Multiple sequence alignment - TraesCS7D01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G265800 chr7D 100.000 3812 0 0 1 3812 247328315 247324504 0.000000e+00 7040
1 TraesCS7D01G265800 chr7D 81.776 642 100 11 87 713 143930551 143931190 4.360000e-144 521
2 TraesCS7D01G265800 chr7D 95.349 86 4 0 2 87 119884284 119884369 1.850000e-28 137
3 TraesCS7D01G265800 chr7D 95.294 85 4 0 2 86 479423102 479423018 6.640000e-28 135
4 TraesCS7D01G265800 chr7A 94.303 2949 112 17 898 3812 264859638 264856712 0.000000e+00 4464
5 TraesCS7D01G265800 chr7A 81.788 604 81 19 87 673 136276557 136277148 2.660000e-131 479
6 TraesCS7D01G265800 chr7A 84.615 130 15 5 3684 3811 264857208 264857082 1.440000e-24 124
7 TraesCS7D01G265800 chr7B 95.254 2634 80 12 941 3545 223757929 223755312 0.000000e+00 4130
8 TraesCS7D01G265800 chr7B 89.236 288 23 4 3531 3812 223755296 223755011 1.680000e-93 353
9 TraesCS7D01G265800 chr7B 85.385 130 14 5 3684 3811 223755536 223755410 3.090000e-26 130
10 TraesCS7D01G265800 chr2D 83.087 609 86 14 87 680 386542027 386541421 4.330000e-149 538
11 TraesCS7D01G265800 chr3B 81.123 641 99 12 87 713 174934952 174934320 9.510000e-136 494
12 TraesCS7D01G265800 chr3A 79.585 627 105 15 102 714 8347504 8348121 9.790000e-116 427
13 TraesCS7D01G265800 chr5D 87.135 342 40 4 87 424 227018654 227018995 5.970000e-103 385
14 TraesCS7D01G265800 chr5D 79.811 317 58 5 87 398 243234582 243234897 3.830000e-55 226
15 TraesCS7D01G265800 chr4D 77.974 622 122 11 91 698 501722867 501722247 3.600000e-100 375
16 TraesCS7D01G265800 chr4D 95.238 84 4 0 2 85 212467521 212467438 2.390000e-27 134
17 TraesCS7D01G265800 chr4D 95.238 84 2 2 13 94 328813766 328813683 8.590000e-27 132
18 TraesCS7D01G265800 chr4D 90.625 96 8 1 1 96 349237353 349237259 4.000000e-25 126
19 TraesCS7D01G265800 chr2B 80.702 342 56 9 87 422 432871657 432871320 1.360000e-64 257
20 TraesCS7D01G265800 chr1D 96.386 83 3 0 2 84 423307736 423307818 1.850000e-28 137
21 TraesCS7D01G265800 chr1B 95.238 84 4 0 1 84 687400006 687399923 2.390000e-27 134
22 TraesCS7D01G265800 chr5A 94.186 86 5 0 2 87 576589585 576589670 8.590000e-27 132
23 TraesCS7D01G265800 chr4A 94.118 85 5 0 2 86 118911932 118911848 3.090000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G265800 chr7D 247324504 247328315 3811 True 7040.000000 7040 100.000000 1 3812 1 chr7D.!!$R1 3811
1 TraesCS7D01G265800 chr7D 143930551 143931190 639 False 521.000000 521 81.776000 87 713 1 chr7D.!!$F2 626
2 TraesCS7D01G265800 chr7A 264856712 264859638 2926 True 2294.000000 4464 89.459000 898 3812 2 chr7A.!!$R1 2914
3 TraesCS7D01G265800 chr7A 136276557 136277148 591 False 479.000000 479 81.788000 87 673 1 chr7A.!!$F1 586
4 TraesCS7D01G265800 chr7B 223755011 223757929 2918 True 1537.666667 4130 89.958333 941 3812 3 chr7B.!!$R1 2871
5 TraesCS7D01G265800 chr2D 386541421 386542027 606 True 538.000000 538 83.087000 87 680 1 chr2D.!!$R1 593
6 TraesCS7D01G265800 chr3B 174934320 174934952 632 True 494.000000 494 81.123000 87 713 1 chr3B.!!$R1 626
7 TraesCS7D01G265800 chr3A 8347504 8348121 617 False 427.000000 427 79.585000 102 714 1 chr3A.!!$F1 612
8 TraesCS7D01G265800 chr4D 501722247 501722867 620 True 375.000000 375 77.974000 91 698 1 chr4D.!!$R4 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036875 CTCTGTGTTCCCTGTTCCCC 59.963 60.0 0.00 0.00 0.00 4.81 F
637 655 0.111639 TGTAACCACTTGGCTTCCCC 59.888 55.0 0.00 0.00 39.32 4.81 F
2311 2329 0.103026 TCTGATTGATGAGGGACGCG 59.897 55.0 3.53 3.53 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 1630 1.667154 TTCCTCTCCGGCATCGTCTG 61.667 60.000 0.00 0.0 33.95 3.51 R
2367 2385 1.227527 CAAGTCCACCACGCACAGA 60.228 57.895 0.00 0.0 0.00 3.41 R
3405 3437 0.398381 AAGGGCCAAGAGCAACCAAA 60.398 50.000 6.18 0.0 46.50 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.918712 CTGTCTCTGTGTTCCCTGTT 57.081 50.000 0.00 0.00 0.00 3.16
20 21 2.760374 CTGTCTCTGTGTTCCCTGTTC 58.240 52.381 0.00 0.00 0.00 3.18
21 22 1.416401 TGTCTCTGTGTTCCCTGTTCC 59.584 52.381 0.00 0.00 0.00 3.62
22 23 1.056660 TCTCTGTGTTCCCTGTTCCC 58.943 55.000 0.00 0.00 0.00 3.97
23 24 0.036875 CTCTGTGTTCCCTGTTCCCC 59.963 60.000 0.00 0.00 0.00 4.81
24 25 0.696143 TCTGTGTTCCCTGTTCCCCA 60.696 55.000 0.00 0.00 0.00 4.96
25 26 0.405585 CTGTGTTCCCTGTTCCCCAT 59.594 55.000 0.00 0.00 0.00 4.00
26 27 0.856982 TGTGTTCCCTGTTCCCCATT 59.143 50.000 0.00 0.00 0.00 3.16
27 28 1.256812 GTGTTCCCTGTTCCCCATTG 58.743 55.000 0.00 0.00 0.00 2.82
28 29 1.153539 TGTTCCCTGTTCCCCATTGA 58.846 50.000 0.00 0.00 0.00 2.57
29 30 1.715931 TGTTCCCTGTTCCCCATTGAT 59.284 47.619 0.00 0.00 0.00 2.57
30 31 2.291540 TGTTCCCTGTTCCCCATTGATC 60.292 50.000 0.00 0.00 0.00 2.92
31 32 0.926293 TCCCTGTTCCCCATTGATCC 59.074 55.000 0.00 0.00 0.00 3.36
32 33 0.630673 CCCTGTTCCCCATTGATCCA 59.369 55.000 0.00 0.00 0.00 3.41
33 34 1.006998 CCCTGTTCCCCATTGATCCAA 59.993 52.381 0.00 0.00 0.00 3.53
34 35 2.381911 CCTGTTCCCCATTGATCCAAG 58.618 52.381 0.00 0.00 0.00 3.61
35 36 2.025037 CCTGTTCCCCATTGATCCAAGA 60.025 50.000 0.00 0.00 0.00 3.02
36 37 3.373438 CCTGTTCCCCATTGATCCAAGAT 60.373 47.826 0.00 0.00 0.00 2.40
37 38 3.887716 CTGTTCCCCATTGATCCAAGATC 59.112 47.826 0.00 0.00 0.00 2.75
38 39 3.225940 GTTCCCCATTGATCCAAGATCC 58.774 50.000 2.29 0.00 0.00 3.36
39 40 2.501667 TCCCCATTGATCCAAGATCCA 58.498 47.619 2.29 0.00 0.00 3.41
40 41 2.175499 TCCCCATTGATCCAAGATCCAC 59.825 50.000 2.29 0.00 0.00 4.02
41 42 2.224606 CCCATTGATCCAAGATCCACG 58.775 52.381 2.29 0.00 0.00 4.94
42 43 2.224606 CCATTGATCCAAGATCCACGG 58.775 52.381 2.29 0.00 0.00 4.94
43 44 1.605710 CATTGATCCAAGATCCACGGC 59.394 52.381 2.29 0.00 0.00 5.68
44 45 0.911769 TTGATCCAAGATCCACGGCT 59.088 50.000 2.29 0.00 0.00 5.52
45 46 0.465705 TGATCCAAGATCCACGGCTC 59.534 55.000 2.29 0.00 0.00 4.70
46 47 0.598680 GATCCAAGATCCACGGCTCG 60.599 60.000 0.00 0.00 0.00 5.03
47 48 2.032860 ATCCAAGATCCACGGCTCGG 62.033 60.000 0.00 0.00 0.00 4.63
48 49 2.202932 CAAGATCCACGGCTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
49 50 2.363795 AAGATCCACGGCTCGGGA 60.364 61.111 0.00 3.47 37.64 5.14
50 51 2.722201 AAGATCCACGGCTCGGGAC 61.722 63.158 0.00 0.00 35.67 4.46
51 52 4.222847 GATCCACGGCTCGGGACC 62.223 72.222 0.00 0.00 35.67 4.46
63 64 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
64 65 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
65 66 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
66 67 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
67 68 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
68 69 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
69 70 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
70 71 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
71 72 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
72 73 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
74 75 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
75 76 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
76 77 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
77 78 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
78 79 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
79 80 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
80 81 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
81 82 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
140 143 9.807649 ATGCATATTTTTATCCAACTTTGAGTC 57.192 29.630 0.00 0.00 0.00 3.36
150 153 2.951642 CAACTTTGAGTCTGGCTTGGAA 59.048 45.455 0.00 0.00 0.00 3.53
158 161 2.887152 AGTCTGGCTTGGAATTGTTGAC 59.113 45.455 0.00 0.00 0.00 3.18
285 292 0.318699 TGGTGCTTCGAGTTCGTCTG 60.319 55.000 1.07 0.00 40.80 3.51
343 350 1.879380 CTTCACCAACCATGAAGCGAA 59.121 47.619 0.00 0.00 44.77 4.70
356 363 6.151691 CCATGAAGCGAAGAAGAAATTTCAA 58.848 36.000 19.99 0.00 0.00 2.69
371 378 6.865205 AGAAATTTCAAATGCTCAGTACAAGC 59.135 34.615 19.99 12.06 40.26 4.01
436 451 7.968405 CGCTAAGCTAGGTAAATTTCAATTTGT 59.032 33.333 7.63 0.00 38.90 2.83
466 481 2.080693 ACGCCGAGTTGCATCATTTTA 58.919 42.857 0.00 0.00 0.00 1.52
481 496 6.815142 GCATCATTTTATTTATCAGGGATGGC 59.185 38.462 0.00 0.00 32.42 4.40
483 498 8.537016 CATCATTTTATTTATCAGGGATGGCAT 58.463 33.333 0.00 0.00 0.00 4.40
507 522 4.093408 ACATATGAACGCATGACACTTGAC 59.907 41.667 10.38 0.00 35.94 3.18
517 532 5.613360 CGCATGACACTTGACTTTCTTAGTG 60.613 44.000 0.00 0.00 42.75 2.74
549 566 6.541969 GCATAATGTTGGTTTAATGCCAAAC 58.458 36.000 11.97 8.36 46.21 2.93
550 567 6.148480 GCATAATGTTGGTTTAATGCCAAACA 59.852 34.615 11.97 12.17 46.21 2.83
558 576 7.946381 TGGTTTAATGCCAAACACATATAGA 57.054 32.000 7.65 0.00 39.65 1.98
585 603 3.594603 GGATCAGTTTCCGTCTCTTGA 57.405 47.619 0.00 0.00 0.00 3.02
599 617 4.752101 CGTCTCTTGAACCAAGACTTCAAT 59.248 41.667 5.38 0.00 44.27 2.57
610 628 5.419155 ACCAAGACTTCAATATCACTCTCGA 59.581 40.000 0.00 0.00 0.00 4.04
611 629 6.097554 ACCAAGACTTCAATATCACTCTCGAT 59.902 38.462 0.00 0.00 0.00 3.59
612 630 6.420306 CCAAGACTTCAATATCACTCTCGATG 59.580 42.308 0.00 0.00 0.00 3.84
613 631 6.951062 AGACTTCAATATCACTCTCGATGA 57.049 37.500 0.00 0.00 0.00 2.92
625 643 4.174411 CTCTCGATGAGTGTTGTAACCA 57.826 45.455 0.00 0.00 37.99 3.67
626 644 3.909430 TCTCGATGAGTGTTGTAACCAC 58.091 45.455 0.00 0.00 0.00 4.16
627 645 3.572682 TCTCGATGAGTGTTGTAACCACT 59.427 43.478 0.00 0.00 0.00 4.00
628 646 4.038763 TCTCGATGAGTGTTGTAACCACTT 59.961 41.667 0.00 0.00 0.00 3.16
629 647 4.055360 TCGATGAGTGTTGTAACCACTTG 58.945 43.478 0.00 0.00 0.00 3.16
630 648 3.186409 CGATGAGTGTTGTAACCACTTGG 59.814 47.826 0.00 0.00 42.17 3.61
631 649 2.294074 TGAGTGTTGTAACCACTTGGC 58.706 47.619 0.00 0.00 39.32 4.52
632 650 2.092646 TGAGTGTTGTAACCACTTGGCT 60.093 45.455 0.00 0.00 39.32 4.75
633 651 2.949644 GAGTGTTGTAACCACTTGGCTT 59.050 45.455 0.00 0.00 39.32 4.35
634 652 2.949644 AGTGTTGTAACCACTTGGCTTC 59.050 45.455 0.00 0.00 39.32 3.86
635 653 2.034179 GTGTTGTAACCACTTGGCTTCC 59.966 50.000 0.00 0.00 39.32 3.46
636 654 1.611977 GTTGTAACCACTTGGCTTCCC 59.388 52.381 0.00 0.00 39.32 3.97
637 655 0.111639 TGTAACCACTTGGCTTCCCC 59.888 55.000 0.00 0.00 39.32 4.81
638 656 0.111639 GTAACCACTTGGCTTCCCCA 59.888 55.000 0.00 0.00 43.51 4.96
648 666 3.464720 TGGCTTCCCCAACAATGATAA 57.535 42.857 0.00 0.00 41.82 1.75
649 667 3.992999 TGGCTTCCCCAACAATGATAAT 58.007 40.909 0.00 0.00 41.82 1.28
650 668 3.705579 TGGCTTCCCCAACAATGATAATG 59.294 43.478 0.00 0.00 41.82 1.90
651 669 3.960102 GGCTTCCCCAACAATGATAATGA 59.040 43.478 0.00 0.00 0.00 2.57
652 670 4.590222 GGCTTCCCCAACAATGATAATGAT 59.410 41.667 0.00 0.00 0.00 2.45
653 671 5.279156 GGCTTCCCCAACAATGATAATGATC 60.279 44.000 0.00 0.00 0.00 2.92
654 672 5.537674 GCTTCCCCAACAATGATAATGATCT 59.462 40.000 0.00 0.00 32.79 2.75
655 673 6.041296 GCTTCCCCAACAATGATAATGATCTT 59.959 38.462 0.00 0.00 32.79 2.40
656 674 7.418254 GCTTCCCCAACAATGATAATGATCTTT 60.418 37.037 0.00 0.00 32.79 2.52
657 675 7.350744 TCCCCAACAATGATAATGATCTTTG 57.649 36.000 14.44 14.44 45.85 2.77
658 676 7.124721 TCCCCAACAATGATAATGATCTTTGA 58.875 34.615 20.46 0.30 44.38 2.69
659 677 7.785985 TCCCCAACAATGATAATGATCTTTGAT 59.214 33.333 20.46 9.73 44.38 2.57
660 678 9.081204 CCCCAACAATGATAATGATCTTTGATA 57.919 33.333 20.46 0.00 44.38 2.15
683 701 9.282247 GATATGTTTATGATTTCATTGATCCGC 57.718 33.333 0.00 0.00 37.76 5.54
684 702 6.448207 TGTTTATGATTTCATTGATCCGCA 57.552 33.333 0.00 0.00 37.76 5.69
685 703 7.041635 TGTTTATGATTTCATTGATCCGCAT 57.958 32.000 0.00 0.00 37.76 4.73
686 704 7.140705 TGTTTATGATTTCATTGATCCGCATC 58.859 34.615 0.00 0.00 37.76 3.91
687 705 7.013559 TGTTTATGATTTCATTGATCCGCATCT 59.986 33.333 0.00 0.00 37.76 2.90
688 706 8.506437 GTTTATGATTTCATTGATCCGCATCTA 58.494 33.333 0.00 0.00 37.76 1.98
689 707 8.620116 TTATGATTTCATTGATCCGCATCTAA 57.380 30.769 0.00 0.00 37.76 2.10
690 708 6.549912 TGATTTCATTGATCCGCATCTAAG 57.450 37.500 0.00 0.00 0.00 2.18
691 709 5.471116 TGATTTCATTGATCCGCATCTAAGG 59.529 40.000 0.00 0.00 0.00 2.69
692 710 2.771089 TCATTGATCCGCATCTAAGGC 58.229 47.619 0.00 0.00 0.00 4.35
693 711 2.104622 TCATTGATCCGCATCTAAGGCA 59.895 45.455 0.00 0.00 0.00 4.75
694 712 2.708216 TTGATCCGCATCTAAGGCAA 57.292 45.000 0.00 0.00 0.00 4.52
695 713 2.936919 TGATCCGCATCTAAGGCAAT 57.063 45.000 0.00 0.00 0.00 3.56
696 714 2.771089 TGATCCGCATCTAAGGCAATC 58.229 47.619 0.00 0.00 0.00 2.67
697 715 2.079925 GATCCGCATCTAAGGCAATCC 58.920 52.381 0.00 0.00 0.00 3.01
698 716 0.249868 TCCGCATCTAAGGCAATCCG 60.250 55.000 0.00 0.00 37.47 4.18
699 717 0.532862 CCGCATCTAAGGCAATCCGT 60.533 55.000 0.00 0.00 37.47 4.69
700 718 0.861837 CGCATCTAAGGCAATCCGTC 59.138 55.000 0.00 0.00 37.47 4.79
701 719 1.806247 CGCATCTAAGGCAATCCGTCA 60.806 52.381 0.00 0.00 37.47 4.35
702 720 2.288666 GCATCTAAGGCAATCCGTCAA 58.711 47.619 0.00 0.00 37.47 3.18
703 721 2.032178 GCATCTAAGGCAATCCGTCAAC 59.968 50.000 0.00 0.00 37.47 3.18
704 722 2.396590 TCTAAGGCAATCCGTCAACC 57.603 50.000 0.00 0.00 37.47 3.77
705 723 1.626321 TCTAAGGCAATCCGTCAACCA 59.374 47.619 0.00 0.00 37.47 3.67
706 724 2.039216 TCTAAGGCAATCCGTCAACCAA 59.961 45.455 0.00 0.00 37.47 3.67
707 725 1.698506 AAGGCAATCCGTCAACCAAA 58.301 45.000 0.00 0.00 37.47 3.28
708 726 1.923356 AGGCAATCCGTCAACCAAAT 58.077 45.000 0.00 0.00 37.47 2.32
709 727 1.545582 AGGCAATCCGTCAACCAAATG 59.454 47.619 0.00 0.00 37.47 2.32
710 728 1.543802 GGCAATCCGTCAACCAAATGA 59.456 47.619 0.00 0.00 0.00 2.57
711 729 2.415893 GGCAATCCGTCAACCAAATGAG 60.416 50.000 0.00 0.00 0.00 2.90
712 730 2.228822 GCAATCCGTCAACCAAATGAGT 59.771 45.455 0.00 0.00 0.00 3.41
713 731 3.825308 CAATCCGTCAACCAAATGAGTG 58.175 45.455 0.00 0.00 0.00 3.51
714 732 1.890876 TCCGTCAACCAAATGAGTGG 58.109 50.000 0.00 0.00 44.92 4.00
726 744 6.573664 CCAAATGAGTGGTCATGACTAAAA 57.426 37.500 24.50 8.75 43.04 1.52
727 745 6.980593 CCAAATGAGTGGTCATGACTAAAAA 58.019 36.000 24.50 8.41 43.04 1.94
728 746 7.086376 CCAAATGAGTGGTCATGACTAAAAAG 58.914 38.462 24.50 6.54 43.04 2.27
729 747 7.040478 CCAAATGAGTGGTCATGACTAAAAAGA 60.040 37.037 24.50 3.34 43.04 2.52
730 748 8.352201 CAAATGAGTGGTCATGACTAAAAAGAA 58.648 33.333 24.50 3.67 43.04 2.52
731 749 8.463930 AATGAGTGGTCATGACTAAAAAGAAA 57.536 30.769 24.50 2.67 43.04 2.52
732 750 7.496529 TGAGTGGTCATGACTAAAAAGAAAG 57.503 36.000 24.50 0.00 0.00 2.62
733 751 6.486657 TGAGTGGTCATGACTAAAAAGAAAGG 59.513 38.462 24.50 0.00 0.00 3.11
734 752 6.365520 AGTGGTCATGACTAAAAAGAAAGGT 58.634 36.000 24.50 0.00 0.00 3.50
735 753 7.514721 AGTGGTCATGACTAAAAAGAAAGGTA 58.485 34.615 24.50 0.00 0.00 3.08
736 754 7.661847 AGTGGTCATGACTAAAAAGAAAGGTAG 59.338 37.037 24.50 0.00 0.00 3.18
737 755 7.660208 GTGGTCATGACTAAAAAGAAAGGTAGA 59.340 37.037 24.50 0.00 0.00 2.59
738 756 7.878127 TGGTCATGACTAAAAAGAAAGGTAGAG 59.122 37.037 24.50 0.00 0.00 2.43
739 757 8.095169 GGTCATGACTAAAAAGAAAGGTAGAGA 58.905 37.037 24.50 0.00 0.00 3.10
740 758 9.660180 GTCATGACTAAAAAGAAAGGTAGAGAT 57.340 33.333 18.83 0.00 0.00 2.75
743 761 9.825109 ATGACTAAAAAGAAAGGTAGAGATAGC 57.175 33.333 0.00 0.00 0.00 2.97
744 762 8.258708 TGACTAAAAAGAAAGGTAGAGATAGCC 58.741 37.037 0.00 0.00 0.00 3.93
745 763 7.266400 ACTAAAAAGAAAGGTAGAGATAGCCG 58.734 38.462 0.00 0.00 0.00 5.52
746 764 5.934402 AAAAGAAAGGTAGAGATAGCCGA 57.066 39.130 0.00 0.00 0.00 5.54
747 765 5.523438 AAAGAAAGGTAGAGATAGCCGAG 57.477 43.478 0.00 0.00 0.00 4.63
748 766 3.492337 AGAAAGGTAGAGATAGCCGAGG 58.508 50.000 0.00 0.00 0.00 4.63
749 767 3.138653 AGAAAGGTAGAGATAGCCGAGGA 59.861 47.826 0.00 0.00 0.00 3.71
750 768 3.596940 AAGGTAGAGATAGCCGAGGAA 57.403 47.619 0.00 0.00 0.00 3.36
751 769 3.818295 AGGTAGAGATAGCCGAGGAAT 57.182 47.619 0.00 0.00 0.00 3.01
752 770 3.426615 AGGTAGAGATAGCCGAGGAATG 58.573 50.000 0.00 0.00 0.00 2.67
753 771 3.158676 GGTAGAGATAGCCGAGGAATGT 58.841 50.000 0.00 0.00 0.00 2.71
754 772 4.043059 AGGTAGAGATAGCCGAGGAATGTA 59.957 45.833 0.00 0.00 0.00 2.29
755 773 4.765856 GGTAGAGATAGCCGAGGAATGTAA 59.234 45.833 0.00 0.00 0.00 2.41
756 774 5.106078 GGTAGAGATAGCCGAGGAATGTAAG 60.106 48.000 0.00 0.00 0.00 2.34
757 775 3.829601 AGAGATAGCCGAGGAATGTAAGG 59.170 47.826 0.00 0.00 0.00 2.69
758 776 3.574826 GAGATAGCCGAGGAATGTAAGGT 59.425 47.826 0.00 0.00 0.00 3.50
759 777 3.967987 AGATAGCCGAGGAATGTAAGGTT 59.032 43.478 0.00 0.00 0.00 3.50
760 778 4.409247 AGATAGCCGAGGAATGTAAGGTTT 59.591 41.667 0.00 0.00 0.00 3.27
761 779 2.711542 AGCCGAGGAATGTAAGGTTTG 58.288 47.619 0.00 0.00 0.00 2.93
762 780 1.743394 GCCGAGGAATGTAAGGTTTGG 59.257 52.381 0.00 0.00 0.00 3.28
763 781 2.878526 GCCGAGGAATGTAAGGTTTGGT 60.879 50.000 0.00 0.00 0.00 3.67
764 782 3.418047 CCGAGGAATGTAAGGTTTGGTT 58.582 45.455 0.00 0.00 0.00 3.67
765 783 3.824443 CCGAGGAATGTAAGGTTTGGTTT 59.176 43.478 0.00 0.00 0.00 3.27
766 784 4.320935 CCGAGGAATGTAAGGTTTGGTTTG 60.321 45.833 0.00 0.00 0.00 2.93
767 785 4.320935 CGAGGAATGTAAGGTTTGGTTTGG 60.321 45.833 0.00 0.00 0.00 3.28
768 786 3.901222 AGGAATGTAAGGTTTGGTTTGGG 59.099 43.478 0.00 0.00 0.00 4.12
769 787 3.644265 GGAATGTAAGGTTTGGTTTGGGT 59.356 43.478 0.00 0.00 0.00 4.51
770 788 4.101898 GGAATGTAAGGTTTGGTTTGGGTT 59.898 41.667 0.00 0.00 0.00 4.11
771 789 5.396996 GGAATGTAAGGTTTGGTTTGGGTTT 60.397 40.000 0.00 0.00 0.00 3.27
772 790 4.739587 TGTAAGGTTTGGTTTGGGTTTC 57.260 40.909 0.00 0.00 0.00 2.78
773 791 4.094476 TGTAAGGTTTGGTTTGGGTTTCA 58.906 39.130 0.00 0.00 0.00 2.69
774 792 3.620427 AAGGTTTGGTTTGGGTTTCAC 57.380 42.857 0.00 0.00 0.00 3.18
775 793 1.834896 AGGTTTGGTTTGGGTTTCACC 59.165 47.619 0.00 0.00 37.60 4.02
776 794 1.834896 GGTTTGGTTTGGGTTTCACCT 59.165 47.619 0.00 0.00 38.64 4.00
777 795 2.419436 GGTTTGGTTTGGGTTTCACCTG 60.419 50.000 0.00 0.00 38.64 4.00
778 796 2.498078 GTTTGGTTTGGGTTTCACCTGA 59.502 45.455 0.00 0.00 38.64 3.86
779 797 2.765689 TGGTTTGGGTTTCACCTGAT 57.234 45.000 0.00 0.00 38.64 2.90
780 798 3.039252 TGGTTTGGGTTTCACCTGATT 57.961 42.857 0.00 0.00 38.64 2.57
781 799 2.697751 TGGTTTGGGTTTCACCTGATTG 59.302 45.455 0.00 0.00 38.64 2.67
782 800 2.547855 GGTTTGGGTTTCACCTGATTGC 60.548 50.000 0.00 0.00 38.64 3.56
783 801 2.079170 TTGGGTTTCACCTGATTGCA 57.921 45.000 0.00 0.00 38.64 4.08
784 802 2.307496 TGGGTTTCACCTGATTGCAT 57.693 45.000 0.00 0.00 38.64 3.96
785 803 2.607499 TGGGTTTCACCTGATTGCATT 58.393 42.857 0.00 0.00 38.64 3.56
786 804 2.562298 TGGGTTTCACCTGATTGCATTC 59.438 45.455 1.55 1.55 38.64 2.67
787 805 2.827921 GGGTTTCACCTGATTGCATTCT 59.172 45.455 9.81 0.00 38.64 2.40
788 806 3.367703 GGGTTTCACCTGATTGCATTCTG 60.368 47.826 9.81 8.92 38.64 3.02
789 807 3.367703 GGTTTCACCTGATTGCATTCTGG 60.368 47.826 24.71 24.71 39.79 3.86
790 808 2.133281 TCACCTGATTGCATTCTGGG 57.867 50.000 27.79 21.24 38.63 4.45
791 809 1.634973 TCACCTGATTGCATTCTGGGA 59.365 47.619 27.79 21.19 38.63 4.37
792 810 1.747355 CACCTGATTGCATTCTGGGAC 59.253 52.381 27.79 0.00 38.63 4.46
793 811 1.341383 ACCTGATTGCATTCTGGGACC 60.341 52.381 27.79 0.00 38.63 4.46
794 812 1.396653 CTGATTGCATTCTGGGACCC 58.603 55.000 2.45 2.45 0.00 4.46
795 813 0.703488 TGATTGCATTCTGGGACCCA 59.297 50.000 14.08 14.08 0.00 4.51
820 838 4.701956 TTTTTGGGCGATTCTCAAGATC 57.298 40.909 0.00 0.00 0.00 2.75
821 839 3.348647 TTTGGGCGATTCTCAAGATCA 57.651 42.857 0.00 0.00 0.00 2.92
822 840 2.315925 TGGGCGATTCTCAAGATCAC 57.684 50.000 0.00 0.00 0.00 3.06
823 841 1.212616 GGGCGATTCTCAAGATCACG 58.787 55.000 0.00 0.00 0.00 4.35
824 842 1.212616 GGCGATTCTCAAGATCACGG 58.787 55.000 0.00 0.00 0.00 4.94
825 843 1.202417 GGCGATTCTCAAGATCACGGA 60.202 52.381 0.00 0.00 0.00 4.69
826 844 2.540515 GCGATTCTCAAGATCACGGAA 58.459 47.619 0.00 0.00 0.00 4.30
827 845 2.537625 GCGATTCTCAAGATCACGGAAG 59.462 50.000 0.00 0.00 0.00 3.46
828 846 3.735208 GCGATTCTCAAGATCACGGAAGA 60.735 47.826 0.00 0.00 0.00 2.87
829 847 4.424626 CGATTCTCAAGATCACGGAAGAA 58.575 43.478 0.00 0.00 0.00 2.52
830 848 5.046529 CGATTCTCAAGATCACGGAAGAAT 58.953 41.667 0.00 2.34 0.00 2.40
831 849 5.174761 CGATTCTCAAGATCACGGAAGAATC 59.825 44.000 17.48 17.48 37.86 2.52
832 850 5.405935 TTCTCAAGATCACGGAAGAATCA 57.594 39.130 0.00 0.00 32.09 2.57
833 851 5.003692 TCTCAAGATCACGGAAGAATCAG 57.996 43.478 0.00 0.00 32.09 2.90
834 852 4.706962 TCTCAAGATCACGGAAGAATCAGA 59.293 41.667 0.00 0.00 32.09 3.27
835 853 5.185828 TCTCAAGATCACGGAAGAATCAGAA 59.814 40.000 0.00 0.00 32.09 3.02
836 854 5.793817 TCAAGATCACGGAAGAATCAGAAA 58.206 37.500 0.00 0.00 32.09 2.52
837 855 6.230472 TCAAGATCACGGAAGAATCAGAAAA 58.770 36.000 0.00 0.00 32.09 2.29
838 856 6.710295 TCAAGATCACGGAAGAATCAGAAAAA 59.290 34.615 0.00 0.00 32.09 1.94
854 872 3.869493 AAAAACTGGGCCTGGATGT 57.131 47.368 15.36 0.00 0.00 3.06
855 873 2.101640 AAAAACTGGGCCTGGATGTT 57.898 45.000 15.36 2.01 0.00 2.71
856 874 2.990740 AAAACTGGGCCTGGATGTTA 57.009 45.000 15.36 0.00 0.00 2.41
857 875 3.473113 AAAACTGGGCCTGGATGTTAT 57.527 42.857 15.36 0.00 0.00 1.89
858 876 3.473113 AAACTGGGCCTGGATGTTATT 57.527 42.857 15.36 0.00 0.00 1.40
859 877 2.442236 ACTGGGCCTGGATGTTATTG 57.558 50.000 15.36 0.00 0.00 1.90
860 878 1.035139 CTGGGCCTGGATGTTATTGC 58.965 55.000 4.53 0.00 0.00 3.56
861 879 0.334335 TGGGCCTGGATGTTATTGCA 59.666 50.000 4.53 0.00 0.00 4.08
862 880 0.746659 GGGCCTGGATGTTATTGCAC 59.253 55.000 0.84 0.00 0.00 4.57
863 881 1.473258 GGCCTGGATGTTATTGCACA 58.527 50.000 0.00 0.00 0.00 4.57
864 882 1.134946 GGCCTGGATGTTATTGCACAC 59.865 52.381 0.00 0.00 0.00 3.82
865 883 1.202177 GCCTGGATGTTATTGCACACG 60.202 52.381 0.00 0.00 0.00 4.49
866 884 2.355197 CCTGGATGTTATTGCACACGA 58.645 47.619 0.00 0.00 0.00 4.35
867 885 2.945008 CCTGGATGTTATTGCACACGAT 59.055 45.455 0.00 0.00 0.00 3.73
868 886 4.126437 CCTGGATGTTATTGCACACGATA 58.874 43.478 0.00 0.00 0.00 2.92
869 887 4.756642 CCTGGATGTTATTGCACACGATAT 59.243 41.667 0.00 0.00 0.00 1.63
870 888 5.239306 CCTGGATGTTATTGCACACGATATT 59.761 40.000 0.00 0.00 0.00 1.28
871 889 6.238731 CCTGGATGTTATTGCACACGATATTT 60.239 38.462 0.00 0.00 0.00 1.40
872 890 6.724263 TGGATGTTATTGCACACGATATTTC 58.276 36.000 0.00 0.00 0.00 2.17
906 924 8.912658 GCCTCTTAATAAATTAAATAAAGCGGC 58.087 33.333 0.00 0.00 32.39 6.53
921 939 2.175202 AGCGGCATGATTACCCAAAAA 58.825 42.857 1.45 0.00 0.00 1.94
922 940 2.166254 AGCGGCATGATTACCCAAAAAG 59.834 45.455 1.45 0.00 0.00 2.27
936 954 3.840468 CCAAAAAGGGTATTGGTTACGC 58.160 45.455 0.00 0.00 40.96 4.42
938 956 4.262079 CCAAAAAGGGTATTGGTTACGCAA 60.262 41.667 0.00 0.00 44.14 4.85
939 957 5.474825 CAAAAAGGGTATTGGTTACGCAAT 58.525 37.500 3.20 4.90 44.14 3.56
992 1010 2.171003 TGCTCGACAGAAATCCTGAGA 58.829 47.619 0.00 0.00 45.78 3.27
1008 1026 3.880846 GAGAAGCCAATGCCGCCG 61.881 66.667 0.00 0.00 38.69 6.46
1092 1110 4.838152 GGGCGCCAGCTCGATCAA 62.838 66.667 30.85 0.00 44.37 2.57
1580 1598 1.884579 GATTGCTGCACATATGGAGGG 59.115 52.381 0.00 0.00 44.18 4.30
1996 2014 2.029964 CGCAGTGTGGGTTACCGT 59.970 61.111 0.00 0.00 40.75 4.83
2154 2172 6.704050 GGAGGCAAAGAGATCTTATCTGTTAC 59.296 42.308 0.00 0.00 41.45 2.50
2238 2256 2.033299 CGAGTTGTGTGACAATGGCTTT 59.967 45.455 0.00 0.00 40.59 3.51
2311 2329 0.103026 TCTGATTGATGAGGGACGCG 59.897 55.000 3.53 3.53 0.00 6.01
2711 2729 3.697045 GCTGAAGGCAGTCTTAGAGAGTA 59.303 47.826 0.00 0.00 44.17 2.59
2718 2736 6.848069 AGGCAGTCTTAGAGAGTATATCACT 58.152 40.000 0.00 0.00 41.47 3.41
2736 2754 1.224075 CTGGTGAGCTTGACAGTGTG 58.776 55.000 0.00 0.00 0.00 3.82
2828 2846 6.925610 TGAATGAAGAATTGAAGATACCCG 57.074 37.500 0.00 0.00 0.00 5.28
2853 2873 4.832248 TCTCAAGAGTGTGTTGTTCAAGT 58.168 39.130 0.00 0.00 0.00 3.16
2859 2879 4.156008 AGAGTGTGTTGTTCAAGTTTGGTC 59.844 41.667 0.00 0.00 0.00 4.02
2880 2900 5.007724 GGTCGTTTCTTTCATCAAAGTCAGT 59.992 40.000 0.00 0.00 40.16 3.41
2899 2919 5.827797 GTCAGTAAATCTGCATATGGGGAAA 59.172 40.000 4.56 0.00 43.32 3.13
2903 2923 8.206189 CAGTAAATCTGCATATGGGGAAATTTT 58.794 33.333 4.56 0.00 37.36 1.82
2941 2961 1.364171 GGAGCTCCGCACGTCATAT 59.636 57.895 19.06 0.00 0.00 1.78
2996 3016 7.305474 CCATGGTGTGTTAACAAAGAATAGAC 58.695 38.462 10.51 0.00 38.27 2.59
3013 3033 3.737559 AGACATGCTACCCAAATTCCA 57.262 42.857 0.00 0.00 0.00 3.53
3072 3102 1.985473 ACAACTTTCATGAGCTGCCA 58.015 45.000 0.00 0.00 0.00 4.92
3087 3117 2.231964 GCTGCCAACAATTCCAAGATCA 59.768 45.455 0.00 0.00 0.00 2.92
3088 3118 3.118884 GCTGCCAACAATTCCAAGATCAT 60.119 43.478 0.00 0.00 0.00 2.45
3089 3119 4.098349 GCTGCCAACAATTCCAAGATCATA 59.902 41.667 0.00 0.00 0.00 2.15
3090 3120 5.735354 GCTGCCAACAATTCCAAGATCATAG 60.735 44.000 0.00 0.00 0.00 2.23
3091 3121 4.098349 TGCCAACAATTCCAAGATCATAGC 59.902 41.667 0.00 0.00 0.00 2.97
3092 3122 4.340381 GCCAACAATTCCAAGATCATAGCT 59.660 41.667 0.00 0.00 0.00 3.32
3093 3123 5.532406 GCCAACAATTCCAAGATCATAGCTA 59.468 40.000 0.00 0.00 0.00 3.32
3094 3124 6.293845 GCCAACAATTCCAAGATCATAGCTAG 60.294 42.308 0.00 0.00 0.00 3.42
3095 3125 6.293845 CCAACAATTCCAAGATCATAGCTAGC 60.294 42.308 6.62 6.62 0.00 3.42
3096 3126 5.312079 ACAATTCCAAGATCATAGCTAGCC 58.688 41.667 12.13 0.00 0.00 3.93
3097 3127 5.072872 ACAATTCCAAGATCATAGCTAGCCT 59.927 40.000 12.13 1.20 0.00 4.58
3098 3128 6.270927 ACAATTCCAAGATCATAGCTAGCCTA 59.729 38.462 12.13 3.68 0.00 3.93
3099 3129 5.730296 TTCCAAGATCATAGCTAGCCTAC 57.270 43.478 12.13 0.00 0.00 3.18
3100 3130 4.740902 TCCAAGATCATAGCTAGCCTACA 58.259 43.478 12.13 0.00 0.00 2.74
3101 3131 5.147767 TCCAAGATCATAGCTAGCCTACAA 58.852 41.667 12.13 0.00 0.00 2.41
3116 3146 3.733337 CCTACAAGACTTGTCTGCAGTT 58.267 45.455 23.79 0.08 44.12 3.16
3126 3156 1.071605 GTCTGCAGTTTAGCCAGTCG 58.928 55.000 14.67 0.00 0.00 4.18
3140 3170 1.005037 AGTCGCAAGGAATCACGCA 60.005 52.632 0.00 0.00 38.47 5.24
3151 3181 2.606725 GGAATCACGCAGTCTTCAGATG 59.393 50.000 0.00 0.00 41.61 2.90
3188 3218 2.312390 TGGTAGTCCAAAGCCCAAAAC 58.688 47.619 0.00 0.00 41.25 2.43
3197 3227 3.112580 CAAAGCCCAAAACGTAACTGTG 58.887 45.455 0.00 0.00 0.00 3.66
3216 3246 1.939934 TGCATAGAATTGCTACACCGC 59.060 47.619 0.00 0.00 43.18 5.68
3253 3284 7.884816 TTCAAATTCGGAAGTAGAACTACAG 57.115 36.000 13.34 3.58 38.48 2.74
3405 3437 2.432146 TCTGTGCGATATGAGGCTTTCT 59.568 45.455 0.00 0.00 0.00 2.52
3408 3440 3.374988 TGTGCGATATGAGGCTTTCTTTG 59.625 43.478 0.00 0.00 0.00 2.77
3409 3441 2.945008 TGCGATATGAGGCTTTCTTTGG 59.055 45.455 0.00 0.00 0.00 3.28
3420 3467 2.747436 CTTTCTTTGGTTGCTCTTGGC 58.253 47.619 0.00 0.00 42.22 4.52
3592 3669 7.716123 TGGATTTACGTGTTTTCCTCTCTTTAA 59.284 33.333 0.00 0.00 0.00 1.52
3599 3676 6.534934 GTGTTTTCCTCTCTTTAATGCTACG 58.465 40.000 0.00 0.00 0.00 3.51
3603 3680 5.654603 TCCTCTCTTTAATGCTACGAACA 57.345 39.130 0.00 0.00 0.00 3.18
3640 3717 8.147058 AGTGTGTTTTGCATTCACCATATAAAA 58.853 29.630 11.82 0.00 0.00 1.52
3684 3761 6.596106 TGTGTACATTTTATTGCTGGATACGT 59.404 34.615 0.00 0.00 42.51 3.57
3686 3763 6.819146 TGTACATTTTATTGCTGGATACGTGA 59.181 34.615 0.00 0.00 42.51 4.35
3704 3781 9.740239 GATACGTGAAGTGTATACAAAGGAATA 57.260 33.333 7.25 0.00 32.84 1.75
3719 3796 8.868522 ACAAAGGAATATCAAACAAGATCTGA 57.131 30.769 0.00 0.00 0.00 3.27
3723 3800 6.204301 AGGAATATCAAACAAGATCTGATGCG 59.796 38.462 0.00 0.00 32.22 4.73
3734 3811 2.839486 TCTGATGCGTGACCTTTTCT 57.161 45.000 0.00 0.00 0.00 2.52
3756 3839 1.300481 GCGGTATGAGGCTTTCCTTC 58.700 55.000 0.00 0.00 44.46 3.46
3772 3855 1.394917 CCTTCTCTGTTGTATGCACGC 59.605 52.381 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.548920 GGAACAGGGAACACAGAGACAG 60.549 54.545 0.00 0.00 0.00 3.51
1 2 1.416401 GGAACAGGGAACACAGAGACA 59.584 52.381 0.00 0.00 0.00 3.41
2 3 1.270893 GGGAACAGGGAACACAGAGAC 60.271 57.143 0.00 0.00 0.00 3.36
3 4 1.056660 GGGAACAGGGAACACAGAGA 58.943 55.000 0.00 0.00 0.00 3.10
4 5 0.036875 GGGGAACAGGGAACACAGAG 59.963 60.000 0.00 0.00 0.00 3.35
5 6 0.696143 TGGGGAACAGGGAACACAGA 60.696 55.000 0.00 0.00 0.00 3.41
6 7 0.405585 ATGGGGAACAGGGAACACAG 59.594 55.000 0.00 0.00 0.00 3.66
7 8 0.856982 AATGGGGAACAGGGAACACA 59.143 50.000 0.00 0.00 0.00 3.72
8 9 1.203001 TCAATGGGGAACAGGGAACAC 60.203 52.381 0.00 0.00 0.00 3.32
9 10 1.153539 TCAATGGGGAACAGGGAACA 58.846 50.000 0.00 0.00 0.00 3.18
10 11 2.379005 GATCAATGGGGAACAGGGAAC 58.621 52.381 0.00 0.00 0.00 3.62
11 12 1.287739 GGATCAATGGGGAACAGGGAA 59.712 52.381 0.00 0.00 0.00 3.97
12 13 0.926293 GGATCAATGGGGAACAGGGA 59.074 55.000 0.00 0.00 0.00 4.20
13 14 0.630673 TGGATCAATGGGGAACAGGG 59.369 55.000 0.00 0.00 0.00 4.45
14 15 2.025037 TCTTGGATCAATGGGGAACAGG 60.025 50.000 0.00 0.00 0.00 4.00
15 16 3.370840 TCTTGGATCAATGGGGAACAG 57.629 47.619 0.00 0.00 0.00 3.16
16 17 3.373001 GGATCTTGGATCAATGGGGAACA 60.373 47.826 9.33 0.00 0.00 3.18
17 18 3.225940 GGATCTTGGATCAATGGGGAAC 58.774 50.000 9.33 0.00 0.00 3.62
18 19 2.858133 TGGATCTTGGATCAATGGGGAA 59.142 45.455 9.33 0.00 0.00 3.97
19 20 2.175499 GTGGATCTTGGATCAATGGGGA 59.825 50.000 9.33 0.00 0.00 4.81
20 21 2.590821 GTGGATCTTGGATCAATGGGG 58.409 52.381 9.33 0.00 0.00 4.96
21 22 2.224606 CGTGGATCTTGGATCAATGGG 58.775 52.381 9.33 0.00 0.00 4.00
22 23 2.224606 CCGTGGATCTTGGATCAATGG 58.775 52.381 8.30 8.30 0.00 3.16
23 24 1.605710 GCCGTGGATCTTGGATCAATG 59.394 52.381 9.33 4.03 0.00 2.82
24 25 1.492176 AGCCGTGGATCTTGGATCAAT 59.508 47.619 9.33 0.00 0.00 2.57
25 26 0.911769 AGCCGTGGATCTTGGATCAA 59.088 50.000 9.33 0.00 0.00 2.57
26 27 0.465705 GAGCCGTGGATCTTGGATCA 59.534 55.000 10.43 0.00 38.07 2.92
27 28 0.598680 CGAGCCGTGGATCTTGGATC 60.599 60.000 2.31 6.61 34.89 3.36
28 29 1.443407 CGAGCCGTGGATCTTGGAT 59.557 57.895 2.31 0.00 0.00 3.41
29 30 2.721167 CCGAGCCGTGGATCTTGGA 61.721 63.158 2.31 0.00 36.21 3.53
30 31 2.202932 CCGAGCCGTGGATCTTGG 60.203 66.667 2.31 0.00 0.00 3.61
31 32 2.202932 CCCGAGCCGTGGATCTTG 60.203 66.667 2.31 0.00 0.00 3.02
32 33 2.363795 TCCCGAGCCGTGGATCTT 60.364 61.111 2.31 0.00 0.00 2.40
33 34 3.148279 GTCCCGAGCCGTGGATCT 61.148 66.667 2.31 0.00 31.41 2.75
34 35 4.222847 GGTCCCGAGCCGTGGATC 62.223 72.222 0.00 0.00 31.41 3.36
46 47 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
47 48 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
48 49 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
49 50 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
50 51 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
51 52 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
52 53 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
53 54 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
54 55 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
59 60 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
60 61 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
61 62 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
62 63 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
63 64 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
64 65 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
70 71 2.726633 CATGTTGTCGGTGTCAAAACC 58.273 47.619 0.00 0.00 36.82 3.27
71 72 2.116366 GCATGTTGTCGGTGTCAAAAC 58.884 47.619 0.00 0.00 0.00 2.43
72 73 1.066303 GGCATGTTGTCGGTGTCAAAA 59.934 47.619 0.00 0.00 0.00 2.44
73 74 0.665835 GGCATGTTGTCGGTGTCAAA 59.334 50.000 0.00 0.00 0.00 2.69
74 75 0.179032 AGGCATGTTGTCGGTGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
75 76 0.682292 TAGGCATGTTGTCGGTGTCA 59.318 50.000 0.00 0.00 0.00 3.58
76 77 1.359848 CTAGGCATGTTGTCGGTGTC 58.640 55.000 0.00 0.00 0.00 3.67
77 78 0.673644 GCTAGGCATGTTGTCGGTGT 60.674 55.000 0.00 0.00 0.00 4.16
78 79 0.673333 TGCTAGGCATGTTGTCGGTG 60.673 55.000 0.00 0.00 31.71 4.94
79 80 1.676968 TGCTAGGCATGTTGTCGGT 59.323 52.632 0.00 0.00 31.71 4.69
80 81 4.615901 TGCTAGGCATGTTGTCGG 57.384 55.556 0.00 0.00 31.71 4.79
140 143 1.608590 ACGTCAACAATTCCAAGCCAG 59.391 47.619 0.00 0.00 0.00 4.85
150 153 6.145048 CGTACTCCTCTAAAAACGTCAACAAT 59.855 38.462 0.00 0.00 0.00 2.71
158 161 5.632347 ACAACATCGTACTCCTCTAAAAACG 59.368 40.000 0.00 0.00 0.00 3.60
285 292 0.529555 ATTTGTTGTGGTTGTGCGGC 60.530 50.000 0.00 0.00 0.00 6.53
341 348 9.122613 GTACTGAGCATTTGAAATTTCTTCTTC 57.877 33.333 18.64 9.49 0.00 2.87
343 350 8.169977 TGTACTGAGCATTTGAAATTTCTTCT 57.830 30.769 18.64 8.40 0.00 2.85
371 378 4.678840 GCCCACTTGGATGCTTTAATCTTG 60.679 45.833 0.00 0.00 37.39 3.02
377 384 2.603075 AAGCCCACTTGGATGCTTTA 57.397 45.000 6.06 0.00 38.84 1.85
436 451 2.520979 CAACTCGGCGTTTTCACAAAA 58.479 42.857 6.85 0.00 32.27 2.44
444 459 0.881118 AATGATGCAACTCGGCGTTT 59.119 45.000 6.85 0.00 36.28 3.60
447 462 2.823196 TAAAATGATGCAACTCGGCG 57.177 45.000 0.00 0.00 36.28 6.46
452 467 8.537728 TCCCTGATAAATAAAATGATGCAACT 57.462 30.769 0.00 0.00 0.00 3.16
466 481 7.875311 TCATATGTATGCCATCCCTGATAAAT 58.125 34.615 1.90 0.00 34.86 1.40
481 496 5.912360 AGTGTCATGCGTTCATATGTATG 57.088 39.130 1.90 0.00 35.44 2.39
483 498 5.290885 GTCAAGTGTCATGCGTTCATATGTA 59.709 40.000 1.90 0.00 0.00 2.29
507 522 3.223423 TGCGAGAGAGCACTAAGAAAG 57.777 47.619 0.00 0.00 42.92 2.62
517 532 2.555199 ACCAACATTATGCGAGAGAGC 58.445 47.619 0.00 0.00 37.71 4.09
549 566 4.219507 ACTGATCCGCTCCTTCTATATGTG 59.780 45.833 0.00 0.00 0.00 3.21
550 567 4.411927 ACTGATCCGCTCCTTCTATATGT 58.588 43.478 0.00 0.00 0.00 2.29
558 576 3.863407 GGAAACTGATCCGCTCCTT 57.137 52.632 0.00 0.00 0.00 3.36
585 603 6.071334 TCGAGAGTGATATTGAAGTCTTGGTT 60.071 38.462 0.00 0.00 30.88 3.67
614 632 2.034179 GGAAGCCAAGTGGTTACAACAC 59.966 50.000 0.00 0.00 35.26 3.32
615 633 2.303175 GGAAGCCAAGTGGTTACAACA 58.697 47.619 0.00 0.00 35.26 3.33
616 634 1.611977 GGGAAGCCAAGTGGTTACAAC 59.388 52.381 0.00 0.00 36.99 3.32
617 635 1.479757 GGGGAAGCCAAGTGGTTACAA 60.480 52.381 0.00 0.00 36.99 2.41
618 636 0.111639 GGGGAAGCCAAGTGGTTACA 59.888 55.000 0.00 0.00 36.99 2.41
619 637 0.111639 TGGGGAAGCCAAGTGGTTAC 59.888 55.000 0.00 0.00 37.57 2.50
620 638 0.854218 TTGGGGAAGCCAAGTGGTTA 59.146 50.000 0.00 0.00 37.57 2.85
621 639 0.759060 GTTGGGGAAGCCAAGTGGTT 60.759 55.000 0.00 0.00 37.57 3.67
622 640 1.152546 GTTGGGGAAGCCAAGTGGT 60.153 57.895 0.00 0.00 37.57 4.16
623 641 0.758685 TTGTTGGGGAAGCCAAGTGG 60.759 55.000 0.00 0.00 38.53 4.00
624 642 1.001181 CATTGTTGGGGAAGCCAAGTG 59.999 52.381 0.00 0.00 0.00 3.16
625 643 1.133199 TCATTGTTGGGGAAGCCAAGT 60.133 47.619 0.00 0.00 0.00 3.16
626 644 1.631405 TCATTGTTGGGGAAGCCAAG 58.369 50.000 0.00 0.00 0.00 3.61
627 645 2.323999 ATCATTGTTGGGGAAGCCAA 57.676 45.000 0.00 0.00 0.00 4.52
628 646 3.464720 TTATCATTGTTGGGGAAGCCA 57.535 42.857 0.00 0.00 0.00 4.75
629 647 3.960102 TCATTATCATTGTTGGGGAAGCC 59.040 43.478 0.00 0.00 0.00 4.35
630 648 5.537674 AGATCATTATCATTGTTGGGGAAGC 59.462 40.000 0.00 0.00 34.28 3.86
631 649 7.592885 AAGATCATTATCATTGTTGGGGAAG 57.407 36.000 0.00 0.00 34.28 3.46
632 650 7.618907 TCAAAGATCATTATCATTGTTGGGGAA 59.381 33.333 5.12 0.00 40.23 3.97
633 651 7.124721 TCAAAGATCATTATCATTGTTGGGGA 58.875 34.615 5.12 0.00 40.23 4.81
634 652 7.350744 TCAAAGATCATTATCATTGTTGGGG 57.649 36.000 5.12 0.00 40.23 4.96
657 675 9.282247 GCGGATCAATGAAATCATAAACATATC 57.718 33.333 0.00 0.00 35.10 1.63
658 676 8.795513 TGCGGATCAATGAAATCATAAACATAT 58.204 29.630 0.00 0.00 35.10 1.78
659 677 8.164058 TGCGGATCAATGAAATCATAAACATA 57.836 30.769 0.00 0.00 35.10 2.29
660 678 7.041635 TGCGGATCAATGAAATCATAAACAT 57.958 32.000 0.00 0.00 35.10 2.71
661 679 6.448207 TGCGGATCAATGAAATCATAAACA 57.552 33.333 0.00 0.00 35.10 2.83
662 680 7.365741 AGATGCGGATCAATGAAATCATAAAC 58.634 34.615 19.67 0.00 35.10 2.01
663 681 7.514784 AGATGCGGATCAATGAAATCATAAA 57.485 32.000 19.67 0.00 35.10 1.40
664 682 8.620116 TTAGATGCGGATCAATGAAATCATAA 57.380 30.769 19.67 2.13 35.10 1.90
665 683 7.335171 CCTTAGATGCGGATCAATGAAATCATA 59.665 37.037 19.67 0.00 35.10 2.15
666 684 6.150641 CCTTAGATGCGGATCAATGAAATCAT 59.849 38.462 19.67 0.00 38.41 2.45
667 685 5.471116 CCTTAGATGCGGATCAATGAAATCA 59.529 40.000 19.67 0.00 0.00 2.57
668 686 5.618640 GCCTTAGATGCGGATCAATGAAATC 60.619 44.000 19.67 0.00 0.00 2.17
669 687 4.217118 GCCTTAGATGCGGATCAATGAAAT 59.783 41.667 19.67 0.00 0.00 2.17
670 688 3.565482 GCCTTAGATGCGGATCAATGAAA 59.435 43.478 19.67 4.44 0.00 2.69
671 689 3.141398 GCCTTAGATGCGGATCAATGAA 58.859 45.455 19.67 6.55 0.00 2.57
672 690 2.104622 TGCCTTAGATGCGGATCAATGA 59.895 45.455 19.67 0.00 0.00 2.57
673 691 2.497138 TGCCTTAGATGCGGATCAATG 58.503 47.619 19.67 7.75 0.00 2.82
674 692 2.936919 TGCCTTAGATGCGGATCAAT 57.063 45.000 19.67 1.58 0.00 2.57
675 693 2.708216 TTGCCTTAGATGCGGATCAA 57.292 45.000 19.67 10.08 0.00 2.57
676 694 2.550855 GGATTGCCTTAGATGCGGATCA 60.551 50.000 19.67 2.38 0.00 2.92
677 695 2.079925 GGATTGCCTTAGATGCGGATC 58.920 52.381 9.16 9.16 0.00 3.36
678 696 1.609061 CGGATTGCCTTAGATGCGGAT 60.609 52.381 0.00 0.00 34.12 4.18
679 697 0.249868 CGGATTGCCTTAGATGCGGA 60.250 55.000 0.00 0.00 34.12 5.54
680 698 0.532862 ACGGATTGCCTTAGATGCGG 60.533 55.000 2.61 0.00 40.71 5.69
681 699 0.861837 GACGGATTGCCTTAGATGCG 59.138 55.000 0.00 0.00 41.89 4.73
682 700 1.953559 TGACGGATTGCCTTAGATGC 58.046 50.000 0.00 0.00 0.00 3.91
683 701 2.614057 GGTTGACGGATTGCCTTAGATG 59.386 50.000 0.00 0.00 0.00 2.90
684 702 2.238646 TGGTTGACGGATTGCCTTAGAT 59.761 45.455 0.00 0.00 0.00 1.98
685 703 1.626321 TGGTTGACGGATTGCCTTAGA 59.374 47.619 0.00 0.00 0.00 2.10
686 704 2.107950 TGGTTGACGGATTGCCTTAG 57.892 50.000 0.00 0.00 0.00 2.18
687 705 2.570415 TTGGTTGACGGATTGCCTTA 57.430 45.000 0.00 0.00 0.00 2.69
688 706 1.698506 TTTGGTTGACGGATTGCCTT 58.301 45.000 0.00 0.00 0.00 4.35
689 707 1.545582 CATTTGGTTGACGGATTGCCT 59.454 47.619 0.00 0.00 0.00 4.75
690 708 1.543802 TCATTTGGTTGACGGATTGCC 59.456 47.619 0.00 0.00 0.00 4.52
691 709 2.228822 ACTCATTTGGTTGACGGATTGC 59.771 45.455 0.00 0.00 0.00 3.56
692 710 3.366273 CCACTCATTTGGTTGACGGATTG 60.366 47.826 0.00 0.00 0.00 2.67
693 711 2.819608 CCACTCATTTGGTTGACGGATT 59.180 45.455 0.00 0.00 0.00 3.01
694 712 2.436417 CCACTCATTTGGTTGACGGAT 58.564 47.619 0.00 0.00 0.00 4.18
695 713 1.890876 CCACTCATTTGGTTGACGGA 58.109 50.000 0.00 0.00 0.00 4.69
703 721 6.573664 TTTTAGTCATGACCACTCATTTGG 57.426 37.500 22.21 0.00 43.04 3.28
704 722 7.874940 TCTTTTTAGTCATGACCACTCATTTG 58.125 34.615 22.21 5.29 34.65 2.32
705 723 8.463930 TTCTTTTTAGTCATGACCACTCATTT 57.536 30.769 22.21 3.75 34.65 2.32
706 724 8.463930 TTTCTTTTTAGTCATGACCACTCATT 57.536 30.769 22.21 4.50 34.65 2.57
707 725 7.175641 CCTTTCTTTTTAGTCATGACCACTCAT 59.824 37.037 22.21 5.25 37.65 2.90
708 726 6.486657 CCTTTCTTTTTAGTCATGACCACTCA 59.513 38.462 22.21 3.51 0.00 3.41
709 727 6.486993 ACCTTTCTTTTTAGTCATGACCACTC 59.513 38.462 22.21 0.00 0.00 3.51
710 728 6.365520 ACCTTTCTTTTTAGTCATGACCACT 58.634 36.000 22.21 6.78 0.00 4.00
711 729 6.635030 ACCTTTCTTTTTAGTCATGACCAC 57.365 37.500 22.21 0.00 0.00 4.16
712 730 7.741785 TCTACCTTTCTTTTTAGTCATGACCA 58.258 34.615 22.21 5.97 0.00 4.02
713 731 8.095169 TCTCTACCTTTCTTTTTAGTCATGACC 58.905 37.037 22.21 4.75 0.00 4.02
714 732 9.660180 ATCTCTACCTTTCTTTTTAGTCATGAC 57.340 33.333 18.47 18.47 0.00 3.06
717 735 9.825109 GCTATCTCTACCTTTCTTTTTAGTCAT 57.175 33.333 0.00 0.00 0.00 3.06
718 736 8.258708 GGCTATCTCTACCTTTCTTTTTAGTCA 58.741 37.037 0.00 0.00 0.00 3.41
719 737 7.435784 CGGCTATCTCTACCTTTCTTTTTAGTC 59.564 40.741 0.00 0.00 0.00 2.59
720 738 7.123847 TCGGCTATCTCTACCTTTCTTTTTAGT 59.876 37.037 0.00 0.00 0.00 2.24
721 739 7.490000 TCGGCTATCTCTACCTTTCTTTTTAG 58.510 38.462 0.00 0.00 0.00 1.85
722 740 7.414222 TCGGCTATCTCTACCTTTCTTTTTA 57.586 36.000 0.00 0.00 0.00 1.52
723 741 6.295719 TCGGCTATCTCTACCTTTCTTTTT 57.704 37.500 0.00 0.00 0.00 1.94
724 742 5.163395 CCTCGGCTATCTCTACCTTTCTTTT 60.163 44.000 0.00 0.00 0.00 2.27
725 743 4.342665 CCTCGGCTATCTCTACCTTTCTTT 59.657 45.833 0.00 0.00 0.00 2.52
726 744 3.892588 CCTCGGCTATCTCTACCTTTCTT 59.107 47.826 0.00 0.00 0.00 2.52
727 745 3.138653 TCCTCGGCTATCTCTACCTTTCT 59.861 47.826 0.00 0.00 0.00 2.52
728 746 3.488363 TCCTCGGCTATCTCTACCTTTC 58.512 50.000 0.00 0.00 0.00 2.62
729 747 3.596940 TCCTCGGCTATCTCTACCTTT 57.403 47.619 0.00 0.00 0.00 3.11
730 748 3.596940 TTCCTCGGCTATCTCTACCTT 57.403 47.619 0.00 0.00 0.00 3.50
731 749 3.181427 ACATTCCTCGGCTATCTCTACCT 60.181 47.826 0.00 0.00 0.00 3.08
732 750 3.158676 ACATTCCTCGGCTATCTCTACC 58.841 50.000 0.00 0.00 0.00 3.18
733 751 5.106078 CCTTACATTCCTCGGCTATCTCTAC 60.106 48.000 0.00 0.00 0.00 2.59
734 752 5.010933 CCTTACATTCCTCGGCTATCTCTA 58.989 45.833 0.00 0.00 0.00 2.43
735 753 3.829601 CCTTACATTCCTCGGCTATCTCT 59.170 47.826 0.00 0.00 0.00 3.10
736 754 3.574826 ACCTTACATTCCTCGGCTATCTC 59.425 47.826 0.00 0.00 0.00 2.75
737 755 3.577919 ACCTTACATTCCTCGGCTATCT 58.422 45.455 0.00 0.00 0.00 1.98
738 756 4.338379 AACCTTACATTCCTCGGCTATC 57.662 45.455 0.00 0.00 0.00 2.08
739 757 4.451900 CAAACCTTACATTCCTCGGCTAT 58.548 43.478 0.00 0.00 0.00 2.97
740 758 3.370103 CCAAACCTTACATTCCTCGGCTA 60.370 47.826 0.00 0.00 0.00 3.93
741 759 2.618045 CCAAACCTTACATTCCTCGGCT 60.618 50.000 0.00 0.00 0.00 5.52
742 760 1.743394 CCAAACCTTACATTCCTCGGC 59.257 52.381 0.00 0.00 0.00 5.54
743 761 3.067684 ACCAAACCTTACATTCCTCGG 57.932 47.619 0.00 0.00 0.00 4.63
744 762 4.320935 CCAAACCAAACCTTACATTCCTCG 60.321 45.833 0.00 0.00 0.00 4.63
745 763 4.021456 CCCAAACCAAACCTTACATTCCTC 60.021 45.833 0.00 0.00 0.00 3.71
746 764 3.901222 CCCAAACCAAACCTTACATTCCT 59.099 43.478 0.00 0.00 0.00 3.36
747 765 3.644265 ACCCAAACCAAACCTTACATTCC 59.356 43.478 0.00 0.00 0.00 3.01
748 766 4.948341 ACCCAAACCAAACCTTACATTC 57.052 40.909 0.00 0.00 0.00 2.67
749 767 5.189934 TGAAACCCAAACCAAACCTTACATT 59.810 36.000 0.00 0.00 0.00 2.71
750 768 4.717280 TGAAACCCAAACCAAACCTTACAT 59.283 37.500 0.00 0.00 0.00 2.29
751 769 4.081586 GTGAAACCCAAACCAAACCTTACA 60.082 41.667 0.00 0.00 0.00 2.41
752 770 4.435425 GTGAAACCCAAACCAAACCTTAC 58.565 43.478 0.00 0.00 0.00 2.34
753 771 4.739587 GTGAAACCCAAACCAAACCTTA 57.260 40.909 0.00 0.00 0.00 2.69
754 772 3.620427 GTGAAACCCAAACCAAACCTT 57.380 42.857 0.00 0.00 0.00 3.50
768 786 3.367703 CCCAGAATGCAATCAGGTGAAAC 60.368 47.826 11.83 0.00 31.97 2.78
769 787 2.827322 CCCAGAATGCAATCAGGTGAAA 59.173 45.455 11.83 0.00 31.97 2.69
770 788 2.041485 TCCCAGAATGCAATCAGGTGAA 59.959 45.455 11.83 0.00 31.97 3.18
771 789 1.634973 TCCCAGAATGCAATCAGGTGA 59.365 47.619 11.83 6.41 31.97 4.02
772 790 1.747355 GTCCCAGAATGCAATCAGGTG 59.253 52.381 11.83 4.35 31.97 4.00
773 791 1.341383 GGTCCCAGAATGCAATCAGGT 60.341 52.381 11.83 0.00 31.97 4.00
774 792 1.396653 GGTCCCAGAATGCAATCAGG 58.603 55.000 6.23 6.23 31.97 3.86
775 793 1.341285 TGGGTCCCAGAATGCAATCAG 60.341 52.381 6.47 0.00 31.97 2.90
776 794 0.703488 TGGGTCCCAGAATGCAATCA 59.297 50.000 6.47 0.00 31.97 2.57
777 795 3.594453 TGGGTCCCAGAATGCAATC 57.406 52.632 6.47 0.00 31.97 2.67
799 817 4.078537 TGATCTTGAGAATCGCCCAAAAA 58.921 39.130 0.00 0.00 38.61 1.94
800 818 3.440173 GTGATCTTGAGAATCGCCCAAAA 59.560 43.478 0.00 0.00 38.61 2.44
801 819 3.009723 GTGATCTTGAGAATCGCCCAAA 58.990 45.455 0.00 0.00 38.61 3.28
802 820 2.632377 GTGATCTTGAGAATCGCCCAA 58.368 47.619 0.00 0.00 38.61 4.12
803 821 1.471501 CGTGATCTTGAGAATCGCCCA 60.472 52.381 0.00 0.00 38.61 5.36
804 822 1.212616 CGTGATCTTGAGAATCGCCC 58.787 55.000 0.00 0.00 38.61 6.13
805 823 1.202417 TCCGTGATCTTGAGAATCGCC 60.202 52.381 0.00 0.00 38.61 5.54
806 824 2.209838 TCCGTGATCTTGAGAATCGC 57.790 50.000 0.00 0.00 38.61 4.58
807 825 4.033990 TCTTCCGTGATCTTGAGAATCG 57.966 45.455 0.00 0.00 38.61 3.34
808 826 6.045318 TGATTCTTCCGTGATCTTGAGAATC 58.955 40.000 19.41 19.41 40.14 2.52
809 827 5.982356 TGATTCTTCCGTGATCTTGAGAAT 58.018 37.500 0.00 2.67 0.00 2.40
810 828 5.185828 TCTGATTCTTCCGTGATCTTGAGAA 59.814 40.000 0.00 0.00 0.00 2.87
811 829 4.706962 TCTGATTCTTCCGTGATCTTGAGA 59.293 41.667 0.00 0.00 0.00 3.27
812 830 5.003692 TCTGATTCTTCCGTGATCTTGAG 57.996 43.478 0.00 0.00 0.00 3.02
813 831 5.405935 TTCTGATTCTTCCGTGATCTTGA 57.594 39.130 0.00 0.00 0.00 3.02
814 832 6.486253 TTTTCTGATTCTTCCGTGATCTTG 57.514 37.500 0.00 0.00 0.00 3.02
836 854 2.101640 AACATCCAGGCCCAGTTTTT 57.898 45.000 0.00 0.00 0.00 1.94
837 855 2.990740 TAACATCCAGGCCCAGTTTT 57.009 45.000 0.00 0.00 0.00 2.43
838 856 3.099141 CAATAACATCCAGGCCCAGTTT 58.901 45.455 0.00 0.00 0.00 2.66
839 857 2.738743 CAATAACATCCAGGCCCAGTT 58.261 47.619 0.00 0.00 0.00 3.16
840 858 1.686115 GCAATAACATCCAGGCCCAGT 60.686 52.381 0.00 0.00 0.00 4.00
841 859 1.035139 GCAATAACATCCAGGCCCAG 58.965 55.000 0.00 0.00 0.00 4.45
842 860 0.334335 TGCAATAACATCCAGGCCCA 59.666 50.000 0.00 0.00 0.00 5.36
843 861 0.746659 GTGCAATAACATCCAGGCCC 59.253 55.000 0.00 0.00 0.00 5.80
844 862 1.134946 GTGTGCAATAACATCCAGGCC 59.865 52.381 0.00 0.00 31.49 5.19
845 863 1.202177 CGTGTGCAATAACATCCAGGC 60.202 52.381 0.00 0.00 31.49 4.85
846 864 2.355197 TCGTGTGCAATAACATCCAGG 58.645 47.619 0.00 0.00 31.49 4.45
847 865 5.929697 ATATCGTGTGCAATAACATCCAG 57.070 39.130 0.00 0.00 31.49 3.86
848 866 6.510960 CGAAATATCGTGTGCAATAACATCCA 60.511 38.462 0.00 0.00 44.06 3.41
849 867 5.845953 CGAAATATCGTGTGCAATAACATCC 59.154 40.000 0.00 0.00 44.06 3.51
850 868 6.879104 CGAAATATCGTGTGCAATAACATC 57.121 37.500 0.00 0.00 44.06 3.06
879 897 9.959749 CCGCTTTATTTAATTTATTAAGAGGCA 57.040 29.630 8.00 0.00 34.13 4.75
880 898 8.912658 GCCGCTTTATTTAATTTATTAAGAGGC 58.087 33.333 20.07 20.07 44.27 4.70
881 899 9.959749 TGCCGCTTTATTTAATTTATTAAGAGG 57.040 29.630 12.89 12.89 35.82 3.69
889 907 9.685828 GGTAATCATGCCGCTTTATTTAATTTA 57.314 29.630 0.00 0.00 0.00 1.40
890 908 7.655732 GGGTAATCATGCCGCTTTATTTAATTT 59.344 33.333 0.00 0.00 30.87 1.82
891 909 7.151976 GGGTAATCATGCCGCTTTATTTAATT 58.848 34.615 0.00 0.00 30.87 1.40
892 910 6.266558 TGGGTAATCATGCCGCTTTATTTAAT 59.733 34.615 0.00 0.00 30.87 1.40
893 911 5.594725 TGGGTAATCATGCCGCTTTATTTAA 59.405 36.000 0.00 0.00 30.87 1.52
894 912 5.133941 TGGGTAATCATGCCGCTTTATTTA 58.866 37.500 0.00 0.00 30.87 1.40
895 913 3.957497 TGGGTAATCATGCCGCTTTATTT 59.043 39.130 0.00 0.00 30.87 1.40
896 914 3.561143 TGGGTAATCATGCCGCTTTATT 58.439 40.909 0.00 0.00 30.87 1.40
921 939 3.637911 TGATTGCGTAACCAATACCCT 57.362 42.857 0.00 0.00 35.67 4.34
922 940 4.082679 TGTTTGATTGCGTAACCAATACCC 60.083 41.667 0.00 0.00 35.67 3.69
924 942 5.341196 GTGTGTTTGATTGCGTAACCAATAC 59.659 40.000 0.00 0.00 35.67 1.89
925 943 5.008712 TGTGTGTTTGATTGCGTAACCAATA 59.991 36.000 0.00 0.00 35.67 1.90
926 944 4.202060 TGTGTGTTTGATTGCGTAACCAAT 60.202 37.500 0.00 0.00 38.09 3.16
930 948 3.947626 AGTGTGTGTTTGATTGCGTAAC 58.052 40.909 0.00 0.00 0.00 2.50
932 950 4.571176 TGTAAGTGTGTGTTTGATTGCGTA 59.429 37.500 0.00 0.00 0.00 4.42
933 951 3.375610 TGTAAGTGTGTGTTTGATTGCGT 59.624 39.130 0.00 0.00 0.00 5.24
934 952 3.946402 TGTAAGTGTGTGTTTGATTGCG 58.054 40.909 0.00 0.00 0.00 4.85
935 953 6.074356 GGATTTGTAAGTGTGTGTTTGATTGC 60.074 38.462 0.00 0.00 0.00 3.56
936 954 7.167968 CAGGATTTGTAAGTGTGTGTTTGATTG 59.832 37.037 0.00 0.00 0.00 2.67
938 956 6.545666 TCAGGATTTGTAAGTGTGTGTTTGAT 59.454 34.615 0.00 0.00 0.00 2.57
939 957 5.883115 TCAGGATTTGTAAGTGTGTGTTTGA 59.117 36.000 0.00 0.00 0.00 2.69
1580 1598 2.262915 CACGCTCCACCTCACCTC 59.737 66.667 0.00 0.00 0.00 3.85
1612 1630 1.667154 TTCCTCTCCGGCATCGTCTG 61.667 60.000 0.00 0.00 33.95 3.51
1996 2014 3.052869 TCCTGTATCCAACTAGCCTGAGA 60.053 47.826 0.00 0.00 0.00 3.27
2154 2172 4.755629 CCCAATGCAGAGATCATAGAACTG 59.244 45.833 0.00 0.00 0.00 3.16
2187 2205 2.668001 CGCAATTGCATCTTTTCCACGA 60.668 45.455 28.77 0.00 42.21 4.35
2238 2256 3.433306 AAACAGATTTCATCGGGGTCA 57.567 42.857 0.00 0.00 0.00 4.02
2367 2385 1.227527 CAAGTCCACCACGCACAGA 60.228 57.895 0.00 0.00 0.00 3.41
2711 2729 3.517100 ACTGTCAAGCTCACCAGTGATAT 59.483 43.478 10.33 0.00 39.13 1.63
2718 2736 0.815213 GCACACTGTCAAGCTCACCA 60.815 55.000 0.00 0.00 0.00 4.17
2736 2754 1.038130 TCTCCAAGACCGCCTCTAGC 61.038 60.000 0.00 0.00 38.52 3.42
2826 2844 2.936498 ACAACACACTCTTGAGAAACGG 59.064 45.455 4.49 0.00 0.00 4.44
2828 2846 5.545658 TGAACAACACACTCTTGAGAAAC 57.454 39.130 4.49 0.00 0.00 2.78
2853 2873 6.127869 TGACTTTGATGAAAGAAACGACCAAA 60.128 34.615 11.87 0.00 41.12 3.28
2859 2879 9.107367 GATTTACTGACTTTGATGAAAGAAACG 57.893 33.333 11.87 0.06 41.12 3.60
2899 2919 7.944554 TCCACTCTTCAGTCCAGAATTTAAAAT 59.055 33.333 0.00 0.00 0.00 1.82
2903 2923 5.569630 GCTCCACTCTTCAGTCCAGAATTTA 60.570 44.000 0.00 0.00 0.00 1.40
2935 2955 1.160137 GGCGATGCCTCCAATATGAC 58.840 55.000 0.00 0.00 46.69 3.06
3061 3091 1.546923 TGGAATTGTTGGCAGCTCATG 59.453 47.619 2.28 0.00 0.00 3.07
3072 3102 5.767168 GGCTAGCTATGATCTTGGAATTGTT 59.233 40.000 15.72 0.00 0.00 2.83
3087 3117 5.068460 CAGACAAGTCTTGTAGGCTAGCTAT 59.932 44.000 18.17 6.45 45.52 2.97
3088 3118 4.399618 CAGACAAGTCTTGTAGGCTAGCTA 59.600 45.833 18.17 2.18 45.52 3.32
3089 3119 3.194542 CAGACAAGTCTTGTAGGCTAGCT 59.805 47.826 18.17 6.61 45.52 3.32
3090 3120 3.516615 CAGACAAGTCTTGTAGGCTAGC 58.483 50.000 18.17 6.04 45.52 3.42
3091 3121 3.056536 TGCAGACAAGTCTTGTAGGCTAG 60.057 47.826 27.76 14.75 45.52 3.42
3092 3122 2.897326 TGCAGACAAGTCTTGTAGGCTA 59.103 45.455 27.76 17.91 45.52 3.93
3093 3123 1.694150 TGCAGACAAGTCTTGTAGGCT 59.306 47.619 27.76 16.67 45.52 4.58
3094 3124 2.072298 CTGCAGACAAGTCTTGTAGGC 58.928 52.381 24.07 24.07 45.52 3.93
3095 3125 3.393089 ACTGCAGACAAGTCTTGTAGG 57.607 47.619 23.35 13.67 45.52 3.18
3096 3126 5.107298 GCTAAACTGCAGACAAGTCTTGTAG 60.107 44.000 23.35 13.76 45.52 2.74
3097 3127 4.750098 GCTAAACTGCAGACAAGTCTTGTA 59.250 41.667 23.35 2.10 45.52 2.41
3098 3128 5.514453 GGCTAAACTGCAGACAAGTCTTGT 61.514 45.833 23.35 18.20 37.98 3.16
3099 3129 3.058639 GGCTAAACTGCAGACAAGTCTTG 60.059 47.826 23.35 11.17 37.98 3.02
3100 3130 3.142174 GGCTAAACTGCAGACAAGTCTT 58.858 45.455 23.35 0.00 37.98 3.01
3101 3131 2.104792 TGGCTAAACTGCAGACAAGTCT 59.895 45.455 23.35 0.00 41.37 3.24
3116 3146 1.277842 TGATTCCTTGCGACTGGCTAA 59.722 47.619 0.00 0.00 44.05 3.09
3126 3156 1.129437 GAAGACTGCGTGATTCCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
3151 3181 6.313164 GGACTACCAAATGTGCTTAAGTCTAC 59.687 42.308 4.02 2.41 35.97 2.59
3197 3227 1.939934 TGCGGTGTAGCAATTCTATGC 59.060 47.619 0.00 0.00 45.06 3.14
3216 3246 4.298332 CGAATTTGAAACCTCAACCCTTG 58.702 43.478 0.00 0.00 41.34 3.61
3227 3258 8.080083 TGTAGTTCTACTTCCGAATTTGAAAC 57.920 34.615 10.65 0.00 0.00 2.78
3253 3284 7.212976 TGAGAATATGTGCTCATAAGACCTTC 58.787 38.462 12.17 10.60 39.55 3.46
3308 3339 1.812571 GTCCAGCAATAACCACCACAG 59.187 52.381 0.00 0.00 0.00 3.66
3351 3382 6.409704 TGCACTAGCTCTTATTTGACATTCT 58.590 36.000 0.00 0.00 42.74 2.40
3405 3437 0.398381 AAGGGCCAAGAGCAACCAAA 60.398 50.000 6.18 0.00 46.50 3.28
3408 3440 2.935740 GCAAGGGCCAAGAGCAACC 61.936 63.158 6.18 0.00 46.50 3.77
3409 3441 1.871126 GAGCAAGGGCCAAGAGCAAC 61.871 60.000 6.18 0.00 46.50 4.17
3420 3467 2.290260 TGACTGTGGTAATGAGCAAGGG 60.290 50.000 0.00 0.00 34.12 3.95
3476 3523 7.608308 AATCTGTTACTGCTTTCAGAGATTC 57.392 36.000 0.00 0.00 42.95 2.52
3490 3537 8.160106 AGAGATCAAAGTTCCAAATCTGTTACT 58.840 33.333 0.00 0.00 0.00 2.24
3573 3650 5.063880 AGCATTAAAGAGAGGAAAACACGT 58.936 37.500 0.00 0.00 0.00 4.49
3574 3651 5.613358 AGCATTAAAGAGAGGAAAACACG 57.387 39.130 0.00 0.00 0.00 4.49
3592 3669 2.095263 GCCATGTGTTTGTTCGTAGCAT 60.095 45.455 0.00 0.00 0.00 3.79
3623 3700 9.625747 TCAGAGTTATTTTATATGGTGAATGCA 57.374 29.630 0.00 0.00 0.00 3.96
3640 3717 5.784177 ACACACAAATCGAGTCAGAGTTAT 58.216 37.500 0.00 0.00 0.00 1.89
3644 3721 4.546570 TGTACACACAAATCGAGTCAGAG 58.453 43.478 0.00 0.00 0.00 3.35
3652 3729 7.201342 CCAGCAATAAAATGTACACACAAATCG 60.201 37.037 0.00 0.00 38.42 3.34
3704 3781 4.093998 GTCACGCATCAGATCTTGTTTGAT 59.906 41.667 0.00 0.00 32.01 2.57
3710 3787 2.306341 AGGTCACGCATCAGATCTTG 57.694 50.000 0.00 0.00 0.00 3.02
3715 3792 2.416747 CAGAAAAGGTCACGCATCAGA 58.583 47.619 0.00 0.00 0.00 3.27
3719 3796 1.868997 CGCAGAAAAGGTCACGCAT 59.131 52.632 0.00 0.00 0.00 4.73
3723 3800 0.947180 TACCGCGCAGAAAAGGTCAC 60.947 55.000 8.75 0.00 38.12 3.67
3734 3811 1.813753 GAAAGCCTCATACCGCGCA 60.814 57.895 8.75 0.00 0.00 6.09
3756 3839 2.515641 CAAGCGTGCATACAACAGAG 57.484 50.000 0.00 0.00 0.00 3.35
3772 3855 2.101249 TGAGCAAGAACCAAAAGGCAAG 59.899 45.455 0.00 0.00 0.00 4.01
3777 3860 5.222631 GTGGTAATGAGCAAGAACCAAAAG 58.777 41.667 0.00 0.00 41.65 2.27
3780 3863 2.811431 CGTGGTAATGAGCAAGAACCAA 59.189 45.455 0.00 0.00 41.65 3.67
3781 3864 2.422597 CGTGGTAATGAGCAAGAACCA 58.577 47.619 0.00 0.00 37.88 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.