Multiple sequence alignment - TraesCS7D01G267000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G267000 chr7D 100.000 2545 0 0 1 2545 249786097 249788641 0.000000e+00 4700.0
1 TraesCS7D01G267000 chr7D 85.462 736 97 9 19 750 217615676 217616405 0.000000e+00 758.0
2 TraesCS7D01G267000 chr7D 90.021 471 43 4 282 750 249736028 249736496 7.790000e-170 606.0
3 TraesCS7D01G267000 chr7A 92.577 1684 55 18 879 2545 271381955 271380325 0.000000e+00 2353.0
4 TraesCS7D01G267000 chr7A 85.369 745 98 10 5 745 347655104 347655841 0.000000e+00 761.0
5 TraesCS7D01G267000 chr7A 82.789 459 52 15 2074 2528 271624971 271624536 3.970000e-103 385.0
6 TraesCS7D01G267000 chr7B 93.276 1041 48 10 750 1772 226898663 226899699 0.000000e+00 1515.0
7 TraesCS7D01G267000 chr7B 92.533 750 54 2 2 749 226897802 226898551 0.000000e+00 1074.0
8 TraesCS7D01G267000 chr7B 94.205 673 24 7 1881 2545 226899702 226900367 0.000000e+00 1013.0
9 TraesCS7D01G267000 chr7B 91.083 471 40 2 282 750 226677124 226677594 9.930000e-179 636.0
10 TraesCS7D01G267000 chr7B 80.443 767 127 17 1 750 350489457 350488697 4.750000e-157 564.0
11 TraesCS7D01G267000 chr7B 87.606 355 44 0 2 356 491950967 491950613 1.820000e-111 412.0
12 TraesCS7D01G267000 chr1D 86.382 727 96 3 26 750 200226211 200225486 0.000000e+00 791.0
13 TraesCS7D01G267000 chr1D 89.610 308 32 0 1 308 251594612 251594919 2.370000e-105 392.0
14 TraesCS7D01G267000 chr2A 84.441 752 112 5 1 750 285420308 285421056 0.000000e+00 736.0
15 TraesCS7D01G267000 chr6D 82.305 729 104 18 27 750 246555341 246554633 2.170000e-170 608.0
16 TraesCS7D01G267000 chr3B 97.222 36 1 0 1803 1838 578595786 578595821 7.600000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G267000 chr7D 249786097 249788641 2544 False 4700.000000 4700 100.000 1 2545 1 chr7D.!!$F3 2544
1 TraesCS7D01G267000 chr7D 217615676 217616405 729 False 758.000000 758 85.462 19 750 1 chr7D.!!$F1 731
2 TraesCS7D01G267000 chr7A 271380325 271381955 1630 True 2353.000000 2353 92.577 879 2545 1 chr7A.!!$R1 1666
3 TraesCS7D01G267000 chr7A 347655104 347655841 737 False 761.000000 761 85.369 5 745 1 chr7A.!!$F1 740
4 TraesCS7D01G267000 chr7B 226897802 226900367 2565 False 1200.666667 1515 93.338 2 2545 3 chr7B.!!$F2 2543
5 TraesCS7D01G267000 chr7B 350488697 350489457 760 True 564.000000 564 80.443 1 750 1 chr7B.!!$R1 749
6 TraesCS7D01G267000 chr1D 200225486 200226211 725 True 791.000000 791 86.382 26 750 1 chr1D.!!$R1 724
7 TraesCS7D01G267000 chr2A 285420308 285421056 748 False 736.000000 736 84.441 1 750 1 chr2A.!!$F1 749
8 TraesCS7D01G267000 chr6D 246554633 246555341 708 True 608.000000 608 82.305 27 750 1 chr6D.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 749 0.259065 AGATCTACAGCTCGGGACCA 59.741 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2099 0.456221 CGAGACAGGCGTGAAGGTAT 59.544 55.0 14.38 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 224 4.116747 AGCACTATGAGAAGAAGGAACG 57.883 45.455 0.00 0.00 0.00 3.95
257 260 2.035449 ACGATTCTCACACAAACCTCGA 59.965 45.455 0.00 0.00 0.00 4.04
262 265 2.429250 TCTCACACAAACCTCGACTTCA 59.571 45.455 0.00 0.00 0.00 3.02
268 271 3.621268 CACAAACCTCGACTTCAAAGACA 59.379 43.478 0.00 0.00 0.00 3.41
284 287 1.780919 AGACAAGTTTGGGGGCTACTT 59.219 47.619 0.00 0.00 32.60 2.24
378 387 0.618458 TGGAAGGCCGAAGCTATGTT 59.382 50.000 0.00 0.00 39.73 2.71
399 408 1.613925 TGACTCCGTGTTCAGGAAGAG 59.386 52.381 0.00 0.00 37.32 2.85
422 431 1.002468 CCTTCGAAGCTTTGGTGTGTG 60.002 52.381 19.99 0.00 0.00 3.82
639 657 7.931407 ACATCAATATAATCAAGCAGGACGTAA 59.069 33.333 0.00 0.00 0.00 3.18
645 663 2.762745 TCAAGCAGGACGTAAGGTTTC 58.237 47.619 0.00 0.00 46.39 2.78
671 689 2.683933 GAGAGGGCCCGAACCTGA 60.684 66.667 18.44 0.00 38.79 3.86
672 690 2.203938 AGAGGGCCCGAACCTGAA 60.204 61.111 18.44 0.00 38.79 3.02
704 722 0.392060 CTACGCCCCTTGTTACCCAC 60.392 60.000 0.00 0.00 0.00 4.61
707 725 2.353573 CCCCTTGTTACCCACCGG 59.646 66.667 0.00 0.00 0.00 5.28
731 749 0.259065 AGATCTACAGCTCGGGACCA 59.741 55.000 0.00 0.00 0.00 4.02
757 887 2.186903 GATCCGCCGGCTCAAGAA 59.813 61.111 26.68 3.16 0.00 2.52
796 926 4.496336 GGCGGCATGGAGGCTCTT 62.496 66.667 15.23 0.00 41.46 2.85
809 939 1.520342 GCTCTTACAGCCTGCGAGG 60.520 63.158 7.93 0.00 43.17 4.63
831 961 2.463047 CCTAGGAAGGCAGGTACTCT 57.537 55.000 1.05 0.00 35.64 3.24
905 1035 0.889186 CAGGGGAAACTTGGACGGTG 60.889 60.000 0.00 0.00 0.00 4.94
977 1107 3.271055 ACCCCGGATGTGTATACAAAC 57.729 47.619 7.25 2.15 40.84 2.93
978 1108 2.206750 CCCCGGATGTGTATACAAACG 58.793 52.381 7.25 9.53 40.84 3.60
1027 1158 5.300792 GTCCTTTCTTATCCCAAACACAACA 59.699 40.000 0.00 0.00 0.00 3.33
1035 1166 1.544686 CCAAACACAACAACTCGTGC 58.455 50.000 0.00 0.00 36.57 5.34
1106 1237 3.804193 GCTTTTCTGGCGGGCTCG 61.804 66.667 0.00 0.00 39.81 5.03
1250 1381 1.964373 GAAGACGCGGCCCAAGAAA 60.964 57.895 9.25 0.00 0.00 2.52
1357 1488 0.463620 GAGAAGGAAGATGAGGCGCT 59.536 55.000 7.64 0.00 0.00 5.92
1473 1613 7.630242 TGCCTCTCTGTATTTTATTTCCTTG 57.370 36.000 0.00 0.00 0.00 3.61
1511 1651 7.436080 CGCATGGTTTTTGCTTGAGATTATTAT 59.564 33.333 0.00 0.00 37.96 1.28
1512 1652 9.748708 GCATGGTTTTTGCTTGAGATTATTATA 57.251 29.630 0.00 0.00 37.14 0.98
1541 1681 5.389778 TGCTACACTTTGCAATTACAATCG 58.610 37.500 0.00 0.00 36.15 3.34
1546 1686 5.914635 ACACTTTGCAATTACAATCGTGAAG 59.085 36.000 19.87 6.29 36.05 3.02
1606 1747 3.956233 TGCTTTGCTCGATGATTTATGC 58.044 40.909 0.00 0.00 0.00 3.14
1702 1856 2.562298 TCAAAGCATTACAAAGGGGCAG 59.438 45.455 0.00 0.00 0.00 4.85
1703 1857 0.897621 AAGCATTACAAAGGGGCAGC 59.102 50.000 0.00 0.00 0.00 5.25
1704 1858 0.251742 AGCATTACAAAGGGGCAGCA 60.252 50.000 0.00 0.00 0.00 4.41
1705 1859 0.174162 GCATTACAAAGGGGCAGCAG 59.826 55.000 0.00 0.00 0.00 4.24
1706 1860 0.819582 CATTACAAAGGGGCAGCAGG 59.180 55.000 0.00 0.00 0.00 4.85
1707 1861 0.704076 ATTACAAAGGGGCAGCAGGA 59.296 50.000 0.00 0.00 0.00 3.86
1718 1872 0.677731 GCAGCAGGAATGTGGCTACA 60.678 55.000 4.99 4.99 41.89 2.74
1757 1911 6.128526 GGGTAAACTCTCTTGAAGTTTGATCG 60.129 42.308 10.62 0.00 36.57 3.69
1798 1952 4.020543 CTGCCTACTCCCTAGATACATCC 58.979 52.174 0.00 0.00 0.00 3.51
1799 1953 3.018149 GCCTACTCCCTAGATACATCCG 58.982 54.545 0.00 0.00 0.00 4.18
1800 1954 3.561744 GCCTACTCCCTAGATACATCCGT 60.562 52.174 0.00 0.00 0.00 4.69
1801 1955 4.664392 CCTACTCCCTAGATACATCCGTT 58.336 47.826 0.00 0.00 0.00 4.44
1802 1956 5.078256 CCTACTCCCTAGATACATCCGTTT 58.922 45.833 0.00 0.00 0.00 3.60
1803 1957 4.939052 ACTCCCTAGATACATCCGTTTG 57.061 45.455 0.00 0.00 0.00 2.93
1804 1958 4.287552 ACTCCCTAGATACATCCGTTTGT 58.712 43.478 0.00 0.00 0.00 2.83
1805 1959 4.715297 ACTCCCTAGATACATCCGTTTGTT 59.285 41.667 0.00 0.00 0.00 2.83
1806 1960 5.189145 ACTCCCTAGATACATCCGTTTGTTT 59.811 40.000 0.00 0.00 0.00 2.83
1807 1961 5.424757 TCCCTAGATACATCCGTTTGTTTG 58.575 41.667 0.00 0.00 0.00 2.93
1808 1962 5.188163 TCCCTAGATACATCCGTTTGTTTGA 59.812 40.000 0.00 0.00 0.00 2.69
1809 1963 5.523916 CCCTAGATACATCCGTTTGTTTGAG 59.476 44.000 0.00 0.00 0.00 3.02
1810 1964 6.106673 CCTAGATACATCCGTTTGTTTGAGT 58.893 40.000 0.00 0.00 0.00 3.41
1811 1965 5.862924 AGATACATCCGTTTGTTTGAGTG 57.137 39.130 0.00 0.00 0.00 3.51
1812 1966 5.305585 AGATACATCCGTTTGTTTGAGTGT 58.694 37.500 0.00 0.00 0.00 3.55
1813 1967 3.963383 ACATCCGTTTGTTTGAGTGTC 57.037 42.857 0.00 0.00 0.00 3.67
1838 1992 6.847421 ATTAATATGGGACGGAGGTAGTAC 57.153 41.667 0.00 0.00 0.00 2.73
1839 1993 4.466255 AATATGGGACGGAGGTAGTACT 57.534 45.455 0.00 0.00 0.00 2.73
1871 2025 5.163478 CCATCTCCCAGATTGATTTTTGGTC 60.163 44.000 0.00 0.00 31.32 4.02
1898 2052 2.625790 GAGCTGGAGACACTGGGTATAG 59.374 54.545 0.00 0.00 35.60 1.31
1996 2157 3.683847 GCTTCCCAGCAGTTATGTCAGAT 60.684 47.826 0.00 0.00 46.49 2.90
2057 2218 8.764524 ACTTACAAGAGCTATGTACAGAAAAG 57.235 34.615 10.52 9.00 33.22 2.27
2058 2219 7.819900 ACTTACAAGAGCTATGTACAGAAAAGG 59.180 37.037 10.52 0.00 33.22 3.11
2166 2328 2.037208 CACGGGGGAAGGCCATTT 59.963 61.111 5.01 0.00 35.15 2.32
2173 2335 0.904649 GGGAAGGCCATTTTGAAGGG 59.095 55.000 5.01 0.00 35.15 3.95
2174 2336 0.904649 GGAAGGCCATTTTGAAGGGG 59.095 55.000 5.01 0.00 31.67 4.79
2180 2342 1.758862 GCCATTTTGAAGGGGATCTGG 59.241 52.381 0.00 0.00 31.67 3.86
2253 2416 1.419387 AGAAACTGCAAGGAGCTCTGT 59.581 47.619 14.64 0.00 45.94 3.41
2308 2473 0.037326 GTCGATGTGCTCAGGGTGAA 60.037 55.000 0.00 0.00 0.00 3.18
2327 2496 3.181448 TGAACCTGGGTTAGAACTTGGAC 60.181 47.826 4.88 0.00 38.60 4.02
2352 2521 5.130477 GTCTAGATAAATTGTCCCCACCTCA 59.870 44.000 0.00 0.00 0.00 3.86
2448 2619 4.020218 ACAGATGCTAGCCAAGTTAACTCA 60.020 41.667 13.29 0.80 0.00 3.41
2480 2654 3.064958 CCAAGTGAAGCATGCTGACATAG 59.935 47.826 23.48 16.12 33.67 2.23
2482 2656 4.743057 AGTGAAGCATGCTGACATAGTA 57.257 40.909 23.48 0.00 33.67 1.82
2483 2657 4.437239 AGTGAAGCATGCTGACATAGTAC 58.563 43.478 23.48 11.81 33.67 2.73
2484 2658 4.081476 AGTGAAGCATGCTGACATAGTACA 60.081 41.667 23.48 7.68 33.67 2.90
2485 2659 4.033358 GTGAAGCATGCTGACATAGTACAC 59.967 45.833 23.48 14.94 33.67 2.90
2506 2680 1.553690 TAGCACTGGGGAAGCTGACC 61.554 60.000 0.00 0.00 39.30 4.02
2536 2710 4.982916 GCCATTCTACGTCTTCATAACGAT 59.017 41.667 0.00 0.00 42.62 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 224 2.798148 ATCGTCGGCTTTGTGGACCC 62.798 60.000 0.00 0.00 0.00 4.46
257 260 3.031013 CCCCCAAACTTGTCTTTGAAGT 58.969 45.455 0.00 0.00 33.61 3.01
262 265 2.177016 AGTAGCCCCCAAACTTGTCTTT 59.823 45.455 0.00 0.00 0.00 2.52
268 271 1.639108 CCCTAAGTAGCCCCCAAACTT 59.361 52.381 0.00 0.00 37.27 2.66
284 287 0.613853 CCTTCGTCTGGGACACCCTA 60.614 60.000 8.34 0.00 45.70 3.53
378 387 2.035961 CTCTTCCTGAACACGGAGTCAA 59.964 50.000 0.00 0.00 41.61 3.18
399 408 1.947456 ACACCAAAGCTTCGAAGGTTC 59.053 47.619 35.07 16.52 45.17 3.62
422 431 5.049818 CCGACTTCATTATCTTGATTGGAGC 60.050 44.000 0.00 0.00 0.00 4.70
704 722 2.796383 CGAGCTGTAGATCTTGAACCGG 60.796 54.545 0.00 0.00 0.00 5.28
707 725 2.427453 TCCCGAGCTGTAGATCTTGAAC 59.573 50.000 0.00 0.00 0.00 3.18
731 749 2.905880 CGGCGGATCTCGGGTAGT 60.906 66.667 0.00 0.00 39.69 2.73
753 883 2.273912 GGCTGGCTTGCAGCTTCTT 61.274 57.895 12.33 0.00 44.51 2.52
760 890 2.751436 GATTCCGGCTGGCTTGCA 60.751 61.111 6.73 0.00 34.14 4.08
780 910 1.889573 GTAAGAGCCTCCATGCCGC 60.890 63.158 0.00 0.00 0.00 6.53
823 953 9.091220 ACTTCTACAAAGAATGTTAGAGTACCT 57.909 33.333 0.00 0.00 43.63 3.08
879 1009 2.378547 TCCAAGTTTCCCCTGCACTAAT 59.621 45.455 0.00 0.00 0.00 1.73
905 1035 4.275936 CCATCTTGGAACGTATGAAATCCC 59.724 45.833 0.00 0.00 40.96 3.85
968 1098 5.493133 TGGATTGGATTGCGTTTGTATAC 57.507 39.130 0.00 0.00 0.00 1.47
977 1107 0.531657 TGGCTTTGGATTGGATTGCG 59.468 50.000 0.00 0.00 0.00 4.85
978 1108 1.405933 GGTGGCTTTGGATTGGATTGC 60.406 52.381 0.00 0.00 0.00 3.56
1027 1158 2.659610 GGGAGAGCTGCACGAGTT 59.340 61.111 1.02 0.00 0.00 3.01
1035 1166 1.954362 CTTCGACCAGGGGAGAGCTG 61.954 65.000 0.00 0.00 0.00 4.24
1147 1278 2.746277 CGACCCCAAAGAAGCCCG 60.746 66.667 0.00 0.00 0.00 6.13
1250 1381 4.329545 ATGTCCCACCGCTGCGTT 62.330 61.111 21.59 3.02 0.00 4.84
1357 1488 1.607801 CGTGGTCTCCTCATCCTGCA 61.608 60.000 0.00 0.00 0.00 4.41
1473 1613 2.456119 CCATGCGTGCGGAGAGTTC 61.456 63.158 0.00 0.00 0.00 3.01
1511 1651 1.153353 GCAAAGTGTAGCAGCGGTTA 58.847 50.000 0.00 0.00 0.00 2.85
1512 1652 0.817634 TGCAAAGTGTAGCAGCGGTT 60.818 50.000 0.00 0.00 35.51 4.44
1606 1747 2.463653 CGAATTGCACACAACGTGAAAG 59.536 45.455 0.24 0.00 46.69 2.62
1702 1856 1.533625 TGTTGTAGCCACATTCCTGC 58.466 50.000 0.00 0.00 33.76 4.85
1703 1857 4.582701 TTTTGTTGTAGCCACATTCCTG 57.417 40.909 0.00 0.00 33.76 3.86
1704 1858 4.561326 GCATTTTGTTGTAGCCACATTCCT 60.561 41.667 0.00 0.00 33.76 3.36
1705 1859 3.679502 GCATTTTGTTGTAGCCACATTCC 59.320 43.478 0.00 0.00 33.76 3.01
1706 1860 4.386652 CAGCATTTTGTTGTAGCCACATTC 59.613 41.667 0.00 0.00 33.76 2.67
1707 1861 4.309099 CAGCATTTTGTTGTAGCCACATT 58.691 39.130 0.00 0.00 33.76 2.71
1718 1872 3.709141 AGTTTACCCACCAGCATTTTGTT 59.291 39.130 0.00 0.00 0.00 2.83
1757 1911 2.749621 CAGCACTAGGGTCATCCAAAAC 59.250 50.000 0.00 0.00 38.24 2.43
1798 1952 8.849490 CCATATTAATTGACACTCAAACAAACG 58.151 33.333 0.00 0.00 40.12 3.60
1799 1953 9.139174 CCCATATTAATTGACACTCAAACAAAC 57.861 33.333 0.00 0.00 40.12 2.93
1800 1954 9.083422 TCCCATATTAATTGACACTCAAACAAA 57.917 29.630 0.00 0.00 40.12 2.83
1801 1955 8.519526 GTCCCATATTAATTGACACTCAAACAA 58.480 33.333 0.00 0.00 40.12 2.83
1802 1956 7.148323 CGTCCCATATTAATTGACACTCAAACA 60.148 37.037 0.00 0.00 40.12 2.83
1803 1957 7.186804 CGTCCCATATTAATTGACACTCAAAC 58.813 38.462 0.00 0.00 40.12 2.93
1804 1958 6.317642 CCGTCCCATATTAATTGACACTCAAA 59.682 38.462 0.00 0.00 40.12 2.69
1805 1959 5.820423 CCGTCCCATATTAATTGACACTCAA 59.180 40.000 0.00 0.00 41.09 3.02
1806 1960 5.129650 TCCGTCCCATATTAATTGACACTCA 59.870 40.000 0.00 0.00 0.00 3.41
1807 1961 5.607477 TCCGTCCCATATTAATTGACACTC 58.393 41.667 0.00 0.00 0.00 3.51
1808 1962 5.454755 CCTCCGTCCCATATTAATTGACACT 60.455 44.000 0.00 0.00 0.00 3.55
1809 1963 4.755123 CCTCCGTCCCATATTAATTGACAC 59.245 45.833 0.00 0.00 0.00 3.67
1810 1964 4.410883 ACCTCCGTCCCATATTAATTGACA 59.589 41.667 0.00 0.00 0.00 3.58
1811 1965 4.969484 ACCTCCGTCCCATATTAATTGAC 58.031 43.478 0.00 0.00 0.00 3.18
1812 1966 5.842328 ACTACCTCCGTCCCATATTAATTGA 59.158 40.000 0.00 0.00 0.00 2.57
1813 1967 6.110411 ACTACCTCCGTCCCATATTAATTG 57.890 41.667 0.00 0.00 0.00 2.32
1838 1992 7.724490 TCAATCTGGGAGATGGTATATACAG 57.276 40.000 14.70 1.39 34.65 2.74
1839 1993 8.685257 AATCAATCTGGGAGATGGTATATACA 57.315 34.615 14.70 1.84 34.65 2.29
1871 2025 1.067706 CAGTGTCTCCAGCTCTGACAG 60.068 57.143 11.72 0.00 40.73 3.51
1898 2052 5.801947 GCAATGTGATCACAAATGTACTTCC 59.198 40.000 31.00 14.79 45.41 3.46
1937 2098 1.135083 CGAGACAGGCGTGAAGGTATT 60.135 52.381 14.38 0.00 0.00 1.89
1938 2099 0.456221 CGAGACAGGCGTGAAGGTAT 59.544 55.000 14.38 0.00 0.00 2.73
1946 2107 2.675423 TAGGCACGAGACAGGCGT 60.675 61.111 0.00 0.00 43.67 5.68
1996 2157 3.010472 TCCTTCAAGGGCTGATCAATTCA 59.990 43.478 2.75 0.00 35.59 2.57
2057 2218 7.692460 TGCTCATCCAAATCATGAATATACC 57.308 36.000 0.00 0.00 29.74 2.73
2058 2219 8.188799 CCATGCTCATCCAAATCATGAATATAC 58.811 37.037 0.00 0.00 37.34 1.47
2141 2303 1.966451 CTTCCCCCGTGCAGTGTTC 60.966 63.158 0.00 0.00 0.00 3.18
2166 2328 1.289160 CTCACCCAGATCCCCTTCAA 58.711 55.000 0.00 0.00 0.00 2.69
2173 2335 2.102252 CTGAGTAAGCTCACCCAGATCC 59.898 54.545 0.00 0.00 45.94 3.36
2174 2336 2.763448 ACTGAGTAAGCTCACCCAGATC 59.237 50.000 5.38 0.00 45.94 2.75
2180 2342 1.071605 CGCAACTGAGTAAGCTCACC 58.928 55.000 8.07 0.00 45.94 4.02
2253 2416 5.644644 CGGACATGATCGATGATATCAGAA 58.355 41.667 11.78 0.00 36.82 3.02
2308 2473 1.346722 CGTCCAAGTTCTAACCCAGGT 59.653 52.381 0.00 0.00 0.00 4.00
2327 2496 4.101119 AGGTGGGGACAATTTATCTAGACG 59.899 45.833 0.00 0.00 46.06 4.18
2352 2521 5.014966 AGGCTATGAATATGAAGGCCATCTT 59.985 40.000 9.78 5.54 40.40 2.40
2448 2619 1.270678 GCTTCACTTGGGTACTCCGTT 60.271 52.381 0.00 0.00 38.76 4.44
2480 2654 0.604578 TTCCCCAGTGCTACGTGTAC 59.395 55.000 0.00 0.00 0.00 2.90
2482 2656 1.671742 CTTCCCCAGTGCTACGTGT 59.328 57.895 0.00 0.00 0.00 4.49
2483 2657 1.741770 GCTTCCCCAGTGCTACGTG 60.742 63.158 0.00 0.00 0.00 4.49
2484 2658 1.913762 AGCTTCCCCAGTGCTACGT 60.914 57.895 0.00 0.00 35.05 3.57
2485 2659 1.448540 CAGCTTCCCCAGTGCTACG 60.449 63.158 0.00 0.00 35.05 3.51
2506 2680 4.213270 TGAAGACGTAGAATGGCAAGTTTG 59.787 41.667 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.