Multiple sequence alignment - TraesCS7D01G265700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G265700 | chr7D | 100.000 | 5614 | 0 | 0 | 1 | 5614 | 247317670 | 247312057 | 0.000000e+00 | 10368.0 |
1 | TraesCS7D01G265700 | chr7B | 96.833 | 3315 | 70 | 14 | 576 | 3874 | 223715893 | 223712598 | 0.000000e+00 | 5507.0 |
2 | TraesCS7D01G265700 | chr7B | 94.386 | 855 | 42 | 4 | 3934 | 4783 | 223712579 | 223711726 | 0.000000e+00 | 1308.0 |
3 | TraesCS7D01G265700 | chr7B | 91.128 | 789 | 43 | 12 | 2363 | 3151 | 606360286 | 606361047 | 0.000000e+00 | 1044.0 |
4 | TraesCS7D01G265700 | chr7B | 93.348 | 466 | 22 | 5 | 5156 | 5614 | 223702693 | 223702230 | 0.000000e+00 | 680.0 |
5 | TraesCS7D01G265700 | chr7B | 95.238 | 378 | 17 | 1 | 204 | 581 | 223716300 | 223715924 | 1.040000e-166 | 597.0 |
6 | TraesCS7D01G265700 | chr7B | 89.849 | 463 | 18 | 3 | 2363 | 2823 | 621336696 | 621337131 | 8.160000e-158 | 568.0 |
7 | TraesCS7D01G265700 | chr7B | 90.256 | 195 | 5 | 3 | 4823 | 5004 | 223702870 | 223702677 | 5.620000e-60 | 243.0 |
8 | TraesCS7D01G265700 | chr7A | 98.704 | 2160 | 28 | 0 | 579 | 2738 | 264850086 | 264847927 | 0.000000e+00 | 3834.0 |
9 | TraesCS7D01G265700 | chr7A | 95.120 | 2295 | 66 | 26 | 2736 | 5005 | 264847824 | 264845551 | 0.000000e+00 | 3576.0 |
10 | TraesCS7D01G265700 | chr7A | 92.493 | 373 | 16 | 2 | 1 | 361 | 264851004 | 264850632 | 1.790000e-144 | 523.0 |
11 | TraesCS7D01G265700 | chr7A | 90.040 | 251 | 6 | 1 | 350 | 581 | 264850370 | 264850120 | 1.960000e-79 | 307.0 |
12 | TraesCS7D01G265700 | chr7A | 80.734 | 109 | 15 | 4 | 5393 | 5501 | 634451378 | 634451480 | 4.660000e-11 | 80.5 |
13 | TraesCS7D01G265700 | chr6B | 90.621 | 789 | 50 | 11 | 2363 | 3151 | 560659214 | 560659978 | 0.000000e+00 | 1026.0 |
14 | TraesCS7D01G265700 | chr6B | 90.196 | 510 | 22 | 2 | 2363 | 2870 | 560636568 | 560637051 | 1.710000e-179 | 640.0 |
15 | TraesCS7D01G265700 | chr6B | 93.624 | 298 | 17 | 2 | 2854 | 3151 | 560638765 | 560639060 | 1.440000e-120 | 444.0 |
16 | TraesCS7D01G265700 | chr6B | 93.878 | 98 | 6 | 0 | 3056 | 3153 | 330958553 | 330958650 | 1.260000e-31 | 148.0 |
17 | TraesCS7D01G265700 | chr3B | 90.621 | 789 | 49 | 12 | 2363 | 3151 | 510796075 | 510795312 | 0.000000e+00 | 1024.0 |
18 | TraesCS7D01G265700 | chr3B | 89.849 | 463 | 18 | 3 | 2363 | 2823 | 733428184 | 733427749 | 8.160000e-158 | 568.0 |
19 | TraesCS7D01G265700 | chr3B | 91.667 | 48 | 3 | 1 | 5257 | 5304 | 143073568 | 143073614 | 1.310000e-06 | 65.8 |
20 | TraesCS7D01G265700 | chr3A | 87.975 | 790 | 47 | 16 | 2364 | 3153 | 575759378 | 575760119 | 0.000000e+00 | 889.0 |
21 | TraesCS7D01G265700 | chr3A | 87.264 | 793 | 39 | 9 | 2363 | 3153 | 556337913 | 556338645 | 0.000000e+00 | 848.0 |
22 | TraesCS7D01G265700 | chr3A | 89.103 | 156 | 15 | 2 | 5005 | 5159 | 601382890 | 601382736 | 5.740000e-45 | 193.0 |
23 | TraesCS7D01G265700 | chr3A | 89.333 | 150 | 15 | 1 | 5006 | 5154 | 694963555 | 694963406 | 2.670000e-43 | 187.0 |
24 | TraesCS7D01G265700 | chr2A | 87.611 | 791 | 50 | 16 | 2363 | 3153 | 746820554 | 746819812 | 0.000000e+00 | 874.0 |
25 | TraesCS7D01G265700 | chr2A | 87.358 | 791 | 52 | 16 | 2363 | 3153 | 676167847 | 676167105 | 0.000000e+00 | 863.0 |
26 | TraesCS7D01G265700 | chr2A | 84.848 | 66 | 10 | 0 | 5239 | 5304 | 416913871 | 416913806 | 3.630000e-07 | 67.6 |
27 | TraesCS7D01G265700 | chr4A | 89.853 | 680 | 45 | 11 | 2363 | 3042 | 730752760 | 730752105 | 0.000000e+00 | 852.0 |
28 | TraesCS7D01G265700 | chr4A | 94.531 | 128 | 7 | 0 | 3026 | 3153 | 730752087 | 730751960 | 1.230000e-46 | 198.0 |
29 | TraesCS7D01G265700 | chr4A | 86.207 | 87 | 10 | 2 | 5469 | 5553 | 740268461 | 740268375 | 5.990000e-15 | 93.5 |
30 | TraesCS7D01G265700 | chr4A | 86.207 | 87 | 10 | 2 | 5469 | 5553 | 740345866 | 740345780 | 5.990000e-15 | 93.5 |
31 | TraesCS7D01G265700 | chr4A | 89.130 | 46 | 1 | 4 | 5253 | 5296 | 742450316 | 742450359 | 3.000000e-03 | 54.7 |
32 | TraesCS7D01G265700 | chr5A | 88.913 | 460 | 21 | 3 | 2363 | 2818 | 324689097 | 324689530 | 1.780000e-149 | 540.0 |
33 | TraesCS7D01G265700 | chr5A | 92.784 | 291 | 21 | 0 | 2863 | 3153 | 324689530 | 324689820 | 6.720000e-114 | 422.0 |
34 | TraesCS7D01G265700 | chr5A | 76.959 | 217 | 32 | 12 | 5392 | 5597 | 487669673 | 487669464 | 2.140000e-19 | 108.0 |
35 | TraesCS7D01G265700 | chr5D | 89.172 | 157 | 14 | 3 | 5005 | 5160 | 380078775 | 380078929 | 5.740000e-45 | 193.0 |
36 | TraesCS7D01G265700 | chr5D | 88.387 | 155 | 16 | 2 | 5005 | 5158 | 76972625 | 76972472 | 9.600000e-43 | 185.0 |
37 | TraesCS7D01G265700 | chr5D | 77.682 | 233 | 46 | 6 | 5313 | 5540 | 120787568 | 120787337 | 2.730000e-28 | 137.0 |
38 | TraesCS7D01G265700 | chr4D | 88.679 | 159 | 15 | 3 | 4998 | 5154 | 447293818 | 447293661 | 2.060000e-44 | 191.0 |
39 | TraesCS7D01G265700 | chr4D | 88.742 | 151 | 16 | 1 | 5005 | 5154 | 351463646 | 351463796 | 3.450000e-42 | 183.0 |
40 | TraesCS7D01G265700 | chr3D | 88.889 | 153 | 16 | 1 | 5004 | 5155 | 529127160 | 529127312 | 2.670000e-43 | 187.0 |
41 | TraesCS7D01G265700 | chr3D | 95.833 | 48 | 2 | 0 | 3890 | 3937 | 112723432 | 112723385 | 1.680000e-10 | 78.7 |
42 | TraesCS7D01G265700 | chr1D | 87.898 | 157 | 18 | 1 | 5003 | 5158 | 325676748 | 325676904 | 3.450000e-42 | 183.0 |
43 | TraesCS7D01G265700 | chr1D | 87.742 | 155 | 17 | 2 | 5002 | 5154 | 452901853 | 452901699 | 4.470000e-41 | 180.0 |
44 | TraesCS7D01G265700 | chr1D | 78.838 | 241 | 43 | 5 | 5349 | 5587 | 372522782 | 372522548 | 7.530000e-34 | 156.0 |
45 | TraesCS7D01G265700 | chr1A | 78.039 | 255 | 41 | 9 | 5349 | 5597 | 471933156 | 471932911 | 4.530000e-31 | 147.0 |
46 | TraesCS7D01G265700 | chr1A | 81.034 | 116 | 14 | 4 | 5239 | 5346 | 66726588 | 66726703 | 1.000000e-12 | 86.1 |
47 | TraesCS7D01G265700 | chr6D | 80.380 | 158 | 22 | 6 | 5239 | 5387 | 57466748 | 57466591 | 1.650000e-20 | 111.0 |
48 | TraesCS7D01G265700 | chr6D | 90.000 | 60 | 6 | 0 | 5237 | 5296 | 263488263 | 263488204 | 1.680000e-10 | 78.7 |
49 | TraesCS7D01G265700 | chr2D | 76.233 | 223 | 45 | 6 | 5322 | 5540 | 629506016 | 629505798 | 1.650000e-20 | 111.0 |
50 | TraesCS7D01G265700 | chr4B | 96.154 | 52 | 1 | 1 | 3887 | 3937 | 195465684 | 195465735 | 3.600000e-12 | 84.2 |
51 | TraesCS7D01G265700 | chr1B | 79.439 | 107 | 15 | 6 | 5251 | 5350 | 671254038 | 671253932 | 1.010000e-07 | 69.4 |
52 | TraesCS7D01G265700 | chr6A | 86.538 | 52 | 7 | 0 | 5239 | 5290 | 70968386 | 70968437 | 2.180000e-04 | 58.4 |
53 | TraesCS7D01G265700 | chrUn | 94.286 | 35 | 2 | 0 | 5270 | 5304 | 7481352 | 7481318 | 3.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G265700 | chr7D | 247312057 | 247317670 | 5613 | True | 10368.000000 | 10368 | 100.000000 | 1 | 5614 | 1 | chr7D.!!$R1 | 5613 |
1 | TraesCS7D01G265700 | chr7B | 223711726 | 223716300 | 4574 | True | 2470.666667 | 5507 | 95.485667 | 204 | 4783 | 3 | chr7B.!!$R2 | 4579 |
2 | TraesCS7D01G265700 | chr7B | 606360286 | 606361047 | 761 | False | 1044.000000 | 1044 | 91.128000 | 2363 | 3151 | 1 | chr7B.!!$F1 | 788 |
3 | TraesCS7D01G265700 | chr7B | 223702230 | 223702870 | 640 | True | 461.500000 | 680 | 91.802000 | 4823 | 5614 | 2 | chr7B.!!$R1 | 791 |
4 | TraesCS7D01G265700 | chr7A | 264845551 | 264851004 | 5453 | True | 2060.000000 | 3834 | 94.089250 | 1 | 5005 | 4 | chr7A.!!$R1 | 5004 |
5 | TraesCS7D01G265700 | chr6B | 560659214 | 560659978 | 764 | False | 1026.000000 | 1026 | 90.621000 | 2363 | 3151 | 1 | chr6B.!!$F2 | 788 |
6 | TraesCS7D01G265700 | chr6B | 560636568 | 560639060 | 2492 | False | 542.000000 | 640 | 91.910000 | 2363 | 3151 | 2 | chr6B.!!$F3 | 788 |
7 | TraesCS7D01G265700 | chr3B | 510795312 | 510796075 | 763 | True | 1024.000000 | 1024 | 90.621000 | 2363 | 3151 | 1 | chr3B.!!$R1 | 788 |
8 | TraesCS7D01G265700 | chr3A | 575759378 | 575760119 | 741 | False | 889.000000 | 889 | 87.975000 | 2364 | 3153 | 1 | chr3A.!!$F2 | 789 |
9 | TraesCS7D01G265700 | chr3A | 556337913 | 556338645 | 732 | False | 848.000000 | 848 | 87.264000 | 2363 | 3153 | 1 | chr3A.!!$F1 | 790 |
10 | TraesCS7D01G265700 | chr2A | 746819812 | 746820554 | 742 | True | 874.000000 | 874 | 87.611000 | 2363 | 3153 | 1 | chr2A.!!$R3 | 790 |
11 | TraesCS7D01G265700 | chr2A | 676167105 | 676167847 | 742 | True | 863.000000 | 863 | 87.358000 | 2363 | 3153 | 1 | chr2A.!!$R2 | 790 |
12 | TraesCS7D01G265700 | chr4A | 730751960 | 730752760 | 800 | True | 525.000000 | 852 | 92.192000 | 2363 | 3153 | 2 | chr4A.!!$R3 | 790 |
13 | TraesCS7D01G265700 | chr5A | 324689097 | 324689820 | 723 | False | 481.000000 | 540 | 90.848500 | 2363 | 3153 | 2 | chr5A.!!$F1 | 790 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
620 | 961 | 0.179181 | CGGCATGATCTGTTGTGCAC | 60.179 | 55.000 | 10.75 | 10.75 | 39.27 | 4.57 | F |
1192 | 1548 | 0.251386 | TCGCTCACTCTCCTCAGGTT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 | F |
1644 | 2000 | 1.467734 | GGAAAGCTCTGTCATGCACTG | 59.532 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 | F |
3142 | 5417 | 0.182061 | CAGCAGGGTATCATGTGCCT | 59.818 | 55.000 | 0.50 | 0.00 | 36.54 | 4.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1644 | 2000 | 4.681744 | TCTCAAAACCATTTGTCACAAGC | 58.318 | 39.130 | 0.00 | 0.00 | 45.02 | 4.01 | R |
3142 | 5417 | 1.970640 | ACACAGTGATACAGGTGAGCA | 59.029 | 47.619 | 7.81 | 0.00 | 35.33 | 4.26 | R |
3407 | 5682 | 0.689055 | AGACAATGGAGCTGACAGCA | 59.311 | 50.000 | 28.43 | 9.35 | 45.56 | 4.41 | R |
5084 | 7396 | 0.039074 | AAGAGACTTCGTGAGCACCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 2.267324 | GCCTCCAGTCAGCAGTCC | 59.733 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
38 | 39 | 4.087892 | CCAGTCAGCAGTCCCCCG | 62.088 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
143 | 152 | 3.256558 | ACTAACCGTCAAGGCGTATTTC | 58.743 | 45.455 | 0.00 | 0.00 | 46.52 | 2.17 |
163 | 172 | 9.074576 | GTATTTCCTATTGGTGGTAAATAAGGG | 57.925 | 37.037 | 0.00 | 0.00 | 34.23 | 3.95 |
186 | 195 | 1.340114 | CCCTAGCTTTCCCAGGTTGTC | 60.340 | 57.143 | 0.00 | 0.00 | 34.13 | 3.18 |
195 | 204 | 1.666872 | CCAGGTTGTCGTTCGTCCC | 60.667 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
259 | 272 | 6.254281 | TCAATATCGTCGATCATTAGCTCA | 57.746 | 37.500 | 11.82 | 0.00 | 0.00 | 4.26 |
496 | 801 | 9.358872 | GCTTCCATAAAGAAAAGAAATCGAATT | 57.641 | 29.630 | 0.00 | 0.00 | 37.12 | 2.17 |
620 | 961 | 0.179181 | CGGCATGATCTGTTGTGCAC | 60.179 | 55.000 | 10.75 | 10.75 | 39.27 | 4.57 |
766 | 1122 | 3.864243 | ACTCTTGTCGGTGTGTTGTTTA | 58.136 | 40.909 | 0.00 | 0.00 | 0.00 | 2.01 |
793 | 1149 | 9.791820 | CATTCTCTGTGTGCAAAAATATAATCA | 57.208 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
811 | 1167 | 9.985730 | ATATAATCATGGTTTTGTTATTGCTGG | 57.014 | 29.630 | 0.00 | 0.00 | 0.00 | 4.85 |
1066 | 1422 | 6.091123 | CTTTCCCTGAAAGTAAATACGTCG | 57.909 | 41.667 | 8.13 | 0.00 | 42.61 | 5.12 |
1192 | 1548 | 0.251386 | TCGCTCACTCTCCTCAGGTT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1644 | 2000 | 1.467734 | GGAAAGCTCTGTCATGCACTG | 59.532 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
1968 | 2324 | 3.758554 | ACTGTGACATTCATGGTTTAGGC | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 3.93 |
2664 | 3022 | 5.409643 | ACGAGTCACATTTTGAAACTGAG | 57.590 | 39.130 | 2.14 | 0.00 | 35.39 | 3.35 |
2895 | 5088 | 3.221771 | AGCCACTTAATGTGCAACTGAA | 58.778 | 40.909 | 0.00 | 0.00 | 44.92 | 3.02 |
3096 | 5371 | 3.259902 | CCGAACTTACTAACCCAGCTTC | 58.740 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3142 | 5417 | 0.182061 | CAGCAGGGTATCATGTGCCT | 59.818 | 55.000 | 0.50 | 0.00 | 36.54 | 4.75 |
3188 | 5463 | 4.021544 | GTCATGGGAATGTAAAACCAGCAA | 60.022 | 41.667 | 0.00 | 0.00 | 36.27 | 3.91 |
3356 | 5631 | 3.585862 | TGTCATCTCACTAAAACTCGGC | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
3407 | 5682 | 8.571336 | CAAGTGATTGTTGAATTTCTAGAGGTT | 58.429 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
3479 | 5754 | 7.347252 | AGGATTCCTCTCCCTTTTGTATTTAC | 58.653 | 38.462 | 0.00 | 0.00 | 35.79 | 2.01 |
3490 | 5765 | 5.571357 | CCTTTTGTATTTACGTCACATTGGC | 59.429 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3579 | 5854 | 7.733773 | TTTGAGAGGAGAAGGTACATGAATA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3634 | 5909 | 3.131933 | GCTGACTACATCCACTCTGTGAT | 59.868 | 47.826 | 0.00 | 0.00 | 35.23 | 3.06 |
3880 | 6164 | 8.428852 | TGGCTCTTGTGTCTTATAGCATTATTA | 58.571 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3916 | 6200 | 3.118592 | TGTTTGGTTGGGCTTTTACTTGG | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
3917 | 6201 | 1.044611 | TGGTTGGGCTTTTACTTGGC | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3923 | 6207 | 3.040147 | GGGCTTTTACTTGGCCTTTTC | 57.960 | 47.619 | 3.32 | 0.00 | 44.70 | 2.29 |
3924 | 6208 | 2.367241 | GGGCTTTTACTTGGCCTTTTCA | 59.633 | 45.455 | 3.32 | 0.00 | 44.70 | 2.69 |
3925 | 6209 | 3.390135 | GGCTTTTACTTGGCCTTTTCAC | 58.610 | 45.455 | 3.32 | 0.00 | 42.31 | 3.18 |
3975 | 6259 | 5.512753 | TTCAAGCTTCAGCAACAATGTTA | 57.487 | 34.783 | 0.00 | 0.00 | 45.16 | 2.41 |
4156 | 6440 | 2.565210 | TTGTGTTCAAGCTTGCAGTG | 57.435 | 45.000 | 21.99 | 0.00 | 0.00 | 3.66 |
4246 | 6530 | 2.600769 | ACCGTCGCTGGACCTCTT | 60.601 | 61.111 | 0.00 | 0.00 | 40.17 | 2.85 |
4261 | 6545 | 1.354368 | CCTCTTACAAAGCCCCTTCCA | 59.646 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
4286 | 6570 | 3.193691 | AGGTAGTCGACACCATCTCTTTG | 59.806 | 47.826 | 27.63 | 0.00 | 38.62 | 2.77 |
4317 | 6601 | 6.561902 | CGATTTCAGCATCTCGAGATTTTCTC | 60.562 | 42.308 | 25.25 | 13.60 | 40.06 | 2.87 |
4343 | 6627 | 1.893808 | CAACAGCCAGCGGTGACTT | 60.894 | 57.895 | 17.83 | 0.00 | 40.02 | 3.01 |
4344 | 6628 | 1.152963 | AACAGCCAGCGGTGACTTT | 60.153 | 52.632 | 17.83 | 0.00 | 40.02 | 2.66 |
4369 | 6653 | 1.402896 | CCGGGAGAGCTTATGAGGCA | 61.403 | 60.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4372 | 6656 | 0.249657 | GGAGAGCTTATGAGGCACCG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4479 | 6767 | 3.781770 | GAGGCTCGGCTGTGGATCG | 62.782 | 68.421 | 0.00 | 0.00 | 0.00 | 3.69 |
4536 | 6824 | 4.478317 | AGATAACCCCCATCAAGTCAATGA | 59.522 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4691 | 6987 | 7.560991 | AGAACATAATCTGATATTTGTGGGCAA | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
4752 | 7049 | 2.937519 | TGTGGCTGTTGTTATGGTGAA | 58.062 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
4797 | 7095 | 0.616679 | TTCTTGAGTAGACCCGGGGG | 60.617 | 60.000 | 27.92 | 5.70 | 42.03 | 5.40 |
4834 | 7133 | 4.225042 | AGCAGAGGTGGTTATGTAATGTGA | 59.775 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
4898 | 7197 | 1.739067 | ATGCAAGACGCTAAGAACCC | 58.261 | 50.000 | 0.00 | 0.00 | 43.06 | 4.11 |
4977 | 7289 | 0.166814 | CTGTTTCAACGCTAGCCTGC | 59.833 | 55.000 | 9.66 | 0.00 | 0.00 | 4.85 |
4978 | 7290 | 0.533978 | TGTTTCAACGCTAGCCTGCA | 60.534 | 50.000 | 9.66 | 0.00 | 0.00 | 4.41 |
4995 | 7307 | 1.467920 | GCAGCTGCACTTAATTCCCT | 58.532 | 50.000 | 33.36 | 0.00 | 41.59 | 4.20 |
4996 | 7308 | 1.403323 | GCAGCTGCACTTAATTCCCTC | 59.597 | 52.381 | 33.36 | 0.00 | 41.59 | 4.30 |
4997 | 7309 | 2.943199 | GCAGCTGCACTTAATTCCCTCT | 60.943 | 50.000 | 33.36 | 0.00 | 41.59 | 3.69 |
4998 | 7310 | 3.350833 | CAGCTGCACTTAATTCCCTCTT | 58.649 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4999 | 7311 | 3.760684 | CAGCTGCACTTAATTCCCTCTTT | 59.239 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
5000 | 7312 | 4.219288 | CAGCTGCACTTAATTCCCTCTTTT | 59.781 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
5001 | 7313 | 4.835056 | AGCTGCACTTAATTCCCTCTTTTT | 59.165 | 37.500 | 1.02 | 0.00 | 0.00 | 1.94 |
5002 | 7314 | 4.925646 | GCTGCACTTAATTCCCTCTTTTTG | 59.074 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
5003 | 7315 | 4.881920 | TGCACTTAATTCCCTCTTTTTGC | 58.118 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
5004 | 7316 | 3.920412 | GCACTTAATTCCCTCTTTTTGCG | 59.080 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
5005 | 7317 | 4.320935 | GCACTTAATTCCCTCTTTTTGCGA | 60.321 | 41.667 | 0.00 | 0.00 | 0.00 | 5.10 |
5006 | 7318 | 5.393962 | CACTTAATTCCCTCTTTTTGCGAG | 58.606 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
5007 | 7319 | 4.459337 | ACTTAATTCCCTCTTTTTGCGAGG | 59.541 | 41.667 | 0.00 | 0.00 | 46.11 | 4.63 |
5013 | 7325 | 1.098050 | CTCTTTTTGCGAGGATGGGG | 58.902 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5014 | 7326 | 0.965363 | TCTTTTTGCGAGGATGGGGC | 60.965 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
5015 | 7327 | 2.270297 | CTTTTTGCGAGGATGGGGCG | 62.270 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5016 | 7328 | 3.561120 | TTTTGCGAGGATGGGGCGT | 62.561 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
5017 | 7329 | 3.561120 | TTTGCGAGGATGGGGCGTT | 62.561 | 57.895 | 0.00 | 0.00 | 0.00 | 4.84 |
5018 | 7330 | 4.776322 | TGCGAGGATGGGGCGTTG | 62.776 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
5019 | 7331 | 4.467084 | GCGAGGATGGGGCGTTGA | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
5020 | 7332 | 2.505982 | CGAGGATGGGGCGTTGAT | 59.494 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
5021 | 7333 | 1.595382 | CGAGGATGGGGCGTTGATC | 60.595 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
5022 | 7334 | 1.227973 | GAGGATGGGGCGTTGATCC | 60.228 | 63.158 | 0.00 | 0.00 | 36.63 | 3.36 |
5023 | 7335 | 2.591715 | GGATGGGGCGTTGATCCG | 60.592 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
5024 | 7336 | 2.189521 | GATGGGGCGTTGATCCGT | 59.810 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
5025 | 7337 | 1.451387 | GATGGGGCGTTGATCCGTT | 60.451 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
5026 | 7338 | 1.714899 | GATGGGGCGTTGATCCGTTG | 61.715 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5027 | 7339 | 3.131478 | GGGGCGTTGATCCGTTGG | 61.131 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
5028 | 7340 | 2.359478 | GGGCGTTGATCCGTTGGT | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
5029 | 7341 | 1.969589 | GGGCGTTGATCCGTTGGTT | 60.970 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
5030 | 7342 | 1.209127 | GGCGTTGATCCGTTGGTTG | 59.791 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
5031 | 7343 | 1.209127 | GCGTTGATCCGTTGGTTGG | 59.791 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
5032 | 7344 | 1.873165 | CGTTGATCCGTTGGTTGGG | 59.127 | 57.895 | 0.00 | 0.00 | 0.00 | 4.12 |
5033 | 7345 | 1.584495 | GTTGATCCGTTGGTTGGGC | 59.416 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
5034 | 7346 | 1.151679 | TTGATCCGTTGGTTGGGCA | 59.848 | 52.632 | 0.00 | 0.00 | 0.00 | 5.36 |
5035 | 7347 | 0.251564 | TTGATCCGTTGGTTGGGCAT | 60.252 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5036 | 7348 | 0.679640 | TGATCCGTTGGTTGGGCATC | 60.680 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
5037 | 7349 | 1.379843 | ATCCGTTGGTTGGGCATCC | 60.380 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
5038 | 7350 | 2.148723 | ATCCGTTGGTTGGGCATCCA | 62.149 | 55.000 | 0.00 | 0.00 | 42.25 | 3.41 |
5046 | 7358 | 2.853316 | TGGGCATCCAAGGTTGCT | 59.147 | 55.556 | 18.60 | 0.00 | 40.73 | 3.91 |
5047 | 7359 | 1.607178 | TGGGCATCCAAGGTTGCTG | 60.607 | 57.895 | 18.60 | 0.00 | 40.73 | 4.41 |
5048 | 7360 | 2.575461 | GGCATCCAAGGTTGCTGC | 59.425 | 61.111 | 18.60 | 7.09 | 39.84 | 5.25 |
5049 | 7361 | 2.575461 | GCATCCAAGGTTGCTGCC | 59.425 | 61.111 | 13.52 | 0.00 | 37.71 | 4.85 |
5050 | 7362 | 2.277591 | GCATCCAAGGTTGCTGCCA | 61.278 | 57.895 | 13.52 | 0.00 | 37.71 | 4.92 |
5051 | 7363 | 1.888018 | CATCCAAGGTTGCTGCCAG | 59.112 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
5052 | 7364 | 1.980772 | ATCCAAGGTTGCTGCCAGC | 60.981 | 57.895 | 10.45 | 10.45 | 42.82 | 4.85 |
5053 | 7365 | 3.688159 | CCAAGGTTGCTGCCAGCC | 61.688 | 66.667 | 15.29 | 0.00 | 41.51 | 4.85 |
5054 | 7366 | 3.688159 | CAAGGTTGCTGCCAGCCC | 61.688 | 66.667 | 15.29 | 9.16 | 42.79 | 5.19 |
5055 | 7367 | 4.223125 | AAGGTTGCTGCCAGCCCA | 62.223 | 61.111 | 15.29 | 0.00 | 42.79 | 5.36 |
5056 | 7368 | 4.982701 | AGGTTGCTGCCAGCCCAC | 62.983 | 66.667 | 15.29 | 10.81 | 42.79 | 4.61 |
5065 | 7377 | 4.760047 | CCAGCCCACCCGAGTTCG | 62.760 | 72.222 | 0.00 | 0.00 | 39.44 | 3.95 |
5066 | 7378 | 3.691342 | CAGCCCACCCGAGTTCGA | 61.691 | 66.667 | 2.59 | 0.00 | 43.02 | 3.71 |
5067 | 7379 | 3.382832 | AGCCCACCCGAGTTCGAG | 61.383 | 66.667 | 2.59 | 0.00 | 43.02 | 4.04 |
5068 | 7380 | 3.692406 | GCCCACCCGAGTTCGAGT | 61.692 | 66.667 | 2.59 | 0.00 | 43.02 | 4.18 |
5069 | 7381 | 2.572284 | CCCACCCGAGTTCGAGTC | 59.428 | 66.667 | 2.59 | 0.00 | 43.02 | 3.36 |
5070 | 7382 | 2.572284 | CCACCCGAGTTCGAGTCC | 59.428 | 66.667 | 2.59 | 0.00 | 43.02 | 3.85 |
5071 | 7383 | 2.572284 | CACCCGAGTTCGAGTCCC | 59.428 | 66.667 | 2.59 | 0.00 | 43.02 | 4.46 |
5072 | 7384 | 3.060615 | ACCCGAGTTCGAGTCCCG | 61.061 | 66.667 | 2.59 | 0.00 | 43.02 | 5.14 |
5073 | 7385 | 3.823330 | CCCGAGTTCGAGTCCCGG | 61.823 | 72.222 | 2.59 | 0.00 | 43.02 | 5.73 |
5074 | 7386 | 4.493747 | CCGAGTTCGAGTCCCGGC | 62.494 | 72.222 | 0.00 | 0.00 | 43.02 | 6.13 |
5075 | 7387 | 3.744719 | CGAGTTCGAGTCCCGGCA | 61.745 | 66.667 | 0.00 | 0.00 | 43.02 | 5.69 |
5076 | 7388 | 2.893398 | GAGTTCGAGTCCCGGCAT | 59.107 | 61.111 | 0.00 | 0.00 | 39.14 | 4.40 |
5077 | 7389 | 1.519455 | GAGTTCGAGTCCCGGCATG | 60.519 | 63.158 | 0.00 | 0.00 | 39.14 | 4.06 |
5078 | 7390 | 2.511600 | GTTCGAGTCCCGGCATGG | 60.512 | 66.667 | 0.00 | 0.00 | 39.14 | 3.66 |
5079 | 7391 | 2.682136 | TTCGAGTCCCGGCATGGA | 60.682 | 61.111 | 0.00 | 0.00 | 42.00 | 3.41 |
5099 | 7411 | 3.470567 | CGCGGTGCTCACGAAGTC | 61.471 | 66.667 | 0.00 | 0.00 | 41.61 | 3.01 |
5100 | 7412 | 2.049063 | GCGGTGCTCACGAAGTCT | 60.049 | 61.111 | 0.00 | 0.00 | 41.61 | 3.24 |
5101 | 7413 | 2.089349 | GCGGTGCTCACGAAGTCTC | 61.089 | 63.158 | 0.00 | 0.00 | 41.61 | 3.36 |
5102 | 7414 | 1.581954 | CGGTGCTCACGAAGTCTCT | 59.418 | 57.895 | 0.00 | 0.00 | 41.61 | 3.10 |
5103 | 7415 | 0.039074 | CGGTGCTCACGAAGTCTCTT | 60.039 | 55.000 | 0.00 | 0.00 | 41.61 | 2.85 |
5104 | 7416 | 1.704070 | GGTGCTCACGAAGTCTCTTC | 58.296 | 55.000 | 0.00 | 0.03 | 41.61 | 2.87 |
5105 | 7417 | 1.271102 | GGTGCTCACGAAGTCTCTTCT | 59.729 | 52.381 | 7.70 | 0.00 | 41.61 | 2.85 |
5106 | 7418 | 2.488545 | GGTGCTCACGAAGTCTCTTCTA | 59.511 | 50.000 | 7.70 | 0.00 | 41.61 | 2.10 |
5107 | 7419 | 3.129638 | GGTGCTCACGAAGTCTCTTCTAT | 59.870 | 47.826 | 7.70 | 0.00 | 41.61 | 1.98 |
5108 | 7420 | 4.335874 | GGTGCTCACGAAGTCTCTTCTATA | 59.664 | 45.833 | 7.70 | 0.00 | 41.61 | 1.31 |
5109 | 7421 | 5.163642 | GGTGCTCACGAAGTCTCTTCTATAA | 60.164 | 44.000 | 7.70 | 0.00 | 41.61 | 0.98 |
5110 | 7422 | 6.323266 | GTGCTCACGAAGTCTCTTCTATAAA | 58.677 | 40.000 | 7.70 | 0.00 | 41.61 | 1.40 |
5111 | 7423 | 6.470877 | GTGCTCACGAAGTCTCTTCTATAAAG | 59.529 | 42.308 | 7.70 | 0.00 | 41.61 | 1.85 |
5112 | 7424 | 6.374613 | TGCTCACGAAGTCTCTTCTATAAAGA | 59.625 | 38.462 | 7.70 | 0.00 | 41.61 | 2.52 |
5113 | 7425 | 7.094334 | TGCTCACGAAGTCTCTTCTATAAAGAA | 60.094 | 37.037 | 7.70 | 0.00 | 41.61 | 2.52 |
5114 | 7426 | 7.755822 | GCTCACGAAGTCTCTTCTATAAAGAAA | 59.244 | 37.037 | 7.70 | 0.00 | 41.61 | 2.52 |
5115 | 7427 | 9.627395 | CTCACGAAGTCTCTTCTATAAAGAAAA | 57.373 | 33.333 | 7.70 | 0.00 | 41.61 | 2.29 |
5116 | 7428 | 9.627395 | TCACGAAGTCTCTTCTATAAAGAAAAG | 57.373 | 33.333 | 7.70 | 0.00 | 41.61 | 2.27 |
5117 | 7429 | 8.376942 | CACGAAGTCTCTTCTATAAAGAAAAGC | 58.623 | 37.037 | 7.70 | 0.00 | 41.61 | 3.51 |
5118 | 7430 | 7.546316 | ACGAAGTCTCTTCTATAAAGAAAAGCC | 59.454 | 37.037 | 7.70 | 0.00 | 37.49 | 4.35 |
5119 | 7431 | 7.545965 | CGAAGTCTCTTCTATAAAGAAAAGCCA | 59.454 | 37.037 | 7.70 | 0.00 | 41.19 | 4.75 |
5120 | 7432 | 9.220767 | GAAGTCTCTTCTATAAAGAAAAGCCAA | 57.779 | 33.333 | 2.71 | 0.00 | 41.19 | 4.52 |
5121 | 7433 | 8.554835 | AGTCTCTTCTATAAAGAAAAGCCAAC | 57.445 | 34.615 | 0.00 | 0.00 | 41.19 | 3.77 |
5122 | 7434 | 8.157476 | AGTCTCTTCTATAAAGAAAAGCCAACA | 58.843 | 33.333 | 0.00 | 0.00 | 41.19 | 3.33 |
5123 | 7435 | 8.784043 | GTCTCTTCTATAAAGAAAAGCCAACAA | 58.216 | 33.333 | 0.00 | 0.00 | 41.19 | 2.83 |
5124 | 7436 | 9.003658 | TCTCTTCTATAAAGAAAAGCCAACAAG | 57.996 | 33.333 | 0.00 | 0.00 | 41.19 | 3.16 |
5125 | 7437 | 8.110860 | TCTTCTATAAAGAAAAGCCAACAAGG | 57.889 | 34.615 | 0.00 | 0.00 | 41.19 | 3.61 |
5126 | 7438 | 7.942341 | TCTTCTATAAAGAAAAGCCAACAAGGA | 59.058 | 33.333 | 0.00 | 0.00 | 41.19 | 3.36 |
5127 | 7439 | 8.650143 | TTCTATAAAGAAAAGCCAACAAGGAT | 57.350 | 30.769 | 0.00 | 0.00 | 38.81 | 3.24 |
5128 | 7440 | 9.747898 | TTCTATAAAGAAAAGCCAACAAGGATA | 57.252 | 29.630 | 0.00 | 0.00 | 38.81 | 2.59 |
5129 | 7441 | 9.396022 | TCTATAAAGAAAAGCCAACAAGGATAG | 57.604 | 33.333 | 0.00 | 0.00 | 41.22 | 2.08 |
5130 | 7442 | 4.790765 | AAGAAAAGCCAACAAGGATAGC | 57.209 | 40.909 | 0.00 | 0.00 | 41.22 | 2.97 |
5131 | 7443 | 3.092301 | AGAAAAGCCAACAAGGATAGCC | 58.908 | 45.455 | 0.00 | 0.00 | 41.22 | 3.93 |
5132 | 7444 | 1.852633 | AAAGCCAACAAGGATAGCCC | 58.147 | 50.000 | 0.00 | 0.00 | 41.22 | 5.19 |
5141 | 7453 | 2.321720 | AGGATAGCCCTTGGGTTGG | 58.678 | 57.895 | 7.61 | 0.00 | 44.85 | 3.77 |
5142 | 7454 | 0.552615 | AGGATAGCCCTTGGGTTGGT | 60.553 | 55.000 | 7.61 | 0.00 | 44.85 | 3.67 |
5143 | 7455 | 0.106669 | GGATAGCCCTTGGGTTGGTC | 60.107 | 60.000 | 7.61 | 4.70 | 34.28 | 4.02 |
5144 | 7456 | 0.919710 | GATAGCCCTTGGGTTGGTCT | 59.080 | 55.000 | 7.61 | 0.00 | 34.28 | 3.85 |
5145 | 7457 | 1.285078 | GATAGCCCTTGGGTTGGTCTT | 59.715 | 52.381 | 7.61 | 0.00 | 34.28 | 3.01 |
5146 | 7458 | 2.047769 | TAGCCCTTGGGTTGGTCTTA | 57.952 | 50.000 | 7.61 | 0.00 | 34.28 | 2.10 |
5147 | 7459 | 1.382914 | AGCCCTTGGGTTGGTCTTAT | 58.617 | 50.000 | 7.61 | 0.00 | 0.00 | 1.73 |
5148 | 7460 | 1.716503 | AGCCCTTGGGTTGGTCTTATT | 59.283 | 47.619 | 7.61 | 0.00 | 0.00 | 1.40 |
5149 | 7461 | 2.111792 | AGCCCTTGGGTTGGTCTTATTT | 59.888 | 45.455 | 7.61 | 0.00 | 0.00 | 1.40 |
5150 | 7462 | 2.903784 | GCCCTTGGGTTGGTCTTATTTT | 59.096 | 45.455 | 7.61 | 0.00 | 0.00 | 1.82 |
5151 | 7463 | 3.326588 | GCCCTTGGGTTGGTCTTATTTTT | 59.673 | 43.478 | 7.61 | 0.00 | 0.00 | 1.94 |
5247 | 7559 | 2.314323 | GCCAACCATTAGGGCATTTG | 57.686 | 50.000 | 0.00 | 0.00 | 46.92 | 2.32 |
5249 | 7561 | 1.471327 | CCAACCATTAGGGCATTTGCG | 60.471 | 52.381 | 0.00 | 0.00 | 43.26 | 4.85 |
5252 | 7564 | 0.029300 | CCATTAGGGCATTTGCGACG | 59.971 | 55.000 | 0.00 | 0.00 | 43.26 | 5.12 |
5279 | 7591 | 1.798813 | CGCAAAAATCCTTCCGCATCC | 60.799 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5300 | 7612 | 3.072468 | CGCGGACAGGGGGACTAA | 61.072 | 66.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5366 | 7685 | 9.892130 | ATATTTTTAACAACTCAAACCAACCAA | 57.108 | 25.926 | 0.00 | 0.00 | 0.00 | 3.67 |
5391 | 7710 | 6.869315 | TGAAATTCGTGTAAACTGGATGAA | 57.131 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5392 | 7711 | 7.447374 | TGAAATTCGTGTAAACTGGATGAAT | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5512 | 7831 | 1.883084 | CTCATACGCTTGTCCGCCC | 60.883 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
5561 | 7880 | 2.177518 | TGGTCCCTCCAGTCCCTCT | 61.178 | 63.158 | 0.00 | 0.00 | 41.93 | 3.69 |
5580 | 7899 | 2.724358 | GCGACAAAACAACGCCGG | 60.724 | 61.111 | 0.00 | 0.00 | 45.35 | 6.13 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 2.124570 | CCCCTTCGCCTGGTGATG | 60.125 | 66.667 | 11.31 | 13.09 | 0.00 | 3.07 |
143 | 152 | 5.070685 | GCTCCCTTATTTACCACCAATAGG | 58.929 | 45.833 | 0.00 | 0.00 | 42.21 | 2.57 |
244 | 257 | 8.575565 | TTAAACTACATGAGCTAATGATCGAC | 57.424 | 34.615 | 18.56 | 0.00 | 0.00 | 4.20 |
284 | 297 | 9.103861 | CAAAAATTACCAAAAGGCTTTCTACAA | 57.896 | 29.630 | 13.76 | 6.26 | 0.00 | 2.41 |
347 | 360 | 3.198068 | GCATATCAAAGGTCAAGCTCGA | 58.802 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
496 | 801 | 3.162858 | ACGGGGTTTCGTGTGGGA | 61.163 | 61.111 | 0.00 | 0.00 | 42.21 | 4.37 |
620 | 961 | 6.334102 | ACATAGCCTAAGAATAACGAGGAG | 57.666 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
766 | 1122 | 9.793252 | GATTATATTTTTGCACACAGAGAATGT | 57.207 | 29.630 | 0.00 | 0.00 | 45.43 | 2.71 |
793 | 1149 | 3.900601 | TCCACCAGCAATAACAAAACCAT | 59.099 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
811 | 1167 | 1.482182 | GGGGCAATTCTCCATTTCCAC | 59.518 | 52.381 | 0.00 | 0.00 | 29.95 | 4.02 |
1066 | 1422 | 1.915983 | GGGAGATTGGGACAGGGAC | 59.084 | 63.158 | 0.00 | 0.00 | 42.39 | 4.46 |
1644 | 2000 | 4.681744 | TCTCAAAACCATTTGTCACAAGC | 58.318 | 39.130 | 0.00 | 0.00 | 45.02 | 4.01 |
2664 | 3022 | 7.732996 | TCCCTAAAAGAGTGTTGTATATAGCC | 58.267 | 38.462 | 0.00 | 0.00 | 0.00 | 3.93 |
2700 | 3060 | 4.873010 | TCAGGAAGGACTCTGCTACTAAT | 58.127 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2895 | 5088 | 7.886629 | ATAAAATCAGGATAACAGTGTGCAT | 57.113 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3053 | 5246 | 7.798071 | TCGGGGTAAAAATATAACTGTCAGAT | 58.202 | 34.615 | 6.91 | 0.00 | 0.00 | 2.90 |
3096 | 5371 | 5.875359 | AGATTAGTTTAAGCCAGAGAAACCG | 59.125 | 40.000 | 0.00 | 0.00 | 34.31 | 4.44 |
3142 | 5417 | 1.970640 | ACACAGTGATACAGGTGAGCA | 59.029 | 47.619 | 7.81 | 0.00 | 35.33 | 4.26 |
3188 | 5463 | 3.202151 | TCTGGAGTTTGGAACTTTCAGGT | 59.798 | 43.478 | 17.08 | 0.00 | 43.03 | 4.00 |
3356 | 5631 | 5.526846 | TGCAATTTGACCTTTTAAAGCCAAG | 59.473 | 36.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3407 | 5682 | 0.689055 | AGACAATGGAGCTGACAGCA | 59.311 | 50.000 | 28.43 | 9.35 | 45.56 | 4.41 |
3479 | 5754 | 2.490328 | ACAAAGTTGCCAATGTGACG | 57.510 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3490 | 5765 | 9.904647 | CAAAGAACATGACAAATAACAAAGTTG | 57.095 | 29.630 | 0.00 | 0.00 | 39.09 | 3.16 |
3579 | 5854 | 3.077359 | GCACAGCTTTCTGGACAACTAT | 58.923 | 45.455 | 0.00 | 0.00 | 44.54 | 2.12 |
3634 | 5909 | 5.486063 | TGTATGAAAGGTAGAAGGCCAGTAA | 59.514 | 40.000 | 5.01 | 0.00 | 0.00 | 2.24 |
3880 | 6164 | 2.090999 | ACCAAACACCCCCATAGTTTGT | 60.091 | 45.455 | 13.95 | 2.88 | 46.43 | 2.83 |
3917 | 6201 | 9.657419 | AAATTGATATAAGCCAAAGTGAAAAGG | 57.343 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
3920 | 6204 | 8.934825 | GCAAAATTGATATAAGCCAAAGTGAAA | 58.065 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3921 | 6205 | 8.093307 | TGCAAAATTGATATAAGCCAAAGTGAA | 58.907 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
3922 | 6206 | 7.545265 | GTGCAAAATTGATATAAGCCAAAGTGA | 59.455 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3923 | 6207 | 7.546667 | AGTGCAAAATTGATATAAGCCAAAGTG | 59.453 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3924 | 6208 | 7.614494 | AGTGCAAAATTGATATAAGCCAAAGT | 58.386 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
3925 | 6209 | 8.385111 | CAAGTGCAAAATTGATATAAGCCAAAG | 58.615 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
4156 | 6440 | 1.416401 | TCGGAGCCATAGGATTGGTTC | 59.584 | 52.381 | 0.00 | 0.00 | 43.94 | 3.62 |
4246 | 6530 | 1.284785 | CCTGATGGAAGGGGCTTTGTA | 59.715 | 52.381 | 0.00 | 0.00 | 33.28 | 2.41 |
4261 | 6545 | 2.952978 | GAGATGGTGTCGACTACCTGAT | 59.047 | 50.000 | 26.61 | 17.87 | 39.01 | 2.90 |
4286 | 6570 | 2.029728 | CGAGATGCTGAAATCGTCCAAC | 59.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4343 | 6627 | 3.964688 | TCATAAGCTCTCCCGGTGATAAA | 59.035 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
4344 | 6628 | 3.572642 | TCATAAGCTCTCCCGGTGATAA | 58.427 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
4369 | 6653 | 2.515057 | TCACAAGGCAAACGCGGT | 60.515 | 55.556 | 12.47 | 0.00 | 0.00 | 5.68 |
4372 | 6656 | 0.593128 | ATCTGTCACAAGGCAAACGC | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
4536 | 6824 | 3.245016 | TGCATCTTCAAAGGATCACACCT | 60.245 | 43.478 | 0.00 | 0.00 | 42.69 | 4.00 |
4624 | 6912 | 1.003573 | AACCAGGGAGGGAGGCTAG | 59.996 | 63.158 | 0.00 | 0.00 | 43.89 | 3.42 |
4691 | 6987 | 1.675641 | GTTCGCAACTGGGCCAGAT | 60.676 | 57.895 | 38.99 | 26.17 | 35.18 | 2.90 |
4752 | 7049 | 1.352352 | CAACCTGTCCCTTGTCCAGAT | 59.648 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4797 | 7095 | 3.704061 | ACCTCTGCTCTATGTCTTCCTTC | 59.296 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
4834 | 7133 | 3.691609 | GGGATGCTCTTCTTCATCGTTTT | 59.308 | 43.478 | 0.00 | 0.00 | 39.84 | 2.43 |
4947 | 7246 | 0.592637 | TTGAAACAGCAGCCACATCG | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
4977 | 7289 | 2.996631 | AGAGGGAATTAAGTGCAGCTG | 58.003 | 47.619 | 10.11 | 10.11 | 0.00 | 4.24 |
4978 | 7290 | 3.728385 | AAGAGGGAATTAAGTGCAGCT | 57.272 | 42.857 | 0.00 | 0.00 | 0.00 | 4.24 |
4995 | 7307 | 0.965363 | GCCCCATCCTCGCAAAAAGA | 60.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4996 | 7308 | 1.512694 | GCCCCATCCTCGCAAAAAG | 59.487 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
4997 | 7309 | 2.339556 | CGCCCCATCCTCGCAAAAA | 61.340 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
4998 | 7310 | 2.749839 | CGCCCCATCCTCGCAAAA | 60.750 | 61.111 | 0.00 | 0.00 | 0.00 | 2.44 |
4999 | 7311 | 3.561120 | AACGCCCCATCCTCGCAAA | 62.561 | 57.895 | 0.00 | 0.00 | 0.00 | 3.68 |
5000 | 7312 | 4.028490 | AACGCCCCATCCTCGCAA | 62.028 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
5001 | 7313 | 4.776322 | CAACGCCCCATCCTCGCA | 62.776 | 66.667 | 0.00 | 0.00 | 0.00 | 5.10 |
5002 | 7314 | 3.757248 | ATCAACGCCCCATCCTCGC | 62.757 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
5003 | 7315 | 1.595382 | GATCAACGCCCCATCCTCG | 60.595 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
5004 | 7316 | 1.227973 | GGATCAACGCCCCATCCTC | 60.228 | 63.158 | 0.00 | 0.00 | 34.31 | 3.71 |
5005 | 7317 | 2.919043 | GGATCAACGCCCCATCCT | 59.081 | 61.111 | 0.00 | 0.00 | 34.31 | 3.24 |
5006 | 7318 | 2.591715 | CGGATCAACGCCCCATCC | 60.592 | 66.667 | 0.00 | 0.00 | 33.85 | 3.51 |
5007 | 7319 | 1.451387 | AACGGATCAACGCCCCATC | 60.451 | 57.895 | 0.00 | 0.00 | 37.37 | 3.51 |
5008 | 7320 | 1.748879 | CAACGGATCAACGCCCCAT | 60.749 | 57.895 | 0.00 | 0.00 | 37.37 | 4.00 |
5009 | 7321 | 2.359354 | CAACGGATCAACGCCCCA | 60.359 | 61.111 | 0.00 | 0.00 | 37.37 | 4.96 |
5010 | 7322 | 3.131478 | CCAACGGATCAACGCCCC | 61.131 | 66.667 | 0.00 | 0.00 | 37.37 | 5.80 |
5011 | 7323 | 1.969589 | AACCAACGGATCAACGCCC | 60.970 | 57.895 | 0.00 | 0.00 | 37.37 | 6.13 |
5012 | 7324 | 1.209127 | CAACCAACGGATCAACGCC | 59.791 | 57.895 | 0.00 | 0.00 | 37.37 | 5.68 |
5013 | 7325 | 1.209127 | CCAACCAACGGATCAACGC | 59.791 | 57.895 | 0.00 | 0.00 | 37.37 | 4.84 |
5014 | 7326 | 1.873165 | CCCAACCAACGGATCAACG | 59.127 | 57.895 | 0.00 | 0.00 | 40.31 | 4.10 |
5015 | 7327 | 1.175983 | TGCCCAACCAACGGATCAAC | 61.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5016 | 7328 | 0.251564 | ATGCCCAACCAACGGATCAA | 60.252 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5017 | 7329 | 0.679640 | GATGCCCAACCAACGGATCA | 60.680 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
5018 | 7330 | 1.384222 | GGATGCCCAACCAACGGATC | 61.384 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5019 | 7331 | 1.379843 | GGATGCCCAACCAACGGAT | 60.380 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
5020 | 7332 | 2.034999 | GGATGCCCAACCAACGGA | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
5021 | 7333 | 1.876497 | CTTGGATGCCCAACCAACGG | 61.876 | 60.000 | 5.97 | 0.00 | 46.94 | 4.44 |
5022 | 7334 | 1.586028 | CTTGGATGCCCAACCAACG | 59.414 | 57.895 | 5.97 | 0.75 | 46.94 | 4.10 |
5023 | 7335 | 0.831711 | ACCTTGGATGCCCAACCAAC | 60.832 | 55.000 | 5.97 | 0.00 | 46.94 | 3.77 |
5024 | 7336 | 0.105246 | AACCTTGGATGCCCAACCAA | 60.105 | 50.000 | 9.28 | 9.28 | 46.94 | 3.67 |
5025 | 7337 | 0.831288 | CAACCTTGGATGCCCAACCA | 60.831 | 55.000 | 0.00 | 0.00 | 46.94 | 3.67 |
5026 | 7338 | 1.974543 | CAACCTTGGATGCCCAACC | 59.025 | 57.895 | 0.00 | 0.00 | 46.94 | 3.77 |
5027 | 7339 | 1.187567 | AGCAACCTTGGATGCCCAAC | 61.188 | 55.000 | 16.51 | 0.00 | 46.94 | 3.77 |
5029 | 7341 | 1.607178 | CAGCAACCTTGGATGCCCA | 60.607 | 57.895 | 16.51 | 0.00 | 43.57 | 5.36 |
5030 | 7342 | 3.010413 | GCAGCAACCTTGGATGCCC | 62.010 | 63.158 | 16.51 | 6.40 | 43.57 | 5.36 |
5031 | 7343 | 2.575461 | GCAGCAACCTTGGATGCC | 59.425 | 61.111 | 16.51 | 1.15 | 43.57 | 4.40 |
5032 | 7344 | 2.221906 | CTGGCAGCAACCTTGGATGC | 62.222 | 60.000 | 13.05 | 13.05 | 42.87 | 3.91 |
5033 | 7345 | 1.888018 | CTGGCAGCAACCTTGGATG | 59.112 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
5034 | 7346 | 1.980772 | GCTGGCAGCAACCTTGGAT | 60.981 | 57.895 | 33.33 | 0.00 | 41.89 | 3.41 |
5035 | 7347 | 2.598394 | GCTGGCAGCAACCTTGGA | 60.598 | 61.111 | 33.33 | 0.00 | 41.89 | 3.53 |
5036 | 7348 | 3.688159 | GGCTGGCAGCAACCTTGG | 61.688 | 66.667 | 37.49 | 0.50 | 44.75 | 3.61 |
5037 | 7349 | 3.688159 | GGGCTGGCAGCAACCTTG | 61.688 | 66.667 | 37.49 | 1.32 | 44.75 | 3.61 |
5038 | 7350 | 4.223125 | TGGGCTGGCAGCAACCTT | 62.223 | 61.111 | 37.49 | 0.00 | 44.75 | 3.50 |
5039 | 7351 | 4.982701 | GTGGGCTGGCAGCAACCT | 62.983 | 66.667 | 37.49 | 0.00 | 44.75 | 3.50 |
5048 | 7360 | 4.760047 | CGAACTCGGGTGGGCTGG | 62.760 | 72.222 | 0.00 | 0.00 | 35.37 | 4.85 |
5049 | 7361 | 3.649277 | CTCGAACTCGGGTGGGCTG | 62.649 | 68.421 | 0.00 | 0.00 | 40.29 | 4.85 |
5050 | 7362 | 3.382832 | CTCGAACTCGGGTGGGCT | 61.383 | 66.667 | 0.00 | 0.00 | 40.29 | 5.19 |
5056 | 7368 | 3.823330 | CCGGGACTCGAACTCGGG | 61.823 | 72.222 | 18.93 | 0.00 | 46.21 | 5.14 |
5058 | 7370 | 3.064987 | ATGCCGGGACTCGAACTCG | 62.065 | 63.158 | 2.18 | 4.83 | 42.43 | 4.18 |
5059 | 7371 | 1.519455 | CATGCCGGGACTCGAACTC | 60.519 | 63.158 | 2.18 | 0.00 | 42.43 | 3.01 |
5060 | 7372 | 2.579201 | CATGCCGGGACTCGAACT | 59.421 | 61.111 | 2.18 | 0.00 | 42.43 | 3.01 |
5061 | 7373 | 2.511600 | CCATGCCGGGACTCGAAC | 60.512 | 66.667 | 2.18 | 0.00 | 42.43 | 3.95 |
5062 | 7374 | 2.682136 | TCCATGCCGGGACTCGAA | 60.682 | 61.111 | 2.18 | 0.00 | 42.43 | 3.71 |
5083 | 7395 | 2.049063 | AGACTTCGTGAGCACCGC | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
5084 | 7396 | 0.039074 | AAGAGACTTCGTGAGCACCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5085 | 7397 | 1.271102 | AGAAGAGACTTCGTGAGCACC | 59.729 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
5086 | 7398 | 2.715737 | AGAAGAGACTTCGTGAGCAC | 57.284 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5087 | 7399 | 6.374613 | TCTTTATAGAAGAGACTTCGTGAGCA | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
5088 | 7400 | 6.787225 | TCTTTATAGAAGAGACTTCGTGAGC | 58.213 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5089 | 7401 | 9.627395 | TTTTCTTTATAGAAGAGACTTCGTGAG | 57.373 | 33.333 | 0.00 | 0.00 | 41.25 | 3.51 |
5090 | 7402 | 9.627395 | CTTTTCTTTATAGAAGAGACTTCGTGA | 57.373 | 33.333 | 7.45 | 0.00 | 42.39 | 4.35 |
5091 | 7403 | 8.376942 | GCTTTTCTTTATAGAAGAGACTTCGTG | 58.623 | 37.037 | 14.92 | 0.00 | 42.39 | 4.35 |
5092 | 7404 | 7.546316 | GGCTTTTCTTTATAGAAGAGACTTCGT | 59.454 | 37.037 | 14.92 | 0.00 | 43.82 | 3.85 |
5093 | 7405 | 7.545965 | TGGCTTTTCTTTATAGAAGAGACTTCG | 59.454 | 37.037 | 16.73 | 0.00 | 46.11 | 3.79 |
5094 | 7406 | 8.779354 | TGGCTTTTCTTTATAGAAGAGACTTC | 57.221 | 34.615 | 16.73 | 0.00 | 46.11 | 3.01 |
5095 | 7407 | 9.004717 | GTTGGCTTTTCTTTATAGAAGAGACTT | 57.995 | 33.333 | 16.73 | 0.00 | 46.11 | 3.01 |
5096 | 7408 | 8.157476 | TGTTGGCTTTTCTTTATAGAAGAGACT | 58.843 | 33.333 | 16.73 | 0.00 | 46.11 | 3.24 |
5097 | 7409 | 8.324163 | TGTTGGCTTTTCTTTATAGAAGAGAC | 57.676 | 34.615 | 14.92 | 13.05 | 46.13 | 3.36 |
5098 | 7410 | 8.918202 | TTGTTGGCTTTTCTTTATAGAAGAGA | 57.082 | 30.769 | 14.92 | 0.00 | 42.39 | 3.10 |
5099 | 7411 | 8.239998 | CCTTGTTGGCTTTTCTTTATAGAAGAG | 58.760 | 37.037 | 8.53 | 8.53 | 42.58 | 2.85 |
5100 | 7412 | 7.942341 | TCCTTGTTGGCTTTTCTTTATAGAAGA | 59.058 | 33.333 | 0.00 | 0.00 | 37.44 | 2.87 |
5101 | 7413 | 8.110860 | TCCTTGTTGGCTTTTCTTTATAGAAG | 57.889 | 34.615 | 0.00 | 0.00 | 37.44 | 2.85 |
5102 | 7414 | 8.650143 | ATCCTTGTTGGCTTTTCTTTATAGAA | 57.350 | 30.769 | 0.00 | 0.00 | 35.71 | 2.10 |
5103 | 7415 | 9.396022 | CTATCCTTGTTGGCTTTTCTTTATAGA | 57.604 | 33.333 | 0.00 | 0.00 | 35.26 | 1.98 |
5104 | 7416 | 8.131731 | GCTATCCTTGTTGGCTTTTCTTTATAG | 58.868 | 37.037 | 0.00 | 0.00 | 35.26 | 1.31 |
5105 | 7417 | 7.068226 | GGCTATCCTTGTTGGCTTTTCTTTATA | 59.932 | 37.037 | 0.00 | 0.00 | 35.26 | 0.98 |
5106 | 7418 | 6.127338 | GGCTATCCTTGTTGGCTTTTCTTTAT | 60.127 | 38.462 | 0.00 | 0.00 | 35.26 | 1.40 |
5107 | 7419 | 5.185056 | GGCTATCCTTGTTGGCTTTTCTTTA | 59.815 | 40.000 | 0.00 | 0.00 | 35.26 | 1.85 |
5108 | 7420 | 4.021104 | GGCTATCCTTGTTGGCTTTTCTTT | 60.021 | 41.667 | 0.00 | 0.00 | 35.26 | 2.52 |
5109 | 7421 | 3.511540 | GGCTATCCTTGTTGGCTTTTCTT | 59.488 | 43.478 | 0.00 | 0.00 | 35.26 | 2.52 |
5110 | 7422 | 3.092301 | GGCTATCCTTGTTGGCTTTTCT | 58.908 | 45.455 | 0.00 | 0.00 | 35.26 | 2.52 |
5111 | 7423 | 2.166459 | GGGCTATCCTTGTTGGCTTTTC | 59.834 | 50.000 | 0.00 | 0.00 | 35.26 | 2.29 |
5112 | 7424 | 2.179427 | GGGCTATCCTTGTTGGCTTTT | 58.821 | 47.619 | 0.00 | 0.00 | 35.26 | 2.27 |
5113 | 7425 | 1.359130 | AGGGCTATCCTTGTTGGCTTT | 59.641 | 47.619 | 0.00 | 0.00 | 45.47 | 3.51 |
5114 | 7426 | 1.002857 | AGGGCTATCCTTGTTGGCTT | 58.997 | 50.000 | 0.00 | 0.00 | 45.47 | 4.35 |
5115 | 7427 | 2.715295 | AGGGCTATCCTTGTTGGCT | 58.285 | 52.632 | 0.00 | 0.00 | 45.47 | 4.75 |
5123 | 7435 | 4.876630 | AGACCAACCCAAGGGCTATCCT | 62.877 | 54.545 | 4.70 | 0.00 | 44.68 | 3.24 |
5124 | 7436 | 0.106669 | GACCAACCCAAGGGCTATCC | 60.107 | 60.000 | 4.70 | 0.00 | 39.32 | 2.59 |
5125 | 7437 | 0.919710 | AGACCAACCCAAGGGCTATC | 59.080 | 55.000 | 4.70 | 0.00 | 44.68 | 2.08 |
5126 | 7438 | 1.382914 | AAGACCAACCCAAGGGCTAT | 58.617 | 50.000 | 4.70 | 0.00 | 46.21 | 2.97 |
5127 | 7439 | 2.047769 | TAAGACCAACCCAAGGGCTA | 57.952 | 50.000 | 4.70 | 0.00 | 46.21 | 3.93 |
5129 | 7441 | 2.231716 | AATAAGACCAACCCAAGGGC | 57.768 | 50.000 | 4.70 | 0.00 | 39.32 | 5.19 |
5149 | 7461 | 9.054922 | CAATGCAAAAAGAGGGAATTAGAAAAA | 57.945 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5150 | 7462 | 8.428063 | TCAATGCAAAAAGAGGGAATTAGAAAA | 58.572 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
5151 | 7463 | 7.961351 | TCAATGCAAAAAGAGGGAATTAGAAA | 58.039 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
5152 | 7464 | 7.537596 | TCAATGCAAAAAGAGGGAATTAGAA | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5153 | 7465 | 7.722949 | ATCAATGCAAAAAGAGGGAATTAGA | 57.277 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5154 | 7466 | 9.305925 | GTAATCAATGCAAAAAGAGGGAATTAG | 57.694 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
5155 | 7467 | 8.811017 | TGTAATCAATGCAAAAAGAGGGAATTA | 58.189 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5156 | 7468 | 7.678837 | TGTAATCAATGCAAAAAGAGGGAATT | 58.321 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
5157 | 7469 | 7.243604 | TGTAATCAATGCAAAAAGAGGGAAT | 57.756 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5158 | 7470 | 6.662865 | TGTAATCAATGCAAAAAGAGGGAA | 57.337 | 33.333 | 0.00 | 0.00 | 0.00 | 3.97 |
5159 | 7471 | 6.855763 | ATGTAATCAATGCAAAAAGAGGGA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
5160 | 7472 | 8.253113 | AGTTATGTAATCAATGCAAAAAGAGGG | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
5191 | 7503 | 5.596836 | AAGGTGCAAGAAACAAGATTGAA | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
5192 | 7504 | 6.707440 | TTAAGGTGCAAGAAACAAGATTGA | 57.293 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5236 | 7548 | 2.403378 | GCCGTCGCAAATGCCCTAA | 61.403 | 57.895 | 0.00 | 0.00 | 37.91 | 2.69 |
5252 | 7564 | 2.270923 | GAAGGATTTTTGCGGATTGCC | 58.729 | 47.619 | 0.00 | 0.00 | 45.60 | 4.52 |
5263 | 7575 | 1.379527 | GACGGATGCGGAAGGATTTT | 58.620 | 50.000 | 12.44 | 0.00 | 44.47 | 1.82 |
5300 | 7612 | 0.032813 | CAACCTCCTGCATTGGGGAT | 60.033 | 55.000 | 9.18 | 0.00 | 0.00 | 3.85 |
5304 | 7616 | 1.747355 | GATGTCAACCTCCTGCATTGG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
5305 | 7617 | 1.747355 | GGATGTCAACCTCCTGCATTG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
5306 | 7618 | 1.355381 | TGGATGTCAACCTCCTGCATT | 59.645 | 47.619 | 0.33 | 0.00 | 32.67 | 3.56 |
5307 | 7619 | 0.994247 | TGGATGTCAACCTCCTGCAT | 59.006 | 50.000 | 0.33 | 0.00 | 32.67 | 3.96 |
5308 | 7620 | 0.770499 | TTGGATGTCAACCTCCTGCA | 59.230 | 50.000 | 0.33 | 0.00 | 32.67 | 4.41 |
5309 | 7621 | 1.457346 | CTTGGATGTCAACCTCCTGC | 58.543 | 55.000 | 0.33 | 0.00 | 32.67 | 4.85 |
5310 | 7622 | 1.952367 | GCCTTGGATGTCAACCTCCTG | 60.952 | 57.143 | 0.33 | 0.49 | 32.67 | 3.86 |
5311 | 7623 | 0.329596 | GCCTTGGATGTCAACCTCCT | 59.670 | 55.000 | 0.33 | 0.00 | 32.67 | 3.69 |
5366 | 7685 | 7.447374 | TCATCCAGTTTACACGAATTTCATT | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5462 | 7781 | 4.162888 | CCGGTATAGGGTTTAGTTGTTCCT | 59.837 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
5464 | 7783 | 5.111989 | GTCCGGTATAGGGTTTAGTTGTTC | 58.888 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5467 | 7786 | 3.381272 | TCGTCCGGTATAGGGTTTAGTTG | 59.619 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.