AutoCloner

Multiple sequence alignment - TraesCS7D01G269100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G269100	chr7D	100.000	3395	0	0	1	3395	253157053	253153659	0.000000e+00	6270
1	TraesCS7D01G269100	chr7A	93.957	1688	82	10	1718	3394	266976191	266977869	0.000000e+00	2534
2	TraesCS7D01G269100	chr7A	92.390	1025	41	13	657	1653	266975081	266976096	0.000000e+00	1426
3	TraesCS7D01G269100	chr7A	95.566	654	29	0	1	654	55542906	55542253	0.000000e+00	1048
4	TraesCS7D01G269100	chr7A	92.105	114	5	2	2560	2672	27488288	27488178	1.260000e-34	158
5	TraesCS7D01G269100	chr7B	92.665	1677	84	14	1727	3394	230213621	230211975	0.000000e+00	2379
6	TraesCS7D01G269100	chr7B	92.351	889	48	7	805	1677	230214614	230213730	0.000000e+00	1247
7	TraesCS7D01G269100	chr7B	89.879	247	18	6	3041	3287	77187466	77187227	9.150000e-81	311
8	TraesCS7D01G269100	chr7B	85.654	237	34	0	2755	2991	77187701	77187465	2.020000e-62	250
9	TraesCS7D01G269100	chr7B	95.146	103	5	0	657	759	230214964	230214862	2.710000e-36	163
10	TraesCS7D01G269100	chr7B	92.000	75	4	2	2581	2654	77187786	77187713	1.670000e-18	104
11	TraesCS7D01G269100	chr6D	95.719	654	28	0	1	654	158937512	158936859	0.000000e+00	1053
12	TraesCS7D01G269100	chr6D	95.559	653	29	0	1	653	272002527	272003179	0.000000e+00	1046
13	TraesCS7D01G269100	chr5D	95.719	654	28	0	1	654	198401231	198400578	0.000000e+00	1053
14	TraesCS7D01G269100	chr5A	95.566	654	29	0	1	654	503680560	503681213	0.000000e+00	1048
15	TraesCS7D01G269100	chr5A	90.517	232	16	5	3041	3272	37615515	37615290	5.510000e-78	302
16	TraesCS7D01G269100	chr5A	86.758	219	25	2	2777	2991	37615732	37615514	1.220000e-59	241
17	TraesCS7D01G269100	chr2A	95.566	654	29	0	1	654	164566091	164565438	0.000000e+00	1048
18	TraesCS7D01G269100	chr2A	95.566	654	28	1	1	654	180336990	180337642	0.000000e+00	1046
19	TraesCS7D01G269100	chr1A	95.566	654	26	2	1	654	122433871	122434521	0.000000e+00	1044
20	TraesCS7D01G269100	chr3D	95.260	654	31	0	1	654	374438982	374438329	0.000000e+00	1037
21	TraesCS7D01G269100	chr4B	87.308	260	33	0	2754	3013	322656367	322656626	7.120000e-77	298
22	TraesCS7D01G269100	chr4B	91.525	118	5	2	2556	2672	322656259	322656372	1.260000e-34	158
23	TraesCS7D01G269100	chr4B	88.983	118	9	2	2556	2672	621863564	621863678	3.530000e-30	143
24	TraesCS7D01G269100	chr3B	96.809	94	3	0	2046	2139	380513287	380513194	1.260000e-34	158
25	TraesCS7D01G269100	chr3B	91.089	101	7	2	2556	2655	573600457	573600358	5.910000e-28	135
26	TraesCS7D01G269100	chr4A	94.059	101	4	2	2556	2655	703413235	703413136	5.870000e-33	152
27	TraesCS7D01G269100	chr6B	88.983	118	9	2	2556	2672	712640147	712640033	3.530000e-30	143

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G269100	chr7D	253153659	253157053	3394	True	6270.000000	6270	100.000000	1	3395	1	chr7D.!!$R1	3394
1	TraesCS7D01G269100	chr7A	266975081	266977869	2788	False	1980.000000	2534	93.173500	657	3394	2	chr7A.!!$F1	2737
2	TraesCS7D01G269100	chr7A	55542253	55542906	653	True	1048.000000	1048	95.566000	1	654	1	chr7A.!!$R2	653
3	TraesCS7D01G269100	chr7B	230211975	230214964	2989	True	1263.000000	2379	93.387333	657	3394	3	chr7B.!!$R2	2737
4	TraesCS7D01G269100	chr7B	77187227	77187786	559	True	221.666667	311	89.177667	2581	3287	3	chr7B.!!$R1	706
5	TraesCS7D01G269100	chr6D	158936859	158937512	653	True	1053.000000	1053	95.719000	1	654	1	chr6D.!!$R1	653
6	TraesCS7D01G269100	chr6D	272002527	272003179	652	False	1046.000000	1046	95.559000	1	653	1	chr6D.!!$F1	652
7	TraesCS7D01G269100	chr5D	198400578	198401231	653	True	1053.000000	1053	95.719000	1	654	1	chr5D.!!$R1	653
8	TraesCS7D01G269100	chr5A	503680560	503681213	653	False	1048.000000	1048	95.566000	1	654	1	chr5A.!!$F1	653
9	TraesCS7D01G269100	chr2A	164565438	164566091	653	True	1048.000000	1048	95.566000	1	654	1	chr2A.!!$R1	653
10	TraesCS7D01G269100	chr2A	180336990	180337642	652	False	1046.000000	1046	95.566000	1	654	1	chr2A.!!$F1	653
11	TraesCS7D01G269100	chr1A	122433871	122434521	650	False	1044.000000	1044	95.566000	1	654	1	chr1A.!!$F1	653
12	TraesCS7D01G269100	chr3D	374438329	374438982	653	True	1037.000000	1037	95.260000	1	654	1	chr3D.!!$R1	653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
405	406	0.104487	CGAGCAGGTGATCATGAGCT	59.896	55.0	12.92	15.68	34.61	4.09	F
1414	1640	0.250858	TGGTCACATGTCCAAGCCTG	60.251	55.0	3.83	0.00	30.55	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1900	2207	0.396974	TTGGCAACTGGGTTCTGCTT	60.397	50.000	0.00	0.0	36.32	3.91	R
2868	3177	1.153086	CCAGTACCATGGCCAGAGC	60.153	63.158	13.05	0.0	32.48	4.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
282	283	4.421365	ACGTAGTGGAAGGCGGTA	57.579	55.556	0.00	0.00	42.51	4.02
295	296	2.119029	GCGGTAGTGGGAATTGGGC	61.119	63.158	0.00	0.00	0.00	5.36
327	328	3.627732	GAGTGTTCGACAAGAGTCTGA	57.372	47.619	0.00	0.00	42.73	3.27
336	337	4.396478	TCGACAAGAGTCTGATAGTGAAGG	59.604	45.833	0.00	0.00	42.73	3.46
362	363	7.128976	GTCGATATTTCATCTTTTTGAGGAGC	58.871	38.462	0.00	0.00	36.79	4.70
398	399	1.520342	GAGTGGCGAGCAGGTGATC	60.520	63.158	0.00	0.00	0.00	2.92
405	406	0.104487	CGAGCAGGTGATCATGAGCT	59.896	55.000	12.92	15.68	34.61	4.09
408	409	3.129871	GAGCAGGTGATCATGAGCTTAC	58.870	50.000	12.92	2.59	31.61	2.34
633	634	1.707989	TCAAGTCTTGCCCATACCCAA	59.292	47.619	7.78	0.00	0.00	4.12
745	748	1.174712	ACGATGCCATGCTTATGCCC	61.175	55.000	0.00	0.00	38.71	5.36
748	751	1.457823	ATGCCATGCTTATGCCCGTG	61.458	55.000	0.00	0.00	38.71	4.94
767	770	3.254166	CGTGGAATCAATCAATCATCCCC	59.746	47.826	0.00	0.00	0.00	4.81
768	771	4.477249	GTGGAATCAATCAATCATCCCCT	58.523	43.478	0.00	0.00	0.00	4.79
771	774	2.936919	TCAATCAATCATCCCCTCCG	57.063	50.000	0.00	0.00	0.00	4.63
838	1043	9.354673	CAATATTAACATACCCTGTCTCCAAAT	57.645	33.333	0.00	0.00	36.98	2.32
848	1053	4.530875	CCTGTCTCCAAATAATTCCAGCT	58.469	43.478	0.00	0.00	0.00	4.24
994	1207	5.072741	AGCATAGCTTTGTTCCTTGAAGAA	58.927	37.500	6.03	0.00	33.89	2.52
995	1208	5.182760	AGCATAGCTTTGTTCCTTGAAGAAG	59.817	40.000	6.03	0.00	33.89	2.85
996	1209	5.182001	GCATAGCTTTGTTCCTTGAAGAAGA	59.818	40.000	6.03	0.00	0.00	2.87
997	1210	6.127786	GCATAGCTTTGTTCCTTGAAGAAGAT	60.128	38.462	6.03	0.00	0.00	2.40
1017	1230	1.489481	AGATGAACCGCATGAGGAGA	58.511	50.000	23.45	5.43	37.34	3.71
1020	1233	2.787473	TGAACCGCATGAGGAGAATT	57.213	45.000	23.45	5.57	34.73	2.17
1181	1394	0.392998	GACGCCATCCAAGGTGACAT	60.393	55.000	0.00	0.00	41.75	3.06
1210	1425	1.401552	CTCTCTCTCTCGTCCTTGCAG	59.598	57.143	0.00	0.00	0.00	4.41
1214	1429	2.750166	TCTCTCTCGTCCTTGCAGTTAG	59.250	50.000	0.00	0.00	0.00	2.34
1215	1430	2.490115	CTCTCTCGTCCTTGCAGTTAGT	59.510	50.000	0.00	0.00	0.00	2.24
1223	1438	4.598062	GTCCTTGCAGTTAGTGTTGTTTC	58.402	43.478	0.00	0.00	0.00	2.78
1224	1439	3.311322	TCCTTGCAGTTAGTGTTGTTTCG	59.689	43.478	0.00	0.00	0.00	3.46
1283	1509	3.766591	TGCACCGAACCAATATTTCCATT	59.233	39.130	0.00	0.00	0.00	3.16
1414	1640	0.250858	TGGTCACATGTCCAAGCCTG	60.251	55.000	3.83	0.00	30.55	4.85
1565	1798	2.758979	ACATTAGAGGGAGTACGTGTGG	59.241	50.000	0.00	0.00	0.00	4.17
1589	1822	4.432741	GCCCAAGACCCCTCCAGC	62.433	72.222	0.00	0.00	0.00	4.85
1680	1931	2.028020	GGAGCTACCCATCCCGATTAAG	60.028	54.545	0.00	0.00	0.00	1.85
1700	1951	3.560636	GCCTTCAGCTCCAAAGGTATA	57.439	47.619	16.56	0.00	43.34	1.47
1716	1967	7.713942	CCAAAGGTATACTAATCGCTAAACCTT	59.286	37.037	2.25	0.00	45.55	3.50
1721	1972	8.747471	GGTATACTAATCGCTAAACCTTATCCT	58.253	37.037	2.25	0.00	0.00	3.24
1722	1973	9.786105	GTATACTAATCGCTAAACCTTATCCTC	57.214	37.037	0.00	0.00	0.00	3.71
1723	1974	5.770417	ACTAATCGCTAAACCTTATCCTCG	58.230	41.667	0.00	0.00	0.00	4.63
1732	2030	1.906574	ACCTTATCCTCGGCAAACTGA	59.093	47.619	0.00	0.00	0.00	3.41
1780	2078	2.041620	TCTTGGCTAGGGCAGTTCATTT	59.958	45.455	0.00	0.00	39.75	2.32
1865	2163	2.437359	GAGCCAGCCTTGCACGAT	60.437	61.111	0.00	0.00	0.00	3.73
1876	2174	0.817654	TTGCACGATCGACAGGAGAT	59.182	50.000	24.34	0.00	0.00	2.75
1882	2180	1.069296	CGATCGACAGGAGATCAGCTC	60.069	57.143	10.26	0.00	43.35	4.09
1913	2220	1.073897	GCAGGAAGCAGAACCCAGT	59.926	57.895	0.00	0.00	44.79	4.00
1966	2273	2.974698	GCAAGGCACACTCGCACT	60.975	61.111	0.00	0.00	0.00	4.40
1967	2274	2.546494	GCAAGGCACACTCGCACTT	61.546	57.895	0.00	0.00	0.00	3.16
2022	2329	2.924185	CAGCAGTGCAAGTACAGCT	58.076	52.632	19.20	2.59	43.09	4.24
2228	2535	0.835941	AAGGAGCTGCAGGTAGATGG	59.164	55.000	20.22	0.00	0.00	3.51
2235	2542	1.216064	TGCAGGTAGATGGCAGGAAT	58.784	50.000	0.00	0.00	32.95	3.01
2242	2549	4.846367	AGGTAGATGGCAGGAATAATGCTA	59.154	41.667	0.00	0.00	43.35	3.49
2345	2652	2.751436	GCCAGCGAAGGGAATGCA	60.751	61.111	0.00	0.00	0.00	3.96
2363	2670	2.555325	TGCAAAGAACAGATGGCAAGAG	59.445	45.455	0.00	0.00	0.00	2.85
2399	2706	2.291741	GGTTTGCAGACCAGTGAAGAAG	59.708	50.000	21.05	0.00	39.57	2.85
2402	2709	2.838736	TGCAGACCAGTGAAGAAGAAC	58.161	47.619	0.00	0.00	0.00	3.01
2403	2710	1.795286	GCAGACCAGTGAAGAAGAACG	59.205	52.381	0.00	0.00	0.00	3.95
2404	2711	2.545952	GCAGACCAGTGAAGAAGAACGA	60.546	50.000	0.00	0.00	0.00	3.85
2413	2720	3.860536	GTGAAGAAGAACGAGCCTATCAC	59.139	47.826	0.00	0.00	0.00	3.06
2440	2749	9.619316	TTGACATGTAGTATATGTTTGCAAAAC	57.381	29.630	14.67	8.16	38.78	2.43
2507	2816	6.018669	AGACTTCTTTCTGTTGATTTGTCGAC	60.019	38.462	9.11	9.11	0.00	4.20
2724	3033	0.959372	AAGCATCAGACAGCACTGCC	60.959	55.000	0.00	0.00	37.75	4.85
2853	3162	1.987807	ATGGAGGAGTGCCGATTGGG	61.988	60.000	0.00	0.00	39.96	4.12
3022	3331	9.003112	CATTCTTAATCAAGTTTCTAACGCATG	57.997	33.333	0.00	0.00	36.23	4.06
3191	3500	7.132213	TGTGAAAAAGAAAAGCATCTTCTACG	58.868	34.615	0.68	0.00	38.69	3.51
3204	3513	3.785486	TCTTCTACGATGAAGCATGTGG	58.215	45.455	14.14	0.00	42.15	4.17
3273	3582	8.821147	TTTAAACGTAATCTTCACTAAGCAGA	57.179	30.769	0.00	0.00	32.36	4.26
3380	3689	9.815306	ATAGATCTAGCCAGAATAGTAAGACAA	57.185	33.333	8.70	0.00	33.50	3.18
3382	3691	9.153479	AGATCTAGCCAGAATAGTAAGACAAAT	57.847	33.333	0.00	0.00	33.50	2.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	5.586155	TTGAAGTGGGTGGGTATAGAAAA	57.414	39.130	0.00	0.00	0.00	2.29
282	283	1.754234	GCGATGCCCAATTCCCACT	60.754	57.895	0.00	0.00	0.00	4.00
295	296	1.203928	GAACACTCGATCCAGCGATG	58.796	55.000	0.00	0.00	39.85	3.84
327	328	7.546250	AGATGAAATATCGACCCTTCACTAT	57.454	36.000	6.96	0.00	31.00	2.12
336	337	7.553881	TCCTCAAAAAGATGAAATATCGACC	57.446	36.000	0.00	0.00	0.00	4.79
362	363	5.569630	GCCACTCCTTATATGTCCTATGTGG	60.570	48.000	0.00	0.00	42.65	4.17
405	406	6.927416	TCCTTAAACAAGTCATAGCTCGTAA	58.073	36.000	0.00	0.00	0.00	3.18
408	409	6.910536	ATTCCTTAAACAAGTCATAGCTCG	57.089	37.500	0.00	0.00	0.00	5.03
654	655	4.355437	CCTGTGCTCGTCATTTCTAGTAG	58.645	47.826	0.00	0.00	0.00	2.57
655	656	3.130516	CCCTGTGCTCGTCATTTCTAGTA	59.869	47.826	0.00	0.00	0.00	1.82
667	668	2.513026	CTTGTCCTCCCCTGTGCTCG	62.513	65.000	0.00	0.00	0.00	5.03
745	748	3.254166	GGGGATGATTGATTGATTCCACG	59.746	47.826	0.00	0.00	0.00	4.94
748	751	4.085009	GGAGGGGATGATTGATTGATTCC	58.915	47.826	0.00	0.00	0.00	3.01
767	770	0.165944	GTCGATGCAACCAAACGGAG	59.834	55.000	0.00	0.00	0.00	4.63
768	771	1.231958	GGTCGATGCAACCAAACGGA	61.232	55.000	0.98	0.00	36.75	4.69
771	774	0.887933	ATGGGTCGATGCAACCAAAC	59.112	50.000	8.29	0.00	38.62	2.93
994	1207	3.234353	TCCTCATGCGGTTCATCTATCT	58.766	45.455	0.77	0.00	31.79	1.98
995	1208	3.256879	TCTCCTCATGCGGTTCATCTATC	59.743	47.826	0.77	0.00	31.79	2.08
996	1209	3.234353	TCTCCTCATGCGGTTCATCTAT	58.766	45.455	0.77	0.00	31.79	1.98
997	1210	2.666317	TCTCCTCATGCGGTTCATCTA	58.334	47.619	0.77	0.00	31.79	1.98
1017	1230	2.038651	TTGCCCATCCCCGCAATT	59.961	55.556	0.00	0.00	39.96	2.32
1020	1233	4.113815	CTCTTGCCCATCCCCGCA	62.114	66.667	0.00	0.00	0.00	5.69
1056	1269	2.297597	CTCGTCCTTGTCCTTCTGAACT	59.702	50.000	0.00	0.00	0.00	3.01
1181	1394	3.632333	ACGAGAGAGAGAGAGAGAGAGA	58.368	50.000	0.00	0.00	0.00	3.10
1210	1425	4.972201	TGTTCCAACGAAACAACACTAAC	58.028	39.130	0.00	0.00	33.86	2.34
1214	1429	2.596862	GCTTGTTCCAACGAAACAACAC	59.403	45.455	0.00	0.00	40.64	3.32
1215	1430	2.229062	TGCTTGTTCCAACGAAACAACA	59.771	40.909	0.00	0.25	40.64	3.33
1223	1438	3.716601	AGGATTTTTGCTTGTTCCAACG	58.283	40.909	0.00	0.00	0.00	4.10
1224	1439	6.526674	CGTATAGGATTTTTGCTTGTTCCAAC	59.473	38.462	0.00	0.00	0.00	3.77
1234	1455	8.149661	CGTATAACGTACGTATAGGATTTTTGC	58.850	37.037	23.12	1.44	36.74	3.68
1283	1509	0.928505	AATGGCCATGACCCATGAGA	59.071	50.000	21.63	0.00	43.81	3.27
1414	1640	2.446802	ATCTCTCTTCCCCGGGGC	60.447	66.667	36.68	0.00	34.68	5.80
1496	1726	3.320826	GCCAAATGAACCTACCACTTGTT	59.679	43.478	0.00	0.00	0.00	2.83
1501	1731	2.514803	AGTGCCAAATGAACCTACCAC	58.485	47.619	0.00	0.00	0.00	4.16
1565	1798	1.606601	GGGGTCTTGGGCCTGAAAC	60.607	63.158	4.53	0.00	0.00	2.78
1589	1822	1.273327	GGGAAGGAAACATTGGTGCAG	59.727	52.381	0.00	0.00	0.00	4.41
1680	1931	2.426842	ATACCTTTGGAGCTGAAGGC	57.573	50.000	16.26	0.00	45.03	4.35
1690	1941	7.215085	AGGTTTAGCGATTAGTATACCTTTGG	58.785	38.462	0.00	0.00	30.93	3.28
1694	1945	8.747471	GGATAAGGTTTAGCGATTAGTATACCT	58.253	37.037	0.00	0.00	36.37	3.08
1700	1951	5.278858	CCGAGGATAAGGTTTAGCGATTAGT	60.279	44.000	0.00	0.00	0.00	2.24
1716	1967	3.334691	CAAACTCAGTTTGCCGAGGATA	58.665	45.455	17.27	0.00	44.59	2.59
1732	2030	8.527567	TTCGAAAATTTGTTCAACTTCAAACT	57.472	26.923	0.00	0.00	36.58	2.66
1747	2045	5.624509	GCCCTAGCCAAGATTTCGAAAATTT	60.625	40.000	15.66	9.35	0.00	1.82
1749	2047	3.381590	GCCCTAGCCAAGATTTCGAAAAT	59.618	43.478	15.66	3.82	0.00	1.82
1780	2078	2.038814	TTGGTCGCCTCTGTCTTGCA	62.039	55.000	0.00	0.00	0.00	4.08
1895	2202	0.538287	AACTGGGTTCTGCTTCCTGC	60.538	55.000	0.00	0.00	43.25	4.85
1900	2207	0.396974	TTGGCAACTGGGTTCTGCTT	60.397	50.000	0.00	0.00	36.32	3.91
1908	2215	3.548488	TTGGCTTTGGCAACTGGG	58.452	55.556	0.00	0.00	42.98	4.45
1966	2273	2.095466	GGCTTGCATTTGCGTAGTACAA	60.095	45.455	0.38	0.00	45.83	2.41
1967	2274	1.466950	GGCTTGCATTTGCGTAGTACA	59.533	47.619	0.38	0.00	45.83	2.90
2007	2314	2.155732	CGTGTTAGCTGTACTTGCACTG	59.844	50.000	12.49	0.00	32.75	3.66
2008	2315	2.404215	CGTGTTAGCTGTACTTGCACT	58.596	47.619	12.49	0.00	32.75	4.40
2022	2329	2.149803	CTGGCGTCTCCACCGTGTTA	62.150	60.000	0.00	0.00	40.72	2.41
2043	2350	2.437895	GCCGTGTAAGGGGCTTCC	60.438	66.667	0.00	0.00	45.93	3.46
2206	2513	1.222936	CTACCTGCAGCTCCTTGGG	59.777	63.158	8.66	0.00	0.00	4.12
2228	2535	2.678336	GCCGGTATAGCATTATTCCTGC	59.322	50.000	1.90	0.00	39.97	4.85
2235	2542	1.349688	CCCTTGGCCGGTATAGCATTA	59.650	52.381	1.90	0.00	0.00	1.90
2310	2617	3.910490	GCGGTTTTGCTGGTGCCA	61.910	61.111	0.00	0.00	38.71	4.92
2334	2641	4.381292	CCATCTGTTCTTTGCATTCCCTTC	60.381	45.833	0.00	0.00	0.00	3.46
2345	2652	1.808945	CGCTCTTGCCATCTGTTCTTT	59.191	47.619	0.00	0.00	35.36	2.52
2399	2706	3.232213	TGTCAAGTGATAGGCTCGTTC	57.768	47.619	0.00	0.00	0.00	3.95
2402	2709	3.170791	ACATGTCAAGTGATAGGCTCG	57.829	47.619	0.00	0.00	0.00	5.03
2403	2710	5.269505	ACTACATGTCAAGTGATAGGCTC	57.730	43.478	0.00	0.00	0.00	4.70
2404	2711	6.985653	ATACTACATGTCAAGTGATAGGCT	57.014	37.500	0.00	0.00	0.00	4.58
2413	2720	9.838975	TTTTGCAAACATATACTACATGTCAAG	57.161	29.630	12.39	0.00	35.58	3.02
2868	3177	1.153086	CCAGTACCATGGCCAGAGC	60.153	63.158	13.05	0.00	32.48	4.09
3022	3331	6.018589	TCTATCATGTACTACAGCATGCTC	57.981	41.667	19.68	6.00	42.53	4.26
3191	3500	4.024893	CACCGTTATACCACATGCTTCATC	60.025	45.833	0.00	0.00	0.00	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.