169 1.331756 AGTTCACAAGAGCGCAAAGTG 59.668 47.619 11.47 12.92 0.00 3.16
9225 10170 1.064060 GTTCACAAGAGCGCAAAGTGT 59.936 47.619 11.47 5.07 0.00 3.55
9226 10171 0.657312 TCACAAGAGCGCAAAGTGTG 59.343 50.000 20.71 20.71 40.72 3.82
9234 10179 2.171940 GCAAAGTGTGCGAGCTCG 59.828 61.111 31.37 31.37 45.10 5.03
9235 10180 2.310233 GCAAAGTGTGCGAGCTCGA 61.310 57.895 38.74 20.88 45.10 4.04
9236 10181 1.777819 CAAAGTGTGCGAGCTCGAG 59.222 57.895 38.74 12.54 43.02 4.04
9237 10182 0.941463 CAAAGTGTGCGAGCTCGAGT 60.941 55.000 38.74 18.55 43.02 4.18
9238 10183 0.249489 AAAGTGTGCGAGCTCGAGTT 60.249 50.000 38.74 23.12 43.02 3.01
9239 10184 0.664767 AAGTGTGCGAGCTCGAGTTC 60.665 55.000 38.74 23.32 43.02 3.01
9240 10185 1.371758 GTGTGCGAGCTCGAGTTCA 60.372 57.895 38.74 23.66 43.02 3.18
9241 10186 1.371758 TGTGCGAGCTCGAGTTCAC 60.372 57.895 38.74 32.01 43.02 3.18
9242 10187 1.371758 GTGCGAGCTCGAGTTCACA 60.372 57.895 38.74 22.55 43.02 3.58
9243 10188 0.939577 GTGCGAGCTCGAGTTCACAA 60.940 55.000 38.74 10.16 43.02 3.33
9244 10189 0.664466 TGCGAGCTCGAGTTCACAAG 60.664 55.000 38.74 12.64 43.02 3.16
9245 10190 0.387367 GCGAGCTCGAGTTCACAAGA 60.387 55.000 38.74 0.00 43.02 3.02
9246 10191 1.612156 CGAGCTCGAGTTCACAAGAG 58.388 55.000 32.06 7.52 43.02 2.85
9250 10195 2.430546 CTCGAGTTCACAAGAGCACT 57.569 50.000 3.62 0.00 0.00 4.40
9251 10196 2.748605 CTCGAGTTCACAAGAGCACTT 58.251 47.619 3.62 0.00 36.73 3.16
9252 10197 3.126831 CTCGAGTTCACAAGAGCACTTT 58.873 45.455 3.62 0.00 33.70 2.66
9253 10198 2.866156 TCGAGTTCACAAGAGCACTTTG 59.134 45.455 0.00 0.00 33.70 2.77
9254 10199 2.032549 CGAGTTCACAAGAGCACTTTGG 60.033 50.000 0.00 0.00 33.70 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 3.891366 CCTTAAGGCTATGGGAAACATGG 59.109 47.826 9.00 0.00 40.82 3.66
61 63 4.164413 ACTCTCCTTAAGGCTATGGGAAAC 59.836 45.833 17.32 0.00 34.44 2.78
75 77 4.017037 AGGATCAAGGTGAGACTCTCCTTA 60.017 45.833 29.48 20.56 45.52 2.69
129 132 1.742324 CTATGAGCTCCTCTGCGCCA 61.742 60.000 12.15 0.00 38.13 5.69
135 138 0.178975 CGGGGTCTATGAGCTCCTCT 60.179 60.000 12.15 0.00 0.00 3.69
210 213 3.314080 CCCAATCACAACTACAAACACGT 59.686 43.478 0.00 0.00 0.00 4.49
216 219 4.394729 GAGGTTCCCAATCACAACTACAA 58.605 43.478 0.00 0.00 0.00 2.41
235 238 0.328258 AAATTCGGTGGTCCTGGAGG 59.672 55.000 0.00 0.00 0.00 4.30
276 279 2.427453 AGCACAATTCCGTAGATCGAGT 59.573 45.455 0.00 0.00 42.86 4.18
288 291 3.010420 GAGGTGAACCCTAGCACAATTC 58.990 50.000 0.00 0.00 46.51 2.17
306 309 0.468226 TTCCCCATTCGATTCGGAGG 59.532 55.000 6.18 0.00 0.00 4.30
311 314 5.582689 AAACTCAATTCCCCATTCGATTC 57.417 39.130 0.00 0.00 0.00 2.52
340 343 3.948719 GGTTGGTGGGCGGTCAGA 61.949 66.667 0.00 0.00 0.00 3.27
390 393 1.301716 GAACTGGACGGCTGCTTCA 60.302 57.895 0.00 0.00 0.00 3.02
396 399 1.415672 TTGGAAGGAACTGGACGGCT 61.416 55.000 0.00 0.00 40.86 5.52
441 444 9.974980 ACTTTGTTAACGGTCATTTCATTTAAT 57.025 25.926 0.26 0.00 0.00 1.40
447 450 7.759465 TGTTAACTTTGTTAACGGTCATTTCA 58.241 30.769 20.93 5.20 37.62 2.69
463 466 4.335400 CCAACTTGGGCATGTTAACTTT 57.665 40.909 7.22 0.00 32.67 2.66
493 496 1.632948 GAAGAAACTACCGGCGTGGC 61.633 60.000 6.01 0.00 43.94 5.01
500 503 0.109412 AGCGACCGAAGAAACTACCG 60.109 55.000 0.00 0.00 0.00 4.02
537 541 2.500509 TTCAAACGTGACAAATGGGC 57.499 45.000 0.00 0.00 31.90 5.36
546 550 0.233590 CGCGTTGGATTCAAACGTGA 59.766 50.000 27.78 0.00 38.67 4.35
548 552 1.082366 GCGCGTTGGATTCAAACGT 60.082 52.632 23.43 0.00 37.18 3.99
561 565 2.953821 CAAACATCCAAGGCGCGT 59.046 55.556 8.43 0.00 0.00 6.01
573 577 0.621082 TGTATCCCATCCGGCAAACA 59.379 50.000 0.00 0.00 0.00 2.83
574 578 1.308998 CTGTATCCCATCCGGCAAAC 58.691 55.000 0.00 0.00 0.00 2.93
587 591 1.576356 GCAGGTGCTAGCACTGTATC 58.424 55.000 38.82 25.48 45.52 2.24
588 592 3.768633 GCAGGTGCTAGCACTGTAT 57.231 52.632 38.82 23.42 45.52 2.29
599 603 4.626081 ACGGGTGACAGCAGGTGC 62.626 66.667 9.56 0.00 42.49 5.01
606 610 0.611062 TACAGAGGGACGGGTGACAG 60.611 60.000 0.00 0.00 0.00 3.51
611 615 0.335361 ACAGATACAGAGGGACGGGT 59.665 55.000 0.00 0.00 0.00 5.28
624 628 5.105473 GCACTTGGGACTACACTTACAGATA 60.105 44.000 0.00 0.00 0.00 1.98
630 634 2.230508 CTCGCACTTGGGACTACACTTA 59.769 50.000 0.00 0.00 33.28 2.24
632 636 0.603569 CTCGCACTTGGGACTACACT 59.396 55.000 0.00 0.00 33.28 3.55
642 646 1.729472 CGTCACTACCTCTCGCACTTG 60.729 57.143 0.00 0.00 0.00 3.16
649 653 0.824759 AATGCCCGTCACTACCTCTC 59.175 55.000 0.00 0.00 0.00 3.20
654 658 0.321298 ACACCAATGCCCGTCACTAC 60.321 55.000 0.00 0.00 0.00 2.73
661 665 0.240945 GAGTTTGACACCAATGCCCG 59.759 55.000 0.00 0.00 31.46 6.13
666 670 4.647564 ATCCTCTGAGTTTGACACCAAT 57.352 40.909 3.66 0.00 31.46 3.16
677 681 2.104170 GGACCGAAGAATCCTCTGAGT 58.896 52.381 3.66 0.00 31.12 3.41
680 686 4.946478 ATTAGGACCGAAGAATCCTCTG 57.054 45.455 0.00 0.00 41.13 3.35
709 716 4.872664 ACGGAACACTAGACAAGAAAGAG 58.127 43.478 0.00 0.00 0.00 2.85
719 727 7.458409 AGTCTTTATACAACGGAACACTAGA 57.542 36.000 0.00 0.00 0.00 2.43
797 808 9.123902 GGTAATGCATGCCTCATTTATATGATA 57.876 33.333 16.68 0.00 39.94 2.15
799 810 6.947158 TGGTAATGCATGCCTCATTTATATGA 59.053 34.615 16.68 0.00 38.45 2.15
803 814 6.032956 CATGGTAATGCATGCCTCATTTAT 57.967 37.500 16.68 0.00 35.87 1.40
804 815 5.456548 CATGGTAATGCATGCCTCATTTA 57.543 39.130 16.68 2.89 35.87 1.40
817 1447 9.944663 ATTACGTATTACTTTTGCATGGTAATG 57.055 29.630 20.10 12.18 36.96 1.90
850 1480 7.308254 TGCCTCTTGCCTGTCGTAAGAAATA 62.308 44.000 0.00 0.00 45.39 1.40
860 1490 1.404391 CATGATTGCCTCTTGCCTGTC 59.596 52.381 0.00 0.00 40.16 3.51
862 1492 0.102481 GCATGATTGCCTCTTGCCTG 59.898 55.000 0.00 0.00 44.99 4.85
912 1542 2.657237 GGTCTGTCAGGGTCACGG 59.343 66.667 0.00 0.00 0.00 4.94
929 1567 2.511600 GATCTGGCGGTTGGGTCG 60.512 66.667 0.00 0.00 0.00 4.79
935 1573 0.249398 GTACTGGTGATCTGGCGGTT 59.751 55.000 0.00 0.00 0.00 4.44
949 1587 3.608506 GTGTGTCTATGTGCTTCGTACTG 59.391 47.826 0.00 0.00 0.00 2.74
950 1588 3.506455 AGTGTGTCTATGTGCTTCGTACT 59.494 43.478 0.00 0.00 0.00 2.73
970 1608 0.034863 GAGACACGGAGAGGAGGAGT 60.035 60.000 0.00 0.00 0.00 3.85
974 1612 4.745116 TGGAGACACGGAGAGGAG 57.255 61.111 0.00 0.00 33.40 3.69
1026 1669 3.381136 TGCGATTTGGGGCTTGGC 61.381 61.111 0.00 0.00 0.00 4.52
1444 2094 5.570234 TCCTAAAGAAACACCAACACAAC 57.430 39.130 0.00 0.00 0.00 3.32
1538 2188 2.094100 TGCTGGGAGGAGGAAGATAG 57.906 55.000 0.00 0.00 0.00 2.08
1577 2227 3.123050 GCCAAAATCAACCAGTGTCAAC 58.877 45.455 0.00 0.00 0.00 3.18
1581 2231 1.066908 CACGCCAAAATCAACCAGTGT 59.933 47.619 0.00 0.00 0.00 3.55
1583 2233 0.673437 CCACGCCAAAATCAACCAGT 59.327 50.000 0.00 0.00 0.00 4.00
2087 2753 1.004440 AGAACTCGGCACTTGGAGC 60.004 57.895 0.00 0.00 33.55 4.70
2274 2942 1.107945 GAGTCAGAGGGAGTGCCTAC 58.892 60.000 1.77 0.00 0.00 3.18
2310 2978 3.988379 TGGTCAGTCAAATCAAAGCAC 57.012 42.857 0.00 0.00 0.00 4.40
2355 3029 5.758784 GTCCTAGAAATGGATAAAACGGGAG 59.241 44.000 0.00 0.00 35.87 4.30
2356 3030 5.190132 TGTCCTAGAAATGGATAAAACGGGA 59.810 40.000 0.00 0.00 35.87 5.14
2357 3031 5.433526 TGTCCTAGAAATGGATAAAACGGG 58.566 41.667 0.00 0.00 35.87 5.28
2358 3032 6.598064 ACTTGTCCTAGAAATGGATAAAACGG 59.402 38.462 0.00 0.00 34.98 4.44
2359 3033 7.611213 ACTTGTCCTAGAAATGGATAAAACG 57.389 36.000 0.00 0.00 34.98 3.60
2363 3037 9.847224 GGAAATACTTGTCCTAGAAATGGATAA 57.153 33.333 0.00 0.00 35.87 1.75
2364 3038 8.148351 CGGAAATACTTGTCCTAGAAATGGATA 58.852 37.037 0.00 0.00 35.87 2.59
2365 3039 6.992715 CGGAAATACTTGTCCTAGAAATGGAT 59.007 38.462 0.00 0.00 35.87 3.41
2366 3040 6.346096 CGGAAATACTTGTCCTAGAAATGGA 58.654 40.000 0.00 0.00 0.00 3.41
2367 3041 5.527582 CCGGAAATACTTGTCCTAGAAATGG 59.472 44.000 0.00 0.00 0.00 3.16
2368 3042 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
2369 3043 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
2370 3044 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
2371 3045 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
2372 3046 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
2373 3047 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
2374 3048 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
2375 3049 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2376 3050 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2377 3051 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2378 3052 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2379 3053 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2380 3054 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2381 3055 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2382 3056 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2383 3057 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2384 3058 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2385 3059 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2386 3060 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2387 3061 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2388 3062 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
2389 3063 0.107017 TAACCTACTCCCTCCGTCCG 60.107 60.000 0.00 0.00 0.00 4.79
2390 3064 1.341383 TGTAACCTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 0.00 4.79
2391 3065 2.134789 TGTAACCTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
2392 3066 2.292061 ACATGTAACCTACTCCCTCCGT 60.292 50.000 0.00 0.00 0.00 4.69
2393 3067 2.361438 GACATGTAACCTACTCCCTCCG 59.639 54.545 0.00 0.00 0.00 4.63
2394 3068 3.132467 GTGACATGTAACCTACTCCCTCC 59.868 52.174 1.31 0.00 0.00 4.30
2395 3069 3.767673 TGTGACATGTAACCTACTCCCTC 59.232 47.826 11.00 0.00 0.00 4.30
2396 3070 3.786553 TGTGACATGTAACCTACTCCCT 58.213 45.455 11.00 0.00 0.00 4.20
2397 3071 4.546829 TTGTGACATGTAACCTACTCCC 57.453 45.455 11.00 0.00 0.00 4.30
2398 3072 7.448748 AATTTTGTGACATGTAACCTACTCC 57.551 36.000 11.00 0.00 0.00 3.85
2403 3077 9.303116 TGGTATAAATTTTGTGACATGTAACCT 57.697 29.630 11.00 0.00 0.00 3.50
2631 3305 5.012354 ACTCGAGGTAACACCCAAGAAAATA 59.988 40.000 18.41 0.00 39.75 1.40
2651 3325 6.519761 GCTACATGTGTTATTGAAACAACTCG 59.480 38.462 9.11 0.00 31.20 4.18
2663 3337 2.168521 AGACGCTGGCTACATGTGTTAT 59.831 45.455 9.11 0.00 0.00 1.89
2727 3401 6.325028 TCTGGACATTAATTTTGTTTCCCACA 59.675 34.615 0.00 0.00 0.00 4.17
2797 3471 8.131847 TGTGTATCATCCAATTTCATTTCCAA 57.868 30.769 0.00 0.00 0.00 3.53
2866 3540 6.288294 ACTGCAGAATGTAACAGTTAAGACA 58.712 36.000 23.35 0.00 40.35 3.41
3202 3876 6.147000 GCAAATTAAAGTATGTGGTGGTTTGG 59.853 38.462 0.00 0.00 0.00 3.28
3271 3945 6.753744 GCTCCCTTCTGCACAAAATAATAAAG 59.246 38.462 0.00 0.00 0.00 1.85
3638 4397 9.657419 TCTATTATGATGTTACTGCCATACATG 57.343 33.333 0.00 0.00 32.94 3.21
3667 4426 2.192175 GGGGGTAACATCCAGCGG 59.808 66.667 0.00 0.00 39.74 5.52
3769 4528 2.836981 CCAAAATAATGCCCAGGAACCA 59.163 45.455 0.00 0.00 0.00 3.67
3772 4531 3.906846 ACAACCAAAATAATGCCCAGGAA 59.093 39.130 0.00 0.00 0.00 3.36
3867 4626 4.096732 ACATTAAAATGCCTGAACGCTC 57.903 40.909 2.60 0.00 40.04 5.03
4129 4888 9.665719 TTCATAGTAGCACAAATTAGACATGAA 57.334 29.630 0.00 0.00 0.00 2.57
4163 4922 5.241506 ACAACTGAACCATGAAATACCACAG 59.758 40.000 0.00 0.00 0.00 3.66
4202 4961 3.262151 AGGGTCAAGTAAAGAGAAGGCTC 59.738 47.826 0.00 0.00 41.62 4.70
4222 4981 1.263356 TACTGGGGACGAACAAGAGG 58.737 55.000 0.00 0.00 0.00 3.69
4474 5237 5.105310 ACACACTGACAACTCTACTGAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
4475 5238 4.402793 ACACACTGACAACTCTACTGAAGT 59.597 41.667 0.00 0.00 0.00 3.01
4476 5239 4.742167 CACACACTGACAACTCTACTGAAG 59.258 45.833 0.00 0.00 0.00 3.02
4477 5240 4.159693 ACACACACTGACAACTCTACTGAA 59.840 41.667 0.00 0.00 0.00 3.02
4478 5241 3.699538 ACACACACTGACAACTCTACTGA 59.300 43.478 0.00 0.00 0.00 3.41
4479 5242 4.045104 GACACACACTGACAACTCTACTG 58.955 47.826 0.00 0.00 0.00 2.74
4480 5243 3.699538 TGACACACACTGACAACTCTACT 59.300 43.478 0.00 0.00 0.00 2.57
4481 5244 3.797256 GTGACACACACTGACAACTCTAC 59.203 47.826 0.00 0.00 45.13 2.59
4482 5245 4.041740 GTGACACACACTGACAACTCTA 57.958 45.455 0.00 0.00 45.13 2.43
4572 5356 7.556733 AGAAACACCGACACTAAAACAATAA 57.443 32.000 0.00 0.00 0.00 1.40
4573 5357 7.556733 AAGAAACACCGACACTAAAACAATA 57.443 32.000 0.00 0.00 0.00 1.90
4574 5358 6.445357 AAGAAACACCGACACTAAAACAAT 57.555 33.333 0.00 0.00 0.00 2.71
4575 5359 5.883503 AAGAAACACCGACACTAAAACAA 57.116 34.783 0.00 0.00 0.00 2.83
4576 5360 5.294060 GGTAAGAAACACCGACACTAAAACA 59.706 40.000 0.00 0.00 0.00 2.83
4577 5361 5.277490 GGGTAAGAAACACCGACACTAAAAC 60.277 44.000 0.00 0.00 36.89 2.43
4578 5362 4.815846 GGGTAAGAAACACCGACACTAAAA 59.184 41.667 0.00 0.00 36.89 1.52
4579 5363 4.101430 AGGGTAAGAAACACCGACACTAAA 59.899 41.667 0.00 0.00 36.89 1.85
4580 5364 3.642848 AGGGTAAGAAACACCGACACTAA 59.357 43.478 0.00 0.00 36.89 2.24
4581 5365 3.233507 AGGGTAAGAAACACCGACACTA 58.766 45.455 0.00 0.00 36.89 2.74
4582 5366 2.044758 AGGGTAAGAAACACCGACACT 58.955 47.619 0.00 0.00 36.89 3.55
4583 5367 2.538512 AGGGTAAGAAACACCGACAC 57.461 50.000 0.00 0.00 36.89 3.67
4584 5368 3.469739 GAAAGGGTAAGAAACACCGACA 58.530 45.455 0.00 0.00 36.89 4.35
4630 5414 4.216687 TCAACAAAACCAATATGACGGTCC 59.783 41.667 5.55 0.00 33.17 4.46
4634 5418 7.594758 AGAACAATCAACAAAACCAATATGACG 59.405 33.333 0.00 0.00 0.00 4.35
5127 5928 1.008815 TCTCTGGATGGGTCACCTGAT 59.991 52.381 0.00 0.00 37.76 2.90
5158 5959 0.593128 GTTGTTCTTGCTCGCCATGT 59.407 50.000 0.00 0.00 0.00 3.21
5200 6001 5.308825 ACTACCTTTGGTTCATGAGTTGAG 58.691 41.667 0.00 0.00 37.09 3.02
5297 6102 3.605634 TGGATTCCATGACCTGTAAACG 58.394 45.455 0.00 0.00 0.00 3.60
5326 6131 8.939201 TTTGCTCTTCATTGTAAAAATGTTCA 57.061 26.923 0.00 0.00 0.00 3.18
5470 6275 6.682746 AGTGATATAAGAGGCTTACACATCG 58.317 40.000 0.00 0.00 0.00 3.84
5496 6301 2.356135 CCCTGGTTGTACATACAGTGC 58.644 52.381 19.75 2.65 37.52 4.40
5581 6386 3.312973 CCAGCAGAATCTGAAGCAGAATC 59.687 47.826 15.38 2.97 44.04 2.52
5582 6387 3.280295 CCAGCAGAATCTGAAGCAGAAT 58.720 45.455 15.38 0.00 44.04 2.40
5583 6388 2.617276 CCCAGCAGAATCTGAAGCAGAA 60.617 50.000 15.38 0.00 44.04 3.02
5584 6389 1.065636 CCCAGCAGAATCTGAAGCAGA 60.066 52.381 15.38 0.00 44.99 4.26
5585 6390 1.339824 ACCCAGCAGAATCTGAAGCAG 60.340 52.381 15.38 0.53 36.19 4.24
5586 6391 0.694771 ACCCAGCAGAATCTGAAGCA 59.305 50.000 15.38 0.00 36.19 3.91
5587 6392 1.339438 TGACCCAGCAGAATCTGAAGC 60.339 52.381 15.38 0.00 36.19 3.86
5588 6393 2.746362 GTTGACCCAGCAGAATCTGAAG 59.254 50.000 15.38 4.94 36.19 3.02
5636 6441 6.204688 CACAACATTAGACTTTAACTCTGGCA 59.795 38.462 0.00 0.00 0.00 4.92
5819 6624 8.504812 AAACAAAAGCAAAATCACAAAAGTTG 57.495 26.923 0.00 0.00 0.00 3.16
5820 6625 9.824534 CTAAACAAAAGCAAAATCACAAAAGTT 57.175 25.926 0.00 0.00 0.00 2.66
5970 6776 6.624423 CAGGGAAAATAAACCTCATTGTGAG 58.376 40.000 0.00 0.00 43.91 3.51
6106 6912 2.490903 AGCTGAAATGATCTGTTGTGCC 59.509 45.455 0.00 0.00 0.00 5.01
6228 7034 2.036089 GGTCCTCTCTTTTGACGAGTGT 59.964 50.000 0.00 0.00 0.00 3.55
6330 7136 5.335113 CGAACTTCATCAGAAAAGCCATTCA 60.335 40.000 2.35 0.00 32.35 2.57
6370 7176 3.292936 GCAGCAGCTGTGTGCCTT 61.293 61.111 24.78 0.00 45.20 4.35
6759 7570 9.496873 TCTCAAATAAAGTAAATCCAGAAACGA 57.503 29.630 0.00 0.00 0.00 3.85
6827 7638 7.619965 TGGGGATGGAAATTTCTCAAATAAAC 58.380 34.615 17.42 0.00 0.00 2.01
6855 7666 8.426489 TCCAATTATTGTGGGTATCTACTACAC 58.574 37.037 4.15 8.03 36.73 2.90
6898 7709 2.154462 CTACTCTTGGTTGGTGCAAGG 58.846 52.381 0.00 0.00 0.00 3.61
6916 7727 3.066621 CAGTGTTGCTGTTTTTCTGCCTA 59.933 43.478 0.00 0.00 40.27 3.93
6998 7810 8.299570 GGACAATTCCGCATATTATCTGATTTT 58.700 33.333 0.00 0.00 29.98 1.82
7014 7826 7.938563 TTTTTCAAAATACTGGACAATTCCG 57.061 32.000 0.00 0.00 46.37 4.30
7068 7880 8.475331 ACACATGTATGTAAGTAGCTAACAAC 57.525 34.615 0.00 0.00 39.39 3.32
7069 7881 8.931775 CAACACATGTATGTAAGTAGCTAACAA 58.068 33.333 0.00 0.00 39.39 2.83
7070 7882 8.092068 ACAACACATGTATGTAAGTAGCTAACA 58.908 33.333 13.22 0.00 41.63 2.41
7071 7883 8.475331 ACAACACATGTATGTAAGTAGCTAAC 57.525 34.615 13.22 0.00 41.63 2.34
7072 7884 8.931775 CAACAACACATGTATGTAAGTAGCTAA 58.068 33.333 14.73 0.00 42.99 3.09
7073 7885 8.092068 ACAACAACACATGTATGTAAGTAGCTA 58.908 33.333 14.73 0.00 42.99 3.32
7074 7886 6.934645 ACAACAACACATGTATGTAAGTAGCT 59.065 34.615 14.73 0.00 42.99 3.32
7075 7887 7.129109 ACAACAACACATGTATGTAAGTAGC 57.871 36.000 14.73 0.00 42.99 3.58
7077 7889 8.714179 GCTAACAACAACACATGTATGTAAGTA 58.286 33.333 14.73 7.91 42.99 2.24
7078 7890 7.444183 AGCTAACAACAACACATGTATGTAAGT 59.556 33.333 14.73 13.40 42.99 2.24
7079 7891 7.806690 AGCTAACAACAACACATGTATGTAAG 58.193 34.615 14.73 12.91 42.99 2.34
7080 7892 7.737972 AGCTAACAACAACACATGTATGTAA 57.262 32.000 14.73 3.68 42.99 2.41
7081 7893 8.092068 AGTAGCTAACAACAACACATGTATGTA 58.908 33.333 14.73 1.79 42.99 2.29
7082 7894 6.934645 AGTAGCTAACAACAACACATGTATGT 59.065 34.615 9.93 9.93 42.99 2.29
7083 7895 7.364522 AGTAGCTAACAACAACACATGTATG 57.635 36.000 0.00 3.45 42.99 2.39
7084 7896 6.594159 GGAGTAGCTAACAACAACACATGTAT 59.406 38.462 0.00 0.00 42.99 2.29
7085 7897 5.929992 GGAGTAGCTAACAACAACACATGTA 59.070 40.000 0.00 0.00 42.99 2.29
7130 7942 7.519032 TTCGATTCCCAAAAATGTTAGAACT 57.481 32.000 0.00 0.00 0.00 3.01
7146 7958 3.944422 ACGTGTTATGCATTCGATTCC 57.056 42.857 3.54 0.00 0.00 3.01
7164 7976 6.482835 TGAAATGAGTGAACACACTAAAACG 58.517 36.000 7.68 0.00 43.70 3.60
7214 8028 2.225192 CCACCCATTGCCATCCTATCAT 60.225 50.000 0.00 0.00 0.00 2.45
7215 8029 1.145531 CCACCCATTGCCATCCTATCA 59.854 52.381 0.00 0.00 0.00 2.15
7216 8030 1.548582 CCCACCCATTGCCATCCTATC 60.549 57.143 0.00 0.00 0.00 2.08
7217 8031 0.484212 CCCACCCATTGCCATCCTAT 59.516 55.000 0.00 0.00 0.00 2.57
7218 8032 1.654137 CCCCACCCATTGCCATCCTA 61.654 60.000 0.00 0.00 0.00 2.94
7234 8048 1.074014 TCTACCCTGCCCATACCCC 60.074 63.158 0.00 0.00 0.00 4.95
7274 8088 7.827729 GGTAGAATTTTGTACCCACTGACTATT 59.172 37.037 5.54 0.00 40.24 1.73
7329 8143 1.072505 GGCCGTATGGGTATGGGTG 59.927 63.158 2.41 0.00 37.44 4.61
7365 8188 5.797051 TGTGTACTATTTGTTCTACCCACC 58.203 41.667 0.00 0.00 0.00 4.61
7474 8300 9.788960 GTGATTTCTAAATTTTGATAGTGGTCC 57.211 33.333 3.15 0.00 0.00 4.46
7515 8341 6.266330 TCATGTGACTCATCTACTCCTATTGG 59.734 42.308 0.00 0.00 34.09 3.16
7604 8431 1.684983 GTATAGCCTTGTACCAGCGGA 59.315 52.381 1.50 0.00 0.00 5.54
7609 8436 2.163810 ACGGGTATAGCCTTGTACCA 57.836 50.000 18.51 0.00 41.47 3.25
7638 8465 3.881220 CCCGTTAAGTCATGGGTAACAT 58.119 45.455 11.87 0.00 41.57 2.71
7639 8466 3.337694 CCCGTTAAGTCATGGGTAACA 57.662 47.619 11.87 0.00 38.13 2.41
7742 8569 3.182887 AGGATGGCAATTTTACCCACA 57.817 42.857 0.00 0.00 0.00 4.17
7814 8641 0.249911 ACTGTCTCGCAAAGGTGACC 60.250 55.000 0.00 0.00 0.00 4.02
7895 8723 2.752903 CAAGTATTTTGGAACGGAGGGG 59.247 50.000 0.00 0.00 0.00 4.79
7928 8756 2.355716 CGCTACTCCCTCCATTCCAAAA 60.356 50.000 0.00 0.00 0.00 2.44
7936 8764 1.618837 GCATATTCGCTACTCCCTCCA 59.381 52.381 0.00 0.00 0.00 3.86
7953 8781 4.339872 TCCAAACAGAAAGCATTTGCAT 57.660 36.364 5.20 0.00 39.27 3.96
7959 8787 3.005155 GCTGAGTTCCAAACAGAAAGCAT 59.995 43.478 0.00 0.00 34.07 3.79
7983 8811 5.649831 AGAAAAATTGAGTATGTCAGCTCCC 59.350 40.000 5.17 0.00 36.21 4.30
8057 8885 2.482839 CCAAAACGCAACCAACTTGGAT 60.483 45.455 15.14 0.00 40.96 3.41
8109 8937 8.359060 TGGTGCACAACTAAATTTTGAATAAC 57.641 30.769 20.43 0.00 0.00 1.89
8264 9092 1.078709 ACCAGACATTCGACGCAATG 58.921 50.000 14.43 14.43 39.35 2.82
8320 9150 1.194772 GCTAGTTTTGTGTGGAGACGC 59.805 52.381 0.00 0.00 42.66 5.19
8321 9151 2.479837 TGCTAGTTTTGTGTGGAGACG 58.520 47.619 0.00 0.00 0.00 4.18
8527 9365 1.074951 GCCCAAGTGTGGCTTAGGT 59.925 57.895 0.00 0.00 45.70 3.08
8558 9396 2.557869 TGCATGGTAGGGGTAGAGTTT 58.442 47.619 0.00 0.00 0.00 2.66
8559 9397 2.263895 TGCATGGTAGGGGTAGAGTT 57.736 50.000 0.00 0.00 0.00 3.01
8574 9412 1.012086 CTGCAGCTACACGATTGCAT 58.988 50.000 0.00 0.00 44.61 3.96
8580 9418 3.511699 CAAGTATTCTGCAGCTACACGA 58.488 45.455 21.18 0.00 0.00 4.35
8599 9443 1.059584 TGAGAAGCCACAGGTCCCAA 61.060 55.000 0.00 0.00 0.00 4.12
8601 9445 0.329596 AATGAGAAGCCACAGGTCCC 59.670 55.000 0.00 0.00 0.00 4.46
8624 9468 2.288666 CAAAAGAGCAGCGGCCTAATA 58.711 47.619 4.82 0.00 42.56 0.98
8737 9586 2.893637 AGCATGGTAGACGTTGATGAC 58.106 47.619 0.00 0.00 0.00 3.06
8740 9589 8.677148 ATAATTTTAGCATGGTAGACGTTGAT 57.323 30.769 4.57 0.00 0.00 2.57
8742 9591 8.822855 TGTATAATTTTAGCATGGTAGACGTTG 58.177 33.333 4.57 0.00 0.00 4.10
8790 9711 6.413892 TGTGAAATCAATACCAGTAGATGCA 58.586 36.000 0.00 0.00 0.00 3.96
8839 9780 6.959639 AAATTTGTCTAAAGTCAAGCCTCA 57.040 33.333 0.00 0.00 0.00 3.86
8880 9821 2.696187 GAGTTGATACTCCCTCAGGTCC 59.304 54.545 0.00 0.00 44.15 4.46
8890 9831 5.349817 CATGTCCACACAAGAGTTGATACTC 59.650 44.000 0.00 0.00 41.79 2.59
8898 9839 4.689612 AACTACATGTCCACACAAGAGT 57.310 40.909 0.00 0.00 35.64 3.24
8920 9861 1.680735 GCATGTGAACTCAAACCCACA 59.319 47.619 0.00 0.00 42.71 4.17
8963 9904 5.666185 GCGAAAATTTGCAGTCATGTTAAGC 60.666 40.000 0.00 0.00 37.52 3.09
8974 9915 2.261037 TCCATCGCGAAAATTTGCAG 57.739 45.000 15.24 0.00 37.43 4.41
9004 9945 2.672996 CTTTGTCACAGGCCCCCG 60.673 66.667 0.00 0.00 0.00 5.73
9009 9950 3.782889 AACAGTTTCTTTGTCACAGGC 57.217 42.857 0.00 0.00 0.00 4.85
9011 9952 4.793216 CCGAAAACAGTTTCTTTGTCACAG 59.207 41.667 0.00 0.00 40.94 3.66
9012 9953 4.456222 TCCGAAAACAGTTTCTTTGTCACA 59.544 37.500 0.00 0.00 40.94 3.58
9014 9955 5.630661 TTCCGAAAACAGTTTCTTTGTCA 57.369 34.783 0.00 0.00 40.94 3.58
9015 9956 4.499399 GCTTCCGAAAACAGTTTCTTTGTC 59.501 41.667 0.00 0.00 40.94 3.18
9016 9957 4.082463 TGCTTCCGAAAACAGTTTCTTTGT 60.082 37.500 0.00 0.00 40.94 2.83
9017 9958 4.420168 TGCTTCCGAAAACAGTTTCTTTG 58.580 39.130 0.00 0.00 40.94 2.77
9033 9974 7.386025 AGAAAATAGTTGCTTCAAAATGCTTCC 59.614 33.333 0.00 0.00 0.00 3.46
9087 10028 2.820330 ACAACTTTTTGTGGCGGAATG 58.180 42.857 0.00 0.00 44.66 2.67
9088 10029 4.616953 CTTACAACTTTTTGTGGCGGAAT 58.383 39.130 0.21 0.00 45.91 3.01
9089 10030 3.735514 GCTTACAACTTTTTGTGGCGGAA 60.736 43.478 0.21 0.00 45.91 4.30
9093 10034 4.025813 CACATGCTTACAACTTTTTGTGGC 60.026 41.667 0.00 5.58 45.91 5.01
9094 10035 5.347342 TCACATGCTTACAACTTTTTGTGG 58.653 37.500 0.00 0.00 45.91 4.17
9218 10163 0.941463 ACTCGAGCTCGCACACTTTG 60.941 55.000 30.97 14.06 39.60 2.77
9219 10164 0.249489 AACTCGAGCTCGCACACTTT 60.249 50.000 30.97 13.40 39.60 2.66
9220 10165 0.664767 GAACTCGAGCTCGCACACTT 60.665 55.000 30.97 15.75 39.60 3.16
9221 10166 1.081108 GAACTCGAGCTCGCACACT 60.081 57.895 30.97 12.96 39.60 3.55
9222 10167 1.371758 TGAACTCGAGCTCGCACAC 60.372 57.895 30.97 20.51 39.60 3.82
9223 10168 1.371758 GTGAACTCGAGCTCGCACA 60.372 57.895 30.97 21.96 39.60 4.57
9224 10169 0.939577 TTGTGAACTCGAGCTCGCAC 60.940 55.000 30.97 28.78 39.60 5.34
9225 10170 0.664466 CTTGTGAACTCGAGCTCGCA 60.664 55.000 30.97 24.22 39.60 5.10
9226 10171 0.387367 TCTTGTGAACTCGAGCTCGC 60.387 55.000 30.97 19.90 39.60 5.03
9227 10172 1.612156 CTCTTGTGAACTCGAGCTCG 58.388 55.000 30.03 30.03 41.45 5.03
9228 10173 1.336332 TGCTCTTGTGAACTCGAGCTC 60.336 52.381 13.61 11.06 46.70 4.09
9229 10174 0.676184 TGCTCTTGTGAACTCGAGCT 59.324 50.000 13.61 0.00 46.70 4.09
9230 10175 0.787183 GTGCTCTTGTGAACTCGAGC 59.213 55.000 13.61 13.85 46.74 5.03
9231 10176 2.430546 AGTGCTCTTGTGAACTCGAG 57.569 50.000 11.84 11.84 0.00 4.04
9232 10177 2.866156 CAAAGTGCTCTTGTGAACTCGA 59.134 45.455 1.02 0.00 33.79 4.04
9233 10178 2.032549 CCAAAGTGCTCTTGTGAACTCG 60.033 50.000 1.02 0.00 33.79 4.18
9234 10179 3.615849 CCAAAGTGCTCTTGTGAACTC 57.384 47.619 1.02 0.00 33.79 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.