Multiple sequence alignment - TraesCS7D01G266300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G266300 | chr7D | 100.000 | 6075 | 0 | 0 | 1001 | 7075 | 249368711 | 249374785 | 0.000000e+00 | 11219 |
1 | TraesCS7D01G266300 | chr7D | 100.000 | 595 | 0 | 0 | 1 | 595 | 249367711 | 249368305 | 0.000000e+00 | 1099 |
2 | TraesCS7D01G266300 | chr7D | 86.217 | 341 | 36 | 8 | 3000 | 3337 | 249370328 | 249370660 | 6.750000e-95 | 359 |
3 | TraesCS7D01G266300 | chr7D | 86.217 | 341 | 36 | 8 | 2618 | 2950 | 249370710 | 249371047 | 6.750000e-95 | 359 |
4 | TraesCS7D01G266300 | chr7D | 89.308 | 159 | 13 | 4 | 6614 | 6770 | 140786367 | 140786211 | 5.600000e-46 | 196 |
5 | TraesCS7D01G266300 | chr7D | 89.172 | 157 | 11 | 3 | 6615 | 6767 | 135151732 | 135151886 | 2.600000e-44 | 191 |
6 | TraesCS7D01G266300 | chr7A | 95.200 | 3375 | 72 | 12 | 1001 | 4319 | 271799864 | 271796524 | 0.000000e+00 | 5252 |
7 | TraesCS7D01G266300 | chr7A | 95.307 | 2088 | 45 | 17 | 4317 | 6374 | 271796497 | 271794433 | 0.000000e+00 | 3264 |
8 | TraesCS7D01G266300 | chr7A | 91.422 | 408 | 19 | 9 | 202 | 595 | 271800398 | 271799993 | 4.830000e-151 | 545 |
9 | TraesCS7D01G266300 | chr7A | 86.047 | 344 | 38 | 7 | 2999 | 3337 | 271798204 | 271797866 | 1.880000e-95 | 361 |
10 | TraesCS7D01G266300 | chr7A | 85.561 | 187 | 19 | 5 | 6774 | 6960 | 271794061 | 271793883 | 9.370000e-44 | 189 |
11 | TraesCS7D01G266300 | chr7A | 89.011 | 91 | 0 | 1 | 6995 | 7075 | 271793884 | 271793794 | 3.490000e-18 | 104 |
12 | TraesCS7D01G266300 | chr7B | 93.718 | 1958 | 79 | 13 | 4451 | 6377 | 226330401 | 226332345 | 0.000000e+00 | 2894 |
13 | TraesCS7D01G266300 | chr7B | 91.232 | 1015 | 39 | 11 | 3314 | 4319 | 226328547 | 226329520 | 0.000000e+00 | 1336 |
14 | TraesCS7D01G266300 | chr7B | 88.089 | 1125 | 78 | 20 | 1001 | 2106 | 226326810 | 226327897 | 0.000000e+00 | 1284 |
15 | TraesCS7D01G266300 | chr7B | 94.337 | 671 | 29 | 6 | 2618 | 3281 | 226327884 | 226328552 | 0.000000e+00 | 1020 |
16 | TraesCS7D01G266300 | chr7B | 92.066 | 605 | 23 | 8 | 1 | 590 | 226326094 | 226326688 | 0.000000e+00 | 828 |
17 | TraesCS7D01G266300 | chr7B | 84.039 | 307 | 21 | 12 | 6774 | 7075 | 226332721 | 226333004 | 3.250000e-68 | 270 |
18 | TraesCS7D01G266300 | chr7B | 89.677 | 155 | 11 | 3 | 6615 | 6765 | 463039140 | 463038987 | 7.240000e-45 | 193 |
19 | TraesCS7D01G266300 | chr3B | 91.075 | 493 | 43 | 1 | 2125 | 2616 | 335110355 | 335110847 | 0.000000e+00 | 665 |
20 | TraesCS7D01G266300 | chr4A | 88.330 | 497 | 57 | 1 | 2125 | 2620 | 352271993 | 352272489 | 4.720000e-166 | 595 |
21 | TraesCS7D01G266300 | chr4A | 88.438 | 493 | 56 | 1 | 2128 | 2619 | 255311413 | 255310921 | 1.700000e-165 | 593 |
22 | TraesCS7D01G266300 | chr4A | 85.325 | 477 | 65 | 3 | 2121 | 2592 | 352512571 | 352513047 | 8.250000e-134 | 488 |
23 | TraesCS7D01G266300 | chr3D | 88.330 | 497 | 56 | 2 | 2124 | 2619 | 104804505 | 104804010 | 4.720000e-166 | 595 |
24 | TraesCS7D01G266300 | chr3D | 86.869 | 198 | 25 | 1 | 1 | 197 | 431454070 | 431453873 | 3.320000e-53 | 220 |
25 | TraesCS7D01G266300 | chr2D | 91.467 | 375 | 29 | 2 | 2246 | 2619 | 463876198 | 463875826 | 4.890000e-141 | 512 |
26 | TraesCS7D01G266300 | chr2D | 88.384 | 198 | 22 | 1 | 1 | 197 | 245594230 | 245594033 | 3.300000e-58 | 237 |
27 | TraesCS7D01G266300 | chr2D | 87.374 | 198 | 24 | 1 | 1 | 197 | 352185690 | 352185493 | 7.140000e-55 | 226 |
28 | TraesCS7D01G266300 | chr2D | 87.374 | 198 | 23 | 2 | 1 | 197 | 376828047 | 376828243 | 7.140000e-55 | 226 |
29 | TraesCS7D01G266300 | chr4D | 85.535 | 477 | 64 | 5 | 2121 | 2592 | 208420868 | 208421344 | 1.770000e-135 | 494 |
30 | TraesCS7D01G266300 | chr4D | 87.310 | 197 | 24 | 1 | 2 | 197 | 473420144 | 473419948 | 2.570000e-54 | 224 |
31 | TraesCS7D01G266300 | chr4B | 85.000 | 480 | 65 | 7 | 2121 | 2595 | 240211054 | 240211531 | 1.380000e-131 | 481 |
32 | TraesCS7D01G266300 | chr2B | 88.000 | 200 | 19 | 3 | 1 | 197 | 302036807 | 302036610 | 1.530000e-56 | 231 |
33 | TraesCS7D01G266300 | chr5D | 87.374 | 198 | 24 | 1 | 1 | 197 | 364407020 | 364406823 | 7.140000e-55 | 226 |
34 | TraesCS7D01G266300 | chr5D | 87.310 | 197 | 23 | 2 | 2 | 197 | 366099953 | 366099758 | 2.570000e-54 | 224 |
35 | TraesCS7D01G266300 | chr1D | 87.374 | 198 | 24 | 1 | 1 | 197 | 367923937 | 367923740 | 7.140000e-55 | 226 |
36 | TraesCS7D01G266300 | chr6B | 91.667 | 156 | 10 | 3 | 6615 | 6767 | 41607152 | 41606997 | 5.560000e-51 | 213 |
37 | TraesCS7D01G266300 | chr1B | 90.850 | 153 | 12 | 2 | 6616 | 6767 | 31175537 | 31175688 | 3.350000e-48 | 204 |
38 | TraesCS7D01G266300 | chr1B | 88.961 | 154 | 16 | 1 | 6615 | 6767 | 12095807 | 12095960 | 9.370000e-44 | 189 |
39 | TraesCS7D01G266300 | chrUn | 88.961 | 154 | 16 | 1 | 6615 | 6767 | 391378856 | 391379009 | 9.370000e-44 | 189 |
40 | TraesCS7D01G266300 | chrUn | 88.961 | 154 | 16 | 1 | 6615 | 6767 | 391465443 | 391465596 | 9.370000e-44 | 189 |
41 | TraesCS7D01G266300 | chr2A | 88.235 | 153 | 17 | 1 | 6615 | 6766 | 722814484 | 722814332 | 1.570000e-41 | 182 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G266300 | chr7D | 249367711 | 249374785 | 7074 | False | 6159.000000 | 11219 | 100.000000 | 1 | 7075 | 2 | chr7D.!!$F2 | 7074 |
1 | TraesCS7D01G266300 | chr7D | 249370328 | 249371047 | 719 | False | 359.000000 | 359 | 86.217000 | 2618 | 3337 | 2 | chr7D.!!$F3 | 719 |
2 | TraesCS7D01G266300 | chr7A | 271793794 | 271800398 | 6604 | True | 1619.166667 | 5252 | 90.424667 | 202 | 7075 | 6 | chr7A.!!$R1 | 6873 |
3 | TraesCS7D01G266300 | chr7B | 226326094 | 226333004 | 6910 | False | 1272.000000 | 2894 | 90.580167 | 1 | 7075 | 6 | chr7B.!!$F1 | 7074 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
190 | 191 | 0.106619 | TTAGGAGAGTCTCGAGGGGC | 60.107 | 60.000 | 13.56 | 3.54 | 0.00 | 5.80 | F |
1212 | 1231 | 0.250124 | TTTCAACCGGATCTGTGCGT | 60.250 | 50.000 | 9.46 | 0.00 | 37.49 | 5.24 | F |
1682 | 1721 | 0.321298 | GCTGTACACGGGTTGGATGT | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 | F |
2529 | 2606 | 0.107703 | GTCCACTGATCGGCCAATGA | 60.108 | 55.000 | 2.24 | 0.00 | 0.00 | 2.57 | F |
3688 | 3770 | 1.544246 | GCCTCGTGCCTTATGGTTTTT | 59.456 | 47.619 | 0.00 | 0.00 | 35.27 | 1.94 | F |
4338 | 5216 | 1.406860 | GCCCTTTCCTTGGTTTGCCA | 61.407 | 55.000 | 0.00 | 0.00 | 44.38 | 4.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1665 | 1704 | 0.035598 | CCACATCCAACCCGTGTACA | 59.964 | 55.0 | 0.00 | 0.00 | 0.00 | 2.90 | R |
2511 | 2588 | 0.107703 | GTCATTGGCCGATCAGTGGA | 60.108 | 55.0 | 1.06 | 0.00 | 0.00 | 4.02 | R |
2589 | 2666 | 0.668535 | AAAACGCAAAGGACCTCTGC | 59.331 | 50.0 | 9.98 | 9.98 | 0.00 | 4.26 | R |
3693 | 3775 | 1.457346 | ACTGTAAGGATGCAAGCAGC | 58.543 | 50.0 | 0.94 | 0.94 | 41.23 | 5.25 | R |
5274 | 6160 | 0.323360 | GGGCCTGCAGTATTTGGACA | 60.323 | 55.0 | 13.81 | 0.00 | 0.00 | 4.02 | R |
6294 | 7208 | 0.107703 | ATGCGGGGATATGGCGTATG | 60.108 | 55.0 | 3.45 | 0.00 | 0.00 | 2.39 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 0.857675 | AAGGTTGGTGTAAAGGCCCT | 59.142 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
24 | 25 | 0.958876 | GTTGGTGTAAAGGCCCTCCG | 60.959 | 60.000 | 0.00 | 0.00 | 37.47 | 4.63 |
30 | 31 | 0.539986 | GTAAAGGCCCTCCGTGATCA | 59.460 | 55.000 | 0.00 | 0.00 | 37.47 | 2.92 |
35 | 36 | 0.181350 | GGCCCTCCGTGATCAAATCT | 59.819 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
44 | 45 | 0.469917 | TGATCAAATCTCCCTCCGGC | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
71 | 72 | 0.611896 | CGGAAAAGGCCCCAAGATGT | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
108 | 109 | 1.008995 | GCTTGCGGCGAAAGAAACA | 60.009 | 52.632 | 31.06 | 4.21 | 0.00 | 2.83 |
127 | 128 | 3.247162 | ACATATTTTTGGTGTGCCCCTT | 58.753 | 40.909 | 0.00 | 0.00 | 0.00 | 3.95 |
128 | 129 | 3.007831 | ACATATTTTTGGTGTGCCCCTTG | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
130 | 131 | 0.618968 | TTTTTGGTGTGCCCCTTGGT | 60.619 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
134 | 135 | 0.621609 | TGGTGTGCCCCTTGGTATAC | 59.378 | 55.000 | 0.00 | 0.00 | 37.58 | 1.47 |
135 | 136 | 0.463116 | GGTGTGCCCCTTGGTATACG | 60.463 | 60.000 | 0.00 | 0.00 | 38.89 | 3.06 |
136 | 137 | 0.463116 | GTGTGCCCCTTGGTATACGG | 60.463 | 60.000 | 0.00 | 0.00 | 29.42 | 4.02 |
137 | 138 | 1.147600 | GTGCCCCTTGGTATACGGG | 59.852 | 63.158 | 8.75 | 8.75 | 38.70 | 5.28 |
156 | 157 | 4.651962 | ACGGGGAATTTTTGGGTATTATGG | 59.348 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
190 | 191 | 0.106619 | TTAGGAGAGTCTCGAGGGGC | 60.107 | 60.000 | 13.56 | 3.54 | 0.00 | 5.80 |
194 | 195 | 3.462678 | GAGTCTCGAGGGGCCCAC | 61.463 | 72.222 | 27.72 | 19.04 | 0.00 | 4.61 |
211 | 212 | 4.379652 | GCCCACAAACATTTTTCTCACAT | 58.620 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
314 | 318 | 6.580788 | CAGAGAAGAAGAAGAATATGCTCCA | 58.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
315 | 319 | 7.046652 | CAGAGAAGAAGAAGAATATGCTCCAA | 58.953 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
1212 | 1231 | 0.250124 | TTTCAACCGGATCTGTGCGT | 60.250 | 50.000 | 9.46 | 0.00 | 37.49 | 5.24 |
1299 | 1332 | 2.265073 | AAAAATGGGCGATCGGCGTG | 62.265 | 55.000 | 31.80 | 0.00 | 44.92 | 5.34 |
1310 | 1343 | 0.521291 | ATCGGCGTGGTTGAATTGTG | 59.479 | 50.000 | 6.85 | 0.00 | 0.00 | 3.33 |
1483 | 1516 | 1.385743 | CCGATTCGAACAGTGTTCGTC | 59.614 | 52.381 | 41.51 | 33.89 | 42.09 | 4.20 |
1492 | 1525 | 1.068055 | ACAGTGTTCGTCGATGGTACC | 60.068 | 52.381 | 4.43 | 4.43 | 0.00 | 3.34 |
1582 | 1621 | 6.761714 | ACATCGTTTTAGGCTTCTAGTTATGG | 59.238 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
1583 | 1622 | 5.114081 | TCGTTTTAGGCTTCTAGTTATGGC | 58.886 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1665 | 1704 | 2.766828 | GGCTATATAATCCCTGGTCGCT | 59.233 | 50.000 | 0.00 | 0.00 | 0.00 | 4.93 |
1682 | 1721 | 0.321298 | GCTGTACACGGGTTGGATGT | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1695 | 1734 | 0.888736 | TGGATGTGGTGCTTCGGTTG | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1697 | 1736 | 2.513065 | GATGTGGTGCTTCGGTTGCG | 62.513 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1768 | 1813 | 1.199097 | GTGGTGGTTGCCTGAATTACG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1781 | 1826 | 5.049680 | GCCTGAATTACGAGTGTTCTTTGAA | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1802 | 1847 | 0.663153 | GTTTTGTCGCTGCTTGGTCT | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1903 | 1948 | 8.938801 | TTATGATGTATTAACCTTGGCATGAT | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
2188 | 2257 | 1.963515 | AGAAACAATCCAACACCTGCC | 59.036 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
2192 | 2261 | 1.077265 | AATCCAACACCTGCCCCTG | 59.923 | 57.895 | 0.00 | 0.00 | 0.00 | 4.45 |
2208 | 2277 | 3.249189 | TGACCTGCCCCTTCGCTT | 61.249 | 61.111 | 0.00 | 0.00 | 0.00 | 4.68 |
2243 | 2312 | 1.376424 | CATCCTGTCTTGGCTGCGT | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 5.24 |
2311 | 2380 | 1.845266 | CTGCGAGTGAACGAGCATAT | 58.155 | 50.000 | 6.39 | 0.00 | 39.02 | 1.78 |
2314 | 2383 | 0.855349 | CGAGTGAACGAGCATATGCC | 59.145 | 55.000 | 23.96 | 14.15 | 43.38 | 4.40 |
2317 | 2386 | 1.069204 | AGTGAACGAGCATATGCCGAT | 59.931 | 47.619 | 31.64 | 24.62 | 43.38 | 4.18 |
2407 | 2476 | 3.258498 | CGTCTTTGACAATGCGACG | 57.742 | 52.632 | 15.79 | 15.79 | 40.92 | 5.12 |
2501 | 2578 | 4.519610 | GGGTTGTTCTGCCCACAT | 57.480 | 55.556 | 0.00 | 0.00 | 44.23 | 3.21 |
2529 | 2606 | 0.107703 | GTCCACTGATCGGCCAATGA | 60.108 | 55.000 | 2.24 | 0.00 | 0.00 | 2.57 |
2576 | 2653 | 5.440610 | AGGCTTGTTCTCTCTTTCTTTTCA | 58.559 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2589 | 2666 | 9.236691 | TCTCTTTCTTTTCAATGAAATGAAACG | 57.763 | 29.630 | 29.61 | 25.53 | 46.06 | 3.60 |
2616 | 2693 | 3.289076 | GTCCTTTGCGTTTTCTCGAAAG | 58.711 | 45.455 | 0.00 | 0.00 | 32.99 | 2.62 |
3567 | 3649 | 6.737254 | ATACACATCTAAGGGTTCAAAACG | 57.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.60 |
3681 | 3763 | 2.899900 | TCATATGAGCCTCGTGCCTTAT | 59.100 | 45.455 | 0.00 | 0.00 | 42.71 | 1.73 |
3688 | 3770 | 1.544246 | GCCTCGTGCCTTATGGTTTTT | 59.456 | 47.619 | 0.00 | 0.00 | 35.27 | 1.94 |
3689 | 3771 | 2.750712 | GCCTCGTGCCTTATGGTTTTTA | 59.249 | 45.455 | 0.00 | 0.00 | 35.27 | 1.52 |
3690 | 3772 | 3.380320 | GCCTCGTGCCTTATGGTTTTTAT | 59.620 | 43.478 | 0.00 | 0.00 | 35.27 | 1.40 |
3691 | 3773 | 4.733523 | GCCTCGTGCCTTATGGTTTTTATG | 60.734 | 45.833 | 0.00 | 0.00 | 35.27 | 1.90 |
3692 | 3774 | 4.398044 | CCTCGTGCCTTATGGTTTTTATGT | 59.602 | 41.667 | 0.00 | 0.00 | 35.27 | 2.29 |
3693 | 3775 | 5.303747 | TCGTGCCTTATGGTTTTTATGTG | 57.696 | 39.130 | 0.00 | 0.00 | 35.27 | 3.21 |
3694 | 3776 | 3.857093 | CGTGCCTTATGGTTTTTATGTGC | 59.143 | 43.478 | 0.00 | 0.00 | 35.27 | 4.57 |
3695 | 3777 | 4.380444 | CGTGCCTTATGGTTTTTATGTGCT | 60.380 | 41.667 | 0.00 | 0.00 | 35.27 | 4.40 |
3696 | 3778 | 4.864247 | GTGCCTTATGGTTTTTATGTGCTG | 59.136 | 41.667 | 0.00 | 0.00 | 35.27 | 4.41 |
3697 | 3779 | 3.865164 | GCCTTATGGTTTTTATGTGCTGC | 59.135 | 43.478 | 0.00 | 0.00 | 35.27 | 5.25 |
3698 | 3780 | 4.381932 | GCCTTATGGTTTTTATGTGCTGCT | 60.382 | 41.667 | 0.00 | 0.00 | 35.27 | 4.24 |
3699 | 3781 | 5.723295 | CCTTATGGTTTTTATGTGCTGCTT | 58.277 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
3700 | 3782 | 5.577945 | CCTTATGGTTTTTATGTGCTGCTTG | 59.422 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3701 | 3783 | 2.753296 | TGGTTTTTATGTGCTGCTTGC | 58.247 | 42.857 | 0.00 | 0.00 | 43.25 | 4.01 |
3712 | 3794 | 1.457346 | GCTGCTTGCATCCTTACAGT | 58.543 | 50.000 | 0.00 | 0.00 | 42.31 | 3.55 |
3713 | 3795 | 1.815003 | GCTGCTTGCATCCTTACAGTT | 59.185 | 47.619 | 0.00 | 0.00 | 42.31 | 3.16 |
3714 | 3796 | 2.229784 | GCTGCTTGCATCCTTACAGTTT | 59.770 | 45.455 | 0.00 | 0.00 | 42.31 | 2.66 |
3715 | 3797 | 3.305608 | GCTGCTTGCATCCTTACAGTTTT | 60.306 | 43.478 | 0.00 | 0.00 | 42.31 | 2.43 |
3772 | 3854 | 4.067192 | AGGCATTTTCAGTTTTGGAATGC | 58.933 | 39.130 | 10.05 | 10.05 | 44.41 | 3.56 |
3774 | 3856 | 3.814283 | GCATTTTCAGTTTTGGAATGCCA | 59.186 | 39.130 | 7.86 | 0.00 | 42.20 | 4.92 |
3976 | 4059 | 9.780413 | GGTTAATGATCTAAAAGCAAGAAAGAG | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
4334 | 5212 | 3.582164 | TGTATTGCCCTTTCCTTGGTTT | 58.418 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
4338 | 5216 | 1.406860 | GCCCTTTCCTTGGTTTGCCA | 61.407 | 55.000 | 0.00 | 0.00 | 44.38 | 4.92 |
4436 | 5314 | 6.261826 | ACACTTCATCAGGTTCTTCAAAGAAG | 59.738 | 38.462 | 5.45 | 0.39 | 45.01 | 2.85 |
5526 | 6412 | 2.753029 | GGCTGAGGTTGGAGTGCT | 59.247 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
5754 | 6640 | 3.811807 | CTCCCGGGGAGCGGATACT | 62.812 | 68.421 | 29.32 | 0.00 | 43.29 | 2.12 |
6083 | 6981 | 1.269206 | ACTCATTGCCGCAGTTGTTTG | 60.269 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
6104 | 7002 | 1.686587 | TCTCAAGTCGTGCTTTCCTGA | 59.313 | 47.619 | 0.00 | 0.00 | 34.69 | 3.86 |
6134 | 7038 | 0.318360 | GGTTTTGCTACCGGTTGTGC | 60.318 | 55.000 | 15.04 | 16.09 | 0.00 | 4.57 |
6188 | 7092 | 0.836400 | ATCACCGGACACAGGAGGTT | 60.836 | 55.000 | 9.46 | 0.00 | 34.25 | 3.50 |
6206 | 7120 | 0.461870 | TTGATCGGGACTTGATGGCG | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
6223 | 7137 | 3.244582 | TGGCGACTAATATGGGGTACAT | 58.755 | 45.455 | 0.00 | 0.00 | 43.68 | 2.29 |
6240 | 7154 | 5.279809 | GGGTACATGACTCCTCAAACTGTAA | 60.280 | 44.000 | 0.00 | 0.00 | 0.00 | 2.41 |
6243 | 7157 | 6.808008 | ACATGACTCCTCAAACTGTAATTG | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
6289 | 7203 | 8.884124 | TGATTGGATGAACTCTCCTTAAAAAT | 57.116 | 30.769 | 0.00 | 0.00 | 33.69 | 1.82 |
6290 | 7204 | 8.742777 | TGATTGGATGAACTCTCCTTAAAAATG | 58.257 | 33.333 | 0.00 | 0.00 | 33.69 | 2.32 |
6291 | 7205 | 6.515272 | TGGATGAACTCTCCTTAAAAATGC | 57.485 | 37.500 | 0.00 | 0.00 | 33.69 | 3.56 |
6292 | 7206 | 5.418840 | TGGATGAACTCTCCTTAAAAATGCC | 59.581 | 40.000 | 0.00 | 0.00 | 33.69 | 4.40 |
6293 | 7207 | 5.163509 | GGATGAACTCTCCTTAAAAATGCCC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 5.36 |
6294 | 7208 | 4.086457 | TGAACTCTCCTTAAAAATGCCCC | 58.914 | 43.478 | 0.00 | 0.00 | 0.00 | 5.80 |
6295 | 7209 | 3.825908 | ACTCTCCTTAAAAATGCCCCA | 57.174 | 42.857 | 0.00 | 0.00 | 0.00 | 4.96 |
6296 | 7210 | 4.337264 | ACTCTCCTTAAAAATGCCCCAT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
6299 | 7213 | 4.204012 | TCTCCTTAAAAATGCCCCATACG | 58.796 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
6305 | 7219 | 2.603075 | AAATGCCCCATACGCCATAT | 57.397 | 45.000 | 0.00 | 0.00 | 0.00 | 1.78 |
6321 | 7235 | 3.071602 | GCCATATCCCCGCATATAGATGT | 59.928 | 47.826 | 0.00 | 0.00 | 35.30 | 3.06 |
6334 | 7248 | 2.904697 | TAGATGTGGAGATGCAGCTG | 57.095 | 50.000 | 10.40 | 10.11 | 33.18 | 4.24 |
6354 | 7271 | 4.286032 | GCTGTACCTATAATCCCATCACCA | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 4.17 |
6378 | 7295 | 4.115199 | GAGCCAACCGCCTGGGAT | 62.115 | 66.667 | 0.00 | 0.00 | 40.75 | 3.85 |
6379 | 7296 | 3.645268 | GAGCCAACCGCCTGGGATT | 62.645 | 63.158 | 0.00 | 0.00 | 40.75 | 3.01 |
6380 | 7297 | 2.679996 | GCCAACCGCCTGGGATTT | 60.680 | 61.111 | 0.00 | 0.00 | 40.75 | 2.17 |
6381 | 7298 | 2.710902 | GCCAACCGCCTGGGATTTC | 61.711 | 63.158 | 0.00 | 0.00 | 40.75 | 2.17 |
6382 | 7299 | 1.304052 | CCAACCGCCTGGGATTTCA | 60.304 | 57.895 | 0.00 | 0.00 | 40.75 | 2.69 |
6384 | 7301 | 1.674322 | AACCGCCTGGGATTTCACG | 60.674 | 57.895 | 0.00 | 0.00 | 40.75 | 4.35 |
6385 | 7302 | 2.824041 | CCGCCTGGGATTTCACGG | 60.824 | 66.667 | 0.00 | 0.00 | 38.47 | 4.94 |
6386 | 7303 | 2.046314 | CGCCTGGGATTTCACGGT | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 4.83 |
6387 | 7304 | 2.106683 | CGCCTGGGATTTCACGGTC | 61.107 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
6388 | 7305 | 1.299976 | GCCTGGGATTTCACGGTCT | 59.700 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
6389 | 7306 | 0.539986 | GCCTGGGATTTCACGGTCTA | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6390 | 7307 | 1.473434 | GCCTGGGATTTCACGGTCTAG | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 2.43 |
6391 | 7308 | 1.473434 | CCTGGGATTTCACGGTCTAGC | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 3.42 |
6392 | 7309 | 0.174845 | TGGGATTTCACGGTCTAGCG | 59.825 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
6393 | 7310 | 1.152383 | GGGATTTCACGGTCTAGCGC | 61.152 | 60.000 | 0.00 | 0.00 | 0.00 | 5.92 |
6394 | 7311 | 1.480219 | GGATTTCACGGTCTAGCGCG | 61.480 | 60.000 | 0.00 | 0.00 | 0.00 | 6.86 |
6395 | 7312 | 2.078958 | GATTTCACGGTCTAGCGCGC | 62.079 | 60.000 | 26.66 | 26.66 | 0.00 | 6.86 |
6396 | 7313 | 4.789075 | TTCACGGTCTAGCGCGCC | 62.789 | 66.667 | 30.33 | 12.61 | 0.00 | 6.53 |
6418 | 7335 | 4.473520 | CCATGACGGGCCGAAGCT | 62.474 | 66.667 | 35.78 | 10.44 | 39.73 | 3.74 |
6419 | 7336 | 2.892425 | CATGACGGGCCGAAGCTC | 60.892 | 66.667 | 35.78 | 20.32 | 39.73 | 4.09 |
6448 | 7365 | 3.095911 | CGATCACGCTGCTGCATT | 58.904 | 55.556 | 16.29 | 0.00 | 39.64 | 3.56 |
6451 | 7368 | 0.169672 | GATCACGCTGCTGCATTGTT | 59.830 | 50.000 | 16.29 | 6.89 | 39.64 | 2.83 |
6454 | 7371 | 2.195567 | ACGCTGCTGCATTGTTGGT | 61.196 | 52.632 | 16.29 | 0.37 | 39.64 | 3.67 |
6460 | 7377 | 1.005867 | CTGCATTGTTGGTGGCCAC | 60.006 | 57.895 | 28.57 | 28.57 | 30.78 | 5.01 |
6462 | 7379 | 2.855514 | GCATTGTTGGTGGCCACGT | 61.856 | 57.895 | 29.08 | 8.13 | 30.78 | 4.49 |
6463 | 7380 | 1.007502 | CATTGTTGGTGGCCACGTG | 60.008 | 57.895 | 29.08 | 15.80 | 30.78 | 4.49 |
6522 | 7439 | 1.064758 | TCCATTGATACCACACTGCCC | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
6543 | 7460 | 2.284190 | GCCTTCTAGAGCAACACATCC | 58.716 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
6544 | 7461 | 2.093235 | GCCTTCTAGAGCAACACATCCT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
6584 | 7501 | 5.615925 | ATTAAGAGAGACCCTAAACGCAT | 57.384 | 39.130 | 0.00 | 0.00 | 0.00 | 4.73 |
6616 | 7696 | 3.685435 | GGGAACCGGTCGTCTGTA | 58.315 | 61.111 | 8.04 | 0.00 | 40.86 | 2.74 |
6617 | 7697 | 1.509923 | GGGAACCGGTCGTCTGTAG | 59.490 | 63.158 | 8.04 | 0.00 | 40.86 | 2.74 |
6619 | 7699 | 1.593296 | GGAACCGGTCGTCTGTAGCT | 61.593 | 60.000 | 8.04 | 0.00 | 0.00 | 3.32 |
6621 | 7701 | 1.063764 | GAACCGGTCGTCTGTAGCTAG | 59.936 | 57.143 | 8.04 | 0.00 | 0.00 | 3.42 |
6623 | 7703 | 1.445716 | CCGGTCGTCTGTAGCTAGGG | 61.446 | 65.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6624 | 7704 | 1.445716 | CGGTCGTCTGTAGCTAGGGG | 61.446 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6626 | 7706 | 0.395448 | GTCGTCTGTAGCTAGGGGGT | 60.395 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
6627 | 7707 | 0.395311 | TCGTCTGTAGCTAGGGGGTG | 60.395 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
6629 | 7709 | 0.032416 | GTCTGTAGCTAGGGGGTGGA | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6631 | 7711 | 0.325296 | CTGTAGCTAGGGGGTGGACA | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6632 | 7712 | 0.325296 | TGTAGCTAGGGGGTGGACAG | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6634 | 7714 | 2.252012 | TAGCTAGGGGGTGGACAGGG | 62.252 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
6635 | 7715 | 2.454941 | CTAGGGGGTGGACAGGGT | 59.545 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
6636 | 7716 | 1.995626 | CTAGGGGGTGGACAGGGTG | 60.996 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
6637 | 7717 | 3.572715 | TAGGGGGTGGACAGGGTGG | 62.573 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
6639 | 7719 | 3.647771 | GGGGTGGACAGGGTGGTC | 61.648 | 72.222 | 0.00 | 0.00 | 37.06 | 4.02 |
6656 | 7736 | 2.806945 | GTCCATGGACCATCCTGAAA | 57.193 | 50.000 | 31.37 | 0.00 | 39.08 | 2.69 |
6657 | 7737 | 3.085952 | GTCCATGGACCATCCTGAAAA | 57.914 | 47.619 | 31.37 | 0.00 | 39.08 | 2.29 |
6658 | 7738 | 3.635591 | GTCCATGGACCATCCTGAAAAT | 58.364 | 45.455 | 31.37 | 0.00 | 39.08 | 1.82 |
6659 | 7739 | 4.026052 | GTCCATGGACCATCCTGAAAATT | 58.974 | 43.478 | 31.37 | 0.00 | 39.08 | 1.82 |
6660 | 7740 | 4.098501 | GTCCATGGACCATCCTGAAAATTC | 59.901 | 45.833 | 31.37 | 2.86 | 39.08 | 2.17 |
6661 | 7741 | 3.385755 | CCATGGACCATCCTGAAAATTCC | 59.614 | 47.826 | 5.56 | 0.00 | 37.46 | 3.01 |
6662 | 7742 | 3.100207 | TGGACCATCCTGAAAATTCCC | 57.900 | 47.619 | 0.00 | 0.00 | 37.46 | 3.97 |
6663 | 7743 | 2.292192 | TGGACCATCCTGAAAATTCCCC | 60.292 | 50.000 | 0.00 | 0.00 | 37.46 | 4.81 |
6664 | 7744 | 2.388735 | GACCATCCTGAAAATTCCCCC | 58.611 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
6665 | 7745 | 1.721691 | ACCATCCTGAAAATTCCCCCA | 59.278 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
6666 | 7746 | 2.318822 | ACCATCCTGAAAATTCCCCCAT | 59.681 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6667 | 7747 | 3.535590 | ACCATCCTGAAAATTCCCCCATA | 59.464 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
6668 | 7748 | 4.154942 | CCATCCTGAAAATTCCCCCATAG | 58.845 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
6669 | 7749 | 3.312736 | TCCTGAAAATTCCCCCATAGC | 57.687 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
6670 | 7750 | 2.091333 | TCCTGAAAATTCCCCCATAGCC | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
6671 | 7751 | 2.359143 | CCTGAAAATTCCCCCATAGCCA | 60.359 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
6672 | 7752 | 3.373830 | CTGAAAATTCCCCCATAGCCAA | 58.626 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
6673 | 7753 | 3.969312 | CTGAAAATTCCCCCATAGCCAAT | 59.031 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
6674 | 7754 | 5.147032 | CTGAAAATTCCCCCATAGCCAATA | 58.853 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
6675 | 7755 | 5.725490 | TGAAAATTCCCCCATAGCCAATAT | 58.275 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
6676 | 7756 | 6.868826 | TGAAAATTCCCCCATAGCCAATATA | 58.131 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
6677 | 7757 | 7.486473 | TGAAAATTCCCCCATAGCCAATATAT | 58.514 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
6678 | 7758 | 8.628281 | TGAAAATTCCCCCATAGCCAATATATA | 58.372 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
6679 | 7759 | 9.136323 | GAAAATTCCCCCATAGCCAATATATAG | 57.864 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
6680 | 7760 | 6.786843 | ATTCCCCCATAGCCAATATATAGG | 57.213 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
6681 | 7761 | 5.249301 | TCCCCCATAGCCAATATATAGGT | 57.751 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
6682 | 7762 | 5.619926 | TCCCCCATAGCCAATATATAGGTT | 58.380 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
6683 | 7763 | 6.768914 | TCCCCCATAGCCAATATATAGGTTA | 58.231 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
6684 | 7764 | 6.849697 | TCCCCCATAGCCAATATATAGGTTAG | 59.150 | 42.308 | 0.00 | 0.00 | 0.00 | 2.34 |
6685 | 7765 | 6.849697 | CCCCCATAGCCAATATATAGGTTAGA | 59.150 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
6686 | 7766 | 7.349859 | CCCCCATAGCCAATATATAGGTTAGAA | 59.650 | 40.741 | 0.00 | 0.00 | 0.00 | 2.10 |
6687 | 7767 | 8.778059 | CCCCATAGCCAATATATAGGTTAGAAA | 58.222 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
6738 | 7818 | 9.332301 | GAATTACATGCAAATTTTCATTGTTGG | 57.668 | 29.630 | 0.17 | 0.00 | 0.00 | 3.77 |
6739 | 7819 | 8.618702 | ATTACATGCAAATTTTCATTGTTGGA | 57.381 | 26.923 | 0.17 | 0.00 | 0.00 | 3.53 |
6740 | 7820 | 6.303021 | ACATGCAAATTTTCATTGTTGGAC | 57.697 | 33.333 | 0.17 | 0.00 | 0.00 | 4.02 |
6741 | 7821 | 5.239087 | ACATGCAAATTTTCATTGTTGGACC | 59.761 | 36.000 | 0.17 | 0.00 | 0.00 | 4.46 |
6742 | 7822 | 4.774124 | TGCAAATTTTCATTGTTGGACCA | 58.226 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
6743 | 7823 | 4.574013 | TGCAAATTTTCATTGTTGGACCAC | 59.426 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
6744 | 7824 | 4.024133 | GCAAATTTTCATTGTTGGACCACC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
6745 | 7825 | 4.350368 | AATTTTCATTGTTGGACCACCC | 57.650 | 40.909 | 0.00 | 0.00 | 34.81 | 4.61 |
6746 | 7826 | 2.765689 | TTTCATTGTTGGACCACCCT | 57.234 | 45.000 | 0.00 | 0.00 | 35.38 | 4.34 |
6747 | 7827 | 1.993956 | TTCATTGTTGGACCACCCTG | 58.006 | 50.000 | 0.00 | 0.00 | 35.38 | 4.45 |
6748 | 7828 | 0.112218 | TCATTGTTGGACCACCCTGG | 59.888 | 55.000 | 0.00 | 0.00 | 45.02 | 4.45 |
6749 | 7829 | 1.228862 | ATTGTTGGACCACCCTGGC | 60.229 | 57.895 | 0.00 | 0.00 | 42.67 | 4.85 |
6750 | 7830 | 1.729267 | ATTGTTGGACCACCCTGGCT | 61.729 | 55.000 | 0.00 | 0.00 | 42.67 | 4.75 |
6751 | 7831 | 2.034221 | GTTGGACCACCCTGGCTC | 59.966 | 66.667 | 0.00 | 0.00 | 42.67 | 4.70 |
6752 | 7832 | 2.449518 | TTGGACCACCCTGGCTCA | 60.450 | 61.111 | 0.00 | 0.00 | 42.67 | 4.26 |
6753 | 7833 | 2.829384 | TTGGACCACCCTGGCTCAC | 61.829 | 63.158 | 0.00 | 0.00 | 42.67 | 3.51 |
6754 | 7834 | 4.035102 | GGACCACCCTGGCTCACC | 62.035 | 72.222 | 0.00 | 0.00 | 42.67 | 4.02 |
6755 | 7835 | 4.394712 | GACCACCCTGGCTCACCG | 62.395 | 72.222 | 0.00 | 0.00 | 42.67 | 4.94 |
6756 | 7836 | 4.954118 | ACCACCCTGGCTCACCGA | 62.954 | 66.667 | 0.00 | 0.00 | 42.67 | 4.69 |
6757 | 7837 | 4.087892 | CCACCCTGGCTCACCGAG | 62.088 | 72.222 | 0.00 | 0.00 | 39.70 | 4.63 |
6766 | 7846 | 2.103143 | CTCACCGAGCTGGCTACG | 59.897 | 66.667 | 0.00 | 1.74 | 43.94 | 3.51 |
6767 | 7847 | 2.675423 | TCACCGAGCTGGCTACGT | 60.675 | 61.111 | 0.00 | 0.00 | 43.94 | 3.57 |
6768 | 7848 | 2.202623 | CACCGAGCTGGCTACGTC | 60.203 | 66.667 | 0.00 | 0.00 | 43.94 | 4.34 |
6769 | 7849 | 2.675423 | ACCGAGCTGGCTACGTCA | 60.675 | 61.111 | 0.00 | 0.00 | 43.94 | 4.35 |
6770 | 7850 | 2.052690 | ACCGAGCTGGCTACGTCAT | 61.053 | 57.895 | 0.00 | 0.00 | 43.94 | 3.06 |
6771 | 7851 | 1.141881 | CCGAGCTGGCTACGTCATT | 59.858 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
6772 | 7852 | 0.460284 | CCGAGCTGGCTACGTCATTT | 60.460 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
6779 | 7859 | 4.700213 | AGCTGGCTACGTCATTTACATTTT | 59.300 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
6783 | 7863 | 6.607689 | TGGCTACGTCATTTACATTTTCAAG | 58.392 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
6952 | 8033 | 3.620488 | TGCTTTCTCAGTGTGAACCTTT | 58.380 | 40.909 | 7.12 | 0.00 | 0.00 | 3.11 |
6956 | 8037 | 5.731686 | GCTTTCTCAGTGTGAACCTTTCTTG | 60.732 | 44.000 | 7.12 | 0.00 | 0.00 | 3.02 |
6958 | 8039 | 2.945008 | CTCAGTGTGAACCTTTCTTGCA | 59.055 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
6959 | 8040 | 3.351740 | TCAGTGTGAACCTTTCTTGCAA | 58.648 | 40.909 | 0.00 | 0.00 | 0.00 | 4.08 |
6960 | 8041 | 3.128589 | TCAGTGTGAACCTTTCTTGCAAC | 59.871 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
6963 | 8044 | 0.383949 | TGAACCTTTCTTGCAACGCC | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
6964 | 8045 | 0.660300 | GAACCTTTCTTGCAACGCCG | 60.660 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
6965 | 8046 | 2.070654 | AACCTTTCTTGCAACGCCGG | 62.071 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
6966 | 8047 | 2.429069 | CTTTCTTGCAACGCCGGC | 60.429 | 61.111 | 19.07 | 19.07 | 0.00 | 6.13 |
6967 | 8048 | 3.896863 | CTTTCTTGCAACGCCGGCC | 62.897 | 63.158 | 23.46 | 7.25 | 0.00 | 6.13 |
6978 | 8059 | 4.434354 | GCCGGCCCACCAATGGTA | 62.434 | 66.667 | 18.11 | 0.00 | 45.66 | 3.25 |
6979 | 8060 | 2.600731 | CCGGCCCACCAATGGTAT | 59.399 | 61.111 | 3.85 | 0.00 | 45.66 | 2.73 |
6980 | 8061 | 1.528309 | CCGGCCCACCAATGGTATC | 60.528 | 63.158 | 3.85 | 0.00 | 45.66 | 2.24 |
6993 | 8074 | 1.078988 | GGTATCCGCGTGAAACCCA | 60.079 | 57.895 | 4.92 | 0.00 | 0.00 | 4.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 0.252197 | ATCACGGAGGGCCTTTACAC | 59.748 | 55.000 | 7.89 | 0.00 | 0.00 | 2.90 |
14 | 15 | 0.625849 | ATTTGATCACGGAGGGCCTT | 59.374 | 50.000 | 7.89 | 0.00 | 0.00 | 4.35 |
21 | 22 | 1.762957 | GGAGGGAGATTTGATCACGGA | 59.237 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
44 | 45 | 0.955919 | GGGCCTTTTCCGACACTCTG | 60.956 | 60.000 | 0.84 | 0.00 | 0.00 | 3.35 |
71 | 72 | 2.822561 | AGCTTCTGTTCTCGTGAGATCA | 59.177 | 45.455 | 9.59 | 9.59 | 40.84 | 2.92 |
100 | 101 | 5.762711 | GGGCACACCAAAAATATGTTTCTTT | 59.237 | 36.000 | 0.00 | 0.00 | 39.85 | 2.52 |
101 | 102 | 5.304778 | GGGCACACCAAAAATATGTTTCTT | 58.695 | 37.500 | 0.00 | 0.00 | 39.85 | 2.52 |
102 | 103 | 4.262851 | GGGGCACACCAAAAATATGTTTCT | 60.263 | 41.667 | 0.00 | 0.00 | 42.91 | 2.52 |
108 | 109 | 2.571202 | CCAAGGGGCACACCAAAAATAT | 59.429 | 45.455 | 0.00 | 0.00 | 42.91 | 1.28 |
127 | 128 | 3.011482 | ACCCAAAAATTCCCCGTATACCA | 59.989 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
128 | 129 | 3.634504 | ACCCAAAAATTCCCCGTATACC | 58.365 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
130 | 131 | 7.670559 | CCATAATACCCAAAAATTCCCCGTATA | 59.329 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
134 | 135 | 4.896482 | TCCATAATACCCAAAAATTCCCCG | 59.104 | 41.667 | 0.00 | 0.00 | 0.00 | 5.73 |
135 | 136 | 5.221641 | GCTCCATAATACCCAAAAATTCCCC | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.81 |
136 | 137 | 5.602561 | AGCTCCATAATACCCAAAAATTCCC | 59.397 | 40.000 | 0.00 | 0.00 | 0.00 | 3.97 |
137 | 138 | 6.323739 | TCAGCTCCATAATACCCAAAAATTCC | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
138 | 139 | 7.285401 | TCTCAGCTCCATAATACCCAAAAATTC | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
139 | 140 | 7.125391 | TCTCAGCTCCATAATACCCAAAAATT | 58.875 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
140 | 141 | 6.672593 | TCTCAGCTCCATAATACCCAAAAAT | 58.327 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
141 | 142 | 6.073447 | TCTCAGCTCCATAATACCCAAAAA | 57.927 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
142 | 143 | 5.708736 | TCTCAGCTCCATAATACCCAAAA | 57.291 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
156 | 157 | 6.010219 | ACTCTCCTAATCCTAATCTCAGCTC | 58.990 | 44.000 | 0.00 | 0.00 | 0.00 | 4.09 |
190 | 191 | 5.846203 | AGATGTGAGAAAAATGTTTGTGGG | 58.154 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
219 | 220 | 3.311596 | GTCTGCTTCGGTTGTTTGTAAGT | 59.688 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
237 | 241 | 2.575805 | AGAGGGCTGGAAAAAGTCTG | 57.424 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
314 | 318 | 0.655733 | CACGTGTTCCGAGTTTGCTT | 59.344 | 50.000 | 7.58 | 0.00 | 40.70 | 3.91 |
315 | 319 | 0.461339 | ACACGTGTTCCGAGTTTGCT | 60.461 | 50.000 | 17.22 | 0.00 | 37.02 | 3.91 |
1212 | 1231 | 5.592054 | GTCGAATTACATGTCCATCTCTCA | 58.408 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
1259 | 1290 | 5.499004 | TTACAGTCCACAGCCTAAAATCT | 57.501 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
1299 | 1332 | 1.199097 | CCACGGTAGCACAATTCAACC | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
1310 | 1343 | 0.947180 | TGCGAACTTTCCACGGTAGC | 60.947 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1483 | 1516 | 9.151471 | CACCATAAATAAATCTAGGTACCATCG | 57.849 | 37.037 | 15.94 | 1.47 | 0.00 | 3.84 |
1582 | 1621 | 1.005630 | ACCAAGAGCTCAGTGTCGC | 60.006 | 57.895 | 17.77 | 0.00 | 0.00 | 5.19 |
1583 | 1622 | 1.287730 | GCACCAAGAGCTCAGTGTCG | 61.288 | 60.000 | 23.96 | 13.06 | 32.75 | 4.35 |
1665 | 1704 | 0.035598 | CCACATCCAACCCGTGTACA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1682 | 1721 | 4.555709 | ACCGCAACCGAAGCACCA | 62.556 | 61.111 | 0.00 | 0.00 | 36.29 | 4.17 |
1695 | 1734 | 2.038387 | ACACCCTGATAAATGACCGC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1697 | 1736 | 3.963129 | TGGAACACCCTGATAAATGACC | 58.037 | 45.455 | 0.00 | 0.00 | 35.38 | 4.02 |
1768 | 1813 | 5.028375 | CGACAAAACCTTCAAAGAACACTC | 58.972 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1781 | 1826 | 0.751643 | ACCAAGCAGCGACAAAACCT | 60.752 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1802 | 1847 | 7.987649 | ACTAACAAAGAAACGGACAAATAACA | 58.012 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
1831 | 1876 | 4.744631 | CCCAAAACAAACAGCAGATACAAC | 59.255 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
1903 | 1948 | 4.711846 | ACACTCATAGAGCATTCACCTACA | 59.288 | 41.667 | 0.00 | 0.00 | 32.04 | 2.74 |
2188 | 2257 | 4.101448 | CGAAGGGGCAGGTCAGGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 4.45 |
2192 | 2261 | 2.747855 | CAAGCGAAGGGGCAGGTC | 60.748 | 66.667 | 0.00 | 0.00 | 34.64 | 3.85 |
2243 | 2312 | 2.751436 | GGCGCCTGGATCAGCAAA | 60.751 | 61.111 | 22.15 | 0.00 | 0.00 | 3.68 |
2299 | 2368 | 1.068434 | TCATCGGCATATGCTCGTTCA | 59.932 | 47.619 | 26.12 | 12.76 | 41.70 | 3.18 |
2317 | 2386 | 2.829914 | GGGCCTTGCGATGCATCA | 60.830 | 61.111 | 25.70 | 5.71 | 38.76 | 3.07 |
2407 | 2476 | 0.876342 | CTAGCAAATCGACCGAGGGC | 60.876 | 60.000 | 0.00 | 1.96 | 0.00 | 5.19 |
2511 | 2588 | 0.107703 | GTCATTGGCCGATCAGTGGA | 60.108 | 55.000 | 1.06 | 0.00 | 0.00 | 4.02 |
2529 | 2606 | 5.546499 | TCCTAGGAGGTGAGTTTTACAATGT | 59.454 | 40.000 | 7.62 | 0.00 | 36.53 | 2.71 |
2576 | 2653 | 3.191371 | GGACCTCTGCGTTTCATTTCATT | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2589 | 2666 | 0.668535 | AAAACGCAAAGGACCTCTGC | 59.331 | 50.000 | 9.98 | 9.98 | 0.00 | 4.26 |
2616 | 2693 | 5.690409 | CCACTATTTCTTGCATGCATGATTC | 59.310 | 40.000 | 30.13 | 13.12 | 31.64 | 2.52 |
3681 | 3763 | 2.753296 | GCAAGCAGCACATAAAAACCA | 58.247 | 42.857 | 0.00 | 0.00 | 44.79 | 3.67 |
3693 | 3775 | 1.457346 | ACTGTAAGGATGCAAGCAGC | 58.543 | 50.000 | 0.94 | 0.94 | 41.23 | 5.25 |
3694 | 3776 | 4.510038 | AAAACTGTAAGGATGCAAGCAG | 57.490 | 40.909 | 0.00 | 0.00 | 39.30 | 4.24 |
3695 | 3777 | 4.935352 | AAAAACTGTAAGGATGCAAGCA | 57.065 | 36.364 | 0.00 | 0.00 | 39.30 | 3.91 |
3696 | 3778 | 6.308766 | CACATAAAAACTGTAAGGATGCAAGC | 59.691 | 38.462 | 0.00 | 0.00 | 39.30 | 4.01 |
3697 | 3779 | 6.308766 | GCACATAAAAACTGTAAGGATGCAAG | 59.691 | 38.462 | 0.00 | 0.00 | 39.30 | 4.01 |
3698 | 3780 | 6.015519 | AGCACATAAAAACTGTAAGGATGCAA | 60.016 | 34.615 | 0.00 | 0.00 | 39.30 | 4.08 |
3699 | 3781 | 5.476599 | AGCACATAAAAACTGTAAGGATGCA | 59.523 | 36.000 | 0.00 | 0.00 | 39.30 | 3.96 |
3700 | 3782 | 5.801947 | CAGCACATAAAAACTGTAAGGATGC | 59.198 | 40.000 | 0.00 | 0.00 | 39.30 | 3.91 |
3701 | 3783 | 5.801947 | GCAGCACATAAAAACTGTAAGGATG | 59.198 | 40.000 | 0.00 | 0.00 | 39.30 | 3.51 |
3702 | 3784 | 5.711976 | AGCAGCACATAAAAACTGTAAGGAT | 59.288 | 36.000 | 0.00 | 0.00 | 39.30 | 3.24 |
3703 | 3785 | 5.070001 | AGCAGCACATAAAAACTGTAAGGA | 58.930 | 37.500 | 0.00 | 0.00 | 39.30 | 3.36 |
3704 | 3786 | 5.376854 | AGCAGCACATAAAAACTGTAAGG | 57.623 | 39.130 | 0.00 | 0.00 | 39.30 | 2.69 |
3705 | 3787 | 5.117592 | GCAAGCAGCACATAAAAACTGTAAG | 59.882 | 40.000 | 0.00 | 0.00 | 44.79 | 2.34 |
3706 | 3788 | 4.981674 | GCAAGCAGCACATAAAAACTGTAA | 59.018 | 37.500 | 0.00 | 0.00 | 44.79 | 2.41 |
3707 | 3789 | 4.545610 | GCAAGCAGCACATAAAAACTGTA | 58.454 | 39.130 | 0.00 | 0.00 | 44.79 | 2.74 |
3708 | 3790 | 3.383761 | GCAAGCAGCACATAAAAACTGT | 58.616 | 40.909 | 0.00 | 0.00 | 44.79 | 3.55 |
3772 | 3854 | 2.180432 | ATGATGTCAGATGCCGATGG | 57.820 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3774 | 3856 | 3.562973 | GTGAAATGATGTCAGATGCCGAT | 59.437 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
4362 | 5240 | 6.923508 | GCTAAGGTTTTGCAATACAGAAGTTT | 59.076 | 34.615 | 19.60 | 7.85 | 0.00 | 2.66 |
4574 | 5452 | 9.722056 | GCGACTGTATGATCTTCATAAAAATTT | 57.278 | 29.630 | 0.00 | 0.00 | 40.64 | 1.82 |
4575 | 5453 | 8.892723 | TGCGACTGTATGATCTTCATAAAAATT | 58.107 | 29.630 | 0.00 | 0.00 | 40.64 | 1.82 |
4577 | 5455 | 7.763985 | TCTGCGACTGTATGATCTTCATAAAAA | 59.236 | 33.333 | 0.00 | 0.00 | 40.64 | 1.94 |
4856 | 5734 | 4.212847 | CCAAATGGAGCTACAGAATGATCG | 59.787 | 45.833 | 4.19 | 0.00 | 37.05 | 3.69 |
5017 | 5895 | 5.738619 | AGTTTTGAAGTTTTGAACAGGGT | 57.261 | 34.783 | 0.00 | 0.00 | 0.00 | 4.34 |
5272 | 6158 | 2.102578 | GGCCTGCAGTATTTGGACATT | 58.897 | 47.619 | 13.81 | 0.00 | 0.00 | 2.71 |
5273 | 6159 | 1.686115 | GGGCCTGCAGTATTTGGACAT | 60.686 | 52.381 | 13.81 | 0.00 | 0.00 | 3.06 |
5274 | 6160 | 0.323360 | GGGCCTGCAGTATTTGGACA | 60.323 | 55.000 | 13.81 | 0.00 | 0.00 | 4.02 |
5647 | 6533 | 3.075005 | CCGTCGACAGGGACCCAT | 61.075 | 66.667 | 17.16 | 0.00 | 33.30 | 4.00 |
5725 | 6611 | 4.148825 | CCGGGAGCAGGTCTTCGG | 62.149 | 72.222 | 16.33 | 16.33 | 36.27 | 4.30 |
6083 | 6981 | 1.795286 | CAGGAAAGCACGACTTGAGAC | 59.205 | 52.381 | 0.00 | 0.00 | 39.09 | 3.36 |
6104 | 7002 | 3.055891 | GGTAGCAAAACCCATGCAAGATT | 60.056 | 43.478 | 0.00 | 0.00 | 46.22 | 2.40 |
6134 | 7038 | 3.035942 | CCACGCAAGAAAAGAAGAAACG | 58.964 | 45.455 | 0.00 | 0.00 | 43.62 | 3.60 |
6188 | 7092 | 1.143838 | CGCCATCAAGTCCCGATCA | 59.856 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
6206 | 7120 | 5.780793 | AGGAGTCATGTACCCCATATTAGTC | 59.219 | 44.000 | 0.00 | 0.00 | 30.71 | 2.59 |
6223 | 7137 | 9.739276 | ATATTTCAATTACAGTTTGAGGAGTCA | 57.261 | 29.630 | 0.00 | 0.00 | 34.76 | 3.41 |
6240 | 7154 | 8.240682 | TCAAACGTTCGATGGAAATATTTCAAT | 58.759 | 29.630 | 25.55 | 21.30 | 38.92 | 2.57 |
6243 | 7157 | 8.523464 | CAATCAAACGTTCGATGGAAATATTTC | 58.477 | 33.333 | 18.22 | 18.22 | 33.05 | 2.17 |
6260 | 7174 | 4.256920 | AGGAGAGTTCATCCAATCAAACG | 58.743 | 43.478 | 0.00 | 0.00 | 39.47 | 3.60 |
6290 | 7204 | 1.077716 | GGGATATGGCGTATGGGGC | 60.078 | 63.158 | 3.45 | 0.00 | 0.00 | 5.80 |
6291 | 7205 | 1.607612 | GGGGATATGGCGTATGGGG | 59.392 | 63.158 | 3.45 | 0.00 | 0.00 | 4.96 |
6292 | 7206 | 1.220749 | CGGGGATATGGCGTATGGG | 59.779 | 63.158 | 3.45 | 0.00 | 0.00 | 4.00 |
6293 | 7207 | 1.449601 | GCGGGGATATGGCGTATGG | 60.450 | 63.158 | 3.45 | 0.00 | 0.00 | 2.74 |
6294 | 7208 | 0.107703 | ATGCGGGGATATGGCGTATG | 60.108 | 55.000 | 3.45 | 0.00 | 0.00 | 2.39 |
6295 | 7209 | 1.491668 | TATGCGGGGATATGGCGTAT | 58.508 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6296 | 7210 | 1.491668 | ATATGCGGGGATATGGCGTA | 58.508 | 50.000 | 0.00 | 0.00 | 33.18 | 4.42 |
6299 | 7213 | 3.071602 | ACATCTATATGCGGGGATATGGC | 59.928 | 47.826 | 3.29 | 0.00 | 36.50 | 4.40 |
6305 | 7219 | 2.179427 | CTCCACATCTATATGCGGGGA | 58.821 | 52.381 | 0.00 | 0.00 | 37.93 | 4.81 |
6321 | 7235 | 2.159179 | TAGGTACAGCTGCATCTCCA | 57.841 | 50.000 | 15.27 | 0.00 | 0.00 | 3.86 |
6334 | 7248 | 5.745227 | CCATGGTGATGGGATTATAGGTAC | 58.255 | 45.833 | 2.57 | 0.00 | 45.11 | 3.34 |
6371 | 7288 | 1.473434 | GCTAGACCGTGAAATCCCAGG | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
6377 | 7294 | 2.165301 | GCGCGCTAGACCGTGAAAT | 61.165 | 57.895 | 26.67 | 0.00 | 40.91 | 2.17 |
6378 | 7295 | 2.807895 | GCGCGCTAGACCGTGAAA | 60.808 | 61.111 | 26.67 | 0.00 | 40.91 | 2.69 |
6379 | 7296 | 4.789075 | GGCGCGCTAGACCGTGAA | 62.789 | 66.667 | 32.29 | 0.00 | 40.91 | 3.18 |
6401 | 7318 | 4.473520 | AGCTTCGGCCCGTCATGG | 62.474 | 66.667 | 1.63 | 0.00 | 43.01 | 3.66 |
6402 | 7319 | 2.892425 | GAGCTTCGGCCCGTCATG | 60.892 | 66.667 | 1.63 | 0.00 | 43.01 | 3.07 |
6403 | 7320 | 4.514577 | CGAGCTTCGGCCCGTCAT | 62.515 | 66.667 | 1.63 | 0.00 | 43.01 | 3.06 |
6434 | 7351 | 1.283487 | CAACAATGCAGCAGCGTGA | 59.717 | 52.632 | 10.89 | 0.00 | 46.23 | 4.35 |
6440 | 7357 | 2.735883 | GCCACCAACAATGCAGCA | 59.264 | 55.556 | 0.00 | 0.00 | 0.00 | 4.41 |
6492 | 7409 | 3.244422 | TGGTATCAATGGAGGCGGTAATC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
6495 | 7412 | 1.414919 | GTGGTATCAATGGAGGCGGTA | 59.585 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
6496 | 7413 | 0.180406 | GTGGTATCAATGGAGGCGGT | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
6497 | 7414 | 0.180171 | TGTGGTATCAATGGAGGCGG | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
6498 | 7415 | 1.134401 | AGTGTGGTATCAATGGAGGCG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
6499 | 7416 | 2.292267 | CAGTGTGGTATCAATGGAGGC | 58.708 | 52.381 | 0.00 | 0.00 | 31.10 | 4.70 |
6500 | 7417 | 2.292267 | GCAGTGTGGTATCAATGGAGG | 58.708 | 52.381 | 0.00 | 0.00 | 34.58 | 4.30 |
6506 | 7423 | 1.376683 | GCGGGCAGTGTGGTATCAA | 60.377 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
6507 | 7424 | 2.267642 | GCGGGCAGTGTGGTATCA | 59.732 | 61.111 | 0.00 | 0.00 | 0.00 | 2.15 |
6522 | 7439 | 1.929836 | GATGTGTTGCTCTAGAAGGCG | 59.070 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
6565 | 7482 | 3.676324 | CGAATGCGTTTAGGGTCTCTCTT | 60.676 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
6566 | 7483 | 2.159226 | CGAATGCGTTTAGGGTCTCTCT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
6572 | 7489 | 0.107848 | CCTCCGAATGCGTTTAGGGT | 60.108 | 55.000 | 12.38 | 0.00 | 35.23 | 4.34 |
6581 | 7498 | 1.202348 | CCCTCAAAAACCTCCGAATGC | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
6584 | 7501 | 2.578786 | GTTCCCTCAAAAACCTCCGAA | 58.421 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
6609 | 7689 | 1.392710 | CCACCCCCTAGCTACAGACG | 61.393 | 65.000 | 0.00 | 0.00 | 0.00 | 4.18 |
6611 | 7691 | 0.032416 | GTCCACCCCCTAGCTACAGA | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6612 | 7692 | 0.325296 | TGTCCACCCCCTAGCTACAG | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6613 | 7693 | 0.325296 | CTGTCCACCCCCTAGCTACA | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6614 | 7694 | 1.049289 | CCTGTCCACCCCCTAGCTAC | 61.049 | 65.000 | 0.00 | 0.00 | 0.00 | 3.58 |
6615 | 7695 | 1.313475 | CCTGTCCACCCCCTAGCTA | 59.687 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
6616 | 7696 | 2.041265 | CCTGTCCACCCCCTAGCT | 59.959 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
6617 | 7697 | 3.090532 | CCCTGTCCACCCCCTAGC | 61.091 | 72.222 | 0.00 | 0.00 | 0.00 | 3.42 |
6619 | 7699 | 2.124085 | CACCCTGTCCACCCCCTA | 59.876 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
6629 | 7709 | 3.495729 | GTCCATGGACCACCCTGT | 58.504 | 61.111 | 31.37 | 0.00 | 39.08 | 4.00 |
6637 | 7717 | 2.806945 | TTTCAGGATGGTCCATGGAC | 57.193 | 50.000 | 33.14 | 33.14 | 39.61 | 4.02 |
6638 | 7718 | 4.280819 | GAATTTTCAGGATGGTCCATGGA | 58.719 | 43.478 | 11.44 | 11.44 | 39.61 | 3.41 |
6639 | 7719 | 3.385755 | GGAATTTTCAGGATGGTCCATGG | 59.614 | 47.826 | 9.76 | 4.97 | 39.61 | 3.66 |
6640 | 7720 | 3.385755 | GGGAATTTTCAGGATGGTCCATG | 59.614 | 47.826 | 9.76 | 0.00 | 39.61 | 3.66 |
6641 | 7721 | 3.630828 | GGGGAATTTTCAGGATGGTCCAT | 60.631 | 47.826 | 3.26 | 3.26 | 39.61 | 3.41 |
6642 | 7722 | 2.292192 | GGGGAATTTTCAGGATGGTCCA | 60.292 | 50.000 | 0.00 | 0.00 | 39.61 | 4.02 |
6643 | 7723 | 2.388735 | GGGGAATTTTCAGGATGGTCC | 58.611 | 52.381 | 0.00 | 0.00 | 36.16 | 4.46 |
6644 | 7724 | 2.292192 | TGGGGGAATTTTCAGGATGGTC | 60.292 | 50.000 | 0.00 | 0.00 | 36.16 | 4.02 |
6645 | 7725 | 1.721691 | TGGGGGAATTTTCAGGATGGT | 59.278 | 47.619 | 0.00 | 0.00 | 36.16 | 3.55 |
6646 | 7726 | 2.548464 | TGGGGGAATTTTCAGGATGG | 57.452 | 50.000 | 0.00 | 0.00 | 36.16 | 3.51 |
6647 | 7727 | 3.575687 | GCTATGGGGGAATTTTCAGGATG | 59.424 | 47.826 | 0.00 | 0.00 | 37.54 | 3.51 |
6648 | 7728 | 3.438520 | GGCTATGGGGGAATTTTCAGGAT | 60.439 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
6649 | 7729 | 2.091333 | GGCTATGGGGGAATTTTCAGGA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6650 | 7730 | 2.319844 | GGCTATGGGGGAATTTTCAGG | 58.680 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
6651 | 7731 | 3.030873 | TGGCTATGGGGGAATTTTCAG | 57.969 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
6652 | 7732 | 3.481559 | TTGGCTATGGGGGAATTTTCA | 57.518 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
6653 | 7733 | 7.978099 | ATATATTGGCTATGGGGGAATTTTC | 57.022 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6654 | 7734 | 8.067488 | CCTATATATTGGCTATGGGGGAATTTT | 58.933 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
6655 | 7735 | 7.188267 | ACCTATATATTGGCTATGGGGGAATTT | 59.812 | 37.037 | 12.51 | 0.00 | 32.93 | 1.82 |
6656 | 7736 | 6.687415 | ACCTATATATTGGCTATGGGGGAATT | 59.313 | 38.462 | 12.51 | 0.00 | 32.93 | 2.17 |
6657 | 7737 | 6.227966 | ACCTATATATTGGCTATGGGGGAAT | 58.772 | 40.000 | 12.51 | 0.00 | 32.93 | 3.01 |
6658 | 7738 | 5.619926 | ACCTATATATTGGCTATGGGGGAA | 58.380 | 41.667 | 12.51 | 0.00 | 32.93 | 3.97 |
6659 | 7739 | 5.249301 | ACCTATATATTGGCTATGGGGGA | 57.751 | 43.478 | 12.51 | 0.00 | 32.93 | 4.81 |
6660 | 7740 | 5.994416 | AACCTATATATTGGCTATGGGGG | 57.006 | 43.478 | 12.51 | 0.00 | 32.93 | 5.40 |
6661 | 7741 | 7.931015 | TCTAACCTATATATTGGCTATGGGG | 57.069 | 40.000 | 12.51 | 0.00 | 32.93 | 4.96 |
6712 | 7792 | 9.332301 | CCAACAATGAAAATTTGCATGTAATTC | 57.668 | 29.630 | 12.58 | 0.00 | 0.00 | 2.17 |
6713 | 7793 | 9.064706 | TCCAACAATGAAAATTTGCATGTAATT | 57.935 | 25.926 | 12.58 | 2.64 | 0.00 | 1.40 |
6714 | 7794 | 8.505625 | GTCCAACAATGAAAATTTGCATGTAAT | 58.494 | 29.630 | 12.58 | 0.00 | 0.00 | 1.89 |
6715 | 7795 | 7.041508 | GGTCCAACAATGAAAATTTGCATGTAA | 60.042 | 33.333 | 12.58 | 0.00 | 0.00 | 2.41 |
6716 | 7796 | 6.426328 | GGTCCAACAATGAAAATTTGCATGTA | 59.574 | 34.615 | 12.58 | 0.00 | 0.00 | 2.29 |
6717 | 7797 | 5.239087 | GGTCCAACAATGAAAATTTGCATGT | 59.761 | 36.000 | 12.58 | 9.78 | 0.00 | 3.21 |
6718 | 7798 | 5.238868 | TGGTCCAACAATGAAAATTTGCATG | 59.761 | 36.000 | 12.58 | 9.20 | 0.00 | 4.06 |
6719 | 7799 | 5.239087 | GTGGTCCAACAATGAAAATTTGCAT | 59.761 | 36.000 | 5.77 | 5.77 | 0.00 | 3.96 |
6720 | 7800 | 4.574013 | GTGGTCCAACAATGAAAATTTGCA | 59.426 | 37.500 | 0.07 | 0.07 | 0.00 | 4.08 |
6721 | 7801 | 4.024133 | GGTGGTCCAACAATGAAAATTTGC | 60.024 | 41.667 | 0.61 | 0.00 | 0.00 | 3.68 |
6722 | 7802 | 4.514816 | GGGTGGTCCAACAATGAAAATTTG | 59.485 | 41.667 | 9.70 | 0.00 | 35.00 | 2.32 |
6723 | 7803 | 4.411869 | AGGGTGGTCCAACAATGAAAATTT | 59.588 | 37.500 | 9.70 | 0.00 | 38.24 | 1.82 |
6724 | 7804 | 3.973305 | AGGGTGGTCCAACAATGAAAATT | 59.027 | 39.130 | 9.70 | 0.00 | 38.24 | 1.82 |
6725 | 7805 | 3.324556 | CAGGGTGGTCCAACAATGAAAAT | 59.675 | 43.478 | 9.70 | 0.00 | 38.24 | 1.82 |
6726 | 7806 | 2.697751 | CAGGGTGGTCCAACAATGAAAA | 59.302 | 45.455 | 9.70 | 0.00 | 38.24 | 2.29 |
6727 | 7807 | 2.315176 | CAGGGTGGTCCAACAATGAAA | 58.685 | 47.619 | 9.70 | 0.00 | 38.24 | 2.69 |
6728 | 7808 | 1.480312 | CCAGGGTGGTCCAACAATGAA | 60.480 | 52.381 | 9.70 | 0.00 | 38.24 | 2.57 |
6729 | 7809 | 0.112218 | CCAGGGTGGTCCAACAATGA | 59.888 | 55.000 | 9.70 | 0.00 | 38.24 | 2.57 |
6730 | 7810 | 1.535204 | GCCAGGGTGGTCCAACAATG | 61.535 | 60.000 | 9.70 | 6.81 | 40.46 | 2.82 |
6731 | 7811 | 1.228862 | GCCAGGGTGGTCCAACAAT | 60.229 | 57.895 | 9.70 | 0.00 | 40.46 | 2.71 |
6732 | 7812 | 2.197324 | GCCAGGGTGGTCCAACAA | 59.803 | 61.111 | 9.70 | 0.00 | 40.46 | 2.83 |
6733 | 7813 | 2.776526 | AGCCAGGGTGGTCCAACA | 60.777 | 61.111 | 9.70 | 0.00 | 40.46 | 3.33 |
6734 | 7814 | 2.034221 | GAGCCAGGGTGGTCCAAC | 59.966 | 66.667 | 0.00 | 0.00 | 40.46 | 3.77 |
6735 | 7815 | 2.449518 | TGAGCCAGGGTGGTCCAA | 60.450 | 61.111 | 0.00 | 0.00 | 40.46 | 3.53 |
6736 | 7816 | 3.249189 | GTGAGCCAGGGTGGTCCA | 61.249 | 66.667 | 0.00 | 0.00 | 40.46 | 4.02 |
6737 | 7817 | 4.035102 | GGTGAGCCAGGGTGGTCC | 62.035 | 72.222 | 0.00 | 0.00 | 40.46 | 4.46 |
6738 | 7818 | 4.394712 | CGGTGAGCCAGGGTGGTC | 62.395 | 72.222 | 0.00 | 0.00 | 40.46 | 4.02 |
6739 | 7819 | 4.954118 | TCGGTGAGCCAGGGTGGT | 62.954 | 66.667 | 0.00 | 0.00 | 40.46 | 4.16 |
6740 | 7820 | 4.087892 | CTCGGTGAGCCAGGGTGG | 62.088 | 72.222 | 0.00 | 0.00 | 41.55 | 4.61 |
6749 | 7829 | 2.103143 | CGTAGCCAGCTCGGTGAG | 59.897 | 66.667 | 0.00 | 0.00 | 36.97 | 3.51 |
6750 | 7830 | 2.675423 | ACGTAGCCAGCTCGGTGA | 60.675 | 61.111 | 13.37 | 0.00 | 36.97 | 4.02 |
6751 | 7831 | 2.202623 | GACGTAGCCAGCTCGGTG | 60.203 | 66.667 | 13.37 | 0.00 | 36.97 | 4.94 |
6752 | 7832 | 1.605058 | AATGACGTAGCCAGCTCGGT | 61.605 | 55.000 | 13.37 | 5.99 | 36.97 | 4.69 |
6753 | 7833 | 0.460284 | AAATGACGTAGCCAGCTCGG | 60.460 | 55.000 | 13.37 | 0.00 | 38.11 | 4.63 |
6754 | 7834 | 1.852895 | GTAAATGACGTAGCCAGCTCG | 59.147 | 52.381 | 0.00 | 2.73 | 0.00 | 5.03 |
6755 | 7835 | 2.888594 | TGTAAATGACGTAGCCAGCTC | 58.111 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
6756 | 7836 | 3.543680 | ATGTAAATGACGTAGCCAGCT | 57.456 | 42.857 | 0.00 | 0.00 | 0.00 | 4.24 |
6757 | 7837 | 4.616181 | AAATGTAAATGACGTAGCCAGC | 57.384 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
6758 | 7838 | 6.176975 | TGAAAATGTAAATGACGTAGCCAG | 57.823 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
6759 | 7839 | 6.348950 | CCTTGAAAATGTAAATGACGTAGCCA | 60.349 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
6760 | 7840 | 6.027749 | CCTTGAAAATGTAAATGACGTAGCC | 58.972 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
6761 | 7841 | 6.608610 | ACCTTGAAAATGTAAATGACGTAGC | 58.391 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
6762 | 7842 | 8.932791 | AGTACCTTGAAAATGTAAATGACGTAG | 58.067 | 33.333 | 0.00 | 0.00 | 28.79 | 3.51 |
6763 | 7843 | 8.836268 | AGTACCTTGAAAATGTAAATGACGTA | 57.164 | 30.769 | 0.00 | 0.00 | 28.79 | 3.57 |
6764 | 7844 | 7.442969 | TGAGTACCTTGAAAATGTAAATGACGT | 59.557 | 33.333 | 0.00 | 0.00 | 28.79 | 4.34 |
6765 | 7845 | 7.802738 | TGAGTACCTTGAAAATGTAAATGACG | 58.197 | 34.615 | 0.00 | 0.00 | 28.79 | 4.35 |
6876 | 7956 | 8.783093 | CGATTCCATGTTAATATTAGGCAAGAA | 58.217 | 33.333 | 13.69 | 13.69 | 0.00 | 2.52 |
6916 | 7996 | 2.777832 | AAGCAGCTACCCTTCTTCTG | 57.222 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
6922 | 8003 | 1.981495 | ACTGAGAAAGCAGCTACCCTT | 59.019 | 47.619 | 0.00 | 0.00 | 39.51 | 3.95 |
6925 | 8006 | 2.072298 | CACACTGAGAAAGCAGCTACC | 58.928 | 52.381 | 0.00 | 0.00 | 39.51 | 3.18 |
6968 | 8049 | 0.461163 | TCACGCGGATACCATTGGTG | 60.461 | 55.000 | 18.83 | 2.51 | 36.19 | 4.17 |
6969 | 8050 | 0.250793 | TTCACGCGGATACCATTGGT | 59.749 | 50.000 | 13.94 | 13.94 | 40.16 | 3.67 |
6970 | 8051 | 1.063469 | GTTTCACGCGGATACCATTGG | 59.937 | 52.381 | 12.47 | 0.00 | 0.00 | 3.16 |
6971 | 8052 | 1.063469 | GGTTTCACGCGGATACCATTG | 59.937 | 52.381 | 22.53 | 7.36 | 44.40 | 2.82 |
6972 | 8053 | 1.375551 | GGTTTCACGCGGATACCATT | 58.624 | 50.000 | 22.53 | 0.00 | 44.40 | 3.16 |
6973 | 8054 | 0.463116 | GGGTTTCACGCGGATACCAT | 60.463 | 55.000 | 25.89 | 0.00 | 46.15 | 3.55 |
6974 | 8055 | 1.078988 | GGGTTTCACGCGGATACCA | 60.079 | 57.895 | 25.89 | 1.35 | 46.15 | 3.25 |
6975 | 8056 | 0.674269 | TTGGGTTTCACGCGGATACC | 60.674 | 55.000 | 20.67 | 20.67 | 44.30 | 2.73 |
6976 | 8057 | 1.158434 | TTTGGGTTTCACGCGGATAC | 58.842 | 50.000 | 12.47 | 10.08 | 33.25 | 2.24 |
6977 | 8058 | 1.893544 | TTTTGGGTTTCACGCGGATA | 58.106 | 45.000 | 12.47 | 0.00 | 33.25 | 2.59 |
6978 | 8059 | 1.033574 | TTTTTGGGTTTCACGCGGAT | 58.966 | 45.000 | 12.47 | 0.00 | 33.25 | 4.18 |
6979 | 8060 | 0.100861 | GTTTTTGGGTTTCACGCGGA | 59.899 | 50.000 | 12.47 | 1.33 | 33.25 | 5.54 |
6980 | 8061 | 0.101579 | AGTTTTTGGGTTTCACGCGG | 59.898 | 50.000 | 12.47 | 0.00 | 33.25 | 6.46 |
6993 | 8074 | 6.293900 | CCTGTTTGGTTTGCTTTTGAGTTTTT | 60.294 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.