Multiple sequence alignment - TraesCS7D01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G268000 chr7D 100.000 6241 0 0 1 6241 252025868 252032108 0.000000e+00 11526
1 TraesCS7D01G268000 chr7D 90.402 2761 187 34 2616 5351 251507418 251510125 0.000000e+00 3559
2 TraesCS7D01G268000 chr7D 94.324 599 28 5 1682 2275 251506821 251507418 0.000000e+00 913
3 TraesCS7D01G268000 chr7D 86.726 791 42 21 861 1643 251506082 251506817 0.000000e+00 821
4 TraesCS7D01G268000 chr7D 83.398 518 51 12 5344 5835 251516227 251516735 1.230000e-121 448
5 TraesCS7D01G268000 chr7D 92.254 142 10 1 5770 5911 251516735 251516875 3.820000e-47 200
6 TraesCS7D01G268000 chr7B 96.787 5384 110 20 602 5957 228781831 228787179 0.000000e+00 8925
7 TraesCS7D01G268000 chr7B 88.643 2800 225 31 3093 5835 228391262 228394025 0.000000e+00 3323
8 TraesCS7D01G268000 chr7B 86.506 830 57 19 1026 1839 228388383 228389173 0.000000e+00 861
9 TraesCS7D01G268000 chr7B 91.736 605 48 2 1 605 138663089 138662487 0.000000e+00 839
10 TraesCS7D01G268000 chr7B 94.469 452 20 4 1830 2280 228390236 228390683 0.000000e+00 691
11 TraesCS7D01G268000 chr7B 93.907 279 14 3 5963 6241 228787351 228787626 9.680000e-113 418
12 TraesCS7D01G268000 chr7B 92.529 174 13 0 2616 2789 228390679 228390852 3.740000e-62 250
13 TraesCS7D01G268000 chr7B 92.254 142 10 1 5770 5911 228394025 228394165 3.820000e-47 200
14 TraesCS7D01G268000 chr7B 89.516 124 7 3 861 981 228388255 228388375 1.080000e-32 152
15 TraesCS7D01G268000 chr7A 93.871 2790 108 19 3483 6241 269280776 269278019 0.000000e+00 4146
16 TraesCS7D01G268000 chr7A 88.683 2315 169 36 3564 5835 269960323 269958059 0.000000e+00 2737
17 TraesCS7D01G268000 chr7A 94.448 1675 47 15 606 2273 269283598 269281963 0.000000e+00 2536
18 TraesCS7D01G268000 chr7A 95.583 883 35 3 2620 3502 269281959 269281081 0.000000e+00 1411
19 TraesCS7D01G268000 chr7A 89.521 773 66 13 2804 3567 269961191 269960425 0.000000e+00 965
20 TraesCS7D01G268000 chr7A 93.377 604 33 6 1682 2280 269964357 269963756 0.000000e+00 887
21 TraesCS7D01G268000 chr7A 85.861 778 60 17 874 1643 269965096 269964361 0.000000e+00 782
22 TraesCS7D01G268000 chr7A 91.795 195 16 0 2616 2810 269963760 269963566 7.970000e-69 272
23 TraesCS7D01G268000 chr7A 88.276 145 10 3 5770 5914 269958059 269957922 3.870000e-37 167
24 TraesCS7D01G268000 chr3B 91.694 602 50 0 1 602 544920943 544921544 0.000000e+00 835
25 TraesCS7D01G268000 chr3B 90.865 613 53 3 1 612 545007587 545008197 0.000000e+00 819
26 TraesCS7D01G268000 chr2D 92.295 584 45 0 1 584 147354595 147354012 0.000000e+00 830
27 TraesCS7D01G268000 chr2D 96.221 344 12 1 2275 2618 425098996 425098654 4.220000e-156 562
28 TraesCS7D01G268000 chr1B 91.030 602 54 0 1 602 269086059 269085458 0.000000e+00 813
29 TraesCS7D01G268000 chr1B 85.953 598 84 0 4 601 410663244 410663841 1.900000e-179 640
30 TraesCS7D01G268000 chr4D 91.788 548 45 0 61 608 276626224 276625677 0.000000e+00 763
31 TraesCS7D01G268000 chr6B 97.965 344 6 1 2274 2617 247730963 247730621 4.160000e-166 595
32 TraesCS7D01G268000 chr6D 95.930 344 13 1 2275 2618 293593322 293593664 1.970000e-154 556
33 TraesCS7D01G268000 chr6D 95.640 344 13 2 2274 2617 162071963 162071622 9.140000e-153 551
34 TraesCS7D01G268000 chr3D 95.930 344 13 1 2275 2618 443903669 443903327 1.970000e-154 556
35 TraesCS7D01G268000 chr3D 94.915 354 17 1 2275 2628 331731715 331731363 2.540000e-153 553
36 TraesCS7D01G268000 chr1D 95.906 342 13 1 2275 2616 287299853 287300193 2.540000e-153 553
37 TraesCS7D01G268000 chr5A 95.389 347 15 1 2274 2620 130561919 130562264 9.140000e-153 551
38 TraesCS7D01G268000 chr4B 83.415 609 73 9 4 609 507233591 507233008 1.980000e-149 540
39 TraesCS7D01G268000 chr6A 76.809 608 122 18 4 602 551366118 551365521 2.170000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G268000 chr7D 252025868 252032108 6240 False 11526.000000 11526 100.000000 1 6241 1 chr7D.!!$F1 6240
1 TraesCS7D01G268000 chr7D 251506082 251510125 4043 False 1764.333333 3559 90.484000 861 5351 3 chr7D.!!$F2 4490
2 TraesCS7D01G268000 chr7D 251516227 251516875 648 False 324.000000 448 87.826000 5344 5911 2 chr7D.!!$F3 567
3 TraesCS7D01G268000 chr7B 228781831 228787626 5795 False 4671.500000 8925 95.347000 602 6241 2 chr7B.!!$F2 5639
4 TraesCS7D01G268000 chr7B 228388255 228394165 5910 False 912.833333 3323 90.652833 861 5911 6 chr7B.!!$F1 5050
5 TraesCS7D01G268000 chr7B 138662487 138663089 602 True 839.000000 839 91.736000 1 605 1 chr7B.!!$R1 604
6 TraesCS7D01G268000 chr7A 269278019 269283598 5579 True 2697.666667 4146 94.634000 606 6241 3 chr7A.!!$R1 5635
7 TraesCS7D01G268000 chr7A 269957922 269965096 7174 True 968.333333 2737 89.585500 874 5914 6 chr7A.!!$R2 5040
8 TraesCS7D01G268000 chr3B 544920943 544921544 601 False 835.000000 835 91.694000 1 602 1 chr3B.!!$F1 601
9 TraesCS7D01G268000 chr3B 545007587 545008197 610 False 819.000000 819 90.865000 1 612 1 chr3B.!!$F2 611
10 TraesCS7D01G268000 chr2D 147354012 147354595 583 True 830.000000 830 92.295000 1 584 1 chr2D.!!$R1 583
11 TraesCS7D01G268000 chr1B 269085458 269086059 601 True 813.000000 813 91.030000 1 602 1 chr1B.!!$R1 601
12 TraesCS7D01G268000 chr1B 410663244 410663841 597 False 640.000000 640 85.953000 4 601 1 chr1B.!!$F1 597
13 TraesCS7D01G268000 chr4D 276625677 276626224 547 True 763.000000 763 91.788000 61 608 1 chr4D.!!$R1 547
14 TraesCS7D01G268000 chr4B 507233008 507233591 583 True 540.000000 540 83.415000 4 609 1 chr4B.!!$R1 605
15 TraesCS7D01G268000 chr6A 551365521 551366118 597 True 324.000000 324 76.809000 4 602 1 chr6A.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 399 0.385029 CCTCGATGAGTGAGCTCCTG 59.615 60.000 12.15 0.0 40.95 3.86 F
682 687 1.163420 TACTTGTTGTGCCGTGCCTG 61.163 55.000 0.00 0.0 0.00 4.85 F
2535 3654 1.080025 AACTTACCTCGCAGCCGTC 60.080 57.895 0.00 0.0 35.54 4.79 F
2578 3697 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.0 0.00 3.82 F
4312 8384 0.375454 TGGTTGTGCGTTTGTTCTCG 59.625 50.000 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1580 3.319137 TTCATCTCACTCCAGTTTCCG 57.681 47.619 0.0 0.0 0.00 4.30 R
2569 3688 1.089920 GTGATGATGGGTGTGTCTGC 58.910 55.000 0.0 0.0 0.00 4.26 R
4312 8384 0.376852 TTGTCACGCTCAAACTGCAC 59.623 50.000 0.0 0.0 0.00 4.57 R
5178 9273 1.017387 GATCCGACCAATCTGTTGCC 58.983 55.000 0.0 0.0 33.90 4.52 R
5979 10351 1.216178 GCCCATGCACACCATTGTC 59.784 57.895 0.0 0.0 37.47 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.977627 AGGTGCTGGACATCGGATCA 60.978 55.000 0.77 0.00 33.17 2.92
237 238 2.280524 CGGAGTGGTCGCCAACAA 60.281 61.111 0.00 0.00 34.18 2.83
343 344 4.783227 ACTAACTATGTGGGAGTTGTGGAT 59.217 41.667 0.00 0.00 37.68 3.41
354 355 1.149401 TTGTGGATGCACCGGAACA 59.851 52.632 15.34 5.93 42.61 3.18
398 399 0.385029 CCTCGATGAGTGAGCTCCTG 59.615 60.000 12.15 0.00 40.95 3.86
504 505 1.410882 GGTGGATGAGTAGTGAGGAGC 59.589 57.143 0.00 0.00 0.00 4.70
510 511 2.163509 TGAGTAGTGAGGAGCAGTGTC 58.836 52.381 0.00 0.00 0.00 3.67
521 522 1.466167 GAGCAGTGTCGTAACGAGGTA 59.534 52.381 0.00 0.00 36.23 3.08
682 687 1.163420 TACTTGTTGTGCCGTGCCTG 61.163 55.000 0.00 0.00 0.00 4.85
773 779 2.420568 CCGCTTAGGCCAGGTCGTA 61.421 63.158 5.01 0.00 34.44 3.43
809 816 3.414700 CAGGTCTGTTCGCCGTGC 61.415 66.667 0.00 0.00 0.00 5.34
1111 1120 1.699634 CACAGGGAAGAGGAGGAAACA 59.300 52.381 0.00 0.00 0.00 2.83
1122 1131 3.670377 GGAAACAGCGGTGGTGGC 61.670 66.667 20.20 8.39 35.13 5.01
1620 1657 3.871594 GCCAGCATAGACGTTATCTGTTT 59.128 43.478 0.00 0.00 38.49 2.83
1621 1658 4.332819 GCCAGCATAGACGTTATCTGTTTT 59.667 41.667 0.00 0.00 38.49 2.43
1995 3112 5.861727 TCTATGCTGCACATGATAGTTCAT 58.138 37.500 3.57 0.00 43.51 2.57
2086 3203 4.387559 TGTTCAACAGATTGATCGTAACGG 59.612 41.667 0.00 0.00 44.36 4.44
2205 3322 6.383147 CGGTATAGGTAATGTTCTGGGGATAT 59.617 42.308 0.00 0.00 0.00 1.63
2282 3401 8.342634 TCTTTCAACTTCAATGTTACTAGCAAC 58.657 33.333 0.00 0.00 0.00 4.17
2345 3464 8.072238 ACTTGTTCACAAACTTGAAAGAAAAC 57.928 30.769 0.00 0.00 37.24 2.43
2444 3563 1.307343 AGGTGAGGGAGGGATGTGG 60.307 63.158 0.00 0.00 0.00 4.17
2512 3631 4.317488 AGTGGGCTATTGTTGCAAAAATG 58.683 39.130 22.67 14.07 0.00 2.32
2527 3646 3.915437 AAAATGCCACAACTTACCTCG 57.085 42.857 0.00 0.00 0.00 4.63
2535 3654 1.080025 AACTTACCTCGCAGCCGTC 60.080 57.895 0.00 0.00 35.54 4.79
2569 3688 2.401583 TGGTCAGAAATGACGGATGG 57.598 50.000 2.56 0.00 39.57 3.51
2578 3697 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82
3440 7071 8.474577 GCTCATTTCTGAACAATATTAAATGCG 58.525 33.333 11.67 8.51 35.38 4.73
3754 7819 6.763135 GCATTTATGACAGTCAGACTTGGATA 59.237 38.462 9.64 0.00 0.00 2.59
4226 8291 6.868622 TGTGGTAAGTTGCAAATTTACAAGT 58.131 32.000 24.80 4.95 46.86 3.16
4227 8292 7.324178 TGTGGTAAGTTGCAAATTTACAAGTT 58.676 30.769 21.97 21.97 46.86 2.66
4302 8374 2.226200 TGTCATCTTGATTGGTTGTGCG 59.774 45.455 0.00 0.00 0.00 5.34
4312 8384 0.375454 TGGTTGTGCGTTTGTTCTCG 59.625 50.000 0.00 0.00 0.00 4.04
4848 8927 1.242076 CTCTCACCCAACCTGCTTTG 58.758 55.000 0.00 0.00 0.00 2.77
4972 9051 5.049405 GTGAAGTTAACTCACATTGTCCTGG 60.049 44.000 22.51 0.00 34.77 4.45
5178 9273 3.616956 TTAGGTCAGCAGAGGTGATTG 57.383 47.619 2.01 0.00 42.05 2.67
5179 9274 0.617413 AGGTCAGCAGAGGTGATTGG 59.383 55.000 2.01 0.00 42.05 3.16
5248 9343 8.739039 TGAAGTTTACTACAAATGATGGAATGG 58.261 33.333 0.00 0.00 0.00 3.16
5287 9387 1.672356 GGCTCATGTGGTGCTTCGT 60.672 57.895 0.00 0.00 36.29 3.85
5301 9401 2.616376 TGCTTCGTGTGCATAAGTTTGT 59.384 40.909 0.00 0.00 35.31 2.83
5496 9619 7.203910 CCAGAGTCTAAGCGTTTGTATAGATT 58.796 38.462 0.00 0.00 0.00 2.40
5529 9652 3.142174 CCAGAGAAAACCTTCCAGTGAC 58.858 50.000 0.00 0.00 31.28 3.67
5592 9715 3.637432 TCTTACAATTGCAACCGCTTTG 58.363 40.909 0.00 4.57 39.64 2.77
5639 9762 6.659242 TCTTGGTTGGATTAGATCAACTTTCC 59.341 38.462 0.00 0.00 41.91 3.13
5708 9840 0.250467 TCAGTCCCTTGCAGCTCAAC 60.250 55.000 0.00 0.00 0.00 3.18
5787 9920 3.627577 GTCCGAATATGCAACCACATTCT 59.372 43.478 0.00 0.00 33.68 2.40
5813 10011 3.829026 AGCTCCAAGGATCTTCCAAAAAC 59.171 43.478 0.00 0.00 39.61 2.43
5873 10073 1.487976 GCAACCATCTCCATCCTCTCA 59.512 52.381 0.00 0.00 0.00 3.27
5880 10080 0.690411 CTCCATCCTCTCACCCTGCT 60.690 60.000 0.00 0.00 0.00 4.24
5903 10103 0.324091 AGCCAAGCAAGGAATCCCTG 60.324 55.000 0.00 0.00 43.48 4.45
5945 10151 4.819761 GCCAGCTCGATCGCACCA 62.820 66.667 11.09 0.00 0.00 4.17
5957 10163 2.406401 GCACCAAGCTGCTATGCG 59.594 61.111 14.98 7.71 41.15 4.73
6048 10420 1.142097 GCTGGACTACTTCCTCGCC 59.858 63.158 0.00 0.00 46.10 5.54
6096 10468 1.818785 GGTGAGGCTGCTCATCTGC 60.819 63.158 0.00 0.00 35.65 4.26
6106 10478 4.100084 TCATCTGCGCCCTGGTGG 62.100 66.667 4.18 0.00 37.09 4.61
6149 10530 4.514585 GCACCACCACCACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
6150 10531 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
6194 10575 1.307343 AGGACATGGAGGTCTGGGG 60.307 63.158 0.00 0.00 37.91 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.392193 CAGCCCTCTTCGTGCAAGAT 60.392 55.000 2.36 0.00 40.55 2.40
118 119 0.031111 CTCCTGGTCACATAGGGGGA 60.031 60.000 0.00 0.00 34.76 4.81
237 238 2.303022 ACTCGTGGATGGAATCTTGTGT 59.697 45.455 0.00 0.00 44.71 3.72
343 344 2.264005 AACAATAGTGTTCCGGTGCA 57.736 45.000 2.02 0.00 45.00 4.57
354 355 1.445871 GCCCCGTCGAAAACAATAGT 58.554 50.000 0.00 0.00 0.00 2.12
398 399 2.764572 TCCTTCCGACAAGATTCTACCC 59.235 50.000 0.00 0.00 0.00 3.69
504 505 5.165911 ACATATACCTCGTTACGACACTG 57.834 43.478 2.33 0.00 0.00 3.66
510 511 7.325338 CCATGAGTTTACATATACCTCGTTACG 59.675 40.741 0.00 0.00 0.00 3.18
521 522 4.165950 TGCCTCCACCATGAGTTTACATAT 59.834 41.667 0.00 0.00 0.00 1.78
682 687 4.016444 TCATGCCATACTCCCTCAAAAAC 58.984 43.478 0.00 0.00 0.00 2.43
809 816 3.889538 AGAAAAAGAAAACGGAGGAAGGG 59.110 43.478 0.00 0.00 0.00 3.95
819 826 4.259810 GCGCACCTGAAAGAAAAAGAAAAC 60.260 41.667 0.30 0.00 34.07 2.43
885 892 3.532155 CCCTTCGAGGCGAGAGGG 61.532 72.222 16.67 16.67 42.68 4.30
1534 1571 3.435671 CACTCCAGTTTCCGTTCAATACC 59.564 47.826 0.00 0.00 0.00 2.73
1543 1580 3.319137 TTCATCTCACTCCAGTTTCCG 57.681 47.619 0.00 0.00 0.00 4.30
1620 1657 5.177696 GCGGCAATTTAACACCAAAATACAA 59.822 36.000 0.00 0.00 0.00 2.41
1621 1658 4.686554 GCGGCAATTTAACACCAAAATACA 59.313 37.500 0.00 0.00 0.00 2.29
1970 3084 6.114767 TGAACTATCATGTGCAGCATAGAAA 58.885 36.000 0.00 0.00 35.74 2.52
1971 3085 5.673514 TGAACTATCATGTGCAGCATAGAA 58.326 37.500 0.00 0.00 35.74 2.10
1972 3086 5.280654 TGAACTATCATGTGCAGCATAGA 57.719 39.130 0.00 0.00 35.74 1.98
1973 3087 6.555812 AATGAACTATCATGTGCAGCATAG 57.444 37.500 0.00 0.00 45.60 2.23
1995 3112 7.830940 TCGAGTGCCTTTTTATCGTATTAAA 57.169 32.000 0.00 0.00 35.05 1.52
2412 3531 2.553904 CCTCACCTCATCAAAACAGCCT 60.554 50.000 0.00 0.00 0.00 4.58
2512 3631 1.912371 GCTGCGAGGTAAGTTGTGGC 61.912 60.000 0.00 0.00 0.00 5.01
2527 3646 3.965539 ATCTGCACCTGACGGCTGC 62.966 63.158 0.00 0.00 37.64 5.25
2535 3654 3.133542 TCTGACCATTAGATCTGCACCTG 59.866 47.826 5.18 0.00 0.00 4.00
2569 3688 1.089920 GTGATGATGGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
2578 3697 2.238144 AGACTCAGTTGGTGATGATGGG 59.762 50.000 0.00 0.00 33.51 4.00
3589 7653 5.199723 TCAGCAAGGATGTTATGCCATTTA 58.800 37.500 0.00 0.00 40.93 1.40
3615 7679 1.208706 TGTGAACAGGAAGGTGTGGA 58.791 50.000 0.00 0.00 0.00 4.02
3754 7819 7.549134 TGCATCTAACGTCAGAAAATTACAGAT 59.451 33.333 0.00 0.00 0.00 2.90
4108 8173 6.928979 TTCAAAAAGATCAGGTTGTTCGTA 57.071 33.333 0.00 0.00 0.00 3.43
4262 8332 7.830697 AGATGACATTCAATTTGGATAGTGACA 59.169 33.333 0.00 0.00 0.00 3.58
4302 8374 3.354397 CTCAAACTGCACGAGAACAAAC 58.646 45.455 0.00 0.00 0.00 2.93
4312 8384 0.376852 TTGTCACGCTCAAACTGCAC 59.623 50.000 0.00 0.00 0.00 4.57
5178 9273 1.017387 GATCCGACCAATCTGTTGCC 58.983 55.000 0.00 0.00 33.90 4.52
5179 9274 1.667724 CAGATCCGACCAATCTGTTGC 59.332 52.381 5.20 0.00 43.32 4.17
5287 9387 2.741612 GCAGCAACAAACTTATGCACA 58.258 42.857 0.00 0.00 42.45 4.57
5316 9416 1.455383 AAAGCACCGGTGAAGCTTGG 61.455 55.000 38.30 9.57 46.95 3.61
5392 9492 3.243035 CGCTTGTTGAAAATGACACCTCA 60.243 43.478 0.00 0.00 0.00 3.86
5395 9495 1.786579 GCGCTTGTTGAAAATGACACC 59.213 47.619 0.00 0.00 0.00 4.16
5496 9619 8.650143 AAGGTTTTCTCTGGCATCTAAAATTA 57.350 30.769 0.00 0.00 0.00 1.40
5529 9652 7.482654 TGTTCATAGGAAGCGAAATCTTATG 57.517 36.000 0.00 7.76 37.89 1.90
5592 9715 7.823149 AGATTTGCCGGTTTATATATACGAC 57.177 36.000 1.90 1.27 0.00 4.34
5639 9762 7.576750 TGAGCAAAGTAAAAGTATAGTGTCG 57.423 36.000 0.00 0.00 0.00 4.35
5708 9840 3.618780 GAGTGGGCTCAGGTGCAGG 62.619 68.421 0.00 0.00 41.29 4.85
5787 9920 4.927267 TGGAAGATCCTTGGAGCTTTTA 57.073 40.909 19.37 10.19 37.46 1.52
5819 10017 4.852388 GCCTTCCTTTGGGCTTCT 57.148 55.556 0.00 0.00 44.48 2.85
5873 10073 2.437897 CTTGGCTTGGAGCAGGGT 59.562 61.111 2.04 0.00 44.75 4.34
5880 10080 1.549203 GATTCCTTGCTTGGCTTGGA 58.451 50.000 0.00 0.00 0.00 3.53
5945 10151 1.364626 GCAGTCACGCATAGCAGCTT 61.365 55.000 0.00 0.00 0.00 3.74
5979 10351 1.216178 GCCCATGCACACCATTGTC 59.784 57.895 0.00 0.00 37.47 3.18
6048 10420 3.598562 GCGACGACGATGAGCACG 61.599 66.667 12.29 0.00 42.66 5.34
6148 10529 4.814294 GGTAGTCGGCGGGCTGTG 62.814 72.222 8.88 0.00 0.00 3.66
6157 10538 2.482374 GTCGGTGTCGGTAGTCGG 59.518 66.667 0.00 0.00 39.77 4.79
6162 10543 2.034879 GTCCTCGTCGGTGTCGGTA 61.035 63.158 0.00 0.00 36.95 4.02
6194 10575 3.521529 ATATCCAGCTCCGTGCCGC 62.522 63.158 0.00 0.00 44.23 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.