Multiple sequence alignment - TraesCS7D01G268800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G268800 chr7D 100.000 4441 0 0 1 4441 252545224 252549664 0.000000e+00 8202.0
1 TraesCS7D01G268800 chr7B 92.087 2161 113 28 729 2859 229827467 229829599 0.000000e+00 2990.0
2 TraesCS7D01G268800 chr7B 94.821 811 36 4 2899 3707 229829592 229830398 0.000000e+00 1260.0
3 TraesCS7D01G268800 chr7B 88.113 673 55 12 1 663 229826678 229827335 0.000000e+00 776.0
4 TraesCS7D01G268800 chr7B 93.933 511 27 3 3705 4211 229830431 229830941 0.000000e+00 769.0
5 TraesCS7D01G268800 chr7A 95.010 1042 36 5 1810 2850 267567859 267566833 0.000000e+00 1622.0
6 TraesCS7D01G268800 chr7A 89.655 1044 80 21 2901 3931 267566826 267565798 0.000000e+00 1304.0
7 TraesCS7D01G268800 chr7A 88.490 1086 53 26 788 1824 267569009 267567947 0.000000e+00 1247.0
8 TraesCS7D01G268800 chr7A 89.072 668 64 6 4 663 267569838 267569172 0.000000e+00 821.0
9 TraesCS7D01G268800 chr7A 93.631 157 10 0 4055 4211 267564581 267564425 7.430000e-58 235.0
10 TraesCS7D01G268800 chr3D 90.977 133 12 0 4218 4350 127299964 127299832 3.530000e-41 180.0
11 TraesCS7D01G268800 chr3A 92.727 55 2 2 2852 2905 161458326 161458273 1.320000e-10 78.7
12 TraesCS7D01G268800 chr3A 94.231 52 1 2 2852 2902 303756840 303756790 1.320000e-10 78.7
13 TraesCS7D01G268800 chr5D 94.000 50 3 0 2853 2902 464690676 464690725 4.760000e-10 76.8
14 TraesCS7D01G268800 chr5D 93.878 49 3 0 2852 2900 48034749 48034797 1.710000e-09 75.0
15 TraesCS7D01G268800 chr5B 94.000 50 3 0 2853 2902 571616777 571616728 4.760000e-10 76.8
16 TraesCS7D01G268800 chr4D 95.652 46 2 0 2855 2900 321804815 321804860 1.710000e-09 75.0
17 TraesCS7D01G268800 chr2B 92.453 53 2 2 2852 2903 18809647 18809698 1.710000e-09 75.0
18 TraesCS7D01G268800 chr2A 92.308 52 4 0 2852 2903 690329372 690329423 1.710000e-09 75.0
19 TraesCS7D01G268800 chr1B 94.000 50 2 1 2852 2901 591112921 591112873 1.710000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G268800 chr7D 252545224 252549664 4440 False 8202.00 8202 100.0000 1 4441 1 chr7D.!!$F1 4440
1 TraesCS7D01G268800 chr7B 229826678 229830941 4263 False 1448.75 2990 92.2385 1 4211 4 chr7B.!!$F1 4210
2 TraesCS7D01G268800 chr7A 267564425 267569838 5413 True 1045.80 1622 91.1716 4 4211 5 chr7A.!!$R1 4207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 809 0.033366 TGCTTGCGCTGACAGACTTA 59.967 50.0 9.73 0.0 36.97 2.24 F
892 984 0.537143 AAACAGCGAACCTGCATCCA 60.537 50.0 0.00 0.0 45.78 3.41 F
1259 1410 0.753867 GAAGTGCTAGGACTAGGGGC 59.246 60.0 18.05 1.8 33.87 5.80 F
1781 1937 0.977395 ACTCACCCAGCAGTACCTTC 59.023 55.0 0.00 0.0 0.00 3.46 F
3104 3364 0.453282 CACGACATCAAAGGCGCAAG 60.453 55.0 10.83 0.0 43.44 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1757 1.171308 ACATGCATGCCTCACTTGAC 58.829 50.000 26.53 0.0 0.00 3.18 R
2811 3067 2.287644 CACAAGTTCACAATGCAGTCGA 59.712 45.455 0.00 0.0 0.00 4.20 R
3104 3364 0.179000 AGATGTCATTCCGGCTCCAC 59.821 55.000 0.00 0.0 0.00 4.02 R
3283 3543 0.312729 CCTGTTTAAACGGTGTGCCC 59.687 55.000 22.54 0.0 33.38 5.36 R
4353 5799 0.036732 TGGAGAGCACTTCCGCAATT 59.963 50.000 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 6.465321 GGCAACCTAGTAATAGGCATAGGAAA 60.465 42.308 16.11 0.00 40.90 3.13
49 51 5.320277 AGGCATAGGAAATAATCAGGAAGC 58.680 41.667 0.00 0.00 0.00 3.86
53 55 6.349944 GCATAGGAAATAATCAGGAAGCCATG 60.350 42.308 0.00 0.00 0.00 3.66
54 56 5.134725 AGGAAATAATCAGGAAGCCATGT 57.865 39.130 0.00 0.00 0.00 3.21
74 76 3.257393 GTCAGTGATCTGTGCCTGTTAG 58.743 50.000 0.00 0.00 41.91 2.34
75 77 2.005451 CAGTGATCTGTGCCTGTTAGC 58.995 52.381 0.00 0.00 36.97 3.09
81 83 5.355350 GTGATCTGTGCCTGTTAGCTTTATT 59.645 40.000 0.00 0.00 0.00 1.40
94 96 6.889722 TGTTAGCTTTATTTAGCCAGTTCCAT 59.110 34.615 0.00 0.00 42.20 3.41
104 106 6.942532 TTAGCCAGTTCCATAATTGCTAAG 57.057 37.500 0.00 0.00 0.00 2.18
123 125 9.725019 TTGCTAAGAAACTTGAATATCTTCAGA 57.275 29.630 0.00 0.00 42.19 3.27
162 164 8.862325 ACCAATAATAATGTGTTTCAGACTCA 57.138 30.769 0.00 0.00 36.31 3.41
168 170 2.771089 TGTGTTTCAGACTCAGATGCC 58.229 47.619 0.00 0.00 0.00 4.40
174 176 1.003580 TCAGACTCAGATGCCCCAAAC 59.996 52.381 0.00 0.00 0.00 2.93
175 177 1.067295 AGACTCAGATGCCCCAAACA 58.933 50.000 0.00 0.00 0.00 2.83
182 186 1.203038 AGATGCCCCAAACATGACACA 60.203 47.619 0.00 0.00 0.00 3.72
183 187 0.968405 ATGCCCCAAACATGACACAC 59.032 50.000 0.00 0.00 0.00 3.82
197 202 4.418013 TGACACACAAACACTTCAGTTG 57.582 40.909 0.00 0.00 0.00 3.16
206 211 7.504238 ACACAAACACTTCAGTTGGGATAATTA 59.496 33.333 0.00 0.00 0.00 1.40
208 213 8.739972 ACAAACACTTCAGTTGGGATAATTATC 58.260 33.333 15.88 15.88 0.00 1.75
210 215 9.533831 AAACACTTCAGTTGGGATAATTATCTT 57.466 29.630 21.80 4.22 33.28 2.40
211 216 8.738645 ACACTTCAGTTGGGATAATTATCTTC 57.261 34.615 21.80 15.50 33.28 2.87
212 217 8.328758 ACACTTCAGTTGGGATAATTATCTTCA 58.671 33.333 21.80 17.41 33.28 3.02
213 218 9.347240 CACTTCAGTTGGGATAATTATCTTCAT 57.653 33.333 21.80 7.27 33.28 2.57
214 219 9.927081 ACTTCAGTTGGGATAATTATCTTCATT 57.073 29.630 21.80 11.00 33.28 2.57
217 222 9.793259 TCAGTTGGGATAATTATCTTCATTACC 57.207 33.333 21.80 14.11 33.28 2.85
218 223 9.573166 CAGTTGGGATAATTATCTTCATTACCA 57.427 33.333 21.80 16.12 33.28 3.25
244 254 4.978083 CATTCCTGCAGCAGAACTATTT 57.022 40.909 24.90 0.00 32.44 1.40
258 268 9.039870 AGCAGAACTATTTTCTGAATTATCTCG 57.960 33.333 16.41 0.00 46.57 4.04
270 280 8.026341 TCTGAATTATCTCGCATGATGATTTC 57.974 34.615 0.00 0.00 34.30 2.17
277 287 4.448732 TCTCGCATGATGATTTCGTAATGG 59.551 41.667 0.00 0.00 0.00 3.16
284 294 6.421377 TGATGATTTCGTAATGGACACTTG 57.579 37.500 0.00 0.00 0.00 3.16
333 343 1.227853 GGCACTTGGAGAACACGGT 60.228 57.895 0.00 0.00 0.00 4.83
342 352 1.933853 GGAGAACACGGTGTCATATGC 59.066 52.381 15.09 0.00 0.00 3.14
459 469 1.012841 GGCTGCGGATGAAGAAGAAG 58.987 55.000 0.00 0.00 0.00 2.85
540 550 0.607620 AGCTGAACTGAGGCAGTCTC 59.392 55.000 0.00 0.00 44.62 3.36
545 555 0.398318 AACTGAGGCAGTCTCCAACC 59.602 55.000 0.00 0.00 44.62 3.77
548 558 1.376553 GAGGCAGTCTCCAACCTGC 60.377 63.158 3.12 3.12 41.60 4.85
550 560 2.031163 GCAGTCTCCAACCTGCGT 59.969 61.111 0.00 0.00 33.04 5.24
553 563 2.432628 GTCTCCAACCTGCGTCCG 60.433 66.667 0.00 0.00 0.00 4.79
635 645 1.872773 TTGTTTTGGAAACCCTGCCT 58.127 45.000 1.53 0.00 0.00 4.75
672 689 6.817396 TCAAATCACGAAATACTGTTCTTCG 58.183 36.000 17.20 17.20 45.65 3.79
685 719 3.764466 CTTCGCCCCTCGCTCTGT 61.764 66.667 0.00 0.00 38.27 3.41
686 720 3.708220 CTTCGCCCCTCGCTCTGTC 62.708 68.421 0.00 0.00 38.27 3.51
691 725 1.984570 CCCCTCGCTCTGTCCTTCA 60.985 63.158 0.00 0.00 0.00 3.02
715 749 1.878775 GATCTGCCGTGCTTTGCTT 59.121 52.632 0.00 0.00 0.00 3.91
716 750 0.455633 GATCTGCCGTGCTTTGCTTG 60.456 55.000 0.00 0.00 0.00 4.01
717 751 2.482296 ATCTGCCGTGCTTTGCTTGC 62.482 55.000 0.00 0.00 0.00 4.01
718 752 4.627447 TGCCGTGCTTTGCTTGCG 62.627 61.111 0.00 0.00 0.00 4.85
721 755 3.095278 CGTGCTTTGCTTGCGCTG 61.095 61.111 9.73 2.28 38.62 5.18
722 756 2.332514 GTGCTTTGCTTGCGCTGA 59.667 55.556 9.73 0.00 37.87 4.26
725 804 1.728426 GCTTTGCTTGCGCTGACAG 60.728 57.895 9.73 0.00 36.97 3.51
729 808 0.815213 TTGCTTGCGCTGACAGACTT 60.815 50.000 9.73 0.00 36.97 3.01
730 809 0.033366 TGCTTGCGCTGACAGACTTA 59.967 50.000 9.73 0.00 36.97 2.24
780 859 2.125350 GGTTCTCTGGGCGCTCTG 60.125 66.667 9.62 8.76 0.00 3.35
814 893 4.836125 TTTGCCAGATTTGAGAACACTC 57.164 40.909 0.00 0.00 0.00 3.51
847 927 4.303086 GCAATTCTTCATGCTGCATACT 57.697 40.909 15.78 0.00 39.46 2.12
848 928 4.042398 GCAATTCTTCATGCTGCATACTG 58.958 43.478 15.78 5.01 39.46 2.74
849 929 4.201980 GCAATTCTTCATGCTGCATACTGA 60.202 41.667 15.78 7.61 39.46 3.41
850 930 5.271625 CAATTCTTCATGCTGCATACTGAC 58.728 41.667 15.78 0.00 0.00 3.51
851 931 3.900966 TCTTCATGCTGCATACTGACT 57.099 42.857 15.78 0.00 0.00 3.41
852 932 3.528532 TCTTCATGCTGCATACTGACTG 58.471 45.455 15.78 2.61 0.00 3.51
892 984 0.537143 AAACAGCGAACCTGCATCCA 60.537 50.000 0.00 0.00 45.78 3.41
1076 1206 2.125512 CTCCACCTACCGCAGCAC 60.126 66.667 0.00 0.00 0.00 4.40
1079 1209 2.434884 CACCTACCGCAGCACCAG 60.435 66.667 0.00 0.00 0.00 4.00
1224 1363 0.803768 CTCCTCACACAGAATCGCCG 60.804 60.000 0.00 0.00 0.00 6.46
1243 1394 1.201855 CGCTCGTTTTGCTAGCAGAAG 60.202 52.381 20.12 13.86 35.85 2.85
1244 1395 1.801178 GCTCGTTTTGCTAGCAGAAGT 59.199 47.619 20.12 0.00 36.11 3.01
1258 1409 2.035632 CAGAAGTGCTAGGACTAGGGG 58.964 57.143 18.05 4.28 33.87 4.79
1259 1410 0.753867 GAAGTGCTAGGACTAGGGGC 59.246 60.000 18.05 1.80 33.87 5.80
1260 1411 1.043673 AAGTGCTAGGACTAGGGGCG 61.044 60.000 18.05 0.00 33.87 6.13
1261 1412 2.838225 TGCTAGGACTAGGGGCGC 60.838 66.667 0.00 0.00 33.87 6.53
1281 1432 1.176527 CCCATGAATTGGTCTTGCGT 58.823 50.000 0.00 0.00 44.83 5.24
1320 1471 2.435805 AGATCACGCATAGGGTTCATGT 59.564 45.455 0.00 0.00 0.00 3.21
1330 1481 1.586154 GGGTTCATGTTGTCTGCGGG 61.586 60.000 0.00 0.00 0.00 6.13
1332 1483 1.453155 GTTCATGTTGTCTGCGGGAT 58.547 50.000 0.00 0.00 0.00 3.85
1356 1507 4.998051 TCAGCTAGAAATTGGGGAAAAGT 58.002 39.130 0.00 0.00 0.00 2.66
1397 1548 3.687572 TCTGGTCGTTTCTATCGCTAC 57.312 47.619 0.00 0.00 0.00 3.58
1402 1553 3.246226 GGTCGTTTCTATCGCTACGAGTA 59.754 47.826 0.00 0.00 42.83 2.59
1422 1573 3.456380 ACCCATACCATTTGCTTCTGT 57.544 42.857 0.00 0.00 0.00 3.41
1440 1591 5.281693 TCTGTTGCTATGATTTGTTCACG 57.718 39.130 0.00 0.00 37.11 4.35
1596 1752 5.588240 CATCTTTGTGCTGCAATGTGATAT 58.412 37.500 2.77 0.00 36.89 1.63
1597 1753 4.989044 TCTTTGTGCTGCAATGTGATATG 58.011 39.130 2.77 0.00 36.89 1.78
1598 1754 4.701171 TCTTTGTGCTGCAATGTGATATGA 59.299 37.500 2.77 0.00 36.89 2.15
1599 1755 5.358725 TCTTTGTGCTGCAATGTGATATGAT 59.641 36.000 2.77 0.00 36.89 2.45
1600 1756 6.543100 TCTTTGTGCTGCAATGTGATATGATA 59.457 34.615 2.77 0.00 36.89 2.15
1601 1757 5.934935 TGTGCTGCAATGTGATATGATAG 57.065 39.130 2.77 0.00 0.00 2.08
1602 1758 5.370679 TGTGCTGCAATGTGATATGATAGT 58.629 37.500 2.77 0.00 0.00 2.12
1616 1772 2.910199 TGATAGTCAAGTGAGGCATGC 58.090 47.619 9.90 9.90 0.00 4.06
1781 1937 0.977395 ACTCACCCAGCAGTACCTTC 59.023 55.000 0.00 0.00 0.00 3.46
1827 1983 9.967451 TGATATTTCTTCTGTGGTTATTTGGTA 57.033 29.630 0.00 0.00 0.00 3.25
1986 2240 7.441836 AGGTTTGTTCTTCTGTTGTTTTTCTT 58.558 30.769 0.00 0.00 0.00 2.52
2042 2296 4.675510 GAATTTGGTGTGGCATACTCATG 58.324 43.478 14.20 0.00 35.07 3.07
2164 2418 8.641541 ACTTTTACAAGATTCCATGTCAAATGT 58.358 29.630 0.00 0.00 33.72 2.71
2541 2795 7.890127 TGGACATTCTTTATTTCTGATTCCTGT 59.110 33.333 0.00 0.00 0.00 4.00
2606 2861 7.195374 AGAAGTATGGCCATCTTTTACAGTA 57.805 36.000 24.80 0.00 0.00 2.74
2666 2921 2.289694 ACTCTGGCAGCAAAATACGAGT 60.290 45.455 10.34 1.77 0.00 4.18
2698 2953 4.775253 GGTGAAGTAAAATGGATGGGGAAA 59.225 41.667 0.00 0.00 0.00 3.13
2768 3024 5.051307 TCACTAAACGACTGATTCAACAACG 60.051 40.000 0.00 0.00 0.00 4.10
2811 3067 3.130280 TGGCATTCACGCTATGATGAT 57.870 42.857 0.00 0.00 37.11 2.45
2813 3069 2.093310 GGCATTCACGCTATGATGATCG 59.907 50.000 0.00 0.00 37.11 3.69
2816 3072 3.990318 TTCACGCTATGATGATCGACT 57.010 42.857 0.00 0.00 37.11 4.18
2839 3095 3.427528 GCATTGTGAACTTGTGATTGCAG 59.572 43.478 0.00 0.00 0.00 4.41
2850 3106 5.049405 ACTTGTGATTGCAGCTGTACTTTAC 60.049 40.000 16.64 8.52 0.00 2.01
2851 3107 3.751175 TGTGATTGCAGCTGTACTTTACC 59.249 43.478 16.64 0.00 0.00 2.85
2852 3108 3.751175 GTGATTGCAGCTGTACTTTACCA 59.249 43.478 16.64 0.00 0.00 3.25
2853 3109 3.751175 TGATTGCAGCTGTACTTTACCAC 59.249 43.478 16.64 0.00 0.00 4.16
2854 3110 3.485463 TTGCAGCTGTACTTTACCACT 57.515 42.857 16.64 0.00 0.00 4.00
2855 3111 4.610605 TTGCAGCTGTACTTTACCACTA 57.389 40.909 16.64 0.00 0.00 2.74
2856 3112 3.921677 TGCAGCTGTACTTTACCACTAC 58.078 45.455 16.64 0.00 0.00 2.73
2857 3113 3.576982 TGCAGCTGTACTTTACCACTACT 59.423 43.478 16.64 0.00 0.00 2.57
2858 3114 4.039973 TGCAGCTGTACTTTACCACTACTT 59.960 41.667 16.64 0.00 0.00 2.24
2859 3115 4.995487 GCAGCTGTACTTTACCACTACTTT 59.005 41.667 16.64 0.00 0.00 2.66
2860 3116 6.161381 GCAGCTGTACTTTACCACTACTTTA 58.839 40.000 16.64 0.00 0.00 1.85
2861 3117 6.310711 GCAGCTGTACTTTACCACTACTTTAG 59.689 42.308 16.64 0.00 0.00 1.85
2862 3118 7.376615 CAGCTGTACTTTACCACTACTTTAGT 58.623 38.462 5.25 0.00 40.28 2.24
2876 3132 6.756221 ACTACTTTAGTGATCCAAAACGTCT 58.244 36.000 0.00 0.00 37.69 4.18
2877 3133 7.215085 ACTACTTTAGTGATCCAAAACGTCTT 58.785 34.615 0.00 0.00 37.69 3.01
2878 3134 8.362639 ACTACTTTAGTGATCCAAAACGTCTTA 58.637 33.333 0.00 0.00 37.69 2.10
2879 3135 9.367444 CTACTTTAGTGATCCAAAACGTCTTAT 57.633 33.333 0.00 0.00 0.00 1.73
2881 3137 9.715121 ACTTTAGTGATCCAAAACGTCTTATAA 57.285 29.630 0.00 0.00 0.00 0.98
2885 3141 8.617290 AGTGATCCAAAACGTCTTATAAAAGT 57.383 30.769 0.00 0.00 34.13 2.66
2886 3142 9.063615 AGTGATCCAAAACGTCTTATAAAAGTT 57.936 29.630 0.00 0.00 34.13 2.66
2887 3143 9.673454 GTGATCCAAAACGTCTTATAAAAGTTT 57.327 29.630 0.00 6.73 36.70 2.66
2895 3151 8.543862 AACGTCTTATAAAAGTTTACAGAGGG 57.456 34.615 13.70 5.91 31.70 4.30
2896 3152 7.899973 ACGTCTTATAAAAGTTTACAGAGGGA 58.100 34.615 13.70 0.00 31.70 4.20
2897 3153 8.033626 ACGTCTTATAAAAGTTTACAGAGGGAG 58.966 37.037 13.70 0.00 31.70 4.30
3015 3275 3.055167 TGCTGCTGCTTTCTCAGGTTATA 60.055 43.478 17.00 0.00 40.48 0.98
3104 3364 0.453282 CACGACATCAAAGGCGCAAG 60.453 55.000 10.83 0.00 43.44 4.01
3118 3378 1.377202 GCAAGTGGAGCCGGAATGA 60.377 57.895 5.05 0.00 0.00 2.57
3159 3419 1.442526 GGATCCATGCGGCTGAACTG 61.443 60.000 6.95 0.00 0.00 3.16
3283 3543 5.406175 TGGTAGAAAACACGGTTTAGATTCG 59.594 40.000 3.01 0.00 0.00 3.34
3318 3578 1.414181 ACAGGATTGCGGTCTAGGATG 59.586 52.381 0.00 0.00 0.00 3.51
3326 3586 1.988063 CGGTCTAGGATGATGATGCG 58.012 55.000 0.00 0.00 0.00 4.73
3327 3587 1.270826 CGGTCTAGGATGATGATGCGT 59.729 52.381 0.00 0.00 0.00 5.24
3334 3594 5.879777 TCTAGGATGATGATGCGTTTTTCAA 59.120 36.000 0.00 0.00 0.00 2.69
3455 3717 4.891168 TGATAGGAACTGCATGCAATCATT 59.109 37.500 22.88 13.30 41.52 2.57
3583 3845 6.004574 GGTTTGATCTGGAGGTTAAAGTCTT 58.995 40.000 0.00 0.00 0.00 3.01
3584 3846 6.149640 GGTTTGATCTGGAGGTTAAAGTCTTC 59.850 42.308 0.00 0.00 0.00 2.87
3624 3888 1.686355 CCACTTGTTGGTTGGCTACA 58.314 50.000 0.80 0.00 41.10 2.74
3644 3908 7.042321 GGCTACATTGTAATGATGCTACGTTTA 60.042 37.037 11.29 0.00 39.67 2.01
3661 3925 1.823169 TTAAGAGGAAGCACCGCGGT 61.823 55.000 28.70 28.70 43.25 5.68
3673 3937 2.642254 CCGCGGTGGTCTTCAGGTA 61.642 63.158 19.50 0.00 0.00 3.08
3723 4022 4.472833 AGAAACCATAGTCTTGAGGAGCAT 59.527 41.667 0.00 0.00 0.00 3.79
3725 4024 6.328672 AGAAACCATAGTCTTGAGGAGCATAT 59.671 38.462 0.00 0.00 0.00 1.78
3766 4065 1.717645 GCATTCTTTTGCACTGAAGCG 59.282 47.619 0.00 0.00 42.31 4.68
3959 4260 3.499338 AGGAATGTCAAGCCAAACATGA 58.501 40.909 0.00 0.00 36.28 3.07
3975 4276 7.201661 GCCAAACATGACGACCTACAAATAATA 60.202 37.037 0.00 0.00 0.00 0.98
3976 4277 8.836413 CCAAACATGACGACCTACAAATAATAT 58.164 33.333 0.00 0.00 0.00 1.28
4058 4362 8.432805 CCCTTGTAATAACCATCTCTCATTAGT 58.567 37.037 0.00 0.00 0.00 2.24
4184 5630 5.280011 CCTCTAAACTTTCTAGGACCAGCAA 60.280 44.000 0.00 0.00 0.00 3.91
4197 5643 0.676151 CCAGCAACTCCTCCTCAAGC 60.676 60.000 0.00 0.00 0.00 4.01
4203 5649 3.333804 CAACTCCTCCTCAAGCTCTTTC 58.666 50.000 0.00 0.00 0.00 2.62
4211 5657 4.392940 TCCTCAAGCTCTTTCCTTCTTTG 58.607 43.478 0.00 0.00 0.00 2.77
4212 5658 4.103153 TCCTCAAGCTCTTTCCTTCTTTGA 59.897 41.667 0.00 0.00 0.00 2.69
4213 5659 4.455190 CCTCAAGCTCTTTCCTTCTTTGAG 59.545 45.833 4.75 4.75 0.00 3.02
4214 5660 5.041191 TCAAGCTCTTTCCTTCTTTGAGT 57.959 39.130 0.00 0.00 0.00 3.41
4215 5661 5.440610 TCAAGCTCTTTCCTTCTTTGAGTT 58.559 37.500 0.00 0.00 0.00 3.01
4216 5662 5.529060 TCAAGCTCTTTCCTTCTTTGAGTTC 59.471 40.000 0.00 0.00 0.00 3.01
4217 5663 5.041191 AGCTCTTTCCTTCTTTGAGTTCA 57.959 39.130 0.00 0.00 0.00 3.18
4218 5664 5.062528 AGCTCTTTCCTTCTTTGAGTTCAG 58.937 41.667 0.00 0.00 0.00 3.02
4219 5665 4.215185 GCTCTTTCCTTCTTTGAGTTCAGG 59.785 45.833 0.00 0.00 0.00 3.86
4220 5666 4.137543 TCTTTCCTTCTTTGAGTTCAGGC 58.862 43.478 0.00 0.00 0.00 4.85
4221 5667 3.576078 TTCCTTCTTTGAGTTCAGGCA 57.424 42.857 0.00 0.00 0.00 4.75
4222 5668 3.795688 TCCTTCTTTGAGTTCAGGCAT 57.204 42.857 0.00 0.00 0.00 4.40
4223 5669 3.415212 TCCTTCTTTGAGTTCAGGCATG 58.585 45.455 0.00 0.00 0.00 4.06
4224 5670 3.072915 TCCTTCTTTGAGTTCAGGCATGA 59.927 43.478 0.00 0.00 0.00 3.07
4225 5671 4.015084 CCTTCTTTGAGTTCAGGCATGAT 58.985 43.478 0.03 0.00 34.73 2.45
4226 5672 4.096081 CCTTCTTTGAGTTCAGGCATGATC 59.904 45.833 0.03 0.69 34.73 2.92
4227 5673 4.564782 TCTTTGAGTTCAGGCATGATCT 57.435 40.909 11.52 11.52 38.03 2.75
4228 5674 4.511527 TCTTTGAGTTCAGGCATGATCTC 58.488 43.478 25.33 25.33 46.13 2.75
4241 5687 2.967599 TGATCTCATGAGGGTGTTCG 57.032 50.000 22.42 0.00 0.00 3.95
4242 5688 2.456577 TGATCTCATGAGGGTGTTCGA 58.543 47.619 22.42 1.02 0.00 3.71
4243 5689 2.166459 TGATCTCATGAGGGTGTTCGAC 59.834 50.000 22.42 4.89 0.00 4.20
4244 5690 0.895530 TCTCATGAGGGTGTTCGACC 59.104 55.000 22.42 0.00 45.28 4.79
4258 5704 4.885157 GACCGTTTCGACTCCCTC 57.115 61.111 0.00 0.00 0.00 4.30
4259 5705 2.265096 GACCGTTTCGACTCCCTCT 58.735 57.895 0.00 0.00 0.00 3.69
4260 5706 1.457346 GACCGTTTCGACTCCCTCTA 58.543 55.000 0.00 0.00 0.00 2.43
4261 5707 1.132073 GACCGTTTCGACTCCCTCTAC 59.868 57.143 0.00 0.00 0.00 2.59
4262 5708 1.271817 ACCGTTTCGACTCCCTCTACT 60.272 52.381 0.00 0.00 0.00 2.57
4263 5709 1.401199 CCGTTTCGACTCCCTCTACTC 59.599 57.143 0.00 0.00 0.00 2.59
4264 5710 2.082231 CGTTTCGACTCCCTCTACTCA 58.918 52.381 0.00 0.00 0.00 3.41
4265 5711 2.486982 CGTTTCGACTCCCTCTACTCAA 59.513 50.000 0.00 0.00 0.00 3.02
4266 5712 3.670091 CGTTTCGACTCCCTCTACTCAAC 60.670 52.174 0.00 0.00 0.00 3.18
4267 5713 2.873094 TCGACTCCCTCTACTCAACA 57.127 50.000 0.00 0.00 0.00 3.33
4268 5714 3.150458 TCGACTCCCTCTACTCAACAA 57.850 47.619 0.00 0.00 0.00 2.83
4269 5715 3.493334 TCGACTCCCTCTACTCAACAAA 58.507 45.455 0.00 0.00 0.00 2.83
4270 5716 4.087182 TCGACTCCCTCTACTCAACAAAT 58.913 43.478 0.00 0.00 0.00 2.32
4271 5717 4.158025 TCGACTCCCTCTACTCAACAAATC 59.842 45.833 0.00 0.00 0.00 2.17
4272 5718 4.158764 CGACTCCCTCTACTCAACAAATCT 59.841 45.833 0.00 0.00 0.00 2.40
4273 5719 5.413309 ACTCCCTCTACTCAACAAATCTG 57.587 43.478 0.00 0.00 0.00 2.90
4274 5720 4.187694 CTCCCTCTACTCAACAAATCTGC 58.812 47.826 0.00 0.00 0.00 4.26
4275 5721 3.582647 TCCCTCTACTCAACAAATCTGCA 59.417 43.478 0.00 0.00 0.00 4.41
4276 5722 4.225942 TCCCTCTACTCAACAAATCTGCAT 59.774 41.667 0.00 0.00 0.00 3.96
4277 5723 4.946157 CCCTCTACTCAACAAATCTGCATT 59.054 41.667 0.00 0.00 0.00 3.56
4278 5724 5.163683 CCCTCTACTCAACAAATCTGCATTG 60.164 44.000 0.00 0.00 0.00 2.82
4279 5725 5.163683 CCTCTACTCAACAAATCTGCATTGG 60.164 44.000 3.73 0.00 32.02 3.16
4280 5726 3.308438 ACTCAACAAATCTGCATTGGC 57.692 42.857 3.73 0.00 41.68 4.52
4281 5727 2.895404 ACTCAACAAATCTGCATTGGCT 59.105 40.909 3.73 0.00 41.91 4.75
4282 5728 3.057033 ACTCAACAAATCTGCATTGGCTC 60.057 43.478 3.73 0.00 41.91 4.70
4283 5729 2.892215 TCAACAAATCTGCATTGGCTCA 59.108 40.909 3.73 0.00 41.91 4.26
4284 5730 3.321396 TCAACAAATCTGCATTGGCTCAA 59.679 39.130 3.73 0.00 41.91 3.02
4285 5731 3.308438 ACAAATCTGCATTGGCTCAAC 57.692 42.857 3.73 0.00 41.91 3.18
4286 5732 2.895404 ACAAATCTGCATTGGCTCAACT 59.105 40.909 3.73 0.00 41.91 3.16
4287 5733 3.057033 ACAAATCTGCATTGGCTCAACTC 60.057 43.478 3.73 0.00 41.91 3.01
4288 5734 1.376543 ATCTGCATTGGCTCAACTCG 58.623 50.000 0.00 0.00 41.91 4.18
4289 5735 0.674581 TCTGCATTGGCTCAACTCGG 60.675 55.000 0.00 0.00 41.91 4.63
4290 5736 2.262471 CTGCATTGGCTCAACTCGGC 62.262 60.000 0.00 0.00 41.91 5.54
4291 5737 2.334946 GCATTGGCTCAACTCGGCA 61.335 57.895 0.00 0.00 36.96 5.69
4293 5739 4.569279 TTGGCTCAACTCGGCAAA 57.431 50.000 0.00 0.00 42.85 3.68
4294 5740 3.034924 TTGGCTCAACTCGGCAAAT 57.965 47.368 0.00 0.00 42.85 2.32
4295 5741 2.192664 TTGGCTCAACTCGGCAAATA 57.807 45.000 0.00 0.00 42.85 1.40
4296 5742 2.418368 TGGCTCAACTCGGCAAATAT 57.582 45.000 0.00 0.00 33.73 1.28
4297 5743 2.288666 TGGCTCAACTCGGCAAATATC 58.711 47.619 0.00 0.00 33.73 1.63
4298 5744 2.288666 GGCTCAACTCGGCAAATATCA 58.711 47.619 0.00 0.00 0.00 2.15
4299 5745 2.880890 GGCTCAACTCGGCAAATATCAT 59.119 45.455 0.00 0.00 0.00 2.45
4300 5746 3.304257 GGCTCAACTCGGCAAATATCATG 60.304 47.826 0.00 0.00 0.00 3.07
4301 5747 3.851105 GCTCAACTCGGCAAATATCATGC 60.851 47.826 5.16 5.16 43.08 4.06
4302 5748 3.544684 TCAACTCGGCAAATATCATGCT 58.455 40.909 11.82 0.00 43.34 3.79
4303 5749 3.947196 TCAACTCGGCAAATATCATGCTT 59.053 39.130 11.82 0.00 43.34 3.91
4304 5750 4.035558 TCAACTCGGCAAATATCATGCTTC 59.964 41.667 11.82 0.00 43.34 3.86
4305 5751 3.813443 ACTCGGCAAATATCATGCTTCT 58.187 40.909 11.82 0.00 43.34 2.85
4306 5752 3.562973 ACTCGGCAAATATCATGCTTCTG 59.437 43.478 11.82 4.90 43.34 3.02
4307 5753 2.291465 TCGGCAAATATCATGCTTCTGC 59.709 45.455 11.82 0.00 43.34 4.26
4308 5754 2.606308 CGGCAAATATCATGCTTCTGCC 60.606 50.000 11.82 12.82 43.34 4.85
4309 5755 2.606308 GGCAAATATCATGCTTCTGCCG 60.606 50.000 11.82 0.00 43.34 5.69
4310 5756 2.291465 GCAAATATCATGCTTCTGCCGA 59.709 45.455 6.27 0.00 40.64 5.54
4311 5757 3.243168 GCAAATATCATGCTTCTGCCGAA 60.243 43.478 6.27 0.00 40.64 4.30
4320 5766 3.935993 TTCTGCCGAAGAAGGAAGG 57.064 52.632 0.00 0.00 40.09 3.46
4321 5767 0.324943 TTCTGCCGAAGAAGGAAGGG 59.675 55.000 0.00 0.00 40.09 3.95
4322 5768 1.078143 CTGCCGAAGAAGGAAGGGG 60.078 63.158 0.00 0.00 33.08 4.79
4323 5769 2.438614 GCCGAAGAAGGAAGGGGC 60.439 66.667 0.00 0.00 0.00 5.80
4324 5770 3.077907 CCGAAGAAGGAAGGGGCA 58.922 61.111 0.00 0.00 0.00 5.36
4325 5771 1.078143 CCGAAGAAGGAAGGGGCAG 60.078 63.158 0.00 0.00 0.00 4.85
4326 5772 1.553690 CCGAAGAAGGAAGGGGCAGA 61.554 60.000 0.00 0.00 0.00 4.26
4327 5773 0.107945 CGAAGAAGGAAGGGGCAGAG 60.108 60.000 0.00 0.00 0.00 3.35
4328 5774 1.280457 GAAGAAGGAAGGGGCAGAGA 58.720 55.000 0.00 0.00 0.00 3.10
4329 5775 1.209261 GAAGAAGGAAGGGGCAGAGAG 59.791 57.143 0.00 0.00 0.00 3.20
4330 5776 0.620121 AGAAGGAAGGGGCAGAGAGG 60.620 60.000 0.00 0.00 0.00 3.69
4331 5777 1.617839 AAGGAAGGGGCAGAGAGGG 60.618 63.158 0.00 0.00 0.00 4.30
4332 5778 2.285743 GGAAGGGGCAGAGAGGGT 60.286 66.667 0.00 0.00 0.00 4.34
4333 5779 2.371259 GGAAGGGGCAGAGAGGGTC 61.371 68.421 0.00 0.00 0.00 4.46
4334 5780 2.685380 AAGGGGCAGAGAGGGTCG 60.685 66.667 0.00 0.00 0.00 4.79
4339 5785 4.500116 GCAGAGAGGGTCGCCGAC 62.500 72.222 9.15 9.15 0.00 4.79
4340 5786 2.752238 CAGAGAGGGTCGCCGACT 60.752 66.667 17.76 0.00 32.47 4.18
4341 5787 1.451567 CAGAGAGGGTCGCCGACTA 60.452 63.158 17.76 0.00 32.47 2.59
4342 5788 0.820074 CAGAGAGGGTCGCCGACTAT 60.820 60.000 17.76 5.80 32.47 2.12
4343 5789 0.763652 AGAGAGGGTCGCCGACTATA 59.236 55.000 17.76 0.00 32.47 1.31
4344 5790 1.158434 GAGAGGGTCGCCGACTATAG 58.842 60.000 17.76 0.00 32.47 1.31
4345 5791 0.763652 AGAGGGTCGCCGACTATAGA 59.236 55.000 17.76 0.00 32.47 1.98
4346 5792 0.873721 GAGGGTCGCCGACTATAGAC 59.126 60.000 17.76 0.00 32.47 2.59
4348 5794 1.955285 GGTCGCCGACTATAGACCC 59.045 63.158 17.76 0.00 45.39 4.46
4349 5795 0.820891 GGTCGCCGACTATAGACCCA 60.821 60.000 17.76 0.00 45.39 4.51
4350 5796 0.592148 GTCGCCGACTATAGACCCAG 59.408 60.000 10.56 0.00 0.00 4.45
4351 5797 0.471191 TCGCCGACTATAGACCCAGA 59.529 55.000 6.78 0.00 0.00 3.86
4352 5798 1.073444 TCGCCGACTATAGACCCAGAT 59.927 52.381 6.78 0.00 0.00 2.90
4353 5799 2.303890 TCGCCGACTATAGACCCAGATA 59.696 50.000 6.78 0.00 0.00 1.98
4354 5800 3.079578 CGCCGACTATAGACCCAGATAA 58.920 50.000 6.78 0.00 0.00 1.75
4355 5801 3.695060 CGCCGACTATAGACCCAGATAAT 59.305 47.826 6.78 0.00 0.00 1.28
4356 5802 4.158025 CGCCGACTATAGACCCAGATAATT 59.842 45.833 6.78 0.00 0.00 1.40
4357 5803 5.411781 GCCGACTATAGACCCAGATAATTG 58.588 45.833 6.78 0.00 0.00 2.32
4358 5804 5.411781 CCGACTATAGACCCAGATAATTGC 58.588 45.833 6.78 0.00 0.00 3.56
4359 5805 5.096169 CGACTATAGACCCAGATAATTGCG 58.904 45.833 6.78 0.00 0.00 4.85
4360 5806 5.407407 ACTATAGACCCAGATAATTGCGG 57.593 43.478 6.78 0.00 0.00 5.69
4361 5807 5.084519 ACTATAGACCCAGATAATTGCGGA 58.915 41.667 6.78 0.00 0.00 5.54
4362 5808 4.974645 ATAGACCCAGATAATTGCGGAA 57.025 40.909 0.00 0.00 0.00 4.30
4363 5809 3.199880 AGACCCAGATAATTGCGGAAG 57.800 47.619 0.00 0.00 0.00 3.46
4364 5810 2.505819 AGACCCAGATAATTGCGGAAGT 59.494 45.455 0.00 0.00 0.00 3.01
4365 5811 2.614057 GACCCAGATAATTGCGGAAGTG 59.386 50.000 0.00 0.00 0.00 3.16
4366 5812 1.334869 CCCAGATAATTGCGGAAGTGC 59.665 52.381 0.00 0.00 0.00 4.40
4367 5813 2.292267 CCAGATAATTGCGGAAGTGCT 58.708 47.619 0.00 0.00 35.36 4.40
4368 5814 2.289002 CCAGATAATTGCGGAAGTGCTC 59.711 50.000 0.00 0.00 35.36 4.26
4369 5815 3.201290 CAGATAATTGCGGAAGTGCTCT 58.799 45.455 0.00 0.00 35.36 4.09
4370 5816 3.247173 CAGATAATTGCGGAAGTGCTCTC 59.753 47.826 0.00 0.00 35.36 3.20
4371 5817 2.024176 TAATTGCGGAAGTGCTCTCC 57.976 50.000 0.00 0.00 35.36 3.71
4372 5818 0.036732 AATTGCGGAAGTGCTCTCCA 59.963 50.000 0.00 0.00 35.36 3.86
4373 5819 0.254178 ATTGCGGAAGTGCTCTCCAT 59.746 50.000 0.00 0.00 35.36 3.41
4374 5820 0.036732 TTGCGGAAGTGCTCTCCATT 59.963 50.000 0.00 0.00 35.36 3.16
4375 5821 0.901827 TGCGGAAGTGCTCTCCATTA 59.098 50.000 0.00 0.00 35.36 1.90
4376 5822 1.134699 TGCGGAAGTGCTCTCCATTAG 60.135 52.381 0.00 0.00 35.36 1.73
4377 5823 1.808133 GCGGAAGTGCTCTCCATTAGG 60.808 57.143 0.00 0.00 0.00 2.69
4378 5824 1.808133 CGGAAGTGCTCTCCATTAGGC 60.808 57.143 0.00 0.00 33.74 3.93
4379 5825 1.488393 GGAAGTGCTCTCCATTAGGCT 59.512 52.381 0.00 0.00 33.74 4.58
4380 5826 2.092699 GGAAGTGCTCTCCATTAGGCTT 60.093 50.000 0.00 0.00 33.74 4.35
4381 5827 2.706339 AGTGCTCTCCATTAGGCTTG 57.294 50.000 0.00 0.00 33.74 4.01
4382 5828 1.211457 AGTGCTCTCCATTAGGCTTGG 59.789 52.381 0.00 0.00 35.45 3.61
4383 5829 0.107017 TGCTCTCCATTAGGCTTGGC 60.107 55.000 0.04 0.00 34.06 4.52
4401 5847 3.826282 CCCCCACATGTCCACTCT 58.174 61.111 0.00 0.00 0.00 3.24
4402 5848 1.604378 CCCCCACATGTCCACTCTC 59.396 63.158 0.00 0.00 0.00 3.20
4403 5849 1.200760 CCCCCACATGTCCACTCTCA 61.201 60.000 0.00 0.00 0.00 3.27
4404 5850 0.914644 CCCCACATGTCCACTCTCAT 59.085 55.000 0.00 0.00 0.00 2.90
4405 5851 1.134280 CCCCACATGTCCACTCTCATC 60.134 57.143 0.00 0.00 0.00 2.92
4406 5852 1.836166 CCCACATGTCCACTCTCATCT 59.164 52.381 0.00 0.00 0.00 2.90
4407 5853 2.158986 CCCACATGTCCACTCTCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
4408 5854 2.158986 CCACATGTCCACTCTCATCTCC 60.159 54.545 0.00 0.00 0.00 3.71
4409 5855 2.498885 CACATGTCCACTCTCATCTCCA 59.501 50.000 0.00 0.00 0.00 3.86
4410 5856 3.055602 CACATGTCCACTCTCATCTCCAA 60.056 47.826 0.00 0.00 0.00 3.53
4411 5857 3.055530 ACATGTCCACTCTCATCTCCAAC 60.056 47.826 0.00 0.00 0.00 3.77
4412 5858 1.546029 TGTCCACTCTCATCTCCAACG 59.454 52.381 0.00 0.00 0.00 4.10
4413 5859 0.532573 TCCACTCTCATCTCCAACGC 59.467 55.000 0.00 0.00 0.00 4.84
4414 5860 0.534412 CCACTCTCATCTCCAACGCT 59.466 55.000 0.00 0.00 0.00 5.07
4415 5861 1.470632 CCACTCTCATCTCCAACGCTC 60.471 57.143 0.00 0.00 0.00 5.03
4416 5862 1.203287 CACTCTCATCTCCAACGCTCA 59.797 52.381 0.00 0.00 0.00 4.26
4417 5863 1.476085 ACTCTCATCTCCAACGCTCAG 59.524 52.381 0.00 0.00 0.00 3.35
4418 5864 1.747924 CTCTCATCTCCAACGCTCAGA 59.252 52.381 0.00 0.00 0.00 3.27
4419 5865 1.747924 TCTCATCTCCAACGCTCAGAG 59.252 52.381 0.00 0.00 0.00 3.35
4420 5866 1.476085 CTCATCTCCAACGCTCAGAGT 59.524 52.381 0.00 0.00 0.00 3.24
4421 5867 1.203287 TCATCTCCAACGCTCAGAGTG 59.797 52.381 9.60 9.60 0.00 3.51
4422 5868 0.108424 ATCTCCAACGCTCAGAGTGC 60.108 55.000 11.13 0.00 0.00 4.40
4423 5869 1.005748 CTCCAACGCTCAGAGTGCA 60.006 57.895 11.13 0.00 0.00 4.57
4424 5870 0.601046 CTCCAACGCTCAGAGTGCAA 60.601 55.000 11.13 0.00 0.00 4.08
4425 5871 0.179059 TCCAACGCTCAGAGTGCAAA 60.179 50.000 11.13 0.00 0.00 3.68
4426 5872 0.662619 CCAACGCTCAGAGTGCAAAA 59.337 50.000 11.13 0.00 0.00 2.44
4427 5873 1.267806 CCAACGCTCAGAGTGCAAAAT 59.732 47.619 11.13 0.00 0.00 1.82
4428 5874 2.313234 CAACGCTCAGAGTGCAAAATG 58.687 47.619 11.13 0.00 0.00 2.32
4429 5875 1.597742 ACGCTCAGAGTGCAAAATGT 58.402 45.000 11.13 0.00 0.00 2.71
4430 5876 1.265095 ACGCTCAGAGTGCAAAATGTG 59.735 47.619 11.13 0.00 0.00 3.21
4431 5877 1.400629 CGCTCAGAGTGCAAAATGTGG 60.401 52.381 0.00 0.00 0.00 4.17
4432 5878 1.881973 GCTCAGAGTGCAAAATGTGGA 59.118 47.619 0.00 0.00 0.00 4.02
4433 5879 2.095364 GCTCAGAGTGCAAAATGTGGAG 60.095 50.000 0.00 0.00 0.00 3.86
4434 5880 3.144506 CTCAGAGTGCAAAATGTGGAGT 58.855 45.455 0.00 0.00 33.14 3.85
4435 5881 4.318332 CTCAGAGTGCAAAATGTGGAGTA 58.682 43.478 0.00 0.00 30.03 2.59
4436 5882 4.910195 TCAGAGTGCAAAATGTGGAGTAT 58.090 39.130 0.00 0.00 30.03 2.12
4437 5883 4.937620 TCAGAGTGCAAAATGTGGAGTATC 59.062 41.667 0.00 0.00 30.03 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 9.959721 TTCCTGATTATTTCCTATGCCTATTAC 57.040 33.333 0.00 0.00 0.00 1.89
27 29 4.460731 GGCTTCCTGATTATTTCCTATGCC 59.539 45.833 0.00 0.00 0.00 4.40
37 39 4.164796 TCACTGACATGGCTTCCTGATTAT 59.835 41.667 0.00 0.00 0.00 1.28
40 42 1.911357 TCACTGACATGGCTTCCTGAT 59.089 47.619 0.00 0.00 0.00 2.90
45 47 2.676839 CACAGATCACTGACATGGCTTC 59.323 50.000 0.00 0.00 46.03 3.86
49 51 1.065636 AGGCACAGATCACTGACATGG 60.066 52.381 0.00 0.00 46.03 3.66
53 55 2.175878 AACAGGCACAGATCACTGAC 57.824 50.000 0.00 0.00 46.03 3.51
54 56 2.354103 GCTAACAGGCACAGATCACTGA 60.354 50.000 0.00 0.00 46.03 3.41
74 76 7.169813 GCAATTATGGAACTGGCTAAATAAAGC 59.830 37.037 0.00 0.00 41.99 3.51
75 77 8.416329 AGCAATTATGGAACTGGCTAAATAAAG 58.584 33.333 0.00 0.00 0.00 1.85
81 83 6.658849 TCTTAGCAATTATGGAACTGGCTAA 58.341 36.000 0.00 0.00 39.30 3.09
116 118 5.163205 TGGTCCAGAATTTGAACTCTGAAGA 60.163 40.000 3.94 0.00 41.38 2.87
130 132 9.253832 TGAAACACATTATTATTGGTCCAGAAT 57.746 29.630 6.39 6.39 0.00 2.40
151 153 1.003580 TGGGGCATCTGAGTCTGAAAC 59.996 52.381 3.62 0.00 0.00 2.78
154 156 1.003580 GTTTGGGGCATCTGAGTCTGA 59.996 52.381 1.83 1.83 0.00 3.27
162 164 1.203038 TGTGTCATGTTTGGGGCATCT 60.203 47.619 0.00 0.00 0.00 2.90
168 170 3.119173 AGTGTTTGTGTGTCATGTTTGGG 60.119 43.478 0.00 0.00 0.00 4.12
174 176 4.621068 ACTGAAGTGTTTGTGTGTCATG 57.379 40.909 0.00 0.00 0.00 3.07
175 177 4.142403 CCAACTGAAGTGTTTGTGTGTCAT 60.142 41.667 0.00 0.00 0.00 3.06
182 186 6.976934 AATTATCCCAACTGAAGTGTTTGT 57.023 33.333 0.00 0.00 0.00 2.83
183 187 8.960591 AGATAATTATCCCAACTGAAGTGTTTG 58.039 33.333 19.67 0.00 33.17 2.93
197 202 8.462016 GCACATGGTAATGAAGATAATTATCCC 58.538 37.037 19.67 12.94 37.24 3.85
206 211 5.301045 CAGGAATGCACATGGTAATGAAGAT 59.699 40.000 0.00 0.00 37.24 2.40
208 213 4.735578 GCAGGAATGCACATGGTAATGAAG 60.736 45.833 0.00 0.00 37.24 3.02
210 215 2.689471 GCAGGAATGCACATGGTAATGA 59.311 45.455 0.00 0.00 37.24 2.57
211 216 2.427812 TGCAGGAATGCACATGGTAATG 59.572 45.455 0.00 0.00 40.23 1.90
212 217 2.691526 CTGCAGGAATGCACATGGTAAT 59.308 45.455 5.57 0.00 40.23 1.89
213 218 2.093890 CTGCAGGAATGCACATGGTAA 58.906 47.619 5.57 0.00 40.23 2.85
214 219 1.753930 CTGCAGGAATGCACATGGTA 58.246 50.000 5.57 0.00 40.23 3.25
215 220 1.601419 GCTGCAGGAATGCACATGGT 61.601 55.000 17.12 0.00 40.23 3.55
217 222 0.179137 CTGCTGCAGGAATGCACATG 60.179 55.000 21.71 0.00 40.23 3.21
218 223 0.323087 TCTGCTGCAGGAATGCACAT 60.323 50.000 27.79 0.00 40.23 3.21
227 237 4.005650 TCAGAAAATAGTTCTGCTGCAGG 58.994 43.478 27.79 10.85 44.08 4.85
232 242 9.039870 CGAGATAATTCAGAAAATAGTTCTGCT 57.960 33.333 10.55 2.28 44.08 4.24
236 246 9.591404 CATGCGAGATAATTCAGAAAATAGTTC 57.409 33.333 0.00 0.00 0.00 3.01
244 254 7.974482 AATCATCATGCGAGATAATTCAGAA 57.026 32.000 0.00 0.00 0.00 3.02
258 268 5.008019 AGTGTCCATTACGAAATCATCATGC 59.992 40.000 0.00 0.00 0.00 4.06
270 280 6.420903 ACGATGATTATCAAGTGTCCATTACG 59.579 38.462 0.00 0.00 32.67 3.18
277 287 5.331607 GCACGTACGATGATTATCAAGTGTC 60.332 44.000 24.41 1.35 32.67 3.67
284 294 5.231357 TCACAAAGCACGTACGATGATTATC 59.769 40.000 24.41 3.67 0.00 1.75
333 343 3.261580 CACGTCTTCCAAGCATATGACA 58.738 45.455 6.97 0.00 0.00 3.58
342 352 1.941812 GTGCACCACGTCTTCCAAG 59.058 57.895 5.22 0.00 0.00 3.61
381 391 0.387929 TCGCCGTTTCTCTGAAGTGT 59.612 50.000 0.00 0.00 0.00 3.55
459 469 2.054453 GCCACCATCCTTGAAGGGC 61.054 63.158 11.99 1.52 35.59 5.19
553 563 0.248215 CGGATCCATCGCTTGTTTGC 60.248 55.000 13.41 0.00 0.00 3.68
635 645 3.501828 CGTGATTTGATCCCAAACACTCA 59.498 43.478 11.16 0.00 44.16 3.41
672 689 3.378399 GAAGGACAGAGCGAGGGGC 62.378 68.421 0.00 0.00 44.05 5.80
685 719 1.000171 CGGCAGATCGATCATGAAGGA 60.000 52.381 26.47 0.00 0.00 3.36
686 720 1.269988 ACGGCAGATCGATCATGAAGG 60.270 52.381 26.47 12.65 0.00 3.46
691 725 0.105593 AAGCACGGCAGATCGATCAT 59.894 50.000 26.47 9.59 0.00 2.45
715 749 0.958822 TCACTAAGTCTGTCAGCGCA 59.041 50.000 11.47 0.00 0.00 6.09
716 750 1.623359 CTCACTAAGTCTGTCAGCGC 58.377 55.000 0.00 0.00 0.00 5.92
717 751 1.542030 ACCTCACTAAGTCTGTCAGCG 59.458 52.381 0.00 0.00 0.00 5.18
718 752 3.321497 CAACCTCACTAAGTCTGTCAGC 58.679 50.000 0.00 0.00 0.00 4.26
721 755 4.220821 TCATCCAACCTCACTAAGTCTGTC 59.779 45.833 0.00 0.00 0.00 3.51
722 756 4.160329 TCATCCAACCTCACTAAGTCTGT 58.840 43.478 0.00 0.00 0.00 3.41
725 804 6.203723 GCAATATCATCCAACCTCACTAAGTC 59.796 42.308 0.00 0.00 0.00 3.01
729 808 5.628797 TGCAATATCATCCAACCTCACTA 57.371 39.130 0.00 0.00 0.00 2.74
730 809 4.508551 TGCAATATCATCCAACCTCACT 57.491 40.909 0.00 0.00 0.00 3.41
780 859 8.458843 TCAAATCTGGCAAAATAGCTAAAGTAC 58.541 33.333 0.00 0.00 34.17 2.73
845 925 5.046014 ACATTCTTCTTCCTATGCAGTCAGT 60.046 40.000 0.00 0.00 0.00 3.41
846 926 5.426504 ACATTCTTCTTCCTATGCAGTCAG 58.573 41.667 0.00 0.00 0.00 3.51
847 927 5.426689 ACATTCTTCTTCCTATGCAGTCA 57.573 39.130 0.00 0.00 0.00 3.41
848 928 5.448360 GCAACATTCTTCTTCCTATGCAGTC 60.448 44.000 0.00 0.00 0.00 3.51
849 929 4.397417 GCAACATTCTTCTTCCTATGCAGT 59.603 41.667 0.00 0.00 0.00 4.40
850 930 4.397103 TGCAACATTCTTCTTCCTATGCAG 59.603 41.667 0.00 0.00 36.46 4.41
851 931 4.334552 TGCAACATTCTTCTTCCTATGCA 58.665 39.130 0.00 0.00 38.78 3.96
852 932 4.970662 TGCAACATTCTTCTTCCTATGC 57.029 40.909 0.00 0.00 0.00 3.14
858 948 3.423206 CGCTGTTTGCAACATTCTTCTTC 59.577 43.478 0.00 0.00 41.26 2.87
882 974 1.078214 CGTGGACATGGATGCAGGT 60.078 57.895 3.51 3.51 0.00 4.00
892 984 0.461339 GCCATCGTAACCGTGGACAT 60.461 55.000 0.00 0.00 37.41 3.06
962 1063 3.390521 CTGGGCCGAGTACCAGCA 61.391 66.667 6.60 0.00 46.78 4.41
985 1086 2.594592 GACGCCAAGCAACCAGGT 60.595 61.111 0.00 0.00 0.00 4.00
1103 1236 2.419198 GCGCCGATGACATCCTCT 59.581 61.111 9.87 0.00 0.00 3.69
1176 1309 1.603455 CGGGGAGCTTGCCTTGAAA 60.603 57.895 0.00 0.00 0.00 2.69
1224 1363 1.801178 ACTTCTGCTAGCAAAACGAGC 59.199 47.619 19.86 0.00 46.33 5.03
1243 1394 3.130227 CGCCCCTAGTCCTAGCAC 58.870 66.667 0.00 0.00 31.95 4.40
1244 1395 2.838225 GCGCCCCTAGTCCTAGCA 60.838 66.667 0.00 0.00 31.95 3.49
1256 1407 3.539791 CCAATTCATGGGGCGCCC 61.540 66.667 38.57 38.57 46.27 6.13
1281 1432 5.690409 GTGATCTCGTTATCCGAATTAGCAA 59.310 40.000 0.00 0.00 46.75 3.91
1300 1451 2.838736 ACATGAACCCTATGCGTGATC 58.161 47.619 0.00 0.00 0.00 2.92
1320 1471 0.036732 AGCTGAAATCCCGCAGACAA 59.963 50.000 0.00 0.00 34.06 3.18
1356 1507 0.255890 GCTATGGGCAGAGGAACCAA 59.744 55.000 0.00 0.00 41.35 3.67
1397 1548 3.194005 AGCAAATGGTATGGGTACTCG 57.806 47.619 0.00 0.00 0.00 4.18
1402 1553 3.456380 ACAGAAGCAAATGGTATGGGT 57.544 42.857 0.00 0.00 0.00 4.51
1422 1573 2.163412 GGCCGTGAACAAATCATAGCAA 59.837 45.455 0.00 0.00 40.97 3.91
1440 1591 2.281484 TGCCAGACAAACTCGGCC 60.281 61.111 0.00 0.00 39.93 6.13
1596 1752 2.236893 TGCATGCCTCACTTGACTATCA 59.763 45.455 16.68 0.00 0.00 2.15
1597 1753 2.910199 TGCATGCCTCACTTGACTATC 58.090 47.619 16.68 0.00 0.00 2.08
1598 1754 3.211865 CATGCATGCCTCACTTGACTAT 58.788 45.455 14.93 0.00 0.00 2.12
1599 1755 2.026915 ACATGCATGCCTCACTTGACTA 60.027 45.455 26.53 0.00 0.00 2.59
1600 1756 1.271762 ACATGCATGCCTCACTTGACT 60.272 47.619 26.53 0.00 0.00 3.41
1601 1757 1.171308 ACATGCATGCCTCACTTGAC 58.829 50.000 26.53 0.00 0.00 3.18
1602 1758 1.913778 AACATGCATGCCTCACTTGA 58.086 45.000 26.53 0.00 0.00 3.02
1616 1772 2.414481 CGAGCTTCTCCACTGAAACATG 59.586 50.000 0.00 0.00 0.00 3.21
1771 1927 2.742589 GGCTTACTTGTGAAGGTACTGC 59.257 50.000 0.00 0.00 40.86 4.40
1781 1937 5.627499 TCAGCATAAAAGGCTTACTTGTG 57.373 39.130 0.00 1.99 40.23 3.33
1986 2240 4.787551 TCCTTAGAAGAAACAACTGCCAA 58.212 39.130 0.00 0.00 0.00 4.52
2094 2348 9.962759 GCTTTTTGATATCACATTTTTGTCATC 57.037 29.630 4.48 0.00 0.00 2.92
2164 2418 8.445588 AGTCCCTAATAGGAGAAAACAAGAAAA 58.554 33.333 8.12 0.00 37.67 2.29
2547 2801 9.639601 TCCTTTTTGAAGAAGAAAAGAAGAAAC 57.360 29.630 9.45 0.00 42.58 2.78
2571 2826 6.360370 TGGCCATACTTCTAACATATCTCC 57.640 41.667 0.00 0.00 0.00 3.71
2666 2921 4.582656 CCATTTTACTTCACCACCAAGACA 59.417 41.667 0.00 0.00 0.00 3.41
2698 2953 3.117550 TGCCATGCATTACCTTATCAGGT 60.118 43.478 3.59 3.59 44.90 4.00
2740 2996 6.537301 TGTTGAATCAGTCGTTTAGTGACTTT 59.463 34.615 0.00 0.00 44.00 2.66
2741 2997 6.046593 TGTTGAATCAGTCGTTTAGTGACTT 58.953 36.000 0.00 0.00 44.00 3.01
2743 2999 5.900339 TGTTGAATCAGTCGTTTAGTGAC 57.100 39.130 0.00 0.00 40.38 3.67
2744 3000 5.051307 CGTTGTTGAATCAGTCGTTTAGTGA 60.051 40.000 0.00 0.00 41.80 3.41
2745 3001 5.130519 CGTTGTTGAATCAGTCGTTTAGTG 58.869 41.667 0.00 0.00 0.00 2.74
2746 3002 4.807304 ACGTTGTTGAATCAGTCGTTTAGT 59.193 37.500 0.00 0.00 0.00 2.24
2747 3003 5.324739 ACGTTGTTGAATCAGTCGTTTAG 57.675 39.130 0.00 0.00 0.00 1.85
2768 3024 7.326063 GCCATTTCAGTTCTGTATTGTGTTTAC 59.674 37.037 0.00 0.00 0.00 2.01
2811 3067 2.287644 CACAAGTTCACAATGCAGTCGA 59.712 45.455 0.00 0.00 0.00 4.20
2813 3069 3.969117 TCACAAGTTCACAATGCAGTC 57.031 42.857 0.00 0.00 0.00 3.51
2816 3072 3.181478 TGCAATCACAAGTTCACAATGCA 60.181 39.130 0.00 0.00 38.78 3.96
2852 3108 6.756221 AGACGTTTTGGATCACTAAAGTAGT 58.244 36.000 0.00 0.00 40.28 2.73
2853 3109 7.653767 AAGACGTTTTGGATCACTAAAGTAG 57.346 36.000 0.00 0.00 0.00 2.57
2855 3111 9.715121 TTATAAGACGTTTTGGATCACTAAAGT 57.285 29.630 0.83 0.00 0.00 2.66
2859 3115 9.715121 ACTTTTATAAGACGTTTTGGATCACTA 57.285 29.630 0.83 0.00 35.30 2.74
2860 3116 8.617290 ACTTTTATAAGACGTTTTGGATCACT 57.383 30.769 0.83 0.00 35.30 3.41
2861 3117 9.673454 AAACTTTTATAAGACGTTTTGGATCAC 57.327 29.630 0.83 0.00 35.30 3.06
2869 3125 8.996271 CCCTCTGTAAACTTTTATAAGACGTTT 58.004 33.333 0.00 11.20 35.30 3.60
2870 3126 8.370182 TCCCTCTGTAAACTTTTATAAGACGTT 58.630 33.333 0.00 0.00 35.30 3.99
2871 3127 7.899973 TCCCTCTGTAAACTTTTATAAGACGT 58.100 34.615 0.00 0.00 35.30 4.34
2872 3128 8.033626 ACTCCCTCTGTAAACTTTTATAAGACG 58.966 37.037 0.00 0.00 35.30 4.18
2878 3134 9.544579 AGTAGTACTCCCTCTGTAAACTTTTAT 57.455 33.333 0.00 0.00 0.00 1.40
2879 3135 8.946797 AGTAGTACTCCCTCTGTAAACTTTTA 57.053 34.615 0.00 0.00 0.00 1.52
2880 3136 7.852550 AGTAGTACTCCCTCTGTAAACTTTT 57.147 36.000 0.00 0.00 0.00 2.27
2881 3137 7.668492 CAAGTAGTACTCCCTCTGTAAACTTT 58.332 38.462 2.58 0.00 31.65 2.66
2882 3138 6.295180 GCAAGTAGTACTCCCTCTGTAAACTT 60.295 42.308 2.58 0.00 32.96 2.66
2883 3139 5.185442 GCAAGTAGTACTCCCTCTGTAAACT 59.815 44.000 2.58 0.00 0.00 2.66
2884 3140 5.185442 AGCAAGTAGTACTCCCTCTGTAAAC 59.815 44.000 2.58 0.00 0.00 2.01
2885 3141 5.331069 AGCAAGTAGTACTCCCTCTGTAAA 58.669 41.667 2.58 0.00 0.00 2.01
2886 3142 4.931914 AGCAAGTAGTACTCCCTCTGTAA 58.068 43.478 2.58 0.00 0.00 2.41
2887 3143 4.587976 AGCAAGTAGTACTCCCTCTGTA 57.412 45.455 2.58 0.00 0.00 2.74
2888 3144 3.459710 AGCAAGTAGTACTCCCTCTGT 57.540 47.619 2.58 0.00 0.00 3.41
2889 3145 4.810191 AAAGCAAGTAGTACTCCCTCTG 57.190 45.455 2.58 0.00 0.00 3.35
2890 3146 5.778750 TGTTAAAGCAAGTAGTACTCCCTCT 59.221 40.000 2.58 0.00 0.00 3.69
2891 3147 6.034161 TGTTAAAGCAAGTAGTACTCCCTC 57.966 41.667 2.58 0.00 0.00 4.30
2892 3148 6.038997 CTGTTAAAGCAAGTAGTACTCCCT 57.961 41.667 2.58 0.16 0.00 4.20
3104 3364 0.179000 AGATGTCATTCCGGCTCCAC 59.821 55.000 0.00 0.00 0.00 4.02
3118 3378 3.542648 CTCCAGTGATGAATGCAGATGT 58.457 45.455 0.00 0.00 0.00 3.06
3159 3419 1.278127 TCTCCAAATTCACCGAGTCCC 59.722 52.381 0.00 0.00 0.00 4.46
3283 3543 0.312729 CCTGTTTAAACGGTGTGCCC 59.687 55.000 22.54 0.00 33.38 5.36
3300 3560 2.088104 TCATCCTAGACCGCAATCCT 57.912 50.000 0.00 0.00 0.00 3.24
3318 3578 6.144402 ACTTGACAATTGAAAAACGCATCATC 59.856 34.615 13.59 0.00 0.00 2.92
3326 3586 6.476380 TGATGCTCACTTGACAATTGAAAAAC 59.524 34.615 13.59 3.68 0.00 2.43
3327 3587 6.571605 TGATGCTCACTTGACAATTGAAAAA 58.428 32.000 13.59 2.46 0.00 1.94
3334 3594 2.490903 GCCTTGATGCTCACTTGACAAT 59.509 45.455 0.00 0.00 0.00 2.71
3354 3615 1.227853 ACTGAAACACCTCCACGGC 60.228 57.895 0.00 0.00 35.61 5.68
3392 3654 9.723601 ATATTTTATTGCCGGAAAATGCATAAT 57.276 25.926 17.44 11.14 36.27 1.28
3502 3764 1.699634 GCCTGGGTTCTGGAGCATATA 59.300 52.381 0.00 0.00 34.32 0.86
3503 3765 0.475906 GCCTGGGTTCTGGAGCATAT 59.524 55.000 0.00 0.00 34.32 1.78
3583 3845 0.986527 TTGCCTCTGCCAGAATCAGA 59.013 50.000 0.00 0.00 38.16 3.27
3584 3846 1.676529 CATTGCCTCTGCCAGAATCAG 59.323 52.381 0.00 0.00 36.33 2.90
3624 3888 7.985184 TCCTCTTAAACGTAGCATCATTACAAT 59.015 33.333 0.00 0.00 0.00 2.71
3644 3908 3.626924 ACCGCGGTGCTTCCTCTT 61.627 61.111 33.75 0.00 0.00 2.85
3661 3925 0.323999 TAGCGCCTACCTGAAGACCA 60.324 55.000 2.29 0.00 0.00 4.02
3673 3937 3.227276 CCCACGATCCTAGCGCCT 61.227 66.667 2.29 0.00 0.00 5.52
3741 4040 3.159472 TCAGTGCAAAAGAATGCCATCT 58.841 40.909 0.00 0.00 45.83 2.90
3766 4065 0.658897 TCGCCGTTTTCCTTTGTCAC 59.341 50.000 0.00 0.00 0.00 3.67
4058 4362 5.211973 AGGAGCTACATTGGATTCAGAGTA 58.788 41.667 0.00 0.00 0.00 2.59
4137 5583 5.679601 GAGCTTTCTCCTTTAGATGTGGAT 58.320 41.667 0.00 0.00 33.05 3.41
4161 5607 5.407407 TGCTGGTCCTAGAAAGTTTAGAG 57.593 43.478 0.00 0.00 0.00 2.43
4184 5630 1.905894 GGAAAGAGCTTGAGGAGGAGT 59.094 52.381 0.00 0.00 0.00 3.85
4197 5643 4.215185 GCCTGAACTCAAAGAAGGAAAGAG 59.785 45.833 0.00 0.00 0.00 2.85
4203 5649 3.415212 TCATGCCTGAACTCAAAGAAGG 58.585 45.455 0.00 0.00 0.00 3.46
4221 5667 3.033909 TCGAACACCCTCATGAGATCAT 58.966 45.455 24.62 6.03 36.96 2.45
4222 5668 2.166459 GTCGAACACCCTCATGAGATCA 59.834 50.000 24.62 3.37 0.00 2.92
4223 5669 2.482142 GGTCGAACACCCTCATGAGATC 60.482 54.545 24.62 12.07 39.69 2.75
4224 5670 1.482593 GGTCGAACACCCTCATGAGAT 59.517 52.381 24.62 8.94 39.69 2.75
4225 5671 0.895530 GGTCGAACACCCTCATGAGA 59.104 55.000 24.62 0.00 39.69 3.27
4226 5672 0.458543 CGGTCGAACACCCTCATGAG 60.459 60.000 16.24 16.24 43.31 2.90
4227 5673 1.183030 ACGGTCGAACACCCTCATGA 61.183 55.000 0.00 0.00 43.31 3.07
4228 5674 0.320421 AACGGTCGAACACCCTCATG 60.320 55.000 0.00 0.00 43.31 3.07
4229 5675 0.395312 AAACGGTCGAACACCCTCAT 59.605 50.000 0.00 0.00 43.31 2.90
4230 5676 0.249573 GAAACGGTCGAACACCCTCA 60.250 55.000 0.00 0.00 43.31 3.86
4231 5677 2.525422 GAAACGGTCGAACACCCTC 58.475 57.895 0.00 0.00 43.31 4.30
4232 5678 4.764896 GAAACGGTCGAACACCCT 57.235 55.556 0.00 0.00 43.31 4.34
4241 5687 1.132073 GTAGAGGGAGTCGAAACGGTC 59.868 57.143 0.00 0.00 0.00 4.79
4242 5688 1.172175 GTAGAGGGAGTCGAAACGGT 58.828 55.000 0.00 0.00 0.00 4.83
4243 5689 1.401199 GAGTAGAGGGAGTCGAAACGG 59.599 57.143 0.00 0.00 0.00 4.44
4244 5690 2.082231 TGAGTAGAGGGAGTCGAAACG 58.918 52.381 0.00 0.00 0.00 3.60
4245 5691 3.255149 TGTTGAGTAGAGGGAGTCGAAAC 59.745 47.826 0.00 0.00 0.00 2.78
4246 5692 3.493334 TGTTGAGTAGAGGGAGTCGAAA 58.507 45.455 0.00 0.00 0.00 3.46
4247 5693 3.150458 TGTTGAGTAGAGGGAGTCGAA 57.850 47.619 0.00 0.00 0.00 3.71
4248 5694 2.873094 TGTTGAGTAGAGGGAGTCGA 57.127 50.000 0.00 0.00 0.00 4.20
4249 5695 3.936372 TTTGTTGAGTAGAGGGAGTCG 57.064 47.619 0.00 0.00 0.00 4.18
4250 5696 5.415221 CAGATTTGTTGAGTAGAGGGAGTC 58.585 45.833 0.00 0.00 0.00 3.36
4251 5697 4.323104 GCAGATTTGTTGAGTAGAGGGAGT 60.323 45.833 0.00 0.00 0.00 3.85
4252 5698 4.187694 GCAGATTTGTTGAGTAGAGGGAG 58.812 47.826 0.00 0.00 0.00 4.30
4253 5699 3.582647 TGCAGATTTGTTGAGTAGAGGGA 59.417 43.478 0.00 0.00 0.00 4.20
4254 5700 3.942829 TGCAGATTTGTTGAGTAGAGGG 58.057 45.455 0.00 0.00 0.00 4.30
4255 5701 5.163683 CCAATGCAGATTTGTTGAGTAGAGG 60.164 44.000 0.00 0.00 0.00 3.69
4256 5702 5.675575 GCCAATGCAGATTTGTTGAGTAGAG 60.676 44.000 0.00 0.00 37.47 2.43
4257 5703 4.156556 GCCAATGCAGATTTGTTGAGTAGA 59.843 41.667 0.00 0.00 37.47 2.59
4258 5704 4.157289 AGCCAATGCAGATTTGTTGAGTAG 59.843 41.667 0.00 0.00 41.13 2.57
4259 5705 4.081406 AGCCAATGCAGATTTGTTGAGTA 58.919 39.130 0.00 0.00 41.13 2.59
4260 5706 2.895404 AGCCAATGCAGATTTGTTGAGT 59.105 40.909 0.00 0.00 41.13 3.41
4261 5707 3.057104 TGAGCCAATGCAGATTTGTTGAG 60.057 43.478 0.00 0.00 41.13 3.02
4262 5708 2.892215 TGAGCCAATGCAGATTTGTTGA 59.108 40.909 0.00 0.00 41.13 3.18
4263 5709 3.306917 TGAGCCAATGCAGATTTGTTG 57.693 42.857 0.00 0.00 41.13 3.33
4264 5710 3.322828 AGTTGAGCCAATGCAGATTTGTT 59.677 39.130 0.00 0.00 41.13 2.83
4265 5711 2.895404 AGTTGAGCCAATGCAGATTTGT 59.105 40.909 0.00 0.00 41.13 2.83
4266 5712 3.508762 GAGTTGAGCCAATGCAGATTTG 58.491 45.455 0.00 0.00 41.13 2.32
4267 5713 2.163010 CGAGTTGAGCCAATGCAGATTT 59.837 45.455 0.00 0.00 41.13 2.17
4268 5714 1.741706 CGAGTTGAGCCAATGCAGATT 59.258 47.619 0.00 0.00 41.13 2.40
4269 5715 1.376543 CGAGTTGAGCCAATGCAGAT 58.623 50.000 0.00 0.00 41.13 2.90
4270 5716 0.674581 CCGAGTTGAGCCAATGCAGA 60.675 55.000 0.00 0.00 41.13 4.26
4271 5717 1.798735 CCGAGTTGAGCCAATGCAG 59.201 57.895 0.00 0.00 41.13 4.41
4272 5718 2.334946 GCCGAGTTGAGCCAATGCA 61.335 57.895 0.00 0.00 41.13 3.96
4273 5719 1.865788 TTGCCGAGTTGAGCCAATGC 61.866 55.000 0.00 0.00 37.95 3.56
4274 5720 0.597568 TTTGCCGAGTTGAGCCAATG 59.402 50.000 0.00 0.00 0.00 2.82
4275 5721 1.549203 ATTTGCCGAGTTGAGCCAAT 58.451 45.000 0.00 0.00 0.00 3.16
4276 5722 2.192664 TATTTGCCGAGTTGAGCCAA 57.807 45.000 0.00 0.00 0.00 4.52
4277 5723 2.288666 GATATTTGCCGAGTTGAGCCA 58.711 47.619 0.00 0.00 0.00 4.75
4278 5724 2.288666 TGATATTTGCCGAGTTGAGCC 58.711 47.619 0.00 0.00 0.00 4.70
4279 5725 3.851105 GCATGATATTTGCCGAGTTGAGC 60.851 47.826 0.00 0.00 33.95 4.26
4280 5726 3.562973 AGCATGATATTTGCCGAGTTGAG 59.437 43.478 0.00 0.00 41.06 3.02
4281 5727 3.544684 AGCATGATATTTGCCGAGTTGA 58.455 40.909 0.00 0.00 41.06 3.18
4282 5728 3.976793 AGCATGATATTTGCCGAGTTG 57.023 42.857 0.00 0.00 41.06 3.16
4283 5729 4.036027 CAGAAGCATGATATTTGCCGAGTT 59.964 41.667 0.00 0.00 41.06 3.01
4284 5730 3.562973 CAGAAGCATGATATTTGCCGAGT 59.437 43.478 0.00 0.00 41.06 4.18
4285 5731 3.608707 GCAGAAGCATGATATTTGCCGAG 60.609 47.826 0.00 0.00 41.06 4.63
4286 5732 2.291465 GCAGAAGCATGATATTTGCCGA 59.709 45.455 0.00 0.00 41.06 5.54
4287 5733 2.606308 GGCAGAAGCATGATATTTGCCG 60.606 50.000 14.81 0.00 44.61 5.69
4288 5734 2.606308 CGGCAGAAGCATGATATTTGCC 60.606 50.000 18.20 18.20 44.59 4.52
4289 5735 2.291465 TCGGCAGAAGCATGATATTTGC 59.709 45.455 0.00 0.92 44.61 3.68
4290 5736 4.534168 CTTCGGCAGAAGCATGATATTTG 58.466 43.478 13.72 0.00 46.12 2.32
4291 5737 4.825546 CTTCGGCAGAAGCATGATATTT 57.174 40.909 13.72 0.00 46.12 1.40
4302 5748 0.324943 CCCTTCCTTCTTCGGCAGAA 59.675 55.000 0.00 0.00 39.39 3.02
4303 5749 1.553690 CCCCTTCCTTCTTCGGCAGA 61.554 60.000 0.00 0.00 0.00 4.26
4304 5750 1.078143 CCCCTTCCTTCTTCGGCAG 60.078 63.158 0.00 0.00 0.00 4.85
4305 5751 3.077907 CCCCTTCCTTCTTCGGCA 58.922 61.111 0.00 0.00 0.00 5.69
4306 5752 2.438614 GCCCCTTCCTTCTTCGGC 60.439 66.667 0.00 0.00 0.00 5.54
4307 5753 1.078143 CTGCCCCTTCCTTCTTCGG 60.078 63.158 0.00 0.00 0.00 4.30
4308 5754 0.107945 CTCTGCCCCTTCCTTCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
4309 5755 1.209261 CTCTCTGCCCCTTCCTTCTTC 59.791 57.143 0.00 0.00 0.00 2.87
4310 5756 1.284313 CTCTCTGCCCCTTCCTTCTT 58.716 55.000 0.00 0.00 0.00 2.52
4311 5757 0.620121 CCTCTCTGCCCCTTCCTTCT 60.620 60.000 0.00 0.00 0.00 2.85
4312 5758 1.631071 CCCTCTCTGCCCCTTCCTTC 61.631 65.000 0.00 0.00 0.00 3.46
4313 5759 1.617839 CCCTCTCTGCCCCTTCCTT 60.618 63.158 0.00 0.00 0.00 3.36
4314 5760 2.041928 CCCTCTCTGCCCCTTCCT 59.958 66.667 0.00 0.00 0.00 3.36
4315 5761 2.285743 ACCCTCTCTGCCCCTTCC 60.286 66.667 0.00 0.00 0.00 3.46
4316 5762 2.726351 CGACCCTCTCTGCCCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
4317 5763 2.685380 CGACCCTCTCTGCCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
4322 5768 4.500116 GTCGGCGACCCTCTCTGC 62.500 72.222 28.72 0.05 0.00 4.26
4323 5769 0.820074 ATAGTCGGCGACCCTCTCTG 60.820 60.000 34.04 0.00 32.18 3.35
4324 5770 0.763652 TATAGTCGGCGACCCTCTCT 59.236 55.000 34.04 18.38 32.18 3.10
4325 5771 1.158434 CTATAGTCGGCGACCCTCTC 58.842 60.000 34.04 10.71 32.18 3.20
4326 5772 0.763652 TCTATAGTCGGCGACCCTCT 59.236 55.000 34.04 19.48 32.18 3.69
4327 5773 0.873721 GTCTATAGTCGGCGACCCTC 59.126 60.000 34.04 11.90 32.18 4.30
4328 5774 0.536915 GGTCTATAGTCGGCGACCCT 60.537 60.000 34.04 23.83 39.96 4.34
4329 5775 1.955285 GGTCTATAGTCGGCGACCC 59.045 63.158 34.04 23.21 39.96 4.46
4330 5776 0.820891 TGGGTCTATAGTCGGCGACC 60.821 60.000 34.04 18.87 44.00 4.79
4331 5777 0.592148 CTGGGTCTATAGTCGGCGAC 59.408 60.000 31.33 31.33 0.00 5.19
4332 5778 0.471191 TCTGGGTCTATAGTCGGCGA 59.529 55.000 4.99 4.99 0.00 5.54
4333 5779 1.535833 ATCTGGGTCTATAGTCGGCG 58.464 55.000 0.00 0.00 0.00 6.46
4334 5780 5.411781 CAATTATCTGGGTCTATAGTCGGC 58.588 45.833 0.00 0.00 0.00 5.54
4335 5781 5.411781 GCAATTATCTGGGTCTATAGTCGG 58.588 45.833 0.00 0.00 0.00 4.79
4336 5782 5.096169 CGCAATTATCTGGGTCTATAGTCG 58.904 45.833 0.00 0.00 0.00 4.18
4337 5783 5.185249 TCCGCAATTATCTGGGTCTATAGTC 59.815 44.000 0.00 0.00 0.00 2.59
4338 5784 5.084519 TCCGCAATTATCTGGGTCTATAGT 58.915 41.667 0.00 0.00 0.00 2.12
4339 5785 5.661056 TCCGCAATTATCTGGGTCTATAG 57.339 43.478 0.00 0.00 0.00 1.31
4340 5786 5.542635 ACTTCCGCAATTATCTGGGTCTATA 59.457 40.000 0.00 0.00 0.00 1.31
4341 5787 4.348168 ACTTCCGCAATTATCTGGGTCTAT 59.652 41.667 0.00 0.00 0.00 1.98
4342 5788 3.709653 ACTTCCGCAATTATCTGGGTCTA 59.290 43.478 0.00 0.00 0.00 2.59
4343 5789 2.505819 ACTTCCGCAATTATCTGGGTCT 59.494 45.455 0.00 0.00 0.00 3.85
4344 5790 2.614057 CACTTCCGCAATTATCTGGGTC 59.386 50.000 0.00 0.00 0.00 4.46
4345 5791 2.643551 CACTTCCGCAATTATCTGGGT 58.356 47.619 0.00 0.00 0.00 4.51
4346 5792 1.334869 GCACTTCCGCAATTATCTGGG 59.665 52.381 0.00 0.00 0.00 4.45
4347 5793 2.289002 GAGCACTTCCGCAATTATCTGG 59.711 50.000 0.00 0.00 0.00 3.86
4348 5794 3.201290 AGAGCACTTCCGCAATTATCTG 58.799 45.455 0.00 0.00 0.00 2.90
4349 5795 3.462021 GAGAGCACTTCCGCAATTATCT 58.538 45.455 0.00 0.00 0.00 1.98
4350 5796 2.545946 GGAGAGCACTTCCGCAATTATC 59.454 50.000 0.00 0.00 0.00 1.75
4351 5797 2.092968 TGGAGAGCACTTCCGCAATTAT 60.093 45.455 0.00 0.00 0.00 1.28
4352 5798 1.277842 TGGAGAGCACTTCCGCAATTA 59.722 47.619 0.00 0.00 0.00 1.40
4353 5799 0.036732 TGGAGAGCACTTCCGCAATT 59.963 50.000 0.00 0.00 0.00 2.32
4354 5800 0.254178 ATGGAGAGCACTTCCGCAAT 59.746 50.000 0.00 0.00 0.00 3.56
4355 5801 0.036732 AATGGAGAGCACTTCCGCAA 59.963 50.000 0.00 0.00 0.00 4.85
4356 5802 0.901827 TAATGGAGAGCACTTCCGCA 59.098 50.000 0.00 0.00 0.00 5.69
4357 5803 1.576356 CTAATGGAGAGCACTTCCGC 58.424 55.000 0.00 0.00 0.00 5.54
4358 5804 1.808133 GCCTAATGGAGAGCACTTCCG 60.808 57.143 0.00 0.00 34.57 4.30
4359 5805 1.488393 AGCCTAATGGAGAGCACTTCC 59.512 52.381 0.00 0.00 34.57 3.46
4360 5806 2.941720 CAAGCCTAATGGAGAGCACTTC 59.058 50.000 0.00 0.00 34.57 3.01
4361 5807 2.356535 CCAAGCCTAATGGAGAGCACTT 60.357 50.000 0.00 0.00 40.56 3.16
4362 5808 1.211457 CCAAGCCTAATGGAGAGCACT 59.789 52.381 0.00 0.00 40.56 4.40
4363 5809 1.673168 CCAAGCCTAATGGAGAGCAC 58.327 55.000 0.00 0.00 40.56 4.40
4364 5810 0.107017 GCCAAGCCTAATGGAGAGCA 60.107 55.000 0.00 0.00 40.56 4.26
4365 5811 0.821301 GGCCAAGCCTAATGGAGAGC 60.821 60.000 0.00 0.00 46.69 4.09
4366 5812 3.410960 GGCCAAGCCTAATGGAGAG 57.589 57.895 0.00 0.00 46.69 3.20
4384 5830 1.200760 TGAGAGTGGACATGTGGGGG 61.201 60.000 1.15 0.00 0.00 5.40
4385 5831 0.914644 ATGAGAGTGGACATGTGGGG 59.085 55.000 1.15 0.00 0.00 4.96
4386 5832 1.836166 AGATGAGAGTGGACATGTGGG 59.164 52.381 1.15 0.00 0.00 4.61
4387 5833 2.158986 GGAGATGAGAGTGGACATGTGG 60.159 54.545 1.15 0.00 0.00 4.17
4388 5834 2.498885 TGGAGATGAGAGTGGACATGTG 59.501 50.000 1.15 0.00 0.00 3.21
4389 5835 2.825223 TGGAGATGAGAGTGGACATGT 58.175 47.619 0.00 0.00 0.00 3.21
4390 5836 3.529533 GTTGGAGATGAGAGTGGACATG 58.470 50.000 0.00 0.00 0.00 3.21
4391 5837 2.167281 CGTTGGAGATGAGAGTGGACAT 59.833 50.000 0.00 0.00 0.00 3.06
4392 5838 1.546029 CGTTGGAGATGAGAGTGGACA 59.454 52.381 0.00 0.00 0.00 4.02
4393 5839 1.737363 GCGTTGGAGATGAGAGTGGAC 60.737 57.143 0.00 0.00 0.00 4.02
4394 5840 0.532573 GCGTTGGAGATGAGAGTGGA 59.467 55.000 0.00 0.00 0.00 4.02
4395 5841 0.534412 AGCGTTGGAGATGAGAGTGG 59.466 55.000 0.00 0.00 0.00 4.00
4396 5842 1.203287 TGAGCGTTGGAGATGAGAGTG 59.797 52.381 0.00 0.00 0.00 3.51
4397 5843 1.476085 CTGAGCGTTGGAGATGAGAGT 59.524 52.381 0.00 0.00 0.00 3.24
4398 5844 1.747924 TCTGAGCGTTGGAGATGAGAG 59.252 52.381 0.00 0.00 0.00 3.20
4399 5845 1.747924 CTCTGAGCGTTGGAGATGAGA 59.252 52.381 0.00 0.00 0.00 3.27
4400 5846 1.476085 ACTCTGAGCGTTGGAGATGAG 59.524 52.381 4.19 0.00 0.00 2.90
4401 5847 1.203287 CACTCTGAGCGTTGGAGATGA 59.797 52.381 4.19 0.00 0.00 2.92
4402 5848 1.638133 CACTCTGAGCGTTGGAGATG 58.362 55.000 4.19 0.00 0.00 2.90
4403 5849 0.108424 GCACTCTGAGCGTTGGAGAT 60.108 55.000 4.19 0.00 0.00 2.75
4404 5850 1.290324 GCACTCTGAGCGTTGGAGA 59.710 57.895 4.19 0.00 0.00 3.71
4405 5851 0.601046 TTGCACTCTGAGCGTTGGAG 60.601 55.000 4.19 0.00 33.85 3.86
4406 5852 0.179059 TTTGCACTCTGAGCGTTGGA 60.179 50.000 4.19 0.00 33.85 3.53
4407 5853 0.662619 TTTTGCACTCTGAGCGTTGG 59.337 50.000 4.19 0.00 33.85 3.77
4408 5854 2.287188 ACATTTTGCACTCTGAGCGTTG 60.287 45.455 4.19 0.00 33.85 4.10
4409 5855 1.949525 ACATTTTGCACTCTGAGCGTT 59.050 42.857 4.19 0.00 33.85 4.84
4410 5856 1.265095 CACATTTTGCACTCTGAGCGT 59.735 47.619 4.19 0.00 33.85 5.07
4411 5857 1.400629 CCACATTTTGCACTCTGAGCG 60.401 52.381 4.19 0.00 33.85 5.03
4412 5858 1.881973 TCCACATTTTGCACTCTGAGC 59.118 47.619 4.19 0.00 0.00 4.26
4413 5859 3.144506 ACTCCACATTTTGCACTCTGAG 58.855 45.455 2.45 2.45 0.00 3.35
4414 5860 3.213206 ACTCCACATTTTGCACTCTGA 57.787 42.857 0.00 0.00 0.00 3.27
4415 5861 4.095483 GGATACTCCACATTTTGCACTCTG 59.905 45.833 0.00 0.00 36.28 3.35
4416 5862 4.263462 TGGATACTCCACATTTTGCACTCT 60.263 41.667 0.00 0.00 42.67 3.24
4417 5863 4.009675 TGGATACTCCACATTTTGCACTC 58.990 43.478 0.00 0.00 42.67 3.51
4418 5864 4.032960 TGGATACTCCACATTTTGCACT 57.967 40.909 0.00 0.00 42.67 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.