Multiple sequence alignment - TraesCS7D01G266600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G266600 chr7D 100.000 2954 0 0 1 2954 249431697 249428744 0.000000e+00 5456.0
1 TraesCS7D01G266600 chr7D 96.774 837 24 3 2116 2952 220209320 220208487 0.000000e+00 1393.0
2 TraesCS7D01G266600 chr7D 92.308 234 17 1 2107 2340 9824805 9824573 6.100000e-87 331.0
3 TraesCS7D01G266600 chr7D 95.745 47 2 0 2480 2526 119565995 119566041 3.160000e-10 76.8
4 TraesCS7D01G266600 chr7A 94.513 1294 41 9 846 2116 271729535 271730821 0.000000e+00 1969.0
5 TraesCS7D01G266600 chr7A 93.407 455 14 8 409 850 271728993 271729444 0.000000e+00 660.0
6 TraesCS7D01G266600 chr7A 95.823 407 15 2 1 405 150209482 150209076 0.000000e+00 656.0
7 TraesCS7D01G266600 chr7A 94.431 413 19 4 1 409 119609885 119609473 1.490000e-177 632.0
8 TraesCS7D01G266600 chr7A 80.060 331 52 6 2117 2444 710844448 710844767 1.770000e-57 233.0
9 TraesCS7D01G266600 chr7A 77.778 342 69 5 1073 1412 62838406 62838742 1.390000e-48 204.0
10 TraesCS7D01G266600 chr7A 95.745 47 2 0 2480 2526 124067780 124067826 3.160000e-10 76.8
11 TraesCS7D01G266600 chr7A 82.353 68 9 3 1938 2005 62731811 62731747 4.110000e-04 56.5
12 TraesCS7D01G266600 chr7B 97.043 1150 32 1 967 2116 226438453 226437306 0.000000e+00 1934.0
13 TraesCS7D01G266600 chr7B 80.610 557 40 21 409 929 226439053 226438529 4.650000e-98 368.0
14 TraesCS7D01G266600 chr7B 95.745 47 2 0 2480 2526 80659601 80659647 3.160000e-10 76.8
15 TraesCS7D01G266600 chr1D 98.329 838 12 2 2117 2954 453205567 453204732 0.000000e+00 1469.0
16 TraesCS7D01G266600 chr1D 96.544 839 25 2 2117 2954 393337762 393338597 0.000000e+00 1386.0
17 TraesCS7D01G266600 chr1D 86.726 339 26 8 2117 2454 234835024 234834704 2.800000e-95 359.0
18 TraesCS7D01G266600 chr2D 96.441 843 23 3 2117 2954 523630574 523629734 0.000000e+00 1384.0
19 TraesCS7D01G266600 chr6A 96.049 405 15 1 1 404 39097978 39097574 0.000000e+00 658.0
20 TraesCS7D01G266600 chr6A 96.032 126 5 0 2812 2937 585416866 585416991 3.860000e-49 206.0
21 TraesCS7D01G266600 chr2A 95.833 408 15 2 1 406 58984129 58983722 0.000000e+00 658.0
22 TraesCS7D01G266600 chr2B 96.020 402 15 1 4 404 654583136 654582735 0.000000e+00 652.0
23 TraesCS7D01G266600 chr2B 93.750 224 14 0 2117 2340 730545272 730545049 1.310000e-88 337.0
24 TraesCS7D01G266600 chr2B 83.186 226 35 3 2116 2340 68609291 68609068 1.390000e-48 204.0
25 TraesCS7D01G266600 chr6B 95.355 409 15 3 1 407 255970792 255970386 0.000000e+00 647.0
26 TraesCS7D01G266600 chr6B 94.390 410 20 2 1 410 688474146 688473740 6.950000e-176 627.0
27 TraesCS7D01G266600 chr6B 78.964 309 54 11 1114 1415 68394568 68394264 1.800000e-47 200.0
28 TraesCS7D01G266600 chr5A 94.840 407 19 2 1 405 694522626 694522220 4.150000e-178 634.0
29 TraesCS7D01G266600 chr5A 96.825 126 4 0 2812 2937 454765722 454765597 8.300000e-51 211.0
30 TraesCS7D01G266600 chr5A 96.000 125 5 0 2813 2937 502062144 502062020 1.390000e-48 204.0
31 TraesCS7D01G266600 chr6D 94.828 406 19 2 1 404 462916147 462915742 1.490000e-177 632.0
32 TraesCS7D01G266600 chr6D 77.524 307 62 6 1114 1415 32640823 32640519 8.410000e-41 178.0
33 TraesCS7D01G266600 chr3B 92.632 285 18 3 2526 2810 72477808 72478089 9.860000e-110 407.0
34 TraesCS7D01G266600 chr3B 73.891 969 218 27 1041 1994 814747705 814746757 3.620000e-94 355.0
35 TraesCS7D01G266600 chr3B 74.240 691 144 28 1041 1715 814512957 814512285 2.920000e-65 259.0
36 TraesCS7D01G266600 chr3D 91.930 285 20 2 2526 2810 46471535 46471816 2.130000e-106 396.0
37 TraesCS7D01G266600 chr3D 93.750 224 13 1 2117 2340 345721736 345721958 4.720000e-88 335.0
38 TraesCS7D01G266600 chr3D 91.667 48 3 1 2408 2455 559166997 559167043 6.830000e-07 65.8
39 TraesCS7D01G266600 chr3A 90.972 288 23 2 2523 2810 57886517 57886801 4.620000e-103 385.0
40 TraesCS7D01G266600 chr3A 72.684 1047 233 36 1041 2060 737381984 737380964 1.720000e-77 300.0
41 TraesCS7D01G266600 chr3A 100.000 30 0 0 2417 2446 695670294 695670323 4.110000e-04 56.5
42 TraesCS7D01G266600 chrUn 93.117 247 17 0 2355 2601 42862879 42863125 2.160000e-96 363.0
43 TraesCS7D01G266600 chrUn 96.825 126 4 0 2812 2937 24148645 24148520 8.300000e-51 211.0
44 TraesCS7D01G266600 chr5D 86.726 339 29 6 2117 2454 91635856 91635533 2.160000e-96 363.0
45 TraesCS7D01G266600 chr5B 89.189 259 21 4 2552 2804 212786048 212786305 1.710000e-82 316.0
46 TraesCS7D01G266600 chr5B 81.667 300 47 5 1115 1413 25335690 25335398 2.940000e-60 243.0
47 TraesCS7D01G266600 chr4B 86.643 277 37 0 2529 2805 650701974 650702250 1.030000e-79 307.0
48 TraesCS7D01G266600 chr4D 96.032 126 5 0 2812 2937 22227636 22227511 3.860000e-49 206.0
49 TraesCS7D01G266600 chr4A 76.023 342 75 6 1076 1415 674724091 674723755 1.410000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G266600 chr7D 249428744 249431697 2953 True 5456.0 5456 100.0000 1 2954 1 chr7D.!!$R3 2953
1 TraesCS7D01G266600 chr7D 220208487 220209320 833 True 1393.0 1393 96.7740 2116 2952 1 chr7D.!!$R2 836
2 TraesCS7D01G266600 chr7A 271728993 271730821 1828 False 1314.5 1969 93.9600 409 2116 2 chr7A.!!$F4 1707
3 TraesCS7D01G266600 chr7B 226437306 226439053 1747 True 1151.0 1934 88.8265 409 2116 2 chr7B.!!$R1 1707
4 TraesCS7D01G266600 chr1D 453204732 453205567 835 True 1469.0 1469 98.3290 2117 2954 1 chr1D.!!$R2 837
5 TraesCS7D01G266600 chr1D 393337762 393338597 835 False 1386.0 1386 96.5440 2117 2954 1 chr1D.!!$F1 837
6 TraesCS7D01G266600 chr2D 523629734 523630574 840 True 1384.0 1384 96.4410 2117 2954 1 chr2D.!!$R1 837
7 TraesCS7D01G266600 chr3B 814746757 814747705 948 True 355.0 355 73.8910 1041 1994 1 chr3B.!!$R2 953
8 TraesCS7D01G266600 chr3B 814512285 814512957 672 True 259.0 259 74.2400 1041 1715 1 chr3B.!!$R1 674
9 TraesCS7D01G266600 chr3A 737380964 737381984 1020 True 300.0 300 72.6840 1041 2060 1 chr3A.!!$R1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 324 0.033504 TCTTTCGGTCGCTCTTGCTT 59.966 50.0 0.0 0.0 36.97 3.91 F
1379 1558 0.034670 AGAGCCAAGGTTGAGGATGC 60.035 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2124 1.189403 CGACACTACGATTCGGCTTC 58.811 55.0 11.29 0.0 35.09 3.86 R
2367 2561 0.917333 ACCGGTGGGTCCCATATGTT 60.917 55.0 15.49 0.0 46.01 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.743928 GACCGGCACCTGCTCTTG 60.744 66.667 0.00 0.00 41.70 3.02
19 20 4.711949 CCGGCACCTGCTCTTGCT 62.712 66.667 0.00 0.00 41.70 3.91
20 21 3.123620 CGGCACCTGCTCTTGCTC 61.124 66.667 0.00 0.00 41.70 4.26
21 22 2.350514 GGCACCTGCTCTTGCTCT 59.649 61.111 0.00 0.00 41.70 4.09
22 23 1.744741 GGCACCTGCTCTTGCTCTC 60.745 63.158 0.00 0.00 41.70 3.20
23 24 2.099431 GCACCTGCTCTTGCTCTCG 61.099 63.158 0.00 0.00 40.48 4.04
24 25 1.447489 CACCTGCTCTTGCTCTCGG 60.447 63.158 0.00 0.00 40.48 4.63
25 26 2.186384 CCTGCTCTTGCTCTCGGG 59.814 66.667 0.00 0.00 40.48 5.14
26 27 2.654079 CCTGCTCTTGCTCTCGGGT 61.654 63.158 0.00 0.00 40.48 5.28
27 28 1.447489 CTGCTCTTGCTCTCGGGTG 60.447 63.158 0.00 0.00 40.48 4.61
28 29 1.881903 CTGCTCTTGCTCTCGGGTGA 61.882 60.000 0.00 0.00 40.48 4.02
29 30 1.153667 GCTCTTGCTCTCGGGTGAG 60.154 63.158 0.00 0.00 43.99 3.51
41 42 3.134127 GGTGAGCGCCCAATGACC 61.134 66.667 2.29 0.00 0.00 4.02
42 43 3.134127 GTGAGCGCCCAATGACCC 61.134 66.667 2.29 0.00 0.00 4.46
43 44 4.776322 TGAGCGCCCAATGACCCG 62.776 66.667 2.29 0.00 0.00 5.28
44 45 4.467084 GAGCGCCCAATGACCCGA 62.467 66.667 2.29 0.00 0.00 5.14
45 46 4.778143 AGCGCCCAATGACCCGAC 62.778 66.667 2.29 0.00 0.00 4.79
49 50 2.435938 CCCAATGACCCGACGGTG 60.436 66.667 13.94 6.98 44.88 4.94
50 51 3.124921 CCAATGACCCGACGGTGC 61.125 66.667 13.94 4.66 44.88 5.01
51 52 3.487202 CAATGACCCGACGGTGCG 61.487 66.667 13.94 0.00 44.88 5.34
71 72 3.528370 GCCTTCGAGCCTAGGCGA 61.528 66.667 27.83 17.29 46.65 5.54
72 73 3.492311 GCCTTCGAGCCTAGGCGAG 62.492 68.421 27.83 23.93 46.65 5.03
80 81 1.369321 GCCTAGGCGAGAGGATTGG 59.631 63.158 20.16 0.00 35.99 3.16
81 82 2.053618 CCTAGGCGAGAGGATTGGG 58.946 63.158 0.00 0.00 35.99 4.12
82 83 1.476007 CCTAGGCGAGAGGATTGGGG 61.476 65.000 0.00 0.00 35.99 4.96
83 84 0.760945 CTAGGCGAGAGGATTGGGGT 60.761 60.000 0.00 0.00 0.00 4.95
84 85 0.759436 TAGGCGAGAGGATTGGGGTC 60.759 60.000 0.00 0.00 0.00 4.46
85 86 2.066999 GGCGAGAGGATTGGGGTCT 61.067 63.158 0.00 0.00 0.00 3.85
86 87 1.627297 GGCGAGAGGATTGGGGTCTT 61.627 60.000 0.00 0.00 0.00 3.01
87 88 0.179070 GCGAGAGGATTGGGGTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
88 89 1.490574 CGAGAGGATTGGGGTCTTCT 58.509 55.000 0.00 0.00 37.28 2.85
89 90 1.834263 CGAGAGGATTGGGGTCTTCTT 59.166 52.381 0.00 0.00 35.03 2.52
90 91 2.159028 CGAGAGGATTGGGGTCTTCTTC 60.159 54.545 0.00 0.00 35.03 2.87
91 92 1.834263 AGAGGATTGGGGTCTTCTTCG 59.166 52.381 0.00 0.00 31.27 3.79
92 93 0.912486 AGGATTGGGGTCTTCTTCGG 59.088 55.000 0.00 0.00 0.00 4.30
93 94 0.748367 GGATTGGGGTCTTCTTCGGC 60.748 60.000 0.00 0.00 0.00 5.54
94 95 1.078426 ATTGGGGTCTTCTTCGGCG 60.078 57.895 0.00 0.00 0.00 6.46
95 96 1.838073 ATTGGGGTCTTCTTCGGCGT 61.838 55.000 6.85 0.00 0.00 5.68
96 97 2.047213 TTGGGGTCTTCTTCGGCGTT 62.047 55.000 6.85 0.00 0.00 4.84
97 98 2.033194 GGGGTCTTCTTCGGCGTTG 61.033 63.158 6.85 0.64 0.00 4.10
98 99 2.033194 GGGTCTTCTTCGGCGTTGG 61.033 63.158 6.85 0.00 0.00 3.77
99 100 1.005394 GGTCTTCTTCGGCGTTGGA 60.005 57.895 6.85 0.65 0.00 3.53
100 101 0.601841 GGTCTTCTTCGGCGTTGGAA 60.602 55.000 6.85 9.03 0.00 3.53
101 102 0.790814 GTCTTCTTCGGCGTTGGAAG 59.209 55.000 22.32 22.32 41.74 3.46
102 103 0.677288 TCTTCTTCGGCGTTGGAAGA 59.323 50.000 24.81 24.81 45.95 2.87
103 104 0.790814 CTTCTTCGGCGTTGGAAGAC 59.209 55.000 23.21 0.00 46.92 3.01
104 105 0.105224 TTCTTCGGCGTTGGAAGACA 59.895 50.000 6.85 0.00 46.92 3.41
105 106 0.319555 TCTTCGGCGTTGGAAGACAG 60.320 55.000 6.85 0.00 43.57 3.51
106 107 1.291877 CTTCGGCGTTGGAAGACAGG 61.292 60.000 6.85 0.00 42.74 4.00
107 108 2.030562 CGGCGTTGGAAGACAGGT 59.969 61.111 0.00 0.00 0.00 4.00
108 109 1.597027 CGGCGTTGGAAGACAGGTT 60.597 57.895 0.00 0.00 0.00 3.50
109 110 1.164041 CGGCGTTGGAAGACAGGTTT 61.164 55.000 0.00 0.00 0.00 3.27
110 111 0.591659 GGCGTTGGAAGACAGGTTTC 59.408 55.000 0.00 0.00 0.00 2.78
111 112 0.234884 GCGTTGGAAGACAGGTTTCG 59.765 55.000 0.00 0.00 0.00 3.46
112 113 1.578583 CGTTGGAAGACAGGTTTCGT 58.421 50.000 0.00 0.00 0.00 3.85
113 114 1.260561 CGTTGGAAGACAGGTTTCGTG 59.739 52.381 0.00 0.00 0.00 4.35
114 115 2.557317 GTTGGAAGACAGGTTTCGTGA 58.443 47.619 0.00 0.00 0.00 4.35
115 116 2.234300 TGGAAGACAGGTTTCGTGAC 57.766 50.000 0.00 0.00 0.00 3.67
116 117 1.202604 TGGAAGACAGGTTTCGTGACC 60.203 52.381 2.35 2.35 40.11 4.02
117 118 1.509703 GAAGACAGGTTTCGTGACCC 58.490 55.000 6.38 0.00 40.73 4.46
118 119 0.108019 AAGACAGGTTTCGTGACCCC 59.892 55.000 6.38 0.00 40.73 4.95
119 120 1.052124 AGACAGGTTTCGTGACCCCA 61.052 55.000 6.38 0.00 40.73 4.96
120 121 0.179040 GACAGGTTTCGTGACCCCAA 60.179 55.000 6.38 0.00 40.73 4.12
121 122 0.476771 ACAGGTTTCGTGACCCCAAT 59.523 50.000 6.38 0.00 40.73 3.16
122 123 1.165270 CAGGTTTCGTGACCCCAATC 58.835 55.000 6.38 0.00 40.73 2.67
123 124 0.037734 AGGTTTCGTGACCCCAATCC 59.962 55.000 6.38 0.00 40.73 3.01
124 125 0.963856 GGTTTCGTGACCCCAATCCC 60.964 60.000 0.00 0.00 33.41 3.85
125 126 0.250989 GTTTCGTGACCCCAATCCCA 60.251 55.000 0.00 0.00 0.00 4.37
126 127 0.250989 TTTCGTGACCCCAATCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
127 128 2.435938 CGTGACCCCAATCCCACG 60.436 66.667 0.00 0.00 44.66 4.94
128 129 3.074281 GTGACCCCAATCCCACGA 58.926 61.111 0.00 0.00 0.00 4.35
129 130 1.607612 GTGACCCCAATCCCACGAT 59.392 57.895 0.00 0.00 0.00 3.73
130 131 0.463833 GTGACCCCAATCCCACGATC 60.464 60.000 0.00 0.00 0.00 3.69
131 132 1.148498 GACCCCAATCCCACGATCC 59.852 63.158 0.00 0.00 0.00 3.36
132 133 2.111043 CCCCAATCCCACGATCCG 59.889 66.667 0.00 0.00 0.00 4.18
133 134 2.111043 CCCAATCCCACGATCCGG 59.889 66.667 0.00 0.00 0.00 5.14
134 135 2.591715 CCAATCCCACGATCCGGC 60.592 66.667 0.00 0.00 0.00 6.13
135 136 2.505982 CAATCCCACGATCCGGCT 59.494 61.111 0.00 0.00 0.00 5.52
136 137 1.889105 CAATCCCACGATCCGGCTG 60.889 63.158 0.00 0.00 0.00 4.85
137 138 3.757248 AATCCCACGATCCGGCTGC 62.757 63.158 0.00 0.00 0.00 5.25
159 160 3.879912 CAGTTCTTGCAGGCCTTTG 57.120 52.632 0.00 0.00 0.00 2.77
160 161 0.316204 CAGTTCTTGCAGGCCTTTGG 59.684 55.000 0.00 0.00 0.00 3.28
171 172 3.271250 GCCTTTGGCTGATCCTTGA 57.729 52.632 0.73 0.00 46.69 3.02
172 173 0.813821 GCCTTTGGCTGATCCTTGAC 59.186 55.000 0.73 0.00 46.69 3.18
173 174 1.887956 GCCTTTGGCTGATCCTTGACA 60.888 52.381 0.73 0.00 46.69 3.58
174 175 1.815003 CCTTTGGCTGATCCTTGACAC 59.185 52.381 0.00 0.00 35.26 3.67
175 176 2.553904 CCTTTGGCTGATCCTTGACACT 60.554 50.000 0.00 0.00 35.26 3.55
176 177 3.307691 CCTTTGGCTGATCCTTGACACTA 60.308 47.826 0.00 0.00 35.26 2.74
177 178 3.334583 TTGGCTGATCCTTGACACTAC 57.665 47.619 0.00 0.00 35.26 2.73
178 179 2.540383 TGGCTGATCCTTGACACTACT 58.460 47.619 0.00 0.00 35.26 2.57
179 180 2.497675 TGGCTGATCCTTGACACTACTC 59.502 50.000 0.00 0.00 35.26 2.59
180 181 2.763448 GGCTGATCCTTGACACTACTCT 59.237 50.000 0.00 0.00 0.00 3.24
181 182 3.430098 GGCTGATCCTTGACACTACTCTG 60.430 52.174 0.00 0.00 0.00 3.35
182 183 3.779759 CTGATCCTTGACACTACTCTGC 58.220 50.000 0.00 0.00 0.00 4.26
183 184 3.435275 TGATCCTTGACACTACTCTGCT 58.565 45.455 0.00 0.00 0.00 4.24
184 185 3.445450 TGATCCTTGACACTACTCTGCTC 59.555 47.826 0.00 0.00 0.00 4.26
185 186 2.171840 TCCTTGACACTACTCTGCTCC 58.828 52.381 0.00 0.00 0.00 4.70
186 187 1.205893 CCTTGACACTACTCTGCTCCC 59.794 57.143 0.00 0.00 0.00 4.30
187 188 2.175202 CTTGACACTACTCTGCTCCCT 58.825 52.381 0.00 0.00 0.00 4.20
188 189 2.310779 TGACACTACTCTGCTCCCTT 57.689 50.000 0.00 0.00 0.00 3.95
189 190 1.895798 TGACACTACTCTGCTCCCTTG 59.104 52.381 0.00 0.00 0.00 3.61
190 191 0.610687 ACACTACTCTGCTCCCTTGC 59.389 55.000 0.00 0.00 0.00 4.01
191 192 0.901124 CACTACTCTGCTCCCTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
192 193 1.134848 CACTACTCTGCTCCCTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
193 194 1.272985 ACTACTCTGCTCCCTTGCTCT 60.273 52.381 0.00 0.00 0.00 4.09
194 195 1.830477 CTACTCTGCTCCCTTGCTCTT 59.170 52.381 0.00 0.00 0.00 2.85
195 196 0.324285 ACTCTGCTCCCTTGCTCTTG 59.676 55.000 0.00 0.00 0.00 3.02
196 197 0.392729 CTCTGCTCCCTTGCTCTTGG 60.393 60.000 0.00 0.00 0.00 3.61
197 198 1.130054 TCTGCTCCCTTGCTCTTGGT 61.130 55.000 0.00 0.00 0.00 3.67
198 199 0.959372 CTGCTCCCTTGCTCTTGGTG 60.959 60.000 0.00 0.00 0.00 4.17
199 200 2.338785 GCTCCCTTGCTCTTGGTGC 61.339 63.158 0.00 0.00 0.00 5.01
200 201 1.676967 CTCCCTTGCTCTTGGTGCC 60.677 63.158 0.00 0.00 0.00 5.01
201 202 3.058160 CCCTTGCTCTTGGTGCCG 61.058 66.667 0.00 0.00 0.00 5.69
202 203 2.032528 CCTTGCTCTTGGTGCCGA 59.967 61.111 0.00 0.00 0.00 5.54
203 204 1.377725 CCTTGCTCTTGGTGCCGAT 60.378 57.895 0.00 0.00 0.00 4.18
204 205 1.651240 CCTTGCTCTTGGTGCCGATG 61.651 60.000 0.00 0.00 0.00 3.84
205 206 0.957395 CTTGCTCTTGGTGCCGATGT 60.957 55.000 0.00 0.00 0.00 3.06
206 207 1.236616 TTGCTCTTGGTGCCGATGTG 61.237 55.000 0.00 0.00 0.00 3.21
207 208 3.044059 GCTCTTGGTGCCGATGTGC 62.044 63.158 0.00 0.00 0.00 4.57
208 209 1.672030 CTCTTGGTGCCGATGTGCA 60.672 57.895 0.00 0.00 39.37 4.57
209 210 1.642037 CTCTTGGTGCCGATGTGCAG 61.642 60.000 0.00 0.00 43.02 4.41
217 218 3.869272 CGATGTGCAGCGGGCTTC 61.869 66.667 1.58 0.00 45.15 3.86
218 219 3.869272 GATGTGCAGCGGGCTTCG 61.869 66.667 5.05 0.00 45.15 3.79
219 220 4.393155 ATGTGCAGCGGGCTTCGA 62.393 61.111 5.05 0.00 45.15 3.71
222 223 4.393155 TGCAGCGGGCTTCGACAT 62.393 61.111 5.05 0.00 45.15 3.06
223 224 3.127533 GCAGCGGGCTTCGACATT 61.128 61.111 4.34 0.00 42.43 2.71
224 225 1.813753 GCAGCGGGCTTCGACATTA 60.814 57.895 4.34 0.00 42.43 1.90
225 226 2.006772 CAGCGGGCTTCGACATTAC 58.993 57.895 4.34 0.00 42.43 1.89
226 227 0.460284 CAGCGGGCTTCGACATTACT 60.460 55.000 4.34 0.00 42.43 2.24
227 228 0.249398 AGCGGGCTTCGACATTACTT 59.751 50.000 4.34 0.00 42.43 2.24
228 229 0.373716 GCGGGCTTCGACATTACTTG 59.626 55.000 4.34 0.00 42.43 3.16
229 230 0.373716 CGGGCTTCGACATTACTTGC 59.626 55.000 0.00 0.00 42.43 4.01
230 231 1.448985 GGGCTTCGACATTACTTGCA 58.551 50.000 0.00 0.00 0.00 4.08
231 232 1.398390 GGGCTTCGACATTACTTGCAG 59.602 52.381 0.00 0.00 0.00 4.41
232 233 1.398390 GGCTTCGACATTACTTGCAGG 59.602 52.381 0.00 0.00 0.00 4.85
233 234 2.076863 GCTTCGACATTACTTGCAGGT 58.923 47.619 6.72 6.72 0.00 4.00
234 235 2.094417 GCTTCGACATTACTTGCAGGTC 59.906 50.000 4.04 0.00 0.00 3.85
235 236 3.589988 CTTCGACATTACTTGCAGGTCT 58.410 45.455 4.04 0.00 0.00 3.85
236 237 3.678056 TCGACATTACTTGCAGGTCTT 57.322 42.857 4.04 0.00 0.00 3.01
237 238 4.002906 TCGACATTACTTGCAGGTCTTT 57.997 40.909 4.04 0.00 0.00 2.52
238 239 3.994392 TCGACATTACTTGCAGGTCTTTC 59.006 43.478 4.04 0.00 0.00 2.62
239 240 3.745975 CGACATTACTTGCAGGTCTTTCA 59.254 43.478 4.04 0.00 0.00 2.69
240 241 4.143030 CGACATTACTTGCAGGTCTTTCAG 60.143 45.833 4.04 0.00 0.00 3.02
241 242 4.074970 ACATTACTTGCAGGTCTTTCAGG 58.925 43.478 4.04 0.00 0.00 3.86
242 243 3.857157 TTACTTGCAGGTCTTTCAGGT 57.143 42.857 4.04 0.00 0.00 4.00
243 244 1.972872 ACTTGCAGGTCTTTCAGGTG 58.027 50.000 0.00 0.00 0.00 4.00
244 245 1.212935 ACTTGCAGGTCTTTCAGGTGT 59.787 47.619 0.00 0.00 0.00 4.16
245 246 2.438021 ACTTGCAGGTCTTTCAGGTGTA 59.562 45.455 0.00 0.00 0.00 2.90
246 247 2.543777 TGCAGGTCTTTCAGGTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
247 248 2.047061 TGCAGGTCTTTCAGGTGTACT 58.953 47.619 0.00 0.00 0.00 2.73
248 249 2.438021 TGCAGGTCTTTCAGGTGTACTT 59.562 45.455 0.00 0.00 0.00 2.24
249 250 3.067833 GCAGGTCTTTCAGGTGTACTTC 58.932 50.000 0.00 0.00 0.00 3.01
250 251 3.244249 GCAGGTCTTTCAGGTGTACTTCT 60.244 47.826 0.00 0.00 0.00 2.85
251 252 4.021368 GCAGGTCTTTCAGGTGTACTTCTA 60.021 45.833 0.00 0.00 0.00 2.10
252 253 5.337652 GCAGGTCTTTCAGGTGTACTTCTAT 60.338 44.000 0.00 0.00 0.00 1.98
253 254 6.102663 CAGGTCTTTCAGGTGTACTTCTATG 58.897 44.000 0.00 0.00 0.00 2.23
254 255 4.870991 GGTCTTTCAGGTGTACTTCTATGC 59.129 45.833 0.00 0.00 0.00 3.14
255 256 5.479306 GTCTTTCAGGTGTACTTCTATGCA 58.521 41.667 0.00 0.00 0.00 3.96
256 257 6.109359 GTCTTTCAGGTGTACTTCTATGCAT 58.891 40.000 3.79 3.79 0.00 3.96
257 258 6.036517 GTCTTTCAGGTGTACTTCTATGCATG 59.963 42.308 10.16 0.00 0.00 4.06
258 259 3.797039 TCAGGTGTACTTCTATGCATGC 58.203 45.455 11.82 11.82 0.00 4.06
259 260 3.197549 TCAGGTGTACTTCTATGCATGCA 59.802 43.478 25.04 25.04 0.00 3.96
260 261 3.558829 CAGGTGTACTTCTATGCATGCAG 59.441 47.826 26.69 13.62 0.00 4.41
261 262 3.198635 AGGTGTACTTCTATGCATGCAGT 59.801 43.478 26.69 19.31 0.00 4.40
262 263 4.405680 AGGTGTACTTCTATGCATGCAGTA 59.594 41.667 26.69 18.26 0.00 2.74
263 264 4.747108 GGTGTACTTCTATGCATGCAGTAG 59.253 45.833 26.69 23.47 0.00 2.57
264 265 5.352284 GTGTACTTCTATGCATGCAGTAGT 58.648 41.667 26.69 23.88 0.00 2.73
265 266 5.233050 GTGTACTTCTATGCATGCAGTAGTG 59.767 44.000 26.69 21.05 0.00 2.74
266 267 4.478206 ACTTCTATGCATGCAGTAGTGT 57.522 40.909 26.69 21.54 0.00 3.55
267 268 4.186926 ACTTCTATGCATGCAGTAGTGTG 58.813 43.478 26.69 18.99 0.00 3.82
268 269 2.554142 TCTATGCATGCAGTAGTGTGC 58.446 47.619 26.69 6.27 44.27 4.57
274 275 2.170985 GCAGTAGTGTGCGTTGCG 59.829 61.111 0.00 0.00 32.74 4.85
275 276 2.594962 GCAGTAGTGTGCGTTGCGT 61.595 57.895 0.00 0.00 32.74 5.24
276 277 1.931551 CAGTAGTGTGCGTTGCGTT 59.068 52.632 0.00 0.00 0.00 4.84
277 278 0.383002 CAGTAGTGTGCGTTGCGTTG 60.383 55.000 0.00 0.00 0.00 4.10
278 279 0.808453 AGTAGTGTGCGTTGCGTTGT 60.808 50.000 0.00 0.00 0.00 3.32
279 280 0.854062 GTAGTGTGCGTTGCGTTGTA 59.146 50.000 0.00 0.00 0.00 2.41
280 281 1.258458 GTAGTGTGCGTTGCGTTGTAA 59.742 47.619 0.00 0.00 0.00 2.41
281 282 0.727970 AGTGTGCGTTGCGTTGTAAA 59.272 45.000 0.00 0.00 0.00 2.01
282 283 1.332375 AGTGTGCGTTGCGTTGTAAAT 59.668 42.857 0.00 0.00 0.00 1.40
283 284 2.113289 GTGTGCGTTGCGTTGTAAATT 58.887 42.857 0.00 0.00 0.00 1.82
284 285 2.098116 GTGTGCGTTGCGTTGTAAATTG 60.098 45.455 0.00 0.00 0.00 2.32
285 286 1.124462 TGCGTTGCGTTGTAAATTGC 58.876 45.000 0.00 0.00 0.00 3.56
286 287 1.268794 TGCGTTGCGTTGTAAATTGCT 60.269 42.857 0.00 0.00 32.21 3.91
287 288 1.382088 GCGTTGCGTTGTAAATTGCTC 59.618 47.619 0.00 0.00 32.21 4.26
288 289 2.916111 CGTTGCGTTGTAAATTGCTCT 58.084 42.857 0.00 0.00 32.21 4.09
289 290 2.651703 CGTTGCGTTGTAAATTGCTCTG 59.348 45.455 0.00 0.00 32.21 3.35
290 291 3.628017 GTTGCGTTGTAAATTGCTCTGT 58.372 40.909 0.00 0.00 32.21 3.41
291 292 3.536158 TGCGTTGTAAATTGCTCTGTC 57.464 42.857 0.00 0.00 32.21 3.51
292 293 2.875317 TGCGTTGTAAATTGCTCTGTCA 59.125 40.909 0.00 0.00 32.21 3.58
293 294 3.058983 TGCGTTGTAAATTGCTCTGTCAG 60.059 43.478 0.00 0.00 32.21 3.51
301 302 4.613929 GCTCTGTCAGCTCCCTTG 57.386 61.111 0.00 0.00 45.83 3.61
302 303 1.676384 GCTCTGTCAGCTCCCTTGT 59.324 57.895 0.00 0.00 45.83 3.16
303 304 0.898320 GCTCTGTCAGCTCCCTTGTA 59.102 55.000 0.00 0.00 45.83 2.41
304 305 1.484240 GCTCTGTCAGCTCCCTTGTAT 59.516 52.381 0.00 0.00 45.83 2.29
305 306 2.482839 GCTCTGTCAGCTCCCTTGTATC 60.483 54.545 0.00 0.00 45.83 2.24
306 307 3.030291 CTCTGTCAGCTCCCTTGTATCT 58.970 50.000 0.00 0.00 0.00 1.98
307 308 3.445008 TCTGTCAGCTCCCTTGTATCTT 58.555 45.455 0.00 0.00 0.00 2.40
308 309 3.840666 TCTGTCAGCTCCCTTGTATCTTT 59.159 43.478 0.00 0.00 0.00 2.52
309 310 4.081420 TCTGTCAGCTCCCTTGTATCTTTC 60.081 45.833 0.00 0.00 0.00 2.62
310 311 3.190874 GTCAGCTCCCTTGTATCTTTCG 58.809 50.000 0.00 0.00 0.00 3.46
311 312 2.168521 TCAGCTCCCTTGTATCTTTCGG 59.831 50.000 0.00 0.00 0.00 4.30
312 313 2.093447 CAGCTCCCTTGTATCTTTCGGT 60.093 50.000 0.00 0.00 0.00 4.69
313 314 2.168728 AGCTCCCTTGTATCTTTCGGTC 59.831 50.000 0.00 0.00 0.00 4.79
314 315 2.810650 CTCCCTTGTATCTTTCGGTCG 58.189 52.381 0.00 0.00 0.00 4.79
315 316 1.134907 TCCCTTGTATCTTTCGGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
316 317 1.134788 CCCTTGTATCTTTCGGTCGCT 60.135 52.381 0.00 0.00 0.00 4.93
317 318 2.194271 CCTTGTATCTTTCGGTCGCTC 58.806 52.381 0.00 0.00 0.00 5.03
318 319 2.159226 CCTTGTATCTTTCGGTCGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
319 320 3.512680 CTTGTATCTTTCGGTCGCTCTT 58.487 45.455 0.00 0.00 0.00 2.85
320 321 2.876091 TGTATCTTTCGGTCGCTCTTG 58.124 47.619 0.00 0.00 0.00 3.02
321 322 1.588861 GTATCTTTCGGTCGCTCTTGC 59.411 52.381 0.00 0.00 0.00 4.01
322 323 0.247736 ATCTTTCGGTCGCTCTTGCT 59.752 50.000 0.00 0.00 36.97 3.91
323 324 0.033504 TCTTTCGGTCGCTCTTGCTT 59.966 50.000 0.00 0.00 36.97 3.91
324 325 0.164647 CTTTCGGTCGCTCTTGCTTG 59.835 55.000 0.00 0.00 36.97 4.01
325 326 1.227999 TTTCGGTCGCTCTTGCTTGG 61.228 55.000 0.00 0.00 36.97 3.61
326 327 2.357517 CGGTCGCTCTTGCTTGGT 60.358 61.111 0.00 0.00 36.97 3.67
327 328 2.671177 CGGTCGCTCTTGCTTGGTG 61.671 63.158 0.00 0.00 36.97 4.17
328 329 2.328099 GGTCGCTCTTGCTTGGTGG 61.328 63.158 0.00 0.00 36.97 4.61
329 330 2.669569 TCGCTCTTGCTTGGTGGC 60.670 61.111 0.00 0.00 36.97 5.01
330 331 3.741476 CGCTCTTGCTTGGTGGCC 61.741 66.667 0.00 0.00 36.97 5.36
331 332 2.282745 GCTCTTGCTTGGTGGCCT 60.283 61.111 3.32 0.00 36.03 5.19
332 333 1.905354 GCTCTTGCTTGGTGGCCTT 60.905 57.895 3.32 0.00 36.03 4.35
333 334 1.962144 CTCTTGCTTGGTGGCCTTG 59.038 57.895 3.32 0.00 0.00 3.61
334 335 0.825010 CTCTTGCTTGGTGGCCTTGT 60.825 55.000 3.32 0.00 0.00 3.16
335 336 1.108727 TCTTGCTTGGTGGCCTTGTG 61.109 55.000 3.32 0.00 0.00 3.33
336 337 1.381056 TTGCTTGGTGGCCTTGTGT 60.381 52.632 3.32 0.00 0.00 3.72
337 338 0.106469 TTGCTTGGTGGCCTTGTGTA 60.106 50.000 3.32 0.00 0.00 2.90
338 339 0.106469 TGCTTGGTGGCCTTGTGTAA 60.106 50.000 3.32 0.00 0.00 2.41
339 340 1.256812 GCTTGGTGGCCTTGTGTAAT 58.743 50.000 3.32 0.00 0.00 1.89
340 341 1.202348 GCTTGGTGGCCTTGTGTAATC 59.798 52.381 3.32 0.00 0.00 1.75
341 342 2.795329 CTTGGTGGCCTTGTGTAATCT 58.205 47.619 3.32 0.00 0.00 2.40
342 343 2.969821 TGGTGGCCTTGTGTAATCTT 57.030 45.000 3.32 0.00 0.00 2.40
343 344 2.513753 TGGTGGCCTTGTGTAATCTTG 58.486 47.619 3.32 0.00 0.00 3.02
344 345 1.818674 GGTGGCCTTGTGTAATCTTGG 59.181 52.381 3.32 0.00 0.00 3.61
345 346 1.202348 GTGGCCTTGTGTAATCTTGGC 59.798 52.381 3.32 0.00 39.61 4.52
347 348 0.451783 GCCTTGTGTAATCTTGGCCG 59.548 55.000 0.00 0.00 34.81 6.13
348 349 1.094785 CCTTGTGTAATCTTGGCCGG 58.905 55.000 0.00 0.00 0.00 6.13
349 350 1.613255 CCTTGTGTAATCTTGGCCGGT 60.613 52.381 1.90 0.00 0.00 5.28
350 351 2.159382 CTTGTGTAATCTTGGCCGGTT 58.841 47.619 1.90 0.00 0.00 4.44
351 352 1.529226 TGTGTAATCTTGGCCGGTTG 58.471 50.000 1.90 0.00 0.00 3.77
352 353 1.072489 TGTGTAATCTTGGCCGGTTGA 59.928 47.619 1.90 0.00 0.00 3.18
353 354 2.290641 TGTGTAATCTTGGCCGGTTGAT 60.291 45.455 1.90 0.00 0.00 2.57
354 355 2.097466 GTGTAATCTTGGCCGGTTGATG 59.903 50.000 1.90 0.00 0.00 3.07
355 356 1.676006 GTAATCTTGGCCGGTTGATGG 59.324 52.381 1.90 0.00 0.00 3.51
365 366 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
366 367 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
367 368 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
368 369 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
369 370 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
370 371 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
380 381 5.705609 TTGTTAATTCAAAGTCAGGCTCC 57.294 39.130 0.00 0.00 0.00 4.70
381 382 4.079253 TGTTAATTCAAAGTCAGGCTCCC 58.921 43.478 0.00 0.00 0.00 4.30
382 383 2.222227 AATTCAAAGTCAGGCTCCCC 57.778 50.000 0.00 0.00 0.00 4.81
383 384 1.376649 ATTCAAAGTCAGGCTCCCCT 58.623 50.000 0.00 0.00 44.25 4.79
384 385 1.149101 TTCAAAGTCAGGCTCCCCTT 58.851 50.000 0.00 0.00 40.33 3.95
385 386 0.401738 TCAAAGTCAGGCTCCCCTTG 59.598 55.000 0.00 0.00 40.33 3.61
386 387 0.401738 CAAAGTCAGGCTCCCCTTGA 59.598 55.000 0.00 0.00 40.33 3.02
387 388 0.695347 AAAGTCAGGCTCCCCTTGAG 59.305 55.000 0.00 0.00 40.33 3.02
394 395 3.393360 CTCCCCTTGAGCCTTCGT 58.607 61.111 0.00 0.00 33.47 3.85
395 396 1.679898 CTCCCCTTGAGCCTTCGTT 59.320 57.895 0.00 0.00 33.47 3.85
396 397 0.036875 CTCCCCTTGAGCCTTCGTTT 59.963 55.000 0.00 0.00 33.47 3.60
397 398 1.278127 CTCCCCTTGAGCCTTCGTTTA 59.722 52.381 0.00 0.00 33.47 2.01
398 399 1.700739 TCCCCTTGAGCCTTCGTTTAA 59.299 47.619 0.00 0.00 0.00 1.52
399 400 2.106857 TCCCCTTGAGCCTTCGTTTAAA 59.893 45.455 0.00 0.00 0.00 1.52
400 401 2.888414 CCCCTTGAGCCTTCGTTTAAAA 59.112 45.455 0.00 0.00 0.00 1.52
401 402 3.319689 CCCCTTGAGCCTTCGTTTAAAAA 59.680 43.478 0.00 0.00 0.00 1.94
501 502 0.676782 ATAAAGGAGCCGCACCACAC 60.677 55.000 9.69 0.00 0.00 3.82
676 699 6.228273 TGCTTCTCTTTTCACGTTCAATAG 57.772 37.500 0.00 0.00 0.00 1.73
683 709 8.390354 TCTCTTTTCACGTTCAATAGCATAATG 58.610 33.333 0.00 0.00 0.00 1.90
699 725 4.260907 GCATAATGTGCGTTGATGTCTGAT 60.261 41.667 0.00 0.00 45.23 2.90
738 765 0.603065 GGGAATATGCCCGGCAAATC 59.397 55.000 18.00 14.25 43.62 2.17
829 873 6.152154 AGACTCTAGTGCTCCTTTTCTTCTAC 59.848 42.308 0.00 0.00 0.00 2.59
837 881 7.444487 AGTGCTCCTTTTCTTCTACGTATTTTT 59.556 33.333 0.00 0.00 0.00 1.94
838 882 7.745155 GTGCTCCTTTTCTTCTACGTATTTTTC 59.255 37.037 0.00 0.00 0.00 2.29
840 884 8.504815 GCTCCTTTTCTTCTACGTATTTTTCTT 58.495 33.333 0.00 0.00 0.00 2.52
879 1017 4.839121 AGGTTAACTTTGAGACACACACA 58.161 39.130 5.42 0.00 0.00 3.72
883 1021 3.052455 ACTTTGAGACACACACACACA 57.948 42.857 0.00 0.00 0.00 3.72
884 1022 2.742053 ACTTTGAGACACACACACACAC 59.258 45.455 0.00 0.00 0.00 3.82
885 1023 2.464157 TTGAGACACACACACACACA 57.536 45.000 0.00 0.00 0.00 3.72
886 1024 1.720805 TGAGACACACACACACACAC 58.279 50.000 0.00 0.00 0.00 3.82
903 1041 1.893137 ACACGGTCTTGTAGCTGATCA 59.107 47.619 0.00 0.00 0.00 2.92
936 1074 3.736224 CCATCCACTGGGCTGGCT 61.736 66.667 0.00 0.00 43.15 4.75
938 1076 1.751927 CATCCACTGGGCTGGCTTC 60.752 63.158 0.00 0.00 0.00 3.86
939 1077 1.927527 ATCCACTGGGCTGGCTTCT 60.928 57.895 0.00 0.00 0.00 2.85
965 1143 5.312895 AGCAGTACACCAAATCAATACACA 58.687 37.500 0.00 0.00 0.00 3.72
1252 1430 1.499056 GTTGCCTACGACGTCGAGA 59.501 57.895 41.52 26.96 43.02 4.04
1379 1558 0.034670 AGAGCCAAGGTTGAGGATGC 60.035 55.000 0.00 0.00 0.00 3.91
1732 1917 1.005630 GCCCGGCAGCTCTATGTAG 60.006 63.158 3.91 0.00 0.00 2.74
1800 1985 2.573462 CCAAGTTCTGAGGAAGATGGGA 59.427 50.000 0.00 0.00 35.98 4.37
1938 2123 1.703411 TCCCACAAAGCAAGAAAGGG 58.297 50.000 0.00 0.00 36.15 3.95
1939 2124 0.681175 CCCACAAAGCAAGAAAGGGG 59.319 55.000 0.00 0.00 0.00 4.79
2020 2205 2.238144 AGAATGTAGCACCAGAGCACAT 59.762 45.455 0.00 0.00 37.63 3.21
2367 2561 3.429272 CCGTCACCCTAAACGCTGTTATA 60.429 47.826 0.00 0.00 37.56 0.98
2414 2611 6.326323 GGACTATCTTCTTCTTCTTCCTCCAT 59.674 42.308 0.00 0.00 0.00 3.41
2911 3108 3.636231 TGGTTGGTGCCTAGCGCT 61.636 61.111 17.26 17.26 39.23 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.743928 CAAGAGCAGGTGCCGGTC 60.744 66.667 1.90 0.00 43.38 4.79
3 4 3.123620 GAGCAAGAGCAGGTGCCG 61.124 66.667 0.00 0.00 45.49 5.69
4 5 1.744741 GAGAGCAAGAGCAGGTGCC 60.745 63.158 0.00 0.00 45.49 5.01
5 6 2.099431 CGAGAGCAAGAGCAGGTGC 61.099 63.158 0.00 0.00 45.49 5.01
6 7 1.447489 CCGAGAGCAAGAGCAGGTG 60.447 63.158 0.00 0.00 45.49 4.00
7 8 2.654079 CCCGAGAGCAAGAGCAGGT 61.654 63.158 0.00 0.00 45.49 4.00
8 9 2.186384 CCCGAGAGCAAGAGCAGG 59.814 66.667 0.00 0.00 45.49 4.85
9 10 1.447489 CACCCGAGAGCAAGAGCAG 60.447 63.158 0.00 0.00 45.49 4.24
10 11 1.881903 CTCACCCGAGAGCAAGAGCA 61.882 60.000 0.00 0.00 45.49 4.26
11 12 1.153667 CTCACCCGAGAGCAAGAGC 60.154 63.158 0.00 0.00 42.34 4.09
24 25 3.134127 GGTCATTGGGCGCTCACC 61.134 66.667 11.03 3.47 0.00 4.02
25 26 3.134127 GGGTCATTGGGCGCTCAC 61.134 66.667 11.03 0.00 0.00 3.51
26 27 4.776322 CGGGTCATTGGGCGCTCA 62.776 66.667 5.44 5.44 0.00 4.26
27 28 4.467084 TCGGGTCATTGGGCGCTC 62.467 66.667 7.64 2.47 0.00 5.03
28 29 4.778143 GTCGGGTCATTGGGCGCT 62.778 66.667 7.64 0.00 0.00 5.92
31 32 4.404098 ACCGTCGGGTCATTGGGC 62.404 66.667 17.28 0.00 46.01 5.36
32 33 2.435938 CACCGTCGGGTCATTGGG 60.436 66.667 17.28 0.00 46.01 4.12
33 34 3.124921 GCACCGTCGGGTCATTGG 61.125 66.667 17.28 0.00 46.01 3.16
34 35 3.487202 CGCACCGTCGGGTCATTG 61.487 66.667 17.28 5.29 46.01 2.82
35 36 4.752879 CCGCACCGTCGGGTCATT 62.753 66.667 17.28 0.00 46.01 2.57
50 51 4.933064 CTAGGCTCGAAGGCGCCG 62.933 72.222 23.20 9.85 46.58 6.46
51 52 4.593864 CCTAGGCTCGAAGGCGCC 62.594 72.222 21.89 21.89 46.58 6.53
55 56 1.791103 CTCTCGCCTAGGCTCGAAGG 61.791 65.000 30.55 14.56 39.32 3.46
56 57 1.652012 CTCTCGCCTAGGCTCGAAG 59.348 63.158 30.55 20.74 39.32 3.79
57 58 1.824329 CCTCTCGCCTAGGCTCGAA 60.824 63.158 30.55 12.75 39.32 3.71
58 59 2.058125 ATCCTCTCGCCTAGGCTCGA 62.058 60.000 30.55 23.28 39.32 4.04
59 60 1.175983 AATCCTCTCGCCTAGGCTCG 61.176 60.000 30.55 20.52 39.32 5.03
60 61 0.316841 CAATCCTCTCGCCTAGGCTC 59.683 60.000 30.55 4.11 39.32 4.70
61 62 1.118356 CCAATCCTCTCGCCTAGGCT 61.118 60.000 30.55 7.97 39.32 4.58
62 63 1.369321 CCAATCCTCTCGCCTAGGC 59.631 63.158 24.75 24.75 33.84 3.93
63 64 1.476007 CCCCAATCCTCTCGCCTAGG 61.476 65.000 3.67 3.67 35.26 3.02
64 65 0.760945 ACCCCAATCCTCTCGCCTAG 60.761 60.000 0.00 0.00 0.00 3.02
65 66 0.759436 GACCCCAATCCTCTCGCCTA 60.759 60.000 0.00 0.00 0.00 3.93
66 67 2.041265 ACCCCAATCCTCTCGCCT 59.959 61.111 0.00 0.00 0.00 5.52
67 68 1.627297 AAGACCCCAATCCTCTCGCC 61.627 60.000 0.00 0.00 0.00 5.54
68 69 0.179070 GAAGACCCCAATCCTCTCGC 60.179 60.000 0.00 0.00 0.00 5.03
69 70 1.490574 AGAAGACCCCAATCCTCTCG 58.509 55.000 0.00 0.00 0.00 4.04
70 71 2.159028 CGAAGAAGACCCCAATCCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
71 72 1.834263 CGAAGAAGACCCCAATCCTCT 59.166 52.381 0.00 0.00 0.00 3.69
72 73 1.134371 CCGAAGAAGACCCCAATCCTC 60.134 57.143 0.00 0.00 0.00 3.71
73 74 0.912486 CCGAAGAAGACCCCAATCCT 59.088 55.000 0.00 0.00 0.00 3.24
74 75 0.748367 GCCGAAGAAGACCCCAATCC 60.748 60.000 0.00 0.00 0.00 3.01
75 76 1.090052 CGCCGAAGAAGACCCCAATC 61.090 60.000 0.00 0.00 0.00 2.67
76 77 1.078426 CGCCGAAGAAGACCCCAAT 60.078 57.895 0.00 0.00 0.00 3.16
77 78 2.047213 AACGCCGAAGAAGACCCCAA 62.047 55.000 0.00 0.00 0.00 4.12
78 79 2.513259 AACGCCGAAGAAGACCCCA 61.513 57.895 0.00 0.00 0.00 4.96
79 80 2.033194 CAACGCCGAAGAAGACCCC 61.033 63.158 0.00 0.00 0.00 4.95
80 81 2.033194 CCAACGCCGAAGAAGACCC 61.033 63.158 0.00 0.00 0.00 4.46
81 82 0.601841 TTCCAACGCCGAAGAAGACC 60.602 55.000 0.00 0.00 0.00 3.85
82 83 0.790814 CTTCCAACGCCGAAGAAGAC 59.209 55.000 8.96 0.00 39.29 3.01
83 84 0.677288 TCTTCCAACGCCGAAGAAGA 59.323 50.000 11.94 11.94 42.07 2.87
84 85 0.790814 GTCTTCCAACGCCGAAGAAG 59.209 55.000 10.08 0.00 45.45 2.85
85 86 0.105224 TGTCTTCCAACGCCGAAGAA 59.895 50.000 10.08 0.00 45.45 2.52
86 87 0.319555 CTGTCTTCCAACGCCGAAGA 60.320 55.000 0.00 5.57 42.63 2.87
87 88 1.291877 CCTGTCTTCCAACGCCGAAG 61.292 60.000 0.00 1.36 38.47 3.79
88 89 1.301401 CCTGTCTTCCAACGCCGAA 60.301 57.895 0.00 0.00 0.00 4.30
89 90 2.035237 AACCTGTCTTCCAACGCCGA 62.035 55.000 0.00 0.00 0.00 5.54
90 91 1.164041 AAACCTGTCTTCCAACGCCG 61.164 55.000 0.00 0.00 0.00 6.46
91 92 0.591659 GAAACCTGTCTTCCAACGCC 59.408 55.000 0.00 0.00 0.00 5.68
92 93 0.234884 CGAAACCTGTCTTCCAACGC 59.765 55.000 0.00 0.00 0.00 4.84
93 94 1.260561 CACGAAACCTGTCTTCCAACG 59.739 52.381 0.00 0.00 0.00 4.10
94 95 2.287103 GTCACGAAACCTGTCTTCCAAC 59.713 50.000 0.00 0.00 0.00 3.77
95 96 2.557317 GTCACGAAACCTGTCTTCCAA 58.443 47.619 0.00 0.00 0.00 3.53
96 97 1.202604 GGTCACGAAACCTGTCTTCCA 60.203 52.381 0.00 0.00 36.32 3.53
97 98 1.509703 GGTCACGAAACCTGTCTTCC 58.490 55.000 0.00 0.00 36.32 3.46
98 99 1.509703 GGGTCACGAAACCTGTCTTC 58.490 55.000 10.10 0.00 39.42 2.87
99 100 0.108019 GGGGTCACGAAACCTGTCTT 59.892 55.000 10.10 0.00 39.42 3.01
100 101 1.052124 TGGGGTCACGAAACCTGTCT 61.052 55.000 10.10 0.00 39.42 3.41
101 102 0.179040 TTGGGGTCACGAAACCTGTC 60.179 55.000 10.10 3.12 39.42 3.51
102 103 0.476771 ATTGGGGTCACGAAACCTGT 59.523 50.000 10.10 0.00 39.42 4.00
103 104 1.165270 GATTGGGGTCACGAAACCTG 58.835 55.000 10.10 0.00 39.42 4.00
104 105 0.037734 GGATTGGGGTCACGAAACCT 59.962 55.000 10.10 0.00 39.42 3.50
105 106 0.963856 GGGATTGGGGTCACGAAACC 60.964 60.000 0.00 0.00 38.69 3.27
106 107 0.250989 TGGGATTGGGGTCACGAAAC 60.251 55.000 0.00 0.00 0.00 2.78
107 108 0.250989 GTGGGATTGGGGTCACGAAA 60.251 55.000 0.00 0.00 0.00 3.46
108 109 1.377229 GTGGGATTGGGGTCACGAA 59.623 57.895 0.00 0.00 0.00 3.85
109 110 3.074281 GTGGGATTGGGGTCACGA 58.926 61.111 0.00 0.00 0.00 4.35
110 111 2.435938 CGTGGGATTGGGGTCACG 60.436 66.667 0.00 0.00 44.98 4.35
111 112 0.463833 GATCGTGGGATTGGGGTCAC 60.464 60.000 0.00 0.00 31.51 3.67
112 113 1.632018 GGATCGTGGGATTGGGGTCA 61.632 60.000 0.00 0.00 31.51 4.02
113 114 1.148498 GGATCGTGGGATTGGGGTC 59.852 63.158 0.00 0.00 31.51 4.46
114 115 2.742116 CGGATCGTGGGATTGGGGT 61.742 63.158 0.00 0.00 31.51 4.95
115 116 2.111043 CGGATCGTGGGATTGGGG 59.889 66.667 0.00 0.00 31.51 4.96
116 117 2.111043 CCGGATCGTGGGATTGGG 59.889 66.667 0.00 0.00 31.51 4.12
117 118 2.591715 GCCGGATCGTGGGATTGG 60.592 66.667 5.05 0.00 33.76 3.16
118 119 1.889105 CAGCCGGATCGTGGGATTG 60.889 63.158 5.05 0.00 31.51 2.67
119 120 2.505982 CAGCCGGATCGTGGGATT 59.494 61.111 5.05 0.00 31.51 3.01
120 121 4.241555 GCAGCCGGATCGTGGGAT 62.242 66.667 5.05 0.00 34.96 3.85
141 142 0.316204 CCAAAGGCCTGCAAGAACTG 59.684 55.000 5.69 0.00 34.07 3.16
142 143 1.466851 GCCAAAGGCCTGCAAGAACT 61.467 55.000 5.69 0.00 44.06 3.01
143 144 1.005748 GCCAAAGGCCTGCAAGAAC 60.006 57.895 5.69 0.00 44.06 3.01
144 145 3.458653 GCCAAAGGCCTGCAAGAA 58.541 55.556 5.69 0.00 44.06 2.52
154 155 1.815003 GTGTCAAGGATCAGCCAAAGG 59.185 52.381 0.00 0.00 40.02 3.11
155 156 2.787994 AGTGTCAAGGATCAGCCAAAG 58.212 47.619 0.00 0.00 40.02 2.77
156 157 2.957402 AGTGTCAAGGATCAGCCAAA 57.043 45.000 0.00 0.00 40.02 3.28
157 158 2.906389 AGTAGTGTCAAGGATCAGCCAA 59.094 45.455 0.00 0.00 40.02 4.52
158 159 2.497675 GAGTAGTGTCAAGGATCAGCCA 59.502 50.000 0.00 0.00 40.02 4.75
159 160 2.763448 AGAGTAGTGTCAAGGATCAGCC 59.237 50.000 0.00 0.00 0.00 4.85
160 161 3.779759 CAGAGTAGTGTCAAGGATCAGC 58.220 50.000 0.00 0.00 0.00 4.26
161 162 3.446873 AGCAGAGTAGTGTCAAGGATCAG 59.553 47.826 0.00 0.00 0.00 2.90
162 163 3.435275 AGCAGAGTAGTGTCAAGGATCA 58.565 45.455 0.00 0.00 0.00 2.92
163 164 3.181480 GGAGCAGAGTAGTGTCAAGGATC 60.181 52.174 0.00 0.00 0.00 3.36
164 165 2.763448 GGAGCAGAGTAGTGTCAAGGAT 59.237 50.000 0.00 0.00 0.00 3.24
165 166 2.171840 GGAGCAGAGTAGTGTCAAGGA 58.828 52.381 0.00 0.00 0.00 3.36
166 167 1.205893 GGGAGCAGAGTAGTGTCAAGG 59.794 57.143 0.00 0.00 0.00 3.61
167 168 2.175202 AGGGAGCAGAGTAGTGTCAAG 58.825 52.381 0.00 0.00 0.00 3.02
168 169 2.300152 CAAGGGAGCAGAGTAGTGTCAA 59.700 50.000 0.00 0.00 0.00 3.18
169 170 1.895798 CAAGGGAGCAGAGTAGTGTCA 59.104 52.381 0.00 0.00 0.00 3.58
170 171 1.404851 GCAAGGGAGCAGAGTAGTGTC 60.405 57.143 0.00 0.00 0.00 3.67
171 172 0.610687 GCAAGGGAGCAGAGTAGTGT 59.389 55.000 0.00 0.00 0.00 3.55
172 173 0.901124 AGCAAGGGAGCAGAGTAGTG 59.099 55.000 0.00 0.00 36.85 2.74
173 174 1.190643 GAGCAAGGGAGCAGAGTAGT 58.809 55.000 0.00 0.00 36.85 2.73
174 175 1.484038 AGAGCAAGGGAGCAGAGTAG 58.516 55.000 0.00 0.00 36.85 2.57
175 176 1.552337 CAAGAGCAAGGGAGCAGAGTA 59.448 52.381 0.00 0.00 36.85 2.59
176 177 0.324285 CAAGAGCAAGGGAGCAGAGT 59.676 55.000 0.00 0.00 36.85 3.24
177 178 0.392729 CCAAGAGCAAGGGAGCAGAG 60.393 60.000 0.00 0.00 36.85 3.35
178 179 1.130054 ACCAAGAGCAAGGGAGCAGA 61.130 55.000 0.00 0.00 36.85 4.26
179 180 0.959372 CACCAAGAGCAAGGGAGCAG 60.959 60.000 0.00 0.00 36.85 4.24
180 181 1.073722 CACCAAGAGCAAGGGAGCA 59.926 57.895 0.00 0.00 36.85 4.26
181 182 2.338785 GCACCAAGAGCAAGGGAGC 61.339 63.158 0.00 0.00 0.00 4.70
182 183 1.676967 GGCACCAAGAGCAAGGGAG 60.677 63.158 0.00 0.00 0.00 4.30
183 184 2.436109 GGCACCAAGAGCAAGGGA 59.564 61.111 0.00 0.00 0.00 4.20
184 185 2.826777 ATCGGCACCAAGAGCAAGGG 62.827 60.000 0.00 0.00 0.00 3.95
185 186 1.377725 ATCGGCACCAAGAGCAAGG 60.378 57.895 0.00 0.00 0.00 3.61
186 187 0.957395 ACATCGGCACCAAGAGCAAG 60.957 55.000 0.00 0.00 0.00 4.01
187 188 1.073025 ACATCGGCACCAAGAGCAA 59.927 52.632 0.00 0.00 0.00 3.91
188 189 1.672030 CACATCGGCACCAAGAGCA 60.672 57.895 0.00 0.00 0.00 4.26
189 190 3.044059 GCACATCGGCACCAAGAGC 62.044 63.158 0.00 0.00 0.00 4.09
190 191 1.642037 CTGCACATCGGCACCAAGAG 61.642 60.000 0.00 0.00 39.25 2.85
191 192 1.672030 CTGCACATCGGCACCAAGA 60.672 57.895 0.00 0.00 39.25 3.02
192 193 2.872557 CTGCACATCGGCACCAAG 59.127 61.111 0.00 0.00 39.25 3.61
193 194 3.364441 GCTGCACATCGGCACCAA 61.364 61.111 0.00 0.00 46.35 3.67
200 201 3.869272 GAAGCCCGCTGCACATCG 61.869 66.667 0.00 0.00 44.83 3.84
201 202 3.869272 CGAAGCCCGCTGCACATC 61.869 66.667 0.00 0.00 44.83 3.06
202 203 4.393155 TCGAAGCCCGCTGCACAT 62.393 61.111 0.00 0.00 44.83 3.21
205 206 2.514510 TAATGTCGAAGCCCGCTGCA 62.515 55.000 0.00 0.00 44.83 4.41
206 207 1.813753 TAATGTCGAAGCCCGCTGC 60.814 57.895 0.00 0.00 41.71 5.25
207 208 0.460284 AGTAATGTCGAAGCCCGCTG 60.460 55.000 0.00 0.00 38.37 5.18
208 209 0.249398 AAGTAATGTCGAAGCCCGCT 59.751 50.000 0.00 0.00 38.37 5.52
209 210 0.373716 CAAGTAATGTCGAAGCCCGC 59.626 55.000 0.00 0.00 38.37 6.13
210 211 0.373716 GCAAGTAATGTCGAAGCCCG 59.626 55.000 0.00 0.00 40.25 6.13
211 212 1.398390 CTGCAAGTAATGTCGAAGCCC 59.602 52.381 0.00 0.00 0.00 5.19
212 213 1.398390 CCTGCAAGTAATGTCGAAGCC 59.602 52.381 0.00 0.00 0.00 4.35
213 214 2.076863 ACCTGCAAGTAATGTCGAAGC 58.923 47.619 0.00 0.00 0.00 3.86
214 215 3.589988 AGACCTGCAAGTAATGTCGAAG 58.410 45.455 0.00 0.00 0.00 3.79
215 216 3.678056 AGACCTGCAAGTAATGTCGAA 57.322 42.857 0.00 0.00 0.00 3.71
216 217 3.678056 AAGACCTGCAAGTAATGTCGA 57.322 42.857 0.00 0.00 0.00 4.20
217 218 3.745975 TGAAAGACCTGCAAGTAATGTCG 59.254 43.478 0.00 0.00 0.00 4.35
218 219 4.154918 CCTGAAAGACCTGCAAGTAATGTC 59.845 45.833 0.00 0.00 34.07 3.06
219 220 4.074970 CCTGAAAGACCTGCAAGTAATGT 58.925 43.478 0.00 0.00 34.07 2.71
220 221 4.074970 ACCTGAAAGACCTGCAAGTAATG 58.925 43.478 0.00 0.00 34.07 1.90
221 222 4.074970 CACCTGAAAGACCTGCAAGTAAT 58.925 43.478 0.00 0.00 34.07 1.89
222 223 3.118038 ACACCTGAAAGACCTGCAAGTAA 60.118 43.478 0.00 0.00 34.07 2.24
223 224 2.438021 ACACCTGAAAGACCTGCAAGTA 59.562 45.455 0.00 0.00 34.07 2.24
224 225 1.212935 ACACCTGAAAGACCTGCAAGT 59.787 47.619 0.00 0.00 34.07 3.16
225 226 1.972872 ACACCTGAAAGACCTGCAAG 58.027 50.000 0.00 0.00 34.07 4.01
226 227 2.438021 AGTACACCTGAAAGACCTGCAA 59.562 45.455 0.00 0.00 34.07 4.08
227 228 2.047061 AGTACACCTGAAAGACCTGCA 58.953 47.619 0.00 0.00 34.07 4.41
228 229 2.841442 AGTACACCTGAAAGACCTGC 57.159 50.000 0.00 0.00 34.07 4.85
229 230 4.608948 AGAAGTACACCTGAAAGACCTG 57.391 45.455 0.00 0.00 34.07 4.00
230 231 5.337652 GCATAGAAGTACACCTGAAAGACCT 60.338 44.000 0.00 0.00 34.07 3.85
231 232 4.870991 GCATAGAAGTACACCTGAAAGACC 59.129 45.833 0.00 0.00 34.07 3.85
232 233 5.479306 TGCATAGAAGTACACCTGAAAGAC 58.521 41.667 0.00 0.00 34.07 3.01
233 234 5.738619 TGCATAGAAGTACACCTGAAAGA 57.261 39.130 0.00 0.00 34.07 2.52
234 235 5.220739 GCATGCATAGAAGTACACCTGAAAG 60.221 44.000 14.21 0.00 0.00 2.62
235 236 4.635765 GCATGCATAGAAGTACACCTGAAA 59.364 41.667 14.21 0.00 0.00 2.69
236 237 4.191544 GCATGCATAGAAGTACACCTGAA 58.808 43.478 14.21 0.00 0.00 3.02
237 238 3.197549 TGCATGCATAGAAGTACACCTGA 59.802 43.478 18.46 0.00 0.00 3.86
238 239 3.534554 TGCATGCATAGAAGTACACCTG 58.465 45.455 18.46 0.00 0.00 4.00
239 240 3.198635 ACTGCATGCATAGAAGTACACCT 59.801 43.478 22.97 0.00 0.00 4.00
240 241 3.535561 ACTGCATGCATAGAAGTACACC 58.464 45.455 22.97 0.00 0.00 4.16
241 242 5.233050 CACTACTGCATGCATAGAAGTACAC 59.767 44.000 28.56 0.00 0.00 2.90
242 243 5.105351 ACACTACTGCATGCATAGAAGTACA 60.105 40.000 28.56 10.22 0.00 2.90
243 244 5.233050 CACACTACTGCATGCATAGAAGTAC 59.767 44.000 28.56 0.00 0.00 2.73
244 245 5.351458 CACACTACTGCATGCATAGAAGTA 58.649 41.667 28.56 22.15 0.00 2.24
245 246 4.186926 CACACTACTGCATGCATAGAAGT 58.813 43.478 28.56 22.21 0.00 3.01
246 247 3.002042 GCACACTACTGCATGCATAGAAG 59.998 47.826 28.56 23.52 38.00 2.85
247 248 2.938451 GCACACTACTGCATGCATAGAA 59.062 45.455 28.56 14.29 38.00 2.10
248 249 2.554142 GCACACTACTGCATGCATAGA 58.446 47.619 28.56 16.10 38.00 1.98
249 250 1.259770 CGCACACTACTGCATGCATAG 59.740 52.381 22.97 23.58 37.97 2.23
250 251 1.289276 CGCACACTACTGCATGCATA 58.711 50.000 22.97 14.22 37.97 3.14
251 252 0.674581 ACGCACACTACTGCATGCAT 60.675 50.000 22.97 13.83 37.97 3.96
252 253 0.884259 AACGCACACTACTGCATGCA 60.884 50.000 21.29 21.29 37.97 3.96
253 254 0.453282 CAACGCACACTACTGCATGC 60.453 55.000 11.82 11.82 36.94 4.06
254 255 0.453282 GCAACGCACACTACTGCATG 60.453 55.000 0.00 0.00 36.94 4.06
255 256 1.868997 GCAACGCACACTACTGCAT 59.131 52.632 0.00 0.00 36.94 3.96
256 257 2.594048 CGCAACGCACACTACTGCA 61.594 57.895 0.00 0.00 36.94 4.41
257 258 2.101209 AACGCAACGCACACTACTGC 62.101 55.000 0.00 0.00 0.00 4.40
258 259 0.383002 CAACGCAACGCACACTACTG 60.383 55.000 0.00 0.00 0.00 2.74
259 260 0.808453 ACAACGCAACGCACACTACT 60.808 50.000 0.00 0.00 0.00 2.57
260 261 0.854062 TACAACGCAACGCACACTAC 59.146 50.000 0.00 0.00 0.00 2.73
261 262 1.568606 TTACAACGCAACGCACACTA 58.431 45.000 0.00 0.00 0.00 2.74
262 263 0.727970 TTTACAACGCAACGCACACT 59.272 45.000 0.00 0.00 0.00 3.55
263 264 1.749153 ATTTACAACGCAACGCACAC 58.251 45.000 0.00 0.00 0.00 3.82
264 265 2.112522 CAATTTACAACGCAACGCACA 58.887 42.857 0.00 0.00 0.00 4.57
265 266 1.137019 GCAATTTACAACGCAACGCAC 60.137 47.619 0.00 0.00 0.00 5.34
266 267 1.124462 GCAATTTACAACGCAACGCA 58.876 45.000 0.00 0.00 0.00 5.24
267 268 1.382088 GAGCAATTTACAACGCAACGC 59.618 47.619 0.00 0.00 0.00 4.84
268 269 2.651703 CAGAGCAATTTACAACGCAACG 59.348 45.455 0.00 0.00 0.00 4.10
269 270 3.628017 ACAGAGCAATTTACAACGCAAC 58.372 40.909 0.00 0.00 0.00 4.17
270 271 3.313803 TGACAGAGCAATTTACAACGCAA 59.686 39.130 0.00 0.00 0.00 4.85
271 272 2.875317 TGACAGAGCAATTTACAACGCA 59.125 40.909 0.00 0.00 0.00 5.24
272 273 3.482786 CTGACAGAGCAATTTACAACGC 58.517 45.455 0.00 0.00 0.00 4.84
285 286 3.030291 AGATACAAGGGAGCTGACAGAG 58.970 50.000 6.65 0.00 0.00 3.35
286 287 3.107402 AGATACAAGGGAGCTGACAGA 57.893 47.619 6.65 0.00 0.00 3.41
287 288 3.902881 AAGATACAAGGGAGCTGACAG 57.097 47.619 0.00 0.00 0.00 3.51
288 289 3.368427 CGAAAGATACAAGGGAGCTGACA 60.368 47.826 0.00 0.00 0.00 3.58
289 290 3.190874 CGAAAGATACAAGGGAGCTGAC 58.809 50.000 0.00 0.00 0.00 3.51
290 291 2.168521 CCGAAAGATACAAGGGAGCTGA 59.831 50.000 0.00 0.00 0.00 4.26
291 292 2.093447 ACCGAAAGATACAAGGGAGCTG 60.093 50.000 0.00 0.00 0.00 4.24
292 293 2.168728 GACCGAAAGATACAAGGGAGCT 59.831 50.000 0.00 0.00 0.00 4.09
293 294 2.552031 GACCGAAAGATACAAGGGAGC 58.448 52.381 0.00 0.00 0.00 4.70
294 295 2.810650 CGACCGAAAGATACAAGGGAG 58.189 52.381 0.00 0.00 0.00 4.30
295 296 1.134907 GCGACCGAAAGATACAAGGGA 60.135 52.381 0.00 0.00 0.00 4.20
296 297 1.134788 AGCGACCGAAAGATACAAGGG 60.135 52.381 0.00 0.00 0.00 3.95
297 298 2.159226 AGAGCGACCGAAAGATACAAGG 60.159 50.000 0.00 0.00 0.00 3.61
298 299 3.152261 AGAGCGACCGAAAGATACAAG 57.848 47.619 0.00 0.00 0.00 3.16
299 300 3.250744 CAAGAGCGACCGAAAGATACAA 58.749 45.455 0.00 0.00 0.00 2.41
300 301 2.876091 CAAGAGCGACCGAAAGATACA 58.124 47.619 0.00 0.00 0.00 2.29
301 302 1.588861 GCAAGAGCGACCGAAAGATAC 59.411 52.381 0.00 0.00 0.00 2.24
302 303 1.922570 GCAAGAGCGACCGAAAGATA 58.077 50.000 0.00 0.00 0.00 1.98
303 304 2.755929 GCAAGAGCGACCGAAAGAT 58.244 52.632 0.00 0.00 0.00 2.40
304 305 4.261888 GCAAGAGCGACCGAAAGA 57.738 55.556 0.00 0.00 0.00 2.52
314 315 1.905354 AAGGCCACCAAGCAAGAGC 60.905 57.895 5.01 0.00 42.56 4.09
315 316 0.825010 ACAAGGCCACCAAGCAAGAG 60.825 55.000 5.01 0.00 0.00 2.85
316 317 1.108727 CACAAGGCCACCAAGCAAGA 61.109 55.000 5.01 0.00 0.00 3.02
317 318 1.364901 CACAAGGCCACCAAGCAAG 59.635 57.895 5.01 0.00 0.00 4.01
318 319 0.106469 TACACAAGGCCACCAAGCAA 60.106 50.000 5.01 0.00 0.00 3.91
319 320 0.106469 TTACACAAGGCCACCAAGCA 60.106 50.000 5.01 0.00 0.00 3.91
320 321 1.202348 GATTACACAAGGCCACCAAGC 59.798 52.381 5.01 0.00 0.00 4.01
321 322 2.795329 AGATTACACAAGGCCACCAAG 58.205 47.619 5.01 0.00 0.00 3.61
322 323 2.890311 CAAGATTACACAAGGCCACCAA 59.110 45.455 5.01 0.00 0.00 3.67
323 324 2.513753 CAAGATTACACAAGGCCACCA 58.486 47.619 5.01 0.00 0.00 4.17
324 325 1.818674 CCAAGATTACACAAGGCCACC 59.181 52.381 5.01 0.00 0.00 4.61
325 326 1.202348 GCCAAGATTACACAAGGCCAC 59.798 52.381 5.01 0.00 36.17 5.01
326 327 1.544724 GCCAAGATTACACAAGGCCA 58.455 50.000 5.01 0.00 36.17 5.36
328 329 0.451783 CGGCCAAGATTACACAAGGC 59.548 55.000 2.24 0.00 41.29 4.35
329 330 1.094785 CCGGCCAAGATTACACAAGG 58.905 55.000 2.24 0.00 0.00 3.61
330 331 1.821216 ACCGGCCAAGATTACACAAG 58.179 50.000 0.00 0.00 0.00 3.16
331 332 1.883275 CAACCGGCCAAGATTACACAA 59.117 47.619 0.00 0.00 0.00 3.33
332 333 1.072489 TCAACCGGCCAAGATTACACA 59.928 47.619 0.00 0.00 0.00 3.72
333 334 1.816074 TCAACCGGCCAAGATTACAC 58.184 50.000 0.00 0.00 0.00 2.90
334 335 2.364632 CATCAACCGGCCAAGATTACA 58.635 47.619 0.00 0.00 0.00 2.41
335 336 1.676006 CCATCAACCGGCCAAGATTAC 59.324 52.381 0.00 0.00 0.00 1.89
336 337 2.021723 GCCATCAACCGGCCAAGATTA 61.022 52.381 0.00 0.00 44.22 1.75
337 338 1.322538 GCCATCAACCGGCCAAGATT 61.323 55.000 0.00 0.00 44.22 2.40
338 339 1.754234 GCCATCAACCGGCCAAGAT 60.754 57.895 0.00 0.00 44.22 2.40
339 340 2.361104 GCCATCAACCGGCCAAGA 60.361 61.111 0.00 0.00 44.22 3.02
345 346 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
346 347 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
347 348 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
357 358 5.010617 GGGAGCCTGACTTTGAATTAACAAA 59.989 40.000 0.00 0.00 37.98 2.83
358 359 4.522789 GGGAGCCTGACTTTGAATTAACAA 59.477 41.667 0.00 0.00 0.00 2.83
359 360 4.079253 GGGAGCCTGACTTTGAATTAACA 58.921 43.478 0.00 0.00 0.00 2.41
360 361 3.444034 GGGGAGCCTGACTTTGAATTAAC 59.556 47.826 0.00 0.00 0.00 2.01
361 362 3.333680 AGGGGAGCCTGACTTTGAATTAA 59.666 43.478 0.00 0.00 0.00 1.40
362 363 2.919602 AGGGGAGCCTGACTTTGAATTA 59.080 45.455 0.00 0.00 0.00 1.40
363 364 1.713078 AGGGGAGCCTGACTTTGAATT 59.287 47.619 0.00 0.00 0.00 2.17
364 365 1.376649 AGGGGAGCCTGACTTTGAAT 58.623 50.000 0.00 0.00 0.00 2.57
365 366 1.149101 AAGGGGAGCCTGACTTTGAA 58.851 50.000 0.00 0.00 0.00 2.69
366 367 0.401738 CAAGGGGAGCCTGACTTTGA 59.598 55.000 0.00 0.00 0.00 2.69
367 368 0.401738 TCAAGGGGAGCCTGACTTTG 59.598 55.000 0.00 0.00 0.00 2.77
368 369 0.695347 CTCAAGGGGAGCCTGACTTT 59.305 55.000 0.00 0.00 36.69 2.66
369 370 2.381445 CTCAAGGGGAGCCTGACTT 58.619 57.895 0.00 0.00 36.69 3.01
370 371 4.143740 CTCAAGGGGAGCCTGACT 57.856 61.111 0.00 0.00 36.69 3.41
377 378 0.036875 AAACGAAGGCTCAAGGGGAG 59.963 55.000 0.00 0.00 46.93 4.30
378 379 1.354101 TAAACGAAGGCTCAAGGGGA 58.646 50.000 0.00 0.00 0.00 4.81
379 380 2.194201 TTAAACGAAGGCTCAAGGGG 57.806 50.000 0.00 0.00 0.00 4.79
380 381 4.577834 TTTTTAAACGAAGGCTCAAGGG 57.422 40.909 0.00 0.00 0.00 3.95
404 405 3.615709 GCAGGCTGGCCGGTTTTT 61.616 61.111 17.64 0.00 41.95 1.94
405 406 4.912395 TGCAGGCTGGCCGGTTTT 62.912 61.111 17.64 0.00 41.95 2.43
501 502 2.301346 AGAAAGCAACCCTTGTGTCTG 58.699 47.619 0.00 0.00 33.01 3.51
590 599 0.861185 CATGTGCTACGCGTGCATAT 59.139 50.000 29.33 28.08 41.68 1.78
591 600 2.296658 CATGTGCTACGCGTGCATA 58.703 52.632 29.33 27.39 42.69 3.14
600 609 3.797039 TCTAGGAACATGCATGTGCTAC 58.203 45.455 32.06 19.71 41.61 3.58
652 675 5.695851 ATTGAACGTGAAAAGAGAAGCAT 57.304 34.783 0.00 0.00 0.00 3.79
658 681 8.177663 ACATTATGCTATTGAACGTGAAAAGAG 58.822 33.333 0.00 0.00 0.00 2.85
683 709 2.545526 CCCATATCAGACATCAACGCAC 59.454 50.000 0.00 0.00 0.00 5.34
699 725 4.791334 TCCCTTCCAGAAACATAACCCATA 59.209 41.667 0.00 0.00 0.00 2.74
738 765 0.247736 AGGTTAAGCTGTGCTCCTCG 59.752 55.000 6.33 0.00 38.25 4.63
879 1017 0.750850 AGCTACAAGACCGTGTGTGT 59.249 50.000 0.00 0.00 32.75 3.72
883 1021 1.893137 TGATCAGCTACAAGACCGTGT 59.107 47.619 0.00 0.00 35.43 4.49
884 1022 2.654749 TGATCAGCTACAAGACCGTG 57.345 50.000 0.00 0.00 0.00 4.94
885 1023 2.675317 GCTTGATCAGCTACAAGACCGT 60.675 50.000 22.72 0.00 46.27 4.83
886 1024 1.929836 GCTTGATCAGCTACAAGACCG 59.070 52.381 22.72 6.10 46.27 4.79
903 1041 3.846588 TGGATGGTTTAGAAGAGGAGCTT 59.153 43.478 0.00 0.00 40.25 3.74
935 1073 5.724328 TGATTTGGTGTACTGCTAGAGAAG 58.276 41.667 0.00 0.00 0.00 2.85
936 1074 5.738619 TGATTTGGTGTACTGCTAGAGAA 57.261 39.130 0.00 0.00 0.00 2.87
938 1076 7.010552 GTGTATTGATTTGGTGTACTGCTAGAG 59.989 40.741 0.00 0.00 0.00 2.43
939 1077 6.816640 GTGTATTGATTTGGTGTACTGCTAGA 59.183 38.462 0.00 0.00 0.00 2.43
956 1134 3.500299 CGGGATTTGTGTGTGTGTATTGA 59.500 43.478 0.00 0.00 0.00 2.57
965 1143 1.340017 CCTGGATCGGGATTTGTGTGT 60.340 52.381 0.00 0.00 29.82 3.72
1068 1246 4.287781 TTTGCGACGGCCGACTCA 62.288 61.111 35.90 25.21 41.76 3.41
1252 1430 1.674057 CGAAGTCCTGGAGGCAGTT 59.326 57.895 0.00 0.00 34.44 3.16
1379 1558 2.045536 GCAGGTTCCTCTGGCTGG 60.046 66.667 0.00 0.00 35.43 4.85
1610 1795 4.116238 GAGATCTTCGTAGGCTCTTTTGG 58.884 47.826 0.00 0.00 0.00 3.28
1732 1917 2.292845 GCTTGGCCTGCTGAAGATAATC 59.707 50.000 3.32 0.00 0.00 1.75
1800 1985 4.789807 CCAAATCCTCCTCACTCATCATT 58.210 43.478 0.00 0.00 0.00 2.57
1938 2123 1.557651 GACACTACGATTCGGCTTCC 58.442 55.000 11.29 0.00 0.00 3.46
1939 2124 1.189403 CGACACTACGATTCGGCTTC 58.811 55.000 11.29 0.00 35.09 3.86
2020 2205 2.950975 TGAAGATCAGCAAACAACTGCA 59.049 40.909 0.00 0.00 45.18 4.41
2367 2561 0.917333 ACCGGTGGGTCCCATATGTT 60.917 55.000 15.49 0.00 46.01 2.71
2414 2611 7.523293 TGTTGAAATGCCAAATAGAGAGAAA 57.477 32.000 0.00 0.00 0.00 2.52
2549 2746 4.379243 CAGGCCGCTGTCGAGGTT 62.379 66.667 0.00 0.00 38.10 3.50
2911 3108 4.717629 CAAGACGAGCGGGCGACA 62.718 66.667 0.00 0.00 34.83 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.