Multiple sequence alignment - TraesCS7D01G268300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G268300 chr7D 100.000 3575 0 0 1 3575 252237954 252241528 0.000000e+00 6602
1 TraesCS7D01G268300 chr7B 91.361 1609 106 19 1986 3575 228916051 228917645 0.000000e+00 2170
2 TraesCS7D01G268300 chr7B 87.853 1276 57 28 757 1946 228914707 228915970 0.000000e+00 1408
3 TraesCS7D01G268300 chr7B 90.448 335 22 3 1 335 228914127 228914451 1.970000e-117 433
4 TraesCS7D01G268300 chr7B 94.444 72 4 0 3321 3392 228917465 228917536 1.050000e-20 111
5 TraesCS7D01G268300 chr7A 91.049 1620 110 20 1979 3575 268866732 268865125 0.000000e+00 2156
6 TraesCS7D01G268300 chr7A 87.111 1319 55 47 757 1981 268868081 268866784 0.000000e+00 1387
7 TraesCS7D01G268300 chr7A 87.989 358 31 5 1 358 268888745 268888400 2.570000e-111 412
8 TraesCS7D01G268300 chr7A 84.568 162 23 1 569 728 32629373 32629534 3.690000e-35 159
9 TraesCS7D01G268300 chr7A 95.833 72 3 0 3321 3392 268865304 268865233 2.260000e-22 117
10 TraesCS7D01G268300 chr6A 85.443 158 19 3 570 724 515288909 515289065 1.030000e-35 161
11 TraesCS7D01G268300 chr3A 84.568 162 23 1 569 728 597887864 597888025 3.690000e-35 159
12 TraesCS7D01G268300 chr3A 82.955 176 25 4 569 740 703404131 703404305 1.720000e-33 154
13 TraesCS7D01G268300 chr1A 85.256 156 21 1 569 722 578473089 578473244 3.690000e-35 159
14 TraesCS7D01G268300 chr5D 83.735 166 25 2 569 733 342600341 342600505 4.780000e-34 156
15 TraesCS7D01G268300 chr5D 83.234 167 24 3 569 732 354839200 354839365 2.220000e-32 150
16 TraesCS7D01G268300 chr6D 84.177 158 23 2 576 732 69292790 69292946 6.180000e-33 152
17 TraesCS7D01G268300 chr5A 83.333 162 25 1 569 728 538101311 538101472 8.000000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G268300 chr7D 252237954 252241528 3574 False 6602.0 6602 100.0000 1 3575 1 chr7D.!!$F1 3574
1 TraesCS7D01G268300 chr7B 228914127 228917645 3518 False 1030.5 2170 91.0265 1 3575 4 chr7B.!!$F1 3574
2 TraesCS7D01G268300 chr7A 268865125 268868081 2956 True 1220.0 2156 91.3310 757 3575 3 chr7A.!!$R2 2818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.17907 GACGAAGGGGAGAAGCATCC 60.179 60.0 0.00 0.0 38.76 3.51 F
1828 2032 0.03759 TGGCGCAGGACAGGTATTTT 59.962 50.0 10.83 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2197 0.317160 ATTGAAGACGACGGTGAGCA 59.683 50.0 0.0 0.0 0.0 4.26 R
3365 3657 0.249398 GGTCTACAGGTGCGGATGTT 59.751 55.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.298261 CACCCACCCATGGCACCA 62.298 66.667 6.09 0.00 45.76 4.17
58 59 1.276421 ACCAACAAGGAGGATGAGACG 59.724 52.381 0.00 0.00 41.22 4.18
86 87 0.179070 GACGAAGGGGAGAAGCATCC 60.179 60.000 0.00 0.00 38.76 3.51
91 92 2.683465 GGGGAGAAGCATCCTGCCA 61.683 63.158 11.40 0.00 46.52 4.92
92 93 1.535685 GGGAGAAGCATCCTGCCAT 59.464 57.895 5.85 0.00 46.52 4.40
116 117 1.003839 ATTGAAGTCGCCGCCTTCA 60.004 52.632 6.47 6.47 44.83 3.02
154 155 4.436998 CTGAGTCACCGGGGTCGC 62.437 72.222 2.12 0.00 34.56 5.19
169 170 0.388134 GTCGCTCGTGGCAAGAACTA 60.388 55.000 4.37 0.00 41.91 2.24
184 185 3.828921 AGAACTAAGGTTGGGTTTGTCC 58.171 45.455 0.00 0.00 35.58 4.02
212 213 6.735145 GCGCTAAAGGTGAGCTAGTAAATAGA 60.735 42.308 0.00 0.00 37.81 1.98
213 214 7.201145 CGCTAAAGGTGAGCTAGTAAATAGAA 58.799 38.462 0.00 0.00 37.81 2.10
214 215 7.380065 CGCTAAAGGTGAGCTAGTAAATAGAAG 59.620 40.741 0.00 0.00 37.81 2.85
215 216 7.654116 GCTAAAGGTGAGCTAGTAAATAGAAGG 59.346 40.741 0.00 0.00 36.96 3.46
216 217 6.487299 AAGGTGAGCTAGTAAATAGAAGGG 57.513 41.667 0.00 0.00 32.76 3.95
217 218 4.902448 AGGTGAGCTAGTAAATAGAAGGGG 59.098 45.833 0.00 0.00 32.76 4.79
218 219 4.040584 GGTGAGCTAGTAAATAGAAGGGGG 59.959 50.000 0.00 0.00 32.76 5.40
219 220 3.646637 TGAGCTAGTAAATAGAAGGGGGC 59.353 47.826 0.00 0.00 32.76 5.80
257 258 2.398554 CCCGCTTGGAATCGGTGTG 61.399 63.158 1.36 0.00 43.87 3.82
258 259 1.671054 CCGCTTGGAATCGGTGTGT 60.671 57.895 0.00 0.00 40.72 3.72
259 260 0.390603 CCGCTTGGAATCGGTGTGTA 60.391 55.000 0.00 0.00 40.72 2.90
293 294 9.480053 ACACCCGTATTTATTATACATGTGTAC 57.520 33.333 9.11 0.00 37.24 2.90
314 315 8.780249 GTGTACTTTACAACCAGTATGTGATTT 58.220 33.333 0.00 0.00 40.93 2.17
318 319 8.567948 ACTTTACAACCAGTATGTGATTTTCAG 58.432 33.333 0.00 0.00 31.53 3.02
319 320 8.458573 TTTACAACCAGTATGTGATTTTCAGT 57.541 30.769 0.00 0.00 31.53 3.41
335 336 5.637104 TTTCAGTCGAGAAAGAAAACGAG 57.363 39.130 0.00 0.00 35.52 4.18
336 337 4.563337 TCAGTCGAGAAAGAAAACGAGA 57.437 40.909 0.00 0.00 35.52 4.04
339 340 4.380382 CAGTCGAGAAAGAAAACGAGAGAC 59.620 45.833 0.00 0.00 35.52 3.36
356 463 6.496571 CGAGAGACGGAGATATGTACTTTTT 58.503 40.000 0.00 0.00 38.46 1.94
383 490 4.131596 AGGTGTAAAGCGCTAGAAAACAA 58.868 39.130 12.05 0.00 0.00 2.83
384 491 4.213482 AGGTGTAAAGCGCTAGAAAACAAG 59.787 41.667 12.05 0.00 0.00 3.16
386 493 5.277634 GGTGTAAAGCGCTAGAAAACAAGAA 60.278 40.000 12.05 0.00 0.00 2.52
387 494 6.371389 GTGTAAAGCGCTAGAAAACAAGAAT 58.629 36.000 12.05 0.00 0.00 2.40
389 496 4.686839 AAGCGCTAGAAAACAAGAATCC 57.313 40.909 12.05 0.00 0.00 3.01
390 497 3.674997 AGCGCTAGAAAACAAGAATCCA 58.325 40.909 8.99 0.00 0.00 3.41
391 498 4.072131 AGCGCTAGAAAACAAGAATCCAA 58.928 39.130 8.99 0.00 0.00 3.53
392 499 4.702131 AGCGCTAGAAAACAAGAATCCAAT 59.298 37.500 8.99 0.00 0.00 3.16
393 500 5.030936 GCGCTAGAAAACAAGAATCCAATC 58.969 41.667 0.00 0.00 0.00 2.67
394 501 5.391950 GCGCTAGAAAACAAGAATCCAATCA 60.392 40.000 0.00 0.00 0.00 2.57
395 502 6.253746 CGCTAGAAAACAAGAATCCAATCAG 58.746 40.000 0.00 0.00 0.00 2.90
396 503 6.558909 GCTAGAAAACAAGAATCCAATCAGG 58.441 40.000 0.00 0.00 39.47 3.86
397 504 5.990120 AGAAAACAAGAATCCAATCAGGG 57.010 39.130 0.00 0.00 38.24 4.45
398 505 4.221482 AGAAAACAAGAATCCAATCAGGGC 59.779 41.667 0.00 0.00 38.24 5.19
399 506 2.149973 ACAAGAATCCAATCAGGGCC 57.850 50.000 0.00 0.00 38.24 5.80
400 507 1.642762 ACAAGAATCCAATCAGGGCCT 59.357 47.619 0.00 0.00 38.24 5.19
401 508 2.852449 ACAAGAATCCAATCAGGGCCTA 59.148 45.455 5.28 0.00 38.24 3.93
402 509 3.117738 ACAAGAATCCAATCAGGGCCTAG 60.118 47.826 5.28 0.36 38.24 3.02
403 510 2.061061 AGAATCCAATCAGGGCCTAGG 58.939 52.381 5.28 3.67 38.24 3.02
404 511 1.777272 GAATCCAATCAGGGCCTAGGT 59.223 52.381 5.28 0.00 38.24 3.08
405 512 1.912862 ATCCAATCAGGGCCTAGGTT 58.087 50.000 5.28 0.00 38.24 3.50
406 513 1.681229 TCCAATCAGGGCCTAGGTTT 58.319 50.000 5.28 0.00 38.24 3.27
407 514 1.564348 TCCAATCAGGGCCTAGGTTTC 59.436 52.381 5.28 0.41 38.24 2.78
408 515 1.566231 CCAATCAGGGCCTAGGTTTCT 59.434 52.381 5.28 2.75 0.00 2.52
409 516 2.422093 CCAATCAGGGCCTAGGTTTCTC 60.422 54.545 5.28 0.00 0.00 2.87
410 517 2.239654 CAATCAGGGCCTAGGTTTCTCA 59.760 50.000 5.28 0.00 0.00 3.27
411 518 1.573108 TCAGGGCCTAGGTTTCTCAG 58.427 55.000 5.28 0.00 0.00 3.35
412 519 0.543749 CAGGGCCTAGGTTTCTCAGG 59.456 60.000 5.28 0.00 0.00 3.86
418 525 2.716217 CCTAGGTTTCTCAGGCTTTGG 58.284 52.381 0.00 0.00 0.00 3.28
419 526 2.040412 CCTAGGTTTCTCAGGCTTTGGT 59.960 50.000 0.00 0.00 0.00 3.67
420 527 1.986882 AGGTTTCTCAGGCTTTGGTG 58.013 50.000 0.00 0.00 0.00 4.17
421 528 1.494721 AGGTTTCTCAGGCTTTGGTGA 59.505 47.619 0.00 0.00 0.00 4.02
422 529 1.882623 GGTTTCTCAGGCTTTGGTGAG 59.117 52.381 0.00 0.00 41.44 3.51
423 530 2.487265 GGTTTCTCAGGCTTTGGTGAGA 60.487 50.000 0.00 0.00 45.94 3.27
426 533 3.795688 TCTCAGGCTTTGGTGAGAATT 57.204 42.857 1.31 0.00 44.92 2.17
427 534 4.908601 TCTCAGGCTTTGGTGAGAATTA 57.091 40.909 1.31 0.00 44.92 1.40
428 535 5.441718 TCTCAGGCTTTGGTGAGAATTAT 57.558 39.130 1.31 0.00 44.92 1.28
429 536 5.431765 TCTCAGGCTTTGGTGAGAATTATC 58.568 41.667 1.31 0.00 44.92 1.75
430 537 5.190528 TCTCAGGCTTTGGTGAGAATTATCT 59.809 40.000 1.19 0.00 44.92 1.98
431 538 6.384015 TCTCAGGCTTTGGTGAGAATTATCTA 59.616 38.462 1.19 0.00 44.92 1.98
432 539 6.586344 TCAGGCTTTGGTGAGAATTATCTAG 58.414 40.000 1.19 0.00 35.54 2.43
433 540 5.762218 CAGGCTTTGGTGAGAATTATCTAGG 59.238 44.000 1.19 0.00 35.54 3.02
434 541 5.430089 AGGCTTTGGTGAGAATTATCTAGGT 59.570 40.000 1.19 0.00 35.54 3.08
435 542 6.069381 AGGCTTTGGTGAGAATTATCTAGGTT 60.069 38.462 1.19 0.00 35.54 3.50
436 543 6.261158 GGCTTTGGTGAGAATTATCTAGGTTC 59.739 42.308 1.19 0.00 35.54 3.62
437 544 6.823689 GCTTTGGTGAGAATTATCTAGGTTCA 59.176 38.462 1.19 0.00 35.54 3.18
438 545 7.336931 GCTTTGGTGAGAATTATCTAGGTTCAA 59.663 37.037 1.19 0.00 35.54 2.69
439 546 8.561738 TTTGGTGAGAATTATCTAGGTTCAAC 57.438 34.615 1.19 0.00 35.54 3.18
440 547 6.650120 TGGTGAGAATTATCTAGGTTCAACC 58.350 40.000 0.00 0.00 35.54 3.77
441 548 6.214615 TGGTGAGAATTATCTAGGTTCAACCA 59.785 38.462 9.90 1.49 36.99 3.67
442 549 6.539103 GGTGAGAATTATCTAGGTTCAACCAC 59.461 42.308 9.90 0.00 36.99 4.16
443 550 7.331791 GTGAGAATTATCTAGGTTCAACCACT 58.668 38.462 9.90 0.00 36.99 4.00
444 551 7.492994 GTGAGAATTATCTAGGTTCAACCACTC 59.507 40.741 9.90 4.09 36.99 3.51
445 552 6.890293 AGAATTATCTAGGTTCAACCACTCC 58.110 40.000 9.90 0.00 41.95 3.85
446 553 6.443849 AGAATTATCTAGGTTCAACCACTCCA 59.556 38.462 9.90 0.00 41.95 3.86
447 554 6.636454 ATTATCTAGGTTCAACCACTCCAA 57.364 37.500 9.90 0.00 41.95 3.53
448 555 3.764237 TCTAGGTTCAACCACTCCAAC 57.236 47.619 9.90 0.00 41.95 3.77
449 556 2.036733 TCTAGGTTCAACCACTCCAACG 59.963 50.000 9.90 0.00 41.95 4.10
450 557 0.544697 AGGTTCAACCACTCCAACGT 59.455 50.000 9.90 0.00 41.95 3.99
451 558 0.942252 GGTTCAACCACTCCAACGTC 59.058 55.000 0.01 0.00 38.42 4.34
452 559 1.658994 GTTCAACCACTCCAACGTCA 58.341 50.000 0.00 0.00 0.00 4.35
453 560 1.597663 GTTCAACCACTCCAACGTCAG 59.402 52.381 0.00 0.00 0.00 3.51
454 561 0.531974 TCAACCACTCCAACGTCAGC 60.532 55.000 0.00 0.00 0.00 4.26
455 562 1.227853 AACCACTCCAACGTCAGCC 60.228 57.895 0.00 0.00 0.00 4.85
456 563 1.696097 AACCACTCCAACGTCAGCCT 61.696 55.000 0.00 0.00 0.00 4.58
457 564 1.669115 CCACTCCAACGTCAGCCTG 60.669 63.158 0.00 0.00 0.00 4.85
458 565 2.031163 ACTCCAACGTCAGCCTGC 59.969 61.111 0.00 0.00 0.00 4.85
459 566 2.743928 CTCCAACGTCAGCCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
460 567 3.535629 CTCCAACGTCAGCCTGCCA 62.536 63.158 0.00 0.00 0.00 4.92
461 568 2.594303 CCAACGTCAGCCTGCCAA 60.594 61.111 0.00 0.00 0.00 4.52
462 569 2.192861 CCAACGTCAGCCTGCCAAA 61.193 57.895 0.00 0.00 0.00 3.28
463 570 1.008538 CAACGTCAGCCTGCCAAAC 60.009 57.895 0.00 0.00 0.00 2.93
464 571 1.453015 AACGTCAGCCTGCCAAACA 60.453 52.632 0.00 0.00 0.00 2.83
465 572 1.034838 AACGTCAGCCTGCCAAACAA 61.035 50.000 0.00 0.00 0.00 2.83
466 573 1.008538 CGTCAGCCTGCCAAACAAC 60.009 57.895 0.00 0.00 0.00 3.32
467 574 1.363807 GTCAGCCTGCCAAACAACC 59.636 57.895 0.00 0.00 0.00 3.77
468 575 1.109323 GTCAGCCTGCCAAACAACCT 61.109 55.000 0.00 0.00 0.00 3.50
469 576 0.476338 TCAGCCTGCCAAACAACCTA 59.524 50.000 0.00 0.00 0.00 3.08
470 577 1.075374 TCAGCCTGCCAAACAACCTAT 59.925 47.619 0.00 0.00 0.00 2.57
471 578 1.895131 CAGCCTGCCAAACAACCTATT 59.105 47.619 0.00 0.00 0.00 1.73
472 579 2.299867 CAGCCTGCCAAACAACCTATTT 59.700 45.455 0.00 0.00 0.00 1.40
473 580 3.509575 CAGCCTGCCAAACAACCTATTTA 59.490 43.478 0.00 0.00 0.00 1.40
474 581 3.763897 AGCCTGCCAAACAACCTATTTAG 59.236 43.478 0.00 0.00 0.00 1.85
475 582 3.761752 GCCTGCCAAACAACCTATTTAGA 59.238 43.478 0.00 0.00 0.00 2.10
476 583 4.380550 GCCTGCCAAACAACCTATTTAGAC 60.381 45.833 0.00 0.00 0.00 2.59
477 584 5.010282 CCTGCCAAACAACCTATTTAGACT 58.990 41.667 0.00 0.00 0.00 3.24
478 585 5.476945 CCTGCCAAACAACCTATTTAGACTT 59.523 40.000 0.00 0.00 0.00 3.01
479 586 6.015434 CCTGCCAAACAACCTATTTAGACTTT 60.015 38.462 0.00 0.00 0.00 2.66
480 587 6.977213 TGCCAAACAACCTATTTAGACTTTC 58.023 36.000 0.00 0.00 0.00 2.62
481 588 6.775629 TGCCAAACAACCTATTTAGACTTTCT 59.224 34.615 0.00 0.00 0.00 2.52
482 589 7.040686 TGCCAAACAACCTATTTAGACTTTCTC 60.041 37.037 0.00 0.00 0.00 2.87
483 590 7.519002 CCAAACAACCTATTTAGACTTTCTCG 58.481 38.462 0.00 0.00 0.00 4.04
484 591 7.360946 CCAAACAACCTATTTAGACTTTCTCGG 60.361 40.741 0.00 0.00 0.00 4.63
485 592 6.600882 ACAACCTATTTAGACTTTCTCGGA 57.399 37.500 0.00 0.00 0.00 4.55
486 593 7.184067 ACAACCTATTTAGACTTTCTCGGAT 57.816 36.000 0.00 0.00 0.00 4.18
487 594 7.621796 ACAACCTATTTAGACTTTCTCGGATT 58.378 34.615 0.00 0.00 0.00 3.01
488 595 8.101419 ACAACCTATTTAGACTTTCTCGGATTT 58.899 33.333 0.00 0.00 0.00 2.17
489 596 8.947115 CAACCTATTTAGACTTTCTCGGATTTT 58.053 33.333 0.00 0.00 0.00 1.82
490 597 8.719560 ACCTATTTAGACTTTCTCGGATTTTC 57.280 34.615 0.00 0.00 0.00 2.29
491 598 8.319146 ACCTATTTAGACTTTCTCGGATTTTCA 58.681 33.333 0.00 0.00 0.00 2.69
492 599 8.821894 CCTATTTAGACTTTCTCGGATTTTCAG 58.178 37.037 0.00 0.00 0.00 3.02
493 600 9.587772 CTATTTAGACTTTCTCGGATTTTCAGA 57.412 33.333 0.00 0.00 0.00 3.27
494 601 8.848474 ATTTAGACTTTCTCGGATTTTCAGAA 57.152 30.769 0.00 0.00 0.00 3.02
495 602 8.848474 TTTAGACTTTCTCGGATTTTCAGAAT 57.152 30.769 0.00 0.00 0.00 2.40
496 603 8.848474 TTAGACTTTCTCGGATTTTCAGAATT 57.152 30.769 0.00 0.00 0.00 2.17
497 604 9.938280 TTAGACTTTCTCGGATTTTCAGAATTA 57.062 29.630 0.00 0.00 0.00 1.40
498 605 8.485976 AGACTTTCTCGGATTTTCAGAATTAG 57.514 34.615 0.00 0.00 0.00 1.73
499 606 7.550906 AGACTTTCTCGGATTTTCAGAATTAGG 59.449 37.037 0.00 0.00 0.00 2.69
500 607 7.168905 ACTTTCTCGGATTTTCAGAATTAGGT 58.831 34.615 0.00 0.00 0.00 3.08
501 608 6.985188 TTCTCGGATTTTCAGAATTAGGTG 57.015 37.500 0.00 0.00 0.00 4.00
502 609 6.294361 TCTCGGATTTTCAGAATTAGGTGA 57.706 37.500 0.00 0.00 0.00 4.02
503 610 6.889198 TCTCGGATTTTCAGAATTAGGTGAT 58.111 36.000 0.00 0.00 0.00 3.06
504 611 8.018537 TCTCGGATTTTCAGAATTAGGTGATA 57.981 34.615 0.00 0.00 0.00 2.15
505 612 8.651389 TCTCGGATTTTCAGAATTAGGTGATAT 58.349 33.333 0.00 0.00 0.00 1.63
506 613 9.277783 CTCGGATTTTCAGAATTAGGTGATATT 57.722 33.333 0.00 0.00 0.00 1.28
515 622 9.337714 TCAGAATTAGGTGATATTATCCATCCA 57.662 33.333 1.27 0.00 0.00 3.41
518 625 9.265901 GAATTAGGTGATATTATCCATCCATCG 57.734 37.037 1.27 0.00 0.00 3.84
519 626 7.733773 TTAGGTGATATTATCCATCCATCGT 57.266 36.000 1.27 0.00 0.00 3.73
520 627 8.832458 TTAGGTGATATTATCCATCCATCGTA 57.168 34.615 1.27 0.00 0.00 3.43
521 628 7.733773 AGGTGATATTATCCATCCATCGTAA 57.266 36.000 1.27 0.00 0.00 3.18
522 629 8.324191 AGGTGATATTATCCATCCATCGTAAT 57.676 34.615 1.27 0.00 0.00 1.89
523 630 8.772250 AGGTGATATTATCCATCCATCGTAATT 58.228 33.333 1.27 0.00 0.00 1.40
524 631 9.046296 GGTGATATTATCCATCCATCGTAATTC 57.954 37.037 1.27 0.00 0.00 2.17
525 632 9.046296 GTGATATTATCCATCCATCGTAATTCC 57.954 37.037 1.27 0.00 0.00 3.01
526 633 8.992349 TGATATTATCCATCCATCGTAATTCCT 58.008 33.333 1.27 0.00 0.00 3.36
527 634 9.265901 GATATTATCCATCCATCGTAATTCCTG 57.734 37.037 0.00 0.00 0.00 3.86
528 635 3.126001 TCCATCCATCGTAATTCCTGC 57.874 47.619 0.00 0.00 0.00 4.85
529 636 2.154462 CCATCCATCGTAATTCCTGCC 58.846 52.381 0.00 0.00 0.00 4.85
530 637 2.487086 CCATCCATCGTAATTCCTGCCA 60.487 50.000 0.00 0.00 0.00 4.92
531 638 3.213506 CATCCATCGTAATTCCTGCCAA 58.786 45.455 0.00 0.00 0.00 4.52
532 639 3.576078 TCCATCGTAATTCCTGCCAAT 57.424 42.857 0.00 0.00 0.00 3.16
533 640 4.698201 TCCATCGTAATTCCTGCCAATA 57.302 40.909 0.00 0.00 0.00 1.90
534 641 5.241403 TCCATCGTAATTCCTGCCAATAT 57.759 39.130 0.00 0.00 0.00 1.28
535 642 5.245531 TCCATCGTAATTCCTGCCAATATC 58.754 41.667 0.00 0.00 0.00 1.63
536 643 5.013079 TCCATCGTAATTCCTGCCAATATCT 59.987 40.000 0.00 0.00 0.00 1.98
537 644 5.352569 CCATCGTAATTCCTGCCAATATCTC 59.647 44.000 0.00 0.00 0.00 2.75
538 645 5.808366 TCGTAATTCCTGCCAATATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
539 646 5.784177 TCGTAATTCCTGCCAATATCTCTC 58.216 41.667 0.00 0.00 0.00 3.20
540 647 5.540337 TCGTAATTCCTGCCAATATCTCTCT 59.460 40.000 0.00 0.00 0.00 3.10
541 648 6.719829 TCGTAATTCCTGCCAATATCTCTCTA 59.280 38.462 0.00 0.00 0.00 2.43
542 649 6.809196 CGTAATTCCTGCCAATATCTCTCTAC 59.191 42.308 0.00 0.00 0.00 2.59
543 650 5.753721 ATTCCTGCCAATATCTCTCTACC 57.246 43.478 0.00 0.00 0.00 3.18
544 651 3.157881 TCCTGCCAATATCTCTCTACCG 58.842 50.000 0.00 0.00 0.00 4.02
545 652 3.157881 CCTGCCAATATCTCTCTACCGA 58.842 50.000 0.00 0.00 0.00 4.69
546 653 3.574396 CCTGCCAATATCTCTCTACCGAA 59.426 47.826 0.00 0.00 0.00 4.30
547 654 4.039245 CCTGCCAATATCTCTCTACCGAAA 59.961 45.833 0.00 0.00 0.00 3.46
548 655 5.201713 TGCCAATATCTCTCTACCGAAAG 57.798 43.478 0.00 0.00 0.00 2.62
549 656 4.893524 TGCCAATATCTCTCTACCGAAAGA 59.106 41.667 0.00 0.00 0.00 2.52
550 657 5.540337 TGCCAATATCTCTCTACCGAAAGAT 59.460 40.000 0.00 0.00 33.27 2.40
551 658 6.096695 GCCAATATCTCTCTACCGAAAGATC 58.903 44.000 0.00 0.00 31.25 2.75
552 659 6.626302 CCAATATCTCTCTACCGAAAGATCC 58.374 44.000 0.00 0.00 31.25 3.36
553 660 6.350612 CCAATATCTCTCTACCGAAAGATCCC 60.351 46.154 0.00 0.00 31.25 3.85
554 661 2.573369 TCTCTCTACCGAAAGATCCCG 58.427 52.381 0.00 0.00 0.00 5.14
555 662 2.172082 TCTCTCTACCGAAAGATCCCGA 59.828 50.000 1.92 0.00 0.00 5.14
556 663 2.291190 CTCTCTACCGAAAGATCCCGAC 59.709 54.545 1.92 0.00 0.00 4.79
557 664 2.022195 CTCTACCGAAAGATCCCGACA 58.978 52.381 1.92 0.00 0.00 4.35
558 665 2.426024 CTCTACCGAAAGATCCCGACAA 59.574 50.000 1.92 0.00 0.00 3.18
559 666 2.827322 TCTACCGAAAGATCCCGACAAA 59.173 45.455 1.92 0.00 0.00 2.83
560 667 1.804601 ACCGAAAGATCCCGACAAAC 58.195 50.000 1.92 0.00 0.00 2.93
561 668 1.346722 ACCGAAAGATCCCGACAAACT 59.653 47.619 1.92 0.00 0.00 2.66
562 669 1.732259 CCGAAAGATCCCGACAAACTG 59.268 52.381 1.92 0.00 0.00 3.16
563 670 2.413837 CGAAAGATCCCGACAAACTGT 58.586 47.619 0.00 0.00 0.00 3.55
564 671 2.157668 CGAAAGATCCCGACAAACTGTG 59.842 50.000 0.00 0.00 0.00 3.66
565 672 3.399330 GAAAGATCCCGACAAACTGTGA 58.601 45.455 0.00 0.00 0.00 3.58
566 673 2.457366 AGATCCCGACAAACTGTGAC 57.543 50.000 0.00 0.00 0.00 3.67
567 674 1.691976 AGATCCCGACAAACTGTGACA 59.308 47.619 0.00 0.00 0.00 3.58
568 675 2.069273 GATCCCGACAAACTGTGACAG 58.931 52.381 11.70 11.70 37.52 3.51
570 677 1.202486 TCCCGACAAACTGTGACAGTC 60.202 52.381 19.71 5.66 44.62 3.51
571 678 1.472552 CCCGACAAACTGTGACAGTCA 60.473 52.381 19.71 0.00 44.62 3.41
572 679 2.276201 CCGACAAACTGTGACAGTCAA 58.724 47.619 19.71 0.00 44.62 3.18
573 680 2.030457 CCGACAAACTGTGACAGTCAAC 59.970 50.000 19.71 9.85 44.62 3.18
574 681 2.930040 CGACAAACTGTGACAGTCAACT 59.070 45.455 19.71 0.00 44.62 3.16
575 682 4.109766 CGACAAACTGTGACAGTCAACTA 58.890 43.478 19.71 0.00 44.62 2.24
580 687 3.211865 ACTGTGACAGTCAACTACGAGA 58.788 45.455 13.33 0.00 41.21 4.04
587 694 3.128938 ACAGTCAACTACGAGATGCCTAC 59.871 47.826 0.00 0.00 0.00 3.18
591 698 2.615447 CAACTACGAGATGCCTACGGTA 59.385 50.000 0.00 0.00 0.00 4.02
596 703 2.098770 ACGAGATGCCTACGGTAACTTC 59.901 50.000 0.00 0.00 0.00 3.01
604 711 5.237048 TGCCTACGGTAACTTCGTAAAATT 58.763 37.500 0.00 0.00 41.62 1.82
640 747 0.820871 ACTCAATCTCTCGGAGGTGC 59.179 55.000 4.96 0.00 32.98 5.01
655 762 1.755384 GTGCTCATAGGGGTAGGGC 59.245 63.158 0.00 0.00 0.00 5.19
659 766 0.759436 CTCATAGGGGTAGGGCGTGT 60.759 60.000 0.00 0.00 0.00 4.49
660 767 1.046472 TCATAGGGGTAGGGCGTGTG 61.046 60.000 0.00 0.00 0.00 3.82
672 779 3.151798 CGTGTGTGCGCGTTCATA 58.848 55.556 8.43 2.84 42.94 2.15
673 780 1.225368 CGTGTGTGCGCGTTCATAC 60.225 57.895 8.43 14.19 42.94 2.39
688 795 4.421058 GTTCATACGAGTGAGTGTATGCA 58.579 43.478 7.34 0.00 44.76 3.96
689 796 4.918810 TCATACGAGTGAGTGTATGCAT 57.081 40.909 3.79 3.79 44.76 3.96
690 797 4.610945 TCATACGAGTGAGTGTATGCATG 58.389 43.478 10.16 0.00 44.76 4.06
691 798 4.097892 TCATACGAGTGAGTGTATGCATGT 59.902 41.667 10.16 0.00 44.76 3.21
692 799 5.298276 TCATACGAGTGAGTGTATGCATGTA 59.702 40.000 10.16 0.00 44.76 2.29
693 800 4.655762 ACGAGTGAGTGTATGCATGTAT 57.344 40.909 10.16 0.82 0.00 2.29
694 801 5.767816 ACGAGTGAGTGTATGCATGTATA 57.232 39.130 10.16 0.00 0.00 1.47
695 802 6.332735 ACGAGTGAGTGTATGCATGTATAT 57.667 37.500 10.16 0.00 0.00 0.86
696 803 7.448748 ACGAGTGAGTGTATGCATGTATATA 57.551 36.000 10.16 1.36 0.00 0.86
697 804 7.306213 ACGAGTGAGTGTATGCATGTATATAC 58.694 38.462 18.68 18.68 0.00 1.47
698 805 6.466097 CGAGTGAGTGTATGCATGTATATACG 59.534 42.308 19.67 7.86 33.52 3.06
699 806 7.448748 AGTGAGTGTATGCATGTATATACGA 57.551 36.000 19.67 11.24 33.52 3.43
700 807 7.530863 AGTGAGTGTATGCATGTATATACGAG 58.469 38.462 19.67 4.47 33.52 4.18
701 808 6.251589 GTGAGTGTATGCATGTATATACGAGC 59.748 42.308 19.67 17.65 33.52 5.03
702 809 6.072175 TGAGTGTATGCATGTATATACGAGCA 60.072 38.462 24.99 24.99 40.86 4.26
703 810 6.687604 AGTGTATGCATGTATATACGAGCAA 58.312 36.000 25.95 16.68 40.31 3.91
704 811 7.323420 AGTGTATGCATGTATATACGAGCAAT 58.677 34.615 25.95 18.96 40.31 3.56
705 812 7.819415 AGTGTATGCATGTATATACGAGCAATT 59.181 33.333 25.95 17.39 40.31 2.32
706 813 7.899841 GTGTATGCATGTATATACGAGCAATTG 59.100 37.037 25.95 0.00 40.31 2.32
707 814 5.281693 TGCATGTATATACGAGCAATTGC 57.718 39.130 23.05 23.05 36.25 3.56
717 824 1.078709 GAGCAATTGCGTCTGTGCTA 58.921 50.000 24.02 0.00 46.99 3.49
718 825 1.667724 GAGCAATTGCGTCTGTGCTAT 59.332 47.619 24.02 2.87 46.99 2.97
719 826 1.399440 AGCAATTGCGTCTGTGCTATG 59.601 47.619 24.02 0.00 45.26 2.23
720 827 1.131126 GCAATTGCGTCTGTGCTATGT 59.869 47.619 15.87 0.00 34.13 2.29
721 828 2.414559 GCAATTGCGTCTGTGCTATGTT 60.415 45.455 15.87 0.00 34.13 2.71
722 829 3.419915 CAATTGCGTCTGTGCTATGTTC 58.580 45.455 0.00 0.00 35.36 3.18
723 830 2.162319 TTGCGTCTGTGCTATGTTCA 57.838 45.000 0.00 0.00 35.36 3.18
724 831 1.713597 TGCGTCTGTGCTATGTTCAG 58.286 50.000 0.00 0.00 35.36 3.02
725 832 1.272212 TGCGTCTGTGCTATGTTCAGA 59.728 47.619 0.00 0.00 36.12 3.27
726 833 2.288763 TGCGTCTGTGCTATGTTCAGAA 60.289 45.455 0.00 0.00 39.42 3.02
727 834 2.736721 GCGTCTGTGCTATGTTCAGAAA 59.263 45.455 0.00 0.00 39.42 2.52
728 835 3.372206 GCGTCTGTGCTATGTTCAGAAAT 59.628 43.478 0.00 0.00 39.42 2.17
729 836 4.566759 GCGTCTGTGCTATGTTCAGAAATA 59.433 41.667 0.00 0.00 39.42 1.40
730 837 5.063438 GCGTCTGTGCTATGTTCAGAAATAA 59.937 40.000 0.00 0.00 39.42 1.40
731 838 6.238211 GCGTCTGTGCTATGTTCAGAAATAAT 60.238 38.462 0.00 0.00 39.42 1.28
732 839 7.042725 GCGTCTGTGCTATGTTCAGAAATAATA 60.043 37.037 0.00 0.00 39.42 0.98
733 840 8.817100 CGTCTGTGCTATGTTCAGAAATAATAA 58.183 33.333 0.00 0.00 39.42 1.40
850 958 2.433664 GCCGTTGATTCCCGTCGT 60.434 61.111 0.00 0.00 0.00 4.34
1329 1498 3.819920 TGCGAGGCAGAGCTCGAG 61.820 66.667 8.45 8.45 44.85 4.04
1344 1513 0.521867 TCGAGAATGTACGTTCGCCG 60.522 55.000 25.78 25.78 44.03 6.46
1366 1535 1.737793 GACCCACTTAGTTGGAATGCG 59.262 52.381 9.60 0.00 39.24 4.73
1427 1596 1.731433 CCATGGAATCAGGCCGCAAG 61.731 60.000 5.56 0.00 0.00 4.01
1435 1604 0.667993 TCAGGCCGCAAGTTTTTCTG 59.332 50.000 0.00 0.00 0.00 3.02
1501 1670 1.523758 ACAAGGACATCAAAGTCGGC 58.476 50.000 0.00 0.00 39.42 5.54
1560 1735 5.932303 TCACCATTACCTCTTCTTTTTCTCG 59.068 40.000 0.00 0.00 0.00 4.04
1567 1747 4.049186 CCTCTTCTTTTTCTCGTTCGACA 58.951 43.478 0.00 0.00 0.00 4.35
1573 1753 2.570468 TTTCTCGTTCGACAATTGCG 57.430 45.000 5.05 10.43 0.00 4.85
1577 1757 2.131407 CGTTCGACAATTGCGTGCG 61.131 57.895 17.57 17.48 0.00 5.34
1606 1786 6.093404 CGTAAGCTTCTTGATCACTCACTAA 58.907 40.000 0.00 0.00 0.00 2.24
1607 1787 6.034044 CGTAAGCTTCTTGATCACTCACTAAC 59.966 42.308 0.00 0.00 0.00 2.34
1608 1788 4.826556 AGCTTCTTGATCACTCACTAACC 58.173 43.478 0.00 0.00 0.00 2.85
1610 1790 4.629200 GCTTCTTGATCACTCACTAACCAG 59.371 45.833 0.00 0.00 0.00 4.00
1669 1856 3.131396 GCCAAACGGACAGATATTCGAT 58.869 45.455 0.00 0.00 0.00 3.59
1689 1876 2.228545 AGGTGAGAGATCACTGAGCA 57.771 50.000 10.91 0.00 40.28 4.26
1690 1877 1.824230 AGGTGAGAGATCACTGAGCAC 59.176 52.381 10.91 6.73 40.28 4.40
1692 1879 2.168106 GGTGAGAGATCACTGAGCACAT 59.832 50.000 8.18 0.00 40.28 3.21
1693 1880 3.369261 GGTGAGAGATCACTGAGCACATT 60.369 47.826 8.18 0.00 40.28 2.71
1694 1881 4.252073 GTGAGAGATCACTGAGCACATTT 58.748 43.478 0.00 0.00 37.62 2.32
1695 1882 4.093115 GTGAGAGATCACTGAGCACATTTG 59.907 45.833 0.00 0.00 37.62 2.32
1696 1883 3.607741 AGAGATCACTGAGCACATTTGG 58.392 45.455 0.00 0.00 0.00 3.28
1697 1884 2.089980 AGATCACTGAGCACATTTGGC 58.910 47.619 0.00 0.00 0.00 4.52
1726 1930 3.731565 GCATTCAGCGTGCACATAATTGA 60.732 43.478 18.64 9.36 42.08 2.57
1728 1932 4.700268 TTCAGCGTGCACATAATTGATT 57.300 36.364 18.64 0.00 0.00 2.57
1749 1953 8.289939 TGATTAGTAACACTTCGTCCTCTTAT 57.710 34.615 0.00 0.00 0.00 1.73
1750 1954 9.399797 TGATTAGTAACACTTCGTCCTCTTATA 57.600 33.333 0.00 0.00 0.00 0.98
1828 2032 0.037590 TGGCGCAGGACAGGTATTTT 59.962 50.000 10.83 0.00 0.00 1.82
1844 2048 5.366768 AGGTATTTTACTGCAGGCTCTGATA 59.633 40.000 19.93 5.76 32.44 2.15
1898 2119 4.215742 CAGCCATTGCATGCCCCG 62.216 66.667 16.68 2.56 41.13 5.73
1899 2120 4.445710 AGCCATTGCATGCCCCGA 62.446 61.111 16.68 0.00 41.13 5.14
1902 2123 1.829096 CCATTGCATGCCCCGATGA 60.829 57.895 16.68 0.00 0.00 2.92
1906 2127 0.323269 TTGCATGCCCCGATGAAAGA 60.323 50.000 16.68 0.00 0.00 2.52
1954 2175 4.034975 GCTGTGAATTGATCTGAACCTAGC 59.965 45.833 0.00 0.00 0.00 3.42
1969 2190 7.284489 TCTGAACCTAGCAAACACTGTTTATTT 59.716 33.333 6.84 0.00 0.00 1.40
1970 2191 7.777095 TGAACCTAGCAAACACTGTTTATTTT 58.223 30.769 6.84 0.00 0.00 1.82
1971 2192 7.704472 TGAACCTAGCAAACACTGTTTATTTTG 59.296 33.333 6.84 0.00 33.03 2.44
1973 2194 7.200455 ACCTAGCAAACACTGTTTATTTTGAC 58.800 34.615 6.84 0.00 31.79 3.18
1974 2195 7.147983 ACCTAGCAAACACTGTTTATTTTGACA 60.148 33.333 6.84 0.00 31.79 3.58
1984 2257 4.219033 GTTTATTTTGACAGTGCTCACCG 58.781 43.478 0.00 0.00 0.00 4.94
1987 2260 0.874175 TTTGACAGTGCTCACCGTCG 60.874 55.000 10.64 0.00 40.62 5.12
1995 2268 0.317160 TGCTCACCGTCGTCTTCAAT 59.683 50.000 0.00 0.00 0.00 2.57
2007 2280 4.995487 GTCGTCTTCAATGGATATAACCCC 59.005 45.833 0.00 0.00 0.00 4.95
2009 2282 4.997395 CGTCTTCAATGGATATAACCCCTG 59.003 45.833 0.00 0.00 0.00 4.45
2010 2283 5.454755 CGTCTTCAATGGATATAACCCCTGT 60.455 44.000 0.00 0.00 0.00 4.00
2012 2285 6.263168 GTCTTCAATGGATATAACCCCTGTTG 59.737 42.308 0.00 0.00 35.87 3.33
2013 2286 4.469657 TCAATGGATATAACCCCTGTTGC 58.530 43.478 0.00 0.00 35.87 4.17
2019 2292 7.395525 TGGATATAACCCCTGTTGCTAATAA 57.604 36.000 0.00 0.00 35.87 1.40
2020 2293 7.817440 TGGATATAACCCCTGTTGCTAATAAA 58.183 34.615 0.00 0.00 35.87 1.40
2021 2294 8.452868 TGGATATAACCCCTGTTGCTAATAAAT 58.547 33.333 0.00 0.00 35.87 1.40
2022 2295 9.969001 GGATATAACCCCTGTTGCTAATAAATA 57.031 33.333 0.00 0.00 35.87 1.40
2050 2323 9.027129 CACGATTAAATGAATTTCATGCTCATT 57.973 29.630 12.50 5.73 40.62 2.57
2051 2324 9.241317 ACGATTAAATGAATTTCATGCTCATTC 57.759 29.630 12.50 5.34 38.52 2.67
2057 2330 9.760077 AAATGAATTTCATGCTCATTCTTATCC 57.240 29.630 12.50 0.00 38.52 2.59
2066 2339 4.820173 TGCTCATTCTTATCCTCTGCAATG 59.180 41.667 0.00 0.00 0.00 2.82
2067 2340 4.820716 GCTCATTCTTATCCTCTGCAATGT 59.179 41.667 0.00 0.00 0.00 2.71
2068 2341 5.994054 GCTCATTCTTATCCTCTGCAATGTA 59.006 40.000 0.00 0.00 0.00 2.29
2070 2343 7.365497 TCATTCTTATCCTCTGCAATGTAGA 57.635 36.000 0.35 0.35 0.00 2.59
2071 2344 7.212976 TCATTCTTATCCTCTGCAATGTAGAC 58.787 38.462 0.00 0.00 0.00 2.59
2072 2345 6.798427 TTCTTATCCTCTGCAATGTAGACT 57.202 37.500 0.00 0.00 0.00 3.24
2073 2346 7.898014 TTCTTATCCTCTGCAATGTAGACTA 57.102 36.000 0.00 0.00 0.00 2.59
2074 2347 7.898014 TCTTATCCTCTGCAATGTAGACTAA 57.102 36.000 0.00 0.00 0.00 2.24
2087 2360 7.905493 GCAATGTAGACTAATAACAAGCAGTTC 59.095 37.037 0.00 0.00 41.64 3.01
2102 2375 4.015084 AGCAGTTCTGCTTCATTGCTTAT 58.985 39.130 19.80 0.00 43.52 1.73
2115 2388 7.308469 GCTTCATTGCTTATCCTAGGAAATCTG 60.308 40.741 17.30 7.52 0.00 2.90
2116 2389 6.537355 TCATTGCTTATCCTAGGAAATCTGG 58.463 40.000 17.30 4.54 0.00 3.86
2119 2392 6.365970 TGCTTATCCTAGGAAATCTGGATC 57.634 41.667 17.30 0.00 39.67 3.36
2120 2393 5.846164 TGCTTATCCTAGGAAATCTGGATCA 59.154 40.000 17.30 1.98 39.67 2.92
2164 2449 4.098349 TCAAAGTATCAGATTTGGCATGGC 59.902 41.667 13.29 13.29 37.09 4.40
2170 2455 1.203052 CAGATTTGGCATGGCGTTCTT 59.797 47.619 15.27 0.00 0.00 2.52
2173 2458 0.316841 TTTGGCATGGCGTTCTTTCC 59.683 50.000 15.27 0.00 0.00 3.13
2181 2466 3.140325 TGGCGTTCTTTCCTCTCATTT 57.860 42.857 0.00 0.00 0.00 2.32
2186 2471 6.706270 TGGCGTTCTTTCCTCTCATTTATATC 59.294 38.462 0.00 0.00 0.00 1.63
2249 2534 3.040147 TGTCGATGAAAGTTGGAGGAC 57.960 47.619 0.00 0.00 0.00 3.85
2251 2536 2.996621 GTCGATGAAAGTTGGAGGACTG 59.003 50.000 0.00 0.00 0.00 3.51
2281 2566 2.685850 ACATACCCGGTCAAGTAAGC 57.314 50.000 0.00 0.00 0.00 3.09
2322 2607 2.593346 ACAAAGCAATGCCGAAAACA 57.407 40.000 0.00 0.00 0.00 2.83
2343 2628 7.954788 AACAAAACAAAACAAAACTAGCTGA 57.045 28.000 0.00 0.00 0.00 4.26
2359 2644 3.973657 AGCTGATGTGCAAGAAAACTTG 58.026 40.909 0.00 0.00 37.39 3.16
2373 2658 5.269189 AGAAAACTTGACCTTTTCCTCCAA 58.731 37.500 0.00 0.00 38.05 3.53
2374 2659 5.899547 AGAAAACTTGACCTTTTCCTCCAAT 59.100 36.000 0.00 0.00 38.05 3.16
2375 2660 5.535753 AAACTTGACCTTTTCCTCCAATG 57.464 39.130 0.00 0.00 0.00 2.82
2376 2661 4.453480 ACTTGACCTTTTCCTCCAATGA 57.547 40.909 0.00 0.00 0.00 2.57
2377 2662 5.003096 ACTTGACCTTTTCCTCCAATGAT 57.997 39.130 0.00 0.00 0.00 2.45
2378 2663 5.012893 ACTTGACCTTTTCCTCCAATGATC 58.987 41.667 0.00 0.00 0.00 2.92
2441 2726 6.271585 ACAGGATAGTGATGATTTCCCATT 57.728 37.500 0.00 0.00 0.00 3.16
2449 2734 7.543359 AGTGATGATTTCCCATTTTCTTGAA 57.457 32.000 0.00 0.00 0.00 2.69
2481 2766 1.495148 GCATTCCCTAAGGGCCTTACT 59.505 52.381 22.01 0.97 43.94 2.24
2487 2772 1.559682 CCTAAGGGCCTTACTTCAGCA 59.440 52.381 22.01 1.17 0.00 4.41
2493 2778 1.980052 CCTTACTTCAGCACCCGGA 59.020 57.895 0.73 0.00 0.00 5.14
2547 2832 6.595794 CGTATTTGACGTCAACCTATTGTTT 58.404 36.000 29.74 9.17 46.86 2.83
2584 2869 3.308053 CGACGATGAGTGAAAGCATCATT 59.692 43.478 0.00 0.00 40.97 2.57
2680 2965 5.637006 TGTTTTCGGCAGCAAATTATACT 57.363 34.783 0.00 0.00 0.00 2.12
2732 3018 3.716601 CAACCTTGGTTGTGAATGGAAC 58.283 45.455 20.87 0.00 0.00 3.62
2816 3102 3.135225 CGTGGAGATTTGGTGTGTGTTA 58.865 45.455 0.00 0.00 0.00 2.41
2817 3103 3.562141 CGTGGAGATTTGGTGTGTGTTAA 59.438 43.478 0.00 0.00 0.00 2.01
2917 3205 8.617290 AGTCTTTCAATAAATACACGGTTCTT 57.383 30.769 0.00 0.00 0.00 2.52
3022 3311 5.305644 TGGTTTGTGCAATTAACCCAACTAT 59.694 36.000 18.12 0.00 40.44 2.12
3032 3324 7.906527 GCAATTAACCCAACTATTAACGTACTG 59.093 37.037 0.00 0.00 0.00 2.74
3049 3341 5.694910 ACGTACTGTATTGGTGAGTCTTTTG 59.305 40.000 0.00 0.00 0.00 2.44
3060 3352 7.639113 TGGTGAGTCTTTTGAAAAACACTAT 57.361 32.000 12.64 0.00 29.16 2.12
3062 3354 7.973388 TGGTGAGTCTTTTGAAAAACACTATTG 59.027 33.333 12.64 0.00 29.16 1.90
3084 3376 8.970691 ATTGTAAATTACACTTGACAGATTGC 57.029 30.769 5.19 0.00 38.63 3.56
3155 3447 2.663826 AGAACGCAGAGAGGACATTC 57.336 50.000 0.00 0.00 0.00 2.67
3251 3543 1.137404 CATACAAAGGCCAGCGCAC 59.863 57.895 11.47 0.00 36.38 5.34
3349 3641 4.033358 CGAAGAATCTGCATGAGTTGGTAC 59.967 45.833 0.00 0.00 0.00 3.34
3365 3657 5.659079 AGTTGGTACCATTTTCCTTCAACAA 59.341 36.000 17.17 0.00 36.63 2.83
3396 3688 3.181443 ACCTGTAGACCCCAGAAGTTTTG 60.181 47.826 0.00 0.00 31.38 2.44
3413 3706 4.091424 GTTTTGAATCCGAAGAATCTGCG 58.909 43.478 3.09 3.09 31.28 5.18
3446 3739 7.926018 GGTAACATTTTCCTTCAACAAACATCT 59.074 33.333 0.00 0.00 0.00 2.90
3470 3763 2.764572 ACCTGTAGACCCCATAAGAACG 59.235 50.000 0.00 0.00 0.00 3.95
3471 3764 2.764572 CCTGTAGACCCCATAAGAACGT 59.235 50.000 0.00 0.00 0.00 3.99
3476 3769 4.732672 AGACCCCATAAGAACGTAACTC 57.267 45.455 0.00 0.00 0.00 3.01
3483 3776 6.092259 CCCCATAAGAACGTAACTCTTTCTTG 59.908 42.308 6.31 3.53 42.12 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.276421 CGTCTCATCCTCCTTGTTGGT 59.724 52.381 0.00 0.00 37.07 3.67
40 41 1.406069 CCCGTCTCATCCTCCTTGTTG 60.406 57.143 0.00 0.00 0.00 3.33
41 42 0.905357 CCCGTCTCATCCTCCTTGTT 59.095 55.000 0.00 0.00 0.00 2.83
58 59 3.459063 CCCTTCGTCTCCGACCCC 61.459 72.222 0.00 0.00 44.13 4.95
86 87 2.208431 GACTTCAATCTCCGATGGCAG 58.792 52.381 0.00 0.00 0.00 4.85
91 92 3.669354 GGCGACTTCAATCTCCGAT 57.331 52.632 0.00 0.00 0.00 4.18
154 155 2.457366 ACCTTAGTTCTTGCCACGAG 57.543 50.000 0.00 0.00 0.00 4.18
169 170 1.544759 CGCTAGGACAAACCCAACCTT 60.545 52.381 0.00 0.00 40.05 3.50
184 185 3.006659 CTAGCTCACCTTTAGCGCTAG 57.993 52.381 17.98 8.85 44.87 3.42
212 213 3.974296 TTATCCACCCCGCCCCCTT 62.974 63.158 0.00 0.00 0.00 3.95
213 214 4.441584 TTATCCACCCCGCCCCCT 62.442 66.667 0.00 0.00 0.00 4.79
214 215 4.199672 GTTATCCACCCCGCCCCC 62.200 72.222 0.00 0.00 0.00 5.40
215 216 3.413300 TGTTATCCACCCCGCCCC 61.413 66.667 0.00 0.00 0.00 5.80
216 217 2.124445 GTGTTATCCACCCCGCCC 60.124 66.667 0.00 0.00 38.18 6.13
217 218 1.001887 TTGTGTTATCCACCCCGCC 60.002 57.895 0.00 0.00 43.85 6.13
218 219 1.029947 CCTTGTGTTATCCACCCCGC 61.030 60.000 0.00 0.00 43.85 6.13
219 220 0.616371 TCCTTGTGTTATCCACCCCG 59.384 55.000 0.00 0.00 43.85 5.73
228 229 0.250553 CCAAGCGGGTCCTTGTGTTA 60.251 55.000 0.00 0.00 40.40 2.41
282 283 9.378551 CATACTGGTTGTAAAGTACACATGTAT 57.621 33.333 0.00 0.00 38.63 2.29
287 288 6.818233 TCACATACTGGTTGTAAAGTACACA 58.182 36.000 0.00 0.00 38.63 3.72
288 289 7.900782 ATCACATACTGGTTGTAAAGTACAC 57.099 36.000 0.00 0.00 38.63 2.90
293 294 8.567948 ACTGAAAATCACATACTGGTTGTAAAG 58.432 33.333 0.00 0.00 34.45 1.85
304 305 7.582435 TCTTTCTCGACTGAAAATCACATAC 57.418 36.000 2.02 0.00 35.79 2.39
314 315 4.928601 TCTCGTTTTCTTTCTCGACTGAA 58.071 39.130 0.00 0.00 0.00 3.02
318 319 3.358407 CGTCTCTCGTTTTCTTTCTCGAC 59.642 47.826 0.00 0.00 34.52 4.20
319 320 3.552541 CGTCTCTCGTTTTCTTTCTCGA 58.447 45.455 0.00 0.00 34.52 4.04
356 463 7.603404 TGTTTTCTAGCGCTTTACACCTATAAA 59.397 33.333 18.68 0.00 0.00 1.40
372 479 6.405176 CCCTGATTGGATTCTTGTTTTCTAGC 60.405 42.308 0.00 0.00 38.35 3.42
375 482 4.221482 GCCCTGATTGGATTCTTGTTTTCT 59.779 41.667 0.00 0.00 38.35 2.52
383 490 2.061061 CCTAGGCCCTGATTGGATTCT 58.939 52.381 0.00 0.00 38.35 2.40
384 491 1.777272 ACCTAGGCCCTGATTGGATTC 59.223 52.381 9.30 0.00 38.35 2.52
386 493 1.912862 AACCTAGGCCCTGATTGGAT 58.087 50.000 9.30 0.00 38.35 3.41
387 494 1.564348 GAAACCTAGGCCCTGATTGGA 59.436 52.381 9.30 0.00 38.35 3.53
389 496 2.239654 TGAGAAACCTAGGCCCTGATTG 59.760 50.000 9.30 0.00 0.00 2.67
390 497 2.507471 CTGAGAAACCTAGGCCCTGATT 59.493 50.000 9.30 0.00 0.00 2.57
391 498 2.122768 CTGAGAAACCTAGGCCCTGAT 58.877 52.381 9.30 0.00 0.00 2.90
392 499 1.573108 CTGAGAAACCTAGGCCCTGA 58.427 55.000 9.30 0.00 0.00 3.86
393 500 0.543749 CCTGAGAAACCTAGGCCCTG 59.456 60.000 9.30 0.00 0.00 4.45
394 501 3.013682 CCTGAGAAACCTAGGCCCT 57.986 57.895 9.30 2.99 0.00 5.19
398 505 2.040412 ACCAAAGCCTGAGAAACCTAGG 59.960 50.000 7.41 7.41 34.67 3.02
399 506 3.077359 CACCAAAGCCTGAGAAACCTAG 58.923 50.000 0.00 0.00 0.00 3.02
400 507 2.708861 TCACCAAAGCCTGAGAAACCTA 59.291 45.455 0.00 0.00 0.00 3.08
401 508 1.494721 TCACCAAAGCCTGAGAAACCT 59.505 47.619 0.00 0.00 0.00 3.50
402 509 1.882623 CTCACCAAAGCCTGAGAAACC 59.117 52.381 0.00 0.00 36.75 3.27
403 510 2.851195 TCTCACCAAAGCCTGAGAAAC 58.149 47.619 0.00 0.00 39.97 2.78
404 511 3.576078 TTCTCACCAAAGCCTGAGAAA 57.424 42.857 7.48 0.00 46.03 2.52
406 513 3.795688 AATTCTCACCAAAGCCTGAGA 57.204 42.857 0.00 0.00 40.95 3.27
407 514 5.435291 AGATAATTCTCACCAAAGCCTGAG 58.565 41.667 0.00 0.00 36.07 3.35
408 515 5.441718 AGATAATTCTCACCAAAGCCTGA 57.558 39.130 0.00 0.00 0.00 3.86
409 516 5.762218 CCTAGATAATTCTCACCAAAGCCTG 59.238 44.000 0.00 0.00 33.17 4.85
410 517 5.430089 ACCTAGATAATTCTCACCAAAGCCT 59.570 40.000 0.00 0.00 33.17 4.58
411 518 5.685728 ACCTAGATAATTCTCACCAAAGCC 58.314 41.667 0.00 0.00 33.17 4.35
412 519 6.823689 TGAACCTAGATAATTCTCACCAAAGC 59.176 38.462 0.00 0.00 33.17 3.51
413 520 8.669243 GTTGAACCTAGATAATTCTCACCAAAG 58.331 37.037 0.00 0.00 33.17 2.77
414 521 7.610305 GGTTGAACCTAGATAATTCTCACCAAA 59.390 37.037 7.20 0.00 34.73 3.28
415 522 7.110155 GGTTGAACCTAGATAATTCTCACCAA 58.890 38.462 7.20 0.00 34.73 3.67
416 523 6.214615 TGGTTGAACCTAGATAATTCTCACCA 59.785 38.462 16.33 4.45 39.58 4.17
417 524 6.539103 GTGGTTGAACCTAGATAATTCTCACC 59.461 42.308 16.33 2.18 39.58 4.02
418 525 7.331791 AGTGGTTGAACCTAGATAATTCTCAC 58.668 38.462 16.33 0.28 39.58 3.51
419 526 7.364762 GGAGTGGTTGAACCTAGATAATTCTCA 60.365 40.741 16.33 0.00 39.58 3.27
420 527 6.987404 GGAGTGGTTGAACCTAGATAATTCTC 59.013 42.308 16.33 8.57 39.58 2.87
421 528 6.443849 TGGAGTGGTTGAACCTAGATAATTCT 59.556 38.462 16.33 0.62 39.58 2.40
422 529 6.650120 TGGAGTGGTTGAACCTAGATAATTC 58.350 40.000 16.33 0.21 39.58 2.17
423 530 6.636454 TGGAGTGGTTGAACCTAGATAATT 57.364 37.500 16.33 0.00 39.58 1.40
424 531 6.415573 GTTGGAGTGGTTGAACCTAGATAAT 58.584 40.000 16.33 0.00 39.58 1.28
425 532 5.568023 CGTTGGAGTGGTTGAACCTAGATAA 60.568 44.000 16.33 3.18 39.58 1.75
426 533 4.081862 CGTTGGAGTGGTTGAACCTAGATA 60.082 45.833 16.33 0.00 39.58 1.98
427 534 3.306780 CGTTGGAGTGGTTGAACCTAGAT 60.307 47.826 16.33 0.00 39.58 1.98
428 535 2.036733 CGTTGGAGTGGTTGAACCTAGA 59.963 50.000 16.33 0.00 39.58 2.43
429 536 2.224209 ACGTTGGAGTGGTTGAACCTAG 60.224 50.000 16.33 0.95 39.58 3.02
430 537 1.764134 ACGTTGGAGTGGTTGAACCTA 59.236 47.619 16.33 0.00 39.58 3.08
431 538 0.544697 ACGTTGGAGTGGTTGAACCT 59.455 50.000 16.33 0.00 39.58 3.50
432 539 0.942252 GACGTTGGAGTGGTTGAACC 59.058 55.000 7.57 7.57 39.22 3.62
433 540 1.597663 CTGACGTTGGAGTGGTTGAAC 59.402 52.381 0.00 0.00 0.00 3.18
434 541 1.948104 CTGACGTTGGAGTGGTTGAA 58.052 50.000 0.00 0.00 0.00 2.69
435 542 0.531974 GCTGACGTTGGAGTGGTTGA 60.532 55.000 0.00 0.00 0.00 3.18
436 543 1.507141 GGCTGACGTTGGAGTGGTTG 61.507 60.000 0.00 0.00 0.00 3.77
437 544 1.227853 GGCTGACGTTGGAGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
438 545 2.140792 AGGCTGACGTTGGAGTGGT 61.141 57.895 0.00 0.00 0.00 4.16
439 546 1.669115 CAGGCTGACGTTGGAGTGG 60.669 63.158 9.42 0.00 0.00 4.00
440 547 2.320587 GCAGGCTGACGTTGGAGTG 61.321 63.158 20.86 0.00 0.00 3.51
441 548 2.031163 GCAGGCTGACGTTGGAGT 59.969 61.111 20.86 0.00 0.00 3.85
442 549 2.743928 GGCAGGCTGACGTTGGAG 60.744 66.667 20.86 0.00 0.00 3.86
443 550 2.616797 TTTGGCAGGCTGACGTTGGA 62.617 55.000 20.86 0.00 0.00 3.53
444 551 2.192861 TTTGGCAGGCTGACGTTGG 61.193 57.895 20.86 0.00 0.00 3.77
445 552 1.008538 GTTTGGCAGGCTGACGTTG 60.009 57.895 20.86 0.00 0.00 4.10
446 553 1.034838 TTGTTTGGCAGGCTGACGTT 61.035 50.000 20.86 0.00 0.00 3.99
447 554 1.453015 TTGTTTGGCAGGCTGACGT 60.453 52.632 20.86 0.00 0.00 4.34
448 555 1.008538 GTTGTTTGGCAGGCTGACG 60.009 57.895 20.86 0.00 0.00 4.35
449 556 1.109323 AGGTTGTTTGGCAGGCTGAC 61.109 55.000 20.86 18.07 0.00 3.51
450 557 0.476338 TAGGTTGTTTGGCAGGCTGA 59.524 50.000 20.86 0.00 0.00 4.26
451 558 1.549203 ATAGGTTGTTTGGCAGGCTG 58.451 50.000 10.94 10.94 0.00 4.85
452 559 2.309136 AATAGGTTGTTTGGCAGGCT 57.691 45.000 0.00 0.00 0.00 4.58
453 560 3.761752 TCTAAATAGGTTGTTTGGCAGGC 59.238 43.478 0.00 0.00 0.00 4.85
454 561 5.010282 AGTCTAAATAGGTTGTTTGGCAGG 58.990 41.667 0.00 0.00 0.00 4.85
455 562 6.575162 AAGTCTAAATAGGTTGTTTGGCAG 57.425 37.500 0.00 0.00 0.00 4.85
456 563 6.775629 AGAAAGTCTAAATAGGTTGTTTGGCA 59.224 34.615 0.00 0.00 0.00 4.92
457 564 7.215719 AGAAAGTCTAAATAGGTTGTTTGGC 57.784 36.000 0.00 0.00 0.00 4.52
458 565 7.360946 CCGAGAAAGTCTAAATAGGTTGTTTGG 60.361 40.741 0.00 0.00 0.00 3.28
459 566 7.386848 TCCGAGAAAGTCTAAATAGGTTGTTTG 59.613 37.037 0.00 0.00 0.00 2.93
460 567 7.447594 TCCGAGAAAGTCTAAATAGGTTGTTT 58.552 34.615 0.00 0.00 0.00 2.83
461 568 7.001099 TCCGAGAAAGTCTAAATAGGTTGTT 57.999 36.000 0.00 0.00 0.00 2.83
462 569 6.600882 TCCGAGAAAGTCTAAATAGGTTGT 57.399 37.500 0.00 0.00 0.00 3.32
463 570 8.494016 AAATCCGAGAAAGTCTAAATAGGTTG 57.506 34.615 0.00 0.00 0.00 3.77
464 571 9.163899 GAAAATCCGAGAAAGTCTAAATAGGTT 57.836 33.333 0.00 0.00 0.00 3.50
465 572 8.319146 TGAAAATCCGAGAAAGTCTAAATAGGT 58.681 33.333 0.00 0.00 0.00 3.08
466 573 8.718102 TGAAAATCCGAGAAAGTCTAAATAGG 57.282 34.615 0.00 0.00 0.00 2.57
467 574 9.587772 TCTGAAAATCCGAGAAAGTCTAAATAG 57.412 33.333 0.00 0.00 0.00 1.73
468 575 9.938280 TTCTGAAAATCCGAGAAAGTCTAAATA 57.062 29.630 0.00 0.00 0.00 1.40
469 576 8.848474 TTCTGAAAATCCGAGAAAGTCTAAAT 57.152 30.769 0.00 0.00 0.00 1.40
470 577 8.848474 ATTCTGAAAATCCGAGAAAGTCTAAA 57.152 30.769 0.00 0.00 29.78 1.85
471 578 8.848474 AATTCTGAAAATCCGAGAAAGTCTAA 57.152 30.769 0.00 0.00 29.78 2.10
472 579 9.587772 CTAATTCTGAAAATCCGAGAAAGTCTA 57.412 33.333 0.00 0.00 29.78 2.59
473 580 7.550906 CCTAATTCTGAAAATCCGAGAAAGTCT 59.449 37.037 0.00 0.00 29.78 3.24
474 581 7.334671 ACCTAATTCTGAAAATCCGAGAAAGTC 59.665 37.037 0.00 0.00 29.78 3.01
475 582 7.119846 CACCTAATTCTGAAAATCCGAGAAAGT 59.880 37.037 0.00 0.00 29.78 2.66
476 583 7.334421 TCACCTAATTCTGAAAATCCGAGAAAG 59.666 37.037 0.00 0.00 29.78 2.62
477 584 7.165485 TCACCTAATTCTGAAAATCCGAGAAA 58.835 34.615 0.00 0.00 29.78 2.52
478 585 6.707290 TCACCTAATTCTGAAAATCCGAGAA 58.293 36.000 0.00 0.00 0.00 2.87
479 586 6.294361 TCACCTAATTCTGAAAATCCGAGA 57.706 37.500 0.00 0.00 0.00 4.04
480 587 8.839310 ATATCACCTAATTCTGAAAATCCGAG 57.161 34.615 0.00 0.00 0.00 4.63
489 596 9.337714 TGGATGGATAATATCACCTAATTCTGA 57.662 33.333 2.41 0.00 0.00 3.27
492 599 9.265901 CGATGGATGGATAATATCACCTAATTC 57.734 37.037 2.41 0.53 0.00 2.17
493 600 8.772250 ACGATGGATGGATAATATCACCTAATT 58.228 33.333 2.41 0.00 0.00 1.40
494 601 8.324191 ACGATGGATGGATAATATCACCTAAT 57.676 34.615 2.41 0.00 0.00 1.73
495 602 7.733773 ACGATGGATGGATAATATCACCTAA 57.266 36.000 2.41 0.00 0.00 2.69
496 603 8.832458 TTACGATGGATGGATAATATCACCTA 57.168 34.615 2.41 0.00 0.00 3.08
497 604 7.733773 TTACGATGGATGGATAATATCACCT 57.266 36.000 2.41 0.00 0.00 4.00
498 605 8.964476 AATTACGATGGATGGATAATATCACC 57.036 34.615 2.41 3.56 0.00 4.02
499 606 9.046296 GGAATTACGATGGATGGATAATATCAC 57.954 37.037 2.41 0.00 0.00 3.06
500 607 8.992349 AGGAATTACGATGGATGGATAATATCA 58.008 33.333 2.41 0.00 0.00 2.15
501 608 9.265901 CAGGAATTACGATGGATGGATAATATC 57.734 37.037 0.00 0.00 0.00 1.63
502 609 7.716998 GCAGGAATTACGATGGATGGATAATAT 59.283 37.037 0.00 0.00 0.00 1.28
503 610 7.047891 GCAGGAATTACGATGGATGGATAATA 58.952 38.462 0.00 0.00 0.00 0.98
504 611 5.882557 GCAGGAATTACGATGGATGGATAAT 59.117 40.000 0.00 0.00 0.00 1.28
505 612 5.245531 GCAGGAATTACGATGGATGGATAA 58.754 41.667 0.00 0.00 0.00 1.75
506 613 4.323485 GGCAGGAATTACGATGGATGGATA 60.323 45.833 0.00 0.00 0.00 2.59
507 614 3.560025 GGCAGGAATTACGATGGATGGAT 60.560 47.826 0.00 0.00 0.00 3.41
508 615 2.224523 GGCAGGAATTACGATGGATGGA 60.225 50.000 0.00 0.00 0.00 3.41
509 616 2.154462 GGCAGGAATTACGATGGATGG 58.846 52.381 0.00 0.00 0.00 3.51
510 617 2.849942 TGGCAGGAATTACGATGGATG 58.150 47.619 0.00 0.00 0.00 3.51
511 618 3.576078 TTGGCAGGAATTACGATGGAT 57.424 42.857 0.00 0.00 0.00 3.41
512 619 3.576078 ATTGGCAGGAATTACGATGGA 57.424 42.857 0.00 0.00 0.00 3.41
513 620 5.248640 AGATATTGGCAGGAATTACGATGG 58.751 41.667 0.00 0.00 0.00 3.51
514 621 6.169094 AGAGATATTGGCAGGAATTACGATG 58.831 40.000 0.00 0.00 0.00 3.84
515 622 6.212388 AGAGAGATATTGGCAGGAATTACGAT 59.788 38.462 0.00 0.00 0.00 3.73
516 623 5.540337 AGAGAGATATTGGCAGGAATTACGA 59.460 40.000 0.00 0.00 0.00 3.43
517 624 5.788450 AGAGAGATATTGGCAGGAATTACG 58.212 41.667 0.00 0.00 0.00 3.18
518 625 7.100409 GGTAGAGAGATATTGGCAGGAATTAC 58.900 42.308 0.00 0.00 0.00 1.89
519 626 6.071334 CGGTAGAGAGATATTGGCAGGAATTA 60.071 42.308 0.00 0.00 0.00 1.40
520 627 5.279708 CGGTAGAGAGATATTGGCAGGAATT 60.280 44.000 0.00 0.00 0.00 2.17
521 628 4.221703 CGGTAGAGAGATATTGGCAGGAAT 59.778 45.833 0.00 0.00 0.00 3.01
522 629 3.574396 CGGTAGAGAGATATTGGCAGGAA 59.426 47.826 0.00 0.00 0.00 3.36
523 630 3.157881 CGGTAGAGAGATATTGGCAGGA 58.842 50.000 0.00 0.00 0.00 3.86
524 631 3.157881 TCGGTAGAGAGATATTGGCAGG 58.842 50.000 0.00 0.00 0.00 4.85
525 632 4.855715 TTCGGTAGAGAGATATTGGCAG 57.144 45.455 0.00 0.00 0.00 4.85
526 633 4.893524 TCTTTCGGTAGAGAGATATTGGCA 59.106 41.667 0.00 0.00 33.32 4.92
527 634 5.455056 TCTTTCGGTAGAGAGATATTGGC 57.545 43.478 0.00 0.00 33.32 4.52
528 635 6.350612 GGGATCTTTCGGTAGAGAGATATTGG 60.351 46.154 2.20 0.00 45.09 3.16
529 636 6.623986 CGGGATCTTTCGGTAGAGAGATATTG 60.624 46.154 2.20 0.00 45.09 1.90
530 637 5.416326 CGGGATCTTTCGGTAGAGAGATATT 59.584 44.000 2.20 0.00 45.09 1.28
531 638 4.944930 CGGGATCTTTCGGTAGAGAGATAT 59.055 45.833 2.20 0.00 45.09 1.63
532 639 4.041321 TCGGGATCTTTCGGTAGAGAGATA 59.959 45.833 2.20 0.00 45.09 1.98
533 640 3.150767 CGGGATCTTTCGGTAGAGAGAT 58.849 50.000 1.85 1.85 46.94 2.75
534 641 2.172082 TCGGGATCTTTCGGTAGAGAGA 59.828 50.000 0.00 0.00 41.12 3.10
535 642 2.291190 GTCGGGATCTTTCGGTAGAGAG 59.709 54.545 0.00 0.00 0.00 3.20
536 643 2.295885 GTCGGGATCTTTCGGTAGAGA 58.704 52.381 0.00 0.00 0.00 3.10
537 644 2.022195 TGTCGGGATCTTTCGGTAGAG 58.978 52.381 0.00 0.00 0.00 2.43
538 645 2.133281 TGTCGGGATCTTTCGGTAGA 57.867 50.000 0.00 0.00 0.00 2.59
539 646 2.928116 GTTTGTCGGGATCTTTCGGTAG 59.072 50.000 0.00 0.00 0.00 3.18
540 647 2.564062 AGTTTGTCGGGATCTTTCGGTA 59.436 45.455 0.00 0.00 0.00 4.02
541 648 1.346722 AGTTTGTCGGGATCTTTCGGT 59.653 47.619 0.00 0.00 0.00 4.69
542 649 1.732259 CAGTTTGTCGGGATCTTTCGG 59.268 52.381 0.00 0.00 0.00 4.30
543 650 2.157668 CACAGTTTGTCGGGATCTTTCG 59.842 50.000 0.00 0.00 0.00 3.46
544 651 3.186613 GTCACAGTTTGTCGGGATCTTTC 59.813 47.826 0.00 0.00 0.00 2.62
545 652 3.139077 GTCACAGTTTGTCGGGATCTTT 58.861 45.455 0.00 0.00 0.00 2.52
546 653 2.104111 TGTCACAGTTTGTCGGGATCTT 59.896 45.455 0.00 0.00 0.00 2.40
547 654 1.691976 TGTCACAGTTTGTCGGGATCT 59.308 47.619 0.00 0.00 0.00 2.75
548 655 2.069273 CTGTCACAGTTTGTCGGGATC 58.931 52.381 0.00 0.00 0.00 3.36
549 656 1.416401 ACTGTCACAGTTTGTCGGGAT 59.584 47.619 3.98 0.00 42.59 3.85
550 657 0.828022 ACTGTCACAGTTTGTCGGGA 59.172 50.000 3.98 0.00 42.59 5.14
551 658 1.217882 GACTGTCACAGTTTGTCGGG 58.782 55.000 12.92 0.00 45.44 5.14
552 659 1.934589 TGACTGTCACAGTTTGTCGG 58.065 50.000 12.92 0.00 45.44 4.79
553 660 2.930040 AGTTGACTGTCACAGTTTGTCG 59.070 45.455 12.92 0.00 45.44 4.35
554 661 4.026804 CGTAGTTGACTGTCACAGTTTGTC 60.027 45.833 12.92 0.00 45.44 3.18
555 662 3.863424 CGTAGTTGACTGTCACAGTTTGT 59.137 43.478 12.92 0.10 45.44 2.83
556 663 4.109766 TCGTAGTTGACTGTCACAGTTTG 58.890 43.478 12.92 0.00 45.44 2.93
557 664 4.097437 TCTCGTAGTTGACTGTCACAGTTT 59.903 41.667 12.92 1.32 45.44 2.66
558 665 3.630769 TCTCGTAGTTGACTGTCACAGTT 59.369 43.478 12.92 0.00 45.44 3.16
560 667 3.898517 TCTCGTAGTTGACTGTCACAG 57.101 47.619 10.56 2.22 37.52 3.66
561 668 3.611766 GCATCTCGTAGTTGACTGTCACA 60.612 47.826 10.56 0.00 0.00 3.58
562 669 2.917971 GCATCTCGTAGTTGACTGTCAC 59.082 50.000 10.56 6.16 0.00 3.67
563 670 2.094700 GGCATCTCGTAGTTGACTGTCA 60.095 50.000 6.36 6.36 0.00 3.58
564 671 2.164624 AGGCATCTCGTAGTTGACTGTC 59.835 50.000 0.00 0.00 32.28 3.51
565 672 2.171840 AGGCATCTCGTAGTTGACTGT 58.828 47.619 0.00 0.00 32.28 3.55
566 673 2.949451 AGGCATCTCGTAGTTGACTG 57.051 50.000 0.00 0.00 32.28 3.51
567 674 2.355132 CGTAGGCATCTCGTAGTTGACT 59.645 50.000 6.56 6.56 37.13 3.41
568 675 2.541178 CCGTAGGCATCTCGTAGTTGAC 60.541 54.545 0.00 0.00 46.14 3.18
569 676 1.674441 CCGTAGGCATCTCGTAGTTGA 59.326 52.381 0.00 0.00 46.14 3.18
570 677 2.121116 CCGTAGGCATCTCGTAGTTG 57.879 55.000 0.00 0.00 46.14 3.16
587 694 9.171701 TCATTTTGAAATTTTACGAAGTTACCG 57.828 29.630 0.00 0.00 37.78 4.02
618 725 2.493675 CACCTCCGAGAGATTGAGTTGA 59.506 50.000 0.00 0.00 0.00 3.18
621 728 0.820871 GCACCTCCGAGAGATTGAGT 59.179 55.000 0.00 0.00 0.00 3.41
622 729 1.066908 GAGCACCTCCGAGAGATTGAG 59.933 57.143 0.00 0.00 0.00 3.02
626 733 2.513753 CTATGAGCACCTCCGAGAGAT 58.486 52.381 0.00 0.00 0.00 2.75
630 737 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
640 747 0.759436 ACACGCCCTACCCCTATGAG 60.759 60.000 0.00 0.00 0.00 2.90
655 762 1.225368 GTATGAACGCGCACACACG 60.225 57.895 5.73 0.00 0.00 4.49
666 773 4.421058 TGCATACACTCACTCGTATGAAC 58.579 43.478 12.46 0.00 45.09 3.18
667 774 4.712122 TGCATACACTCACTCGTATGAA 57.288 40.909 12.46 0.46 45.09 2.57
668 775 4.097892 ACATGCATACACTCACTCGTATGA 59.902 41.667 12.46 0.68 45.09 2.15
669 776 4.363138 ACATGCATACACTCACTCGTATG 58.637 43.478 0.00 0.00 45.07 2.39
670 777 4.655762 ACATGCATACACTCACTCGTAT 57.344 40.909 0.00 0.00 0.00 3.06
671 778 5.767816 ATACATGCATACACTCACTCGTA 57.232 39.130 0.00 0.00 0.00 3.43
672 779 4.655762 ATACATGCATACACTCACTCGT 57.344 40.909 0.00 0.00 0.00 4.18
673 780 6.466097 CGTATATACATGCATACACTCACTCG 59.534 42.308 13.22 0.00 0.00 4.18
674 781 7.527457 TCGTATATACATGCATACACTCACTC 58.473 38.462 13.22 0.00 0.00 3.51
675 782 7.448748 TCGTATATACATGCATACACTCACT 57.551 36.000 13.22 0.00 0.00 3.41
676 783 6.251589 GCTCGTATATACATGCATACACTCAC 59.748 42.308 13.22 0.00 0.00 3.51
677 784 6.072175 TGCTCGTATATACATGCATACACTCA 60.072 38.462 19.51 2.30 32.10 3.41
678 785 6.322491 TGCTCGTATATACATGCATACACTC 58.678 40.000 19.51 0.00 32.10 3.51
679 786 6.267496 TGCTCGTATATACATGCATACACT 57.733 37.500 19.51 0.00 32.10 3.55
680 787 6.944557 TTGCTCGTATATACATGCATACAC 57.055 37.500 22.25 0.20 35.26 2.90
681 788 7.412891 GCAATTGCTCGTATATACATGCATACA 60.413 37.037 23.21 13.10 35.26 2.29
682 789 6.901887 GCAATTGCTCGTATATACATGCATAC 59.098 38.462 23.21 12.86 35.26 2.39
683 790 6.237808 CGCAATTGCTCGTATATACATGCATA 60.238 38.462 26.86 16.02 39.32 3.14
684 791 5.446340 CGCAATTGCTCGTATATACATGCAT 60.446 40.000 26.86 11.56 39.32 3.96
685 792 4.143137 CGCAATTGCTCGTATATACATGCA 60.143 41.667 26.86 19.51 39.32 3.96
686 793 4.143115 ACGCAATTGCTCGTATATACATGC 60.143 41.667 26.86 14.76 37.14 4.06
687 794 5.346011 AGACGCAATTGCTCGTATATACATG 59.654 40.000 26.86 9.83 39.22 3.21
688 795 5.346011 CAGACGCAATTGCTCGTATATACAT 59.654 40.000 26.86 3.48 39.22 2.29
689 796 4.679654 CAGACGCAATTGCTCGTATATACA 59.320 41.667 26.86 0.11 39.22 2.29
690 797 4.680110 ACAGACGCAATTGCTCGTATATAC 59.320 41.667 26.86 2.53 39.22 1.47
691 798 4.679654 CACAGACGCAATTGCTCGTATATA 59.320 41.667 26.86 0.00 39.22 0.86
692 799 3.490896 CACAGACGCAATTGCTCGTATAT 59.509 43.478 26.86 3.49 39.22 0.86
693 800 2.857748 CACAGACGCAATTGCTCGTATA 59.142 45.455 26.86 0.00 39.22 1.47
694 801 1.660607 CACAGACGCAATTGCTCGTAT 59.339 47.619 26.86 13.58 39.22 3.06
695 802 1.067693 CACAGACGCAATTGCTCGTA 58.932 50.000 26.86 0.00 39.22 3.43
696 803 1.862123 CACAGACGCAATTGCTCGT 59.138 52.632 26.86 18.55 42.09 4.18
697 804 1.510623 GCACAGACGCAATTGCTCG 60.511 57.895 26.86 15.44 39.32 5.03
698 805 1.078709 TAGCACAGACGCAATTGCTC 58.921 50.000 26.86 21.34 44.19 4.26
699 806 1.399440 CATAGCACAGACGCAATTGCT 59.601 47.619 26.86 14.61 46.85 3.91
700 807 1.131126 ACATAGCACAGACGCAATTGC 59.869 47.619 20.76 20.76 35.08 3.56
701 808 3.120234 TGAACATAGCACAGACGCAATTG 60.120 43.478 0.00 0.00 0.00 2.32
702 809 3.073678 TGAACATAGCACAGACGCAATT 58.926 40.909 0.00 0.00 0.00 2.32
703 810 2.674852 CTGAACATAGCACAGACGCAAT 59.325 45.455 0.00 0.00 34.07 3.56
704 811 2.068519 CTGAACATAGCACAGACGCAA 58.931 47.619 0.00 0.00 34.07 4.85
705 812 1.272212 TCTGAACATAGCACAGACGCA 59.728 47.619 0.00 0.00 36.04 5.24
706 813 1.996292 TCTGAACATAGCACAGACGC 58.004 50.000 0.00 0.00 36.04 5.19
707 814 6.647212 TTATTTCTGAACATAGCACAGACG 57.353 37.500 0.00 0.00 39.80 4.18
1225 1367 2.203422 CAGAACCACCGCCCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
1344 1513 2.488153 GCATTCCAACTAAGTGGGTCAC 59.512 50.000 0.00 0.00 39.34 3.67
1366 1535 3.316283 TGAATCAAGCAAACGAAATGCC 58.684 40.909 7.91 0.00 44.91 4.40
1427 1596 3.823716 CTGAAAACGCAGCAGAAAAAC 57.176 42.857 0.00 0.00 0.00 2.43
1560 1735 0.383737 TTCGCACGCAATTGTCGAAC 60.384 50.000 22.87 14.86 33.28 3.95
1573 1753 1.225395 GAAGCTTACGCGTTCGCAC 60.225 57.895 26.74 18.58 42.32 5.34
1577 1757 2.666508 TGATCAAGAAGCTTACGCGTTC 59.333 45.455 20.78 8.73 42.32 3.95
1601 1781 2.058798 CTACACACACGCTGGTTAGTG 58.941 52.381 0.00 0.00 43.46 2.74
1606 1786 0.531974 CAACCTACACACACGCTGGT 60.532 55.000 0.00 0.00 0.00 4.00
1607 1787 1.841663 GCAACCTACACACACGCTGG 61.842 60.000 0.00 0.00 0.00 4.85
1608 1788 0.880278 AGCAACCTACACACACGCTG 60.880 55.000 0.00 0.00 0.00 5.18
1610 1790 1.569493 CAGCAACCTACACACACGC 59.431 57.895 0.00 0.00 0.00 5.34
1689 1876 1.523154 AATGCACGGTCGCCAAATGT 61.523 50.000 0.00 0.00 0.00 2.71
1690 1877 0.798009 GAATGCACGGTCGCCAAATG 60.798 55.000 0.00 0.00 0.00 2.32
1692 1879 1.851021 CTGAATGCACGGTCGCCAAA 61.851 55.000 0.00 0.00 0.00 3.28
1693 1880 2.281139 TGAATGCACGGTCGCCAA 60.281 55.556 0.00 0.00 0.00 4.52
1694 1881 2.741985 CTGAATGCACGGTCGCCA 60.742 61.111 0.00 0.00 0.00 5.69
1695 1882 4.166011 GCTGAATGCACGGTCGCC 62.166 66.667 0.00 0.00 42.31 5.54
1696 1883 4.505217 CGCTGAATGCACGGTCGC 62.505 66.667 0.00 0.00 43.06 5.19
1697 1884 3.112075 ACGCTGAATGCACGGTCG 61.112 61.111 0.00 0.00 43.06 4.79
1749 1953 2.621055 GCACAACAACACCAGGACATTA 59.379 45.455 0.00 0.00 0.00 1.90
1750 1954 1.408702 GCACAACAACACCAGGACATT 59.591 47.619 0.00 0.00 0.00 2.71
1828 2032 3.742327 GCAATGTATCAGAGCCTGCAGTA 60.742 47.826 13.81 0.00 0.00 2.74
1886 2090 0.748450 CTTTCATCGGGGCATGCAAT 59.252 50.000 21.36 4.14 0.00 3.56
1898 2119 9.704098 GGTTAATTTTAGTCGTCATCTTTCATC 57.296 33.333 0.00 0.00 0.00 2.92
1899 2120 8.674607 GGGTTAATTTTAGTCGTCATCTTTCAT 58.325 33.333 0.00 0.00 0.00 2.57
1902 2123 7.989416 TGGGTTAATTTTAGTCGTCATCTTT 57.011 32.000 0.00 0.00 0.00 2.52
1906 2127 7.012044 GCTGTATGGGTTAATTTTAGTCGTCAT 59.988 37.037 0.00 0.00 0.00 3.06
1973 2194 1.004277 GAAGACGACGGTGAGCACTG 61.004 60.000 7.86 7.86 43.20 3.66
1974 2195 1.286260 GAAGACGACGGTGAGCACT 59.714 57.895 0.00 0.00 0.00 4.40
1976 2197 0.317160 ATTGAAGACGACGGTGAGCA 59.683 50.000 0.00 0.00 0.00 4.26
1977 2198 0.716108 CATTGAAGACGACGGTGAGC 59.284 55.000 0.00 0.00 0.00 4.26
1981 2254 5.287226 GTTATATCCATTGAAGACGACGGT 58.713 41.667 0.00 0.00 0.00 4.83
1984 2257 4.995487 GGGGTTATATCCATTGAAGACGAC 59.005 45.833 2.29 0.00 0.00 4.34
1987 2260 5.941788 ACAGGGGTTATATCCATTGAAGAC 58.058 41.667 2.29 0.00 0.00 3.01
1995 2268 5.922960 ATTAGCAACAGGGGTTATATCCA 57.077 39.130 2.29 0.00 34.87 3.41
2019 2292 8.971321 GCATGAAATTCATTTAATCGTGCTATT 58.029 29.630 5.63 0.00 34.28 1.73
2020 2293 8.355169 AGCATGAAATTCATTTAATCGTGCTAT 58.645 29.630 16.60 0.00 40.00 2.97
2021 2294 7.706159 AGCATGAAATTCATTTAATCGTGCTA 58.294 30.769 16.60 0.00 40.00 3.49
2022 2295 6.567050 AGCATGAAATTCATTTAATCGTGCT 58.433 32.000 13.38 13.38 38.47 4.40
2023 2296 6.473131 TGAGCATGAAATTCATTTAATCGTGC 59.527 34.615 5.63 5.83 34.28 5.34
2024 2297 7.974243 TGAGCATGAAATTCATTTAATCGTG 57.026 32.000 5.63 0.00 34.28 4.35
2025 2298 9.241317 GAATGAGCATGAAATTCATTTAATCGT 57.759 29.630 5.63 1.40 34.28 3.73
2026 2299 9.459640 AGAATGAGCATGAAATTCATTTAATCG 57.540 29.630 5.63 0.00 34.28 3.34
2050 2323 7.898014 TTAGTCTACATTGCAGAGGATAAGA 57.102 36.000 0.00 0.00 0.00 2.10
2057 2330 7.278646 TGCTTGTTATTAGTCTACATTGCAGAG 59.721 37.037 0.00 0.00 32.22 3.35
2087 2360 4.965814 TCCTAGGATAAGCAATGAAGCAG 58.034 43.478 7.62 0.00 36.85 4.24
2091 2364 7.000472 CCAGATTTCCTAGGATAAGCAATGAA 59.000 38.462 13.57 0.25 0.00 2.57
2094 2367 6.770286 TCCAGATTTCCTAGGATAAGCAAT 57.230 37.500 13.57 8.88 0.00 3.56
2128 2413 7.615403 TCTGATACTTTGAAGCTATGAACTGT 58.385 34.615 0.00 0.00 0.00 3.55
2192 2477 5.536497 AGTCCCTTTATCACCTGGAAATT 57.464 39.130 0.00 0.00 0.00 1.82
2194 2479 4.352595 TCAAGTCCCTTTATCACCTGGAAA 59.647 41.667 0.00 0.00 0.00 3.13
2196 2481 3.526899 TCAAGTCCCTTTATCACCTGGA 58.473 45.455 0.00 0.00 0.00 3.86
2197 2482 4.080356 TCATCAAGTCCCTTTATCACCTGG 60.080 45.833 0.00 0.00 0.00 4.45
2249 2534 1.274596 GGTATGTACAACCGACGCAG 58.725 55.000 0.00 0.00 0.00 5.18
2251 2536 2.669419 GGGTATGTACAACCGACGC 58.331 57.895 16.18 10.00 37.93 5.19
2281 2566 0.039074 AACTCGACGAGGCAAGACTG 60.039 55.000 27.39 1.64 33.35 3.51
2292 2577 3.357823 GCATTGCTTTGTTAAACTCGACG 59.642 43.478 0.16 0.00 0.00 5.12
2322 2607 7.412891 GCACATCAGCTAGTTTTGTTTTGTTTT 60.413 33.333 0.00 0.00 0.00 2.43
2359 2644 5.195940 TCATGATCATTGGAGGAAAAGGTC 58.804 41.667 5.16 0.00 0.00 3.85
2375 2660 1.871676 ACACAGCGCATGATCATGATC 59.128 47.619 34.65 25.91 41.20 2.92
2376 2661 1.963172 ACACAGCGCATGATCATGAT 58.037 45.000 34.65 18.70 41.20 2.45
2377 2662 1.741528 AACACAGCGCATGATCATGA 58.258 45.000 34.65 0.00 41.20 3.07
2378 2663 2.096980 AGAAACACAGCGCATGATCATG 59.903 45.455 28.04 28.04 41.60 3.07
2449 2734 1.912043 AGGGAATGCTAACTGCTCAGT 59.088 47.619 0.00 0.00 44.94 3.41
2481 2766 4.344865 GGCCTTCCGGGTGCTGAA 62.345 66.667 0.00 0.00 37.43 3.02
2487 2772 2.529389 ACTCTTGGCCTTCCGGGT 60.529 61.111 3.32 0.00 37.43 5.28
2547 2832 0.594602 CGTCGTCAAGACCAGGTACA 59.405 55.000 0.00 0.00 46.92 2.90
2584 2869 2.660572 TGCCTCCTGTAAAGTTGCAAA 58.339 42.857 0.00 0.00 0.00 3.68
2816 3102 5.560953 GCGAGCAAATCTGACACTTAACTTT 60.561 40.000 0.00 0.00 0.00 2.66
2817 3103 4.083802 GCGAGCAAATCTGACACTTAACTT 60.084 41.667 0.00 0.00 0.00 2.66
2987 3276 2.234661 TGCACAAACCACATGTTTTGGA 59.765 40.909 21.30 7.41 44.80 3.53
3022 3311 6.579666 AGACTCACCAATACAGTACGTTAA 57.420 37.500 0.00 0.00 0.00 2.01
3032 3324 7.973944 AGTGTTTTTCAAAAGACTCACCAATAC 59.026 33.333 8.60 0.00 45.82 1.89
3060 3352 7.230510 AGGCAATCTGTCAAGTGTAATTTACAA 59.769 33.333 10.73 0.00 40.93 2.41
3062 3354 7.145932 AGGCAATCTGTCAAGTGTAATTTAC 57.854 36.000 0.00 0.00 0.00 2.01
3084 3376 7.646922 GCAGCATATTCATAGAAGAAACAAAGG 59.353 37.037 0.00 0.00 0.00 3.11
3155 3447 2.957491 TTTGGTGACTGGCAAGTTTG 57.043 45.000 0.00 0.00 36.52 2.93
3251 3543 3.873361 TGCTGCTCCATTTCTTAATCTCG 59.127 43.478 0.00 0.00 0.00 4.04
3349 3641 4.685628 CGGATGTTTGTTGAAGGAAAATGG 59.314 41.667 0.00 0.00 0.00 3.16
3365 3657 0.249398 GGTCTACAGGTGCGGATGTT 59.751 55.000 0.00 0.00 0.00 2.71
3396 3688 2.537625 CTCACGCAGATTCTTCGGATTC 59.462 50.000 10.37 0.00 0.00 2.52
3413 3706 6.385649 TGAAGGAAAATGTTACCAACTCAC 57.614 37.500 0.00 0.00 0.00 3.51
3446 3739 1.837439 CTTATGGGGTCTACAGGTGCA 59.163 52.381 0.00 0.00 0.00 4.57
3470 3763 7.438564 AGTCTTCCTTCTCAAGAAAGAGTTAC 58.561 38.462 0.00 0.00 36.97 2.50
3471 3764 7.522399 CGAGTCTTCCTTCTCAAGAAAGAGTTA 60.522 40.741 0.00 0.00 36.97 2.24
3476 3769 4.920927 GTCGAGTCTTCCTTCTCAAGAAAG 59.079 45.833 0.00 0.00 31.60 2.62
3483 3776 3.253677 TCAGTTGTCGAGTCTTCCTTCTC 59.746 47.826 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.