Multiple sequence alignment - TraesCS7D01G265000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G265000 chr7D 100.000 3765 0 0 1 3765 246073437 246077201 0.000000e+00 6953.0
1 TraesCS7D01G265000 chr3D 97.885 1040 17 1 2726 3765 565612943 565613977 0.000000e+00 1794.0
2 TraesCS7D01G265000 chr3D 81.435 237 35 9 2111 2341 486050777 486050544 6.420000e-43 185.0
3 TraesCS7D01G265000 chr7B 92.210 1258 37 24 396 1624 222312612 222313837 0.000000e+00 1724.0
4 TraesCS7D01G265000 chr7B 93.844 731 33 2 1910 2634 222313887 222314611 0.000000e+00 1090.0
5 TraesCS7D01G265000 chr7B 92.174 230 13 4 187 411 222311744 222311973 1.690000e-83 320.0
6 TraesCS7D01G265000 chr7A 91.020 1069 41 17 587 1624 262473227 262474271 0.000000e+00 1391.0
7 TraesCS7D01G265000 chr7A 94.884 821 29 6 1902 2719 262474379 262475189 0.000000e+00 1271.0
8 TraesCS7D01G265000 chr7A 87.054 224 27 2 1626 1849 689543614 689543835 6.240000e-63 252.0
9 TraesCS7D01G265000 chr7A 85.463 227 25 7 1626 1849 286993422 286993201 2.930000e-56 230.0
10 TraesCS7D01G265000 chr2D 78.197 821 112 34 2723 3519 605393997 605394774 2.650000e-126 462.0
11 TraesCS7D01G265000 chr2D 83.626 171 28 0 2114 2284 61021904 61022074 1.080000e-35 161.0
12 TraesCS7D01G265000 chr6A 78.916 498 68 20 3269 3750 356089421 356088945 1.700000e-78 303.0
13 TraesCS7D01G265000 chr5B 88.496 226 24 2 1626 1850 592748731 592748507 4.790000e-69 272.0
14 TraesCS7D01G265000 chr5B 86.550 171 23 0 2114 2284 497504692 497504862 4.960000e-44 189.0
15 TraesCS7D01G265000 chr2B 88.444 225 24 2 1626 1849 755034514 755034737 1.720000e-68 270.0
16 TraesCS7D01G265000 chr2B 87.446 231 25 4 1626 1855 755063240 755063013 2.880000e-66 263.0
17 TraesCS7D01G265000 chr2B 83.843 229 33 4 1626 1852 649757473 649757247 8.190000e-52 215.0
18 TraesCS7D01G265000 chr1D 87.556 225 25 3 1626 1849 452489822 452489600 1.340000e-64 257.0
19 TraesCS7D01G265000 chr1B 87.111 225 25 4 1627 1849 334657531 334657309 6.240000e-63 252.0
20 TraesCS7D01G265000 chr1B 78.365 208 42 2 2418 2623 462794305 462794511 8.490000e-27 132.0
21 TraesCS7D01G265000 chr5D 85.981 214 26 4 1638 1849 359528432 359528221 3.780000e-55 226.0
22 TraesCS7D01G265000 chr5D 86.550 171 23 0 2114 2284 412960787 412960957 4.960000e-44 189.0
23 TraesCS7D01G265000 chr4A 81.139 281 38 7 3251 3524 216013370 216013642 1.060000e-50 211.0
24 TraesCS7D01G265000 chr2A 79.154 331 48 9 3206 3524 501127280 501126959 3.810000e-50 209.0
25 TraesCS7D01G265000 chr2A 84.211 171 27 0 2114 2284 61488449 61488619 2.330000e-37 167.0
26 TraesCS7D01G265000 chr1A 85.938 192 24 2 2750 2940 537343285 537343474 6.380000e-48 202.0
27 TraesCS7D01G265000 chr5A 87.135 171 22 0 2114 2284 525026121 525026291 1.070000e-45 195.0
28 TraesCS7D01G265000 chr3A 85.143 175 24 2 2111 2284 629228104 629227931 1.070000e-40 178.0
29 TraesCS7D01G265000 chr3A 92.500 40 3 0 2820 2859 11029145 11029184 1.460000e-04 58.4
30 TraesCS7D01G265000 chr3A 92.500 40 3 0 2820 2859 11123416 11123455 1.460000e-04 58.4
31 TraesCS7D01G265000 chr4D 84.153 183 13 5 439 620 74095738 74095905 3.010000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G265000 chr7D 246073437 246077201 3764 False 6953.000000 6953 100.000000 1 3765 1 chr7D.!!$F1 3764
1 TraesCS7D01G265000 chr3D 565612943 565613977 1034 False 1794.000000 1794 97.885000 2726 3765 1 chr3D.!!$F1 1039
2 TraesCS7D01G265000 chr7B 222311744 222314611 2867 False 1044.666667 1724 92.742667 187 2634 3 chr7B.!!$F1 2447
3 TraesCS7D01G265000 chr7A 262473227 262475189 1962 False 1331.000000 1391 92.952000 587 2719 2 chr7A.!!$F2 2132
4 TraesCS7D01G265000 chr2D 605393997 605394774 777 False 462.000000 462 78.197000 2723 3519 1 chr2D.!!$F2 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 1140 0.529119 GTGTCACGGGGCTATTACGG 60.529 60.0 0.00 0.0 0.00 4.02 F
1340 2044 0.248661 CGCGATCCGTGTGAGATTCT 60.249 55.0 0.00 0.0 32.40 2.40 F
1847 2560 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.0 13.13 0.0 34.45 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2541 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.0 0.00 0.0 37.07 2.01 R
2574 3293 0.108186 GCCATATCCGCGATCATCCA 60.108 55.0 8.23 0.0 0.00 3.41 R
2963 3682 0.381089 CCGAGTAGATGGTCGTGGTC 59.619 60.0 0.00 0.0 34.27 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.754570 GCAATTGCACAGTGCCAA 57.245 50.000 25.36 16.36 44.23 4.52
39 40 2.228115 GCAATTGCACAGTGCCAAC 58.772 52.632 25.36 4.35 44.23 3.77
40 41 1.550659 GCAATTGCACAGTGCCAACG 61.551 55.000 25.36 10.08 44.23 4.10
41 42 0.940519 CAATTGCACAGTGCCAACGG 60.941 55.000 23.06 5.09 44.23 4.44
42 43 1.106351 AATTGCACAGTGCCAACGGA 61.106 50.000 23.06 0.00 44.23 4.69
43 44 0.895100 ATTGCACAGTGCCAACGGAT 60.895 50.000 23.06 4.69 44.23 4.18
44 45 1.794151 TTGCACAGTGCCAACGGATG 61.794 55.000 23.06 0.00 44.23 3.51
45 46 2.260869 GCACAGTGCCAACGGATGT 61.261 57.895 15.27 0.00 37.42 3.06
46 47 1.575922 CACAGTGCCAACGGATGTG 59.424 57.895 0.00 0.00 35.75 3.21
47 48 2.260869 ACAGTGCCAACGGATGTGC 61.261 57.895 0.00 0.00 0.00 4.57
48 49 2.112928 AGTGCCAACGGATGTGCA 59.887 55.556 0.00 0.00 34.27 4.57
49 50 1.528076 AGTGCCAACGGATGTGCAA 60.528 52.632 0.00 0.00 37.10 4.08
50 51 1.371635 GTGCCAACGGATGTGCAAC 60.372 57.895 0.00 0.00 37.10 4.17
51 52 1.528076 TGCCAACGGATGTGCAACT 60.528 52.632 0.00 0.00 38.04 3.16
52 53 1.081242 GCCAACGGATGTGCAACTG 60.081 57.895 0.00 0.00 38.04 3.16
53 54 1.081242 CCAACGGATGTGCAACTGC 60.081 57.895 0.00 0.00 38.04 4.40
74 75 4.761235 CAGAGCTGCATGAAAAGAAAGA 57.239 40.909 1.02 0.00 0.00 2.52
75 76 5.312120 CAGAGCTGCATGAAAAGAAAGAT 57.688 39.130 1.02 0.00 0.00 2.40
76 77 6.432607 CAGAGCTGCATGAAAAGAAAGATA 57.567 37.500 1.02 0.00 0.00 1.98
77 78 6.849502 CAGAGCTGCATGAAAAGAAAGATAA 58.150 36.000 1.02 0.00 0.00 1.75
78 79 7.310664 CAGAGCTGCATGAAAAGAAAGATAAA 58.689 34.615 1.02 0.00 0.00 1.40
79 80 7.811236 CAGAGCTGCATGAAAAGAAAGATAAAA 59.189 33.333 1.02 0.00 0.00 1.52
80 81 8.529476 AGAGCTGCATGAAAAGAAAGATAAAAT 58.471 29.630 1.02 0.00 0.00 1.82
81 82 9.793252 GAGCTGCATGAAAAGAAAGATAAAATA 57.207 29.630 1.02 0.00 0.00 1.40
130 131 6.956047 ACACGTAGAAAAGAAAGCTAAAAGG 58.044 36.000 0.00 0.00 0.00 3.11
131 132 5.851703 CACGTAGAAAAGAAAGCTAAAAGGC 59.148 40.000 0.00 0.00 0.00 4.35
132 133 5.529800 ACGTAGAAAAGAAAGCTAAAAGGCA 59.470 36.000 0.00 0.00 34.17 4.75
133 134 6.038936 ACGTAGAAAAGAAAGCTAAAAGGCAA 59.961 34.615 0.00 0.00 34.17 4.52
134 135 6.915843 CGTAGAAAAGAAAGCTAAAAGGCAAA 59.084 34.615 0.00 0.00 34.17 3.68
135 136 7.434013 CGTAGAAAAGAAAGCTAAAAGGCAAAA 59.566 33.333 0.00 0.00 34.17 2.44
136 137 9.261180 GTAGAAAAGAAAGCTAAAAGGCAAAAT 57.739 29.630 0.00 0.00 34.17 1.82
137 138 8.370493 AGAAAAGAAAGCTAAAAGGCAAAATC 57.630 30.769 0.00 0.00 34.17 2.17
138 139 8.206867 AGAAAAGAAAGCTAAAAGGCAAAATCT 58.793 29.630 0.00 0.00 34.17 2.40
139 140 9.476202 GAAAAGAAAGCTAAAAGGCAAAATCTA 57.524 29.630 0.00 0.00 34.17 1.98
140 141 8.818141 AAAGAAAGCTAAAAGGCAAAATCTAC 57.182 30.769 0.00 0.00 34.17 2.59
141 142 7.767250 AGAAAGCTAAAAGGCAAAATCTACT 57.233 32.000 0.00 0.00 34.17 2.57
142 143 8.863872 AGAAAGCTAAAAGGCAAAATCTACTA 57.136 30.769 0.00 0.00 34.17 1.82
143 144 8.951243 AGAAAGCTAAAAGGCAAAATCTACTAG 58.049 33.333 0.00 0.00 34.17 2.57
144 145 7.631717 AAGCTAAAAGGCAAAATCTACTAGG 57.368 36.000 0.00 0.00 34.17 3.02
145 146 5.590663 AGCTAAAAGGCAAAATCTACTAGGC 59.409 40.000 0.00 0.00 34.17 3.93
146 147 4.965119 AAAAGGCAAAATCTACTAGGCG 57.035 40.909 0.00 0.00 0.00 5.52
147 148 3.629142 AAGGCAAAATCTACTAGGCGT 57.371 42.857 0.00 0.00 0.00 5.68
148 149 4.748277 AAGGCAAAATCTACTAGGCGTA 57.252 40.909 0.00 0.00 0.00 4.42
149 150 4.056092 AGGCAAAATCTACTAGGCGTAC 57.944 45.455 0.00 0.00 0.00 3.67
150 151 2.793232 GGCAAAATCTACTAGGCGTACG 59.207 50.000 11.84 11.84 0.00 3.67
151 152 3.489738 GGCAAAATCTACTAGGCGTACGA 60.490 47.826 21.65 0.00 0.00 3.43
152 153 4.296690 GCAAAATCTACTAGGCGTACGAT 58.703 43.478 21.65 9.17 0.00 3.73
153 154 4.743644 GCAAAATCTACTAGGCGTACGATT 59.256 41.667 21.65 8.37 32.38 3.34
154 155 5.332355 GCAAAATCTACTAGGCGTACGATTG 60.332 44.000 21.65 9.97 31.91 2.67
155 156 5.762825 AAATCTACTAGGCGTACGATTGA 57.237 39.130 21.65 6.71 31.91 2.57
156 157 4.745837 ATCTACTAGGCGTACGATTGAC 57.254 45.455 21.65 0.00 0.00 3.18
158 159 1.372582 ACTAGGCGTACGATTGACGA 58.627 50.000 21.65 0.00 45.77 4.20
159 160 1.945394 ACTAGGCGTACGATTGACGAT 59.055 47.619 21.65 0.00 45.77 3.73
160 161 2.357009 ACTAGGCGTACGATTGACGATT 59.643 45.455 21.65 0.00 45.77 3.34
161 162 3.561310 ACTAGGCGTACGATTGACGATTA 59.439 43.478 21.65 0.00 45.77 1.75
162 163 3.637998 AGGCGTACGATTGACGATTAT 57.362 42.857 21.65 0.00 45.77 1.28
163 164 3.562505 AGGCGTACGATTGACGATTATC 58.437 45.455 21.65 0.00 45.77 1.75
164 165 3.004002 AGGCGTACGATTGACGATTATCA 59.996 43.478 21.65 0.00 45.77 2.15
165 166 3.918591 GGCGTACGATTGACGATTATCAT 59.081 43.478 21.65 0.00 45.77 2.45
166 167 4.384846 GGCGTACGATTGACGATTATCATT 59.615 41.667 21.65 0.00 45.77 2.57
167 168 5.570206 GGCGTACGATTGACGATTATCATTA 59.430 40.000 21.65 0.00 45.77 1.90
168 169 6.237227 GGCGTACGATTGACGATTATCATTAG 60.237 42.308 21.65 0.00 45.77 1.73
169 170 6.304922 GCGTACGATTGACGATTATCATTAGT 59.695 38.462 21.65 0.00 45.77 2.24
170 171 7.149015 GCGTACGATTGACGATTATCATTAGTT 60.149 37.037 21.65 0.00 45.77 2.24
171 172 9.321590 CGTACGATTGACGATTATCATTAGTTA 57.678 33.333 10.44 0.00 45.77 2.24
174 175 9.613957 ACGATTGACGATTATCATTAGTTAGAG 57.386 33.333 0.00 0.00 45.77 2.43
175 176 8.579600 CGATTGACGATTATCATTAGTTAGAGC 58.420 37.037 0.00 0.00 45.77 4.09
176 177 9.411801 GATTGACGATTATCATTAGTTAGAGCA 57.588 33.333 0.00 0.00 0.00 4.26
177 178 9.764363 ATTGACGATTATCATTAGTTAGAGCAA 57.236 29.630 0.00 0.00 0.00 3.91
178 179 9.764363 TTGACGATTATCATTAGTTAGAGCAAT 57.236 29.630 0.00 0.00 0.00 3.56
179 180 9.196552 TGACGATTATCATTAGTTAGAGCAATG 57.803 33.333 0.00 0.00 0.00 2.82
180 181 8.023050 ACGATTATCATTAGTTAGAGCAATGC 57.977 34.615 0.00 0.00 31.21 3.56
181 182 7.875041 ACGATTATCATTAGTTAGAGCAATGCT 59.125 33.333 7.79 7.79 43.88 3.79
182 183 9.358872 CGATTATCATTAGTTAGAGCAATGCTA 57.641 33.333 8.12 0.00 39.88 3.49
185 186 7.721286 ATCATTAGTTAGAGCAATGCTACAC 57.279 36.000 8.12 5.24 39.88 2.90
211 212 5.828299 TGAATGGATTTTTACGGGATCAC 57.172 39.130 0.00 0.00 0.00 3.06
238 239 2.026356 TGGCTTAGCTGGCATGTTTCTA 60.026 45.455 3.59 0.00 37.59 2.10
239 240 3.016736 GGCTTAGCTGGCATGTTTCTAA 58.983 45.455 3.59 0.00 0.00 2.10
278 283 5.181748 CACTCTCACTAAAATTCAGAGGGG 58.818 45.833 0.00 0.00 35.81 4.79
313 319 4.958581 AGGAAAAGGCCCATAAAATCTCTG 59.041 41.667 0.00 0.00 0.00 3.35
323 329 5.067805 CCCATAAAATCTCTGTAAACAGCCC 59.932 44.000 5.21 0.00 43.46 5.19
330 336 1.687660 TCTGTAAACAGCCCGTGTGTA 59.312 47.619 5.21 0.00 43.46 2.90
359 365 8.496707 AATTTTCTATCCAATCAAAACATGCC 57.503 30.769 0.00 0.00 0.00 4.40
364 370 2.231964 TCCAATCAAAACATGCCTGCTC 59.768 45.455 0.00 0.00 0.00 4.26
419 1079 1.650912 GGGTAGCATTGCTCGCATG 59.349 57.895 15.81 0.00 40.44 4.06
475 1135 4.157120 GGCGTGTCACGGGGCTAT 62.157 66.667 25.70 0.00 42.82 2.97
476 1136 2.125269 GCGTGTCACGGGGCTATT 60.125 61.111 25.70 0.00 42.82 1.73
477 1137 1.142314 GCGTGTCACGGGGCTATTA 59.858 57.895 25.70 0.00 42.82 0.98
478 1138 1.149964 GCGTGTCACGGGGCTATTAC 61.150 60.000 25.70 2.97 42.82 1.89
479 1139 0.868602 CGTGTCACGGGGCTATTACG 60.869 60.000 17.75 0.00 38.08 3.18
480 1140 0.529119 GTGTCACGGGGCTATTACGG 60.529 60.000 0.00 0.00 0.00 4.02
481 1141 1.068585 GTCACGGGGCTATTACGGG 59.931 63.158 0.00 0.00 0.00 5.28
522 1182 1.369091 CCGGCTCCTGAATTTCACCG 61.369 60.000 15.54 15.54 33.67 4.94
553 1213 2.585432 CCCTTTTCTCCCCCTAATCCAA 59.415 50.000 0.00 0.00 0.00 3.53
758 1428 2.823154 CCTTATCTCCGCTAGCTAGCTT 59.177 50.000 36.02 20.54 46.85 3.74
761 1431 1.167155 TCTCCGCTAGCTAGCTTCGG 61.167 60.000 36.02 34.09 46.85 4.30
795 1465 3.308473 GGTCTTTACTCTCCAGGCCAAAT 60.308 47.826 5.01 0.00 32.06 2.32
796 1466 3.942115 GTCTTTACTCTCCAGGCCAAATC 59.058 47.826 5.01 0.00 0.00 2.17
797 1467 3.587061 TCTTTACTCTCCAGGCCAAATCA 59.413 43.478 5.01 0.00 0.00 2.57
799 1469 2.978156 ACTCTCCAGGCCAAATCAAA 57.022 45.000 5.01 0.00 0.00 2.69
800 1470 3.243359 ACTCTCCAGGCCAAATCAAAA 57.757 42.857 5.01 0.00 0.00 2.44
801 1471 2.893489 ACTCTCCAGGCCAAATCAAAAC 59.107 45.455 5.01 0.00 0.00 2.43
802 1472 2.232208 CTCTCCAGGCCAAATCAAAACC 59.768 50.000 5.01 0.00 0.00 3.27
803 1473 1.969923 CTCCAGGCCAAATCAAAACCA 59.030 47.619 5.01 0.00 0.00 3.67
804 1474 1.691434 TCCAGGCCAAATCAAAACCAC 59.309 47.619 5.01 0.00 0.00 4.16
1242 1944 1.400113 CGTTGCTCGATTTGTGCATGT 60.400 47.619 1.67 0.00 45.64 3.21
1260 1962 0.453390 GTTGCAGCTTCCATACAGCC 59.547 55.000 0.00 0.00 38.09 4.85
1340 2044 0.248661 CGCGATCCGTGTGAGATTCT 60.249 55.000 0.00 0.00 32.40 2.40
1343 2047 2.223502 GCGATCCGTGTGAGATTCTGTA 60.224 50.000 0.00 0.00 0.00 2.74
1387 2091 3.561725 AGACGAACAGGAAAGCAGAAAAG 59.438 43.478 0.00 0.00 0.00 2.27
1388 2092 2.618709 ACGAACAGGAAAGCAGAAAAGG 59.381 45.455 0.00 0.00 0.00 3.11
1389 2093 2.030805 CGAACAGGAAAGCAGAAAAGGG 60.031 50.000 0.00 0.00 0.00 3.95
1391 2095 3.532641 ACAGGAAAGCAGAAAAGGGAT 57.467 42.857 0.00 0.00 0.00 3.85
1393 2097 4.998051 ACAGGAAAGCAGAAAAGGGATAA 58.002 39.130 0.00 0.00 0.00 1.75
1394 2098 5.393866 ACAGGAAAGCAGAAAAGGGATAAA 58.606 37.500 0.00 0.00 0.00 1.40
1395 2099 5.838521 ACAGGAAAGCAGAAAAGGGATAAAA 59.161 36.000 0.00 0.00 0.00 1.52
1397 2101 7.016563 ACAGGAAAGCAGAAAAGGGATAAAAAT 59.983 33.333 0.00 0.00 0.00 1.82
1398 2102 7.879677 CAGGAAAGCAGAAAAGGGATAAAAATT 59.120 33.333 0.00 0.00 0.00 1.82
1399 2103 7.879677 AGGAAAGCAGAAAAGGGATAAAAATTG 59.120 33.333 0.00 0.00 0.00 2.32
1401 2105 5.170748 AGCAGAAAAGGGATAAAAATTGCG 58.829 37.500 0.00 0.00 33.39 4.85
1402 2106 5.047377 AGCAGAAAAGGGATAAAAATTGCGA 60.047 36.000 0.00 0.00 33.39 5.10
1403 2107 5.289434 GCAGAAAAGGGATAAAAATTGCGAG 59.711 40.000 0.00 0.00 0.00 5.03
1404 2108 6.620678 CAGAAAAGGGATAAAAATTGCGAGA 58.379 36.000 0.00 0.00 0.00 4.04
1405 2109 7.260603 CAGAAAAGGGATAAAAATTGCGAGAT 58.739 34.615 0.00 0.00 0.00 2.75
1460 2164 1.201825 GCACGTGTCGAGCTTTGTC 59.798 57.895 18.38 0.00 40.03 3.18
1579 2290 5.738909 CAGTCTTACAATCATCCTCCAACT 58.261 41.667 0.00 0.00 0.00 3.16
1589 2302 3.069443 TCATCCTCCAACTTGGCAAAAAC 59.931 43.478 0.00 0.00 37.47 2.43
1592 2305 2.935849 CCTCCAACTTGGCAAAAACAAC 59.064 45.455 0.00 0.00 37.47 3.32
1599 2312 6.402011 CCAACTTGGCAAAAACAACAAACTAG 60.402 38.462 0.00 0.00 0.00 2.57
1602 2315 4.180057 TGGCAAAAACAACAAACTAGCTG 58.820 39.130 0.00 0.00 0.00 4.24
1620 2333 2.030213 GCTGATGCTTCGTCATCTCAAC 59.970 50.000 13.18 0.00 42.44 3.18
1624 2337 5.664457 TGATGCTTCGTCATCTCAACTATT 58.336 37.500 13.18 0.00 42.44 1.73
1625 2338 5.521372 TGATGCTTCGTCATCTCAACTATTG 59.479 40.000 13.18 0.00 42.44 1.90
1627 2340 5.237815 TGCTTCGTCATCTCAACTATTGTT 58.762 37.500 0.00 0.00 36.75 2.83
1628 2341 5.700832 TGCTTCGTCATCTCAACTATTGTTT 59.299 36.000 0.00 0.00 33.52 2.83
1629 2342 6.871492 TGCTTCGTCATCTCAACTATTGTTTA 59.129 34.615 0.00 0.00 33.52 2.01
1630 2343 7.549134 TGCTTCGTCATCTCAACTATTGTTTAT 59.451 33.333 0.00 0.00 33.52 1.40
1631 2344 8.058915 GCTTCGTCATCTCAACTATTGTTTATC 58.941 37.037 0.00 0.00 33.52 1.75
1634 2347 9.087424 TCGTCATCTCAACTATTGTTTATCAAG 57.913 33.333 0.00 0.00 39.55 3.02
1635 2348 7.848051 CGTCATCTCAACTATTGTTTATCAAGC 59.152 37.037 0.00 0.00 39.55 4.01
1636 2349 8.125448 GTCATCTCAACTATTGTTTATCAAGCC 58.875 37.037 0.00 0.00 39.55 4.35
1637 2350 7.283127 TCATCTCAACTATTGTTTATCAAGCCC 59.717 37.037 0.00 0.00 39.55 5.19
1638 2351 5.885912 TCTCAACTATTGTTTATCAAGCCCC 59.114 40.000 0.00 0.00 39.55 5.80
1641 2354 4.793201 ACTATTGTTTATCAAGCCCCCTC 58.207 43.478 0.00 0.00 39.55 4.30
1642 2355 4.478686 ACTATTGTTTATCAAGCCCCCTCT 59.521 41.667 0.00 0.00 39.55 3.69
1643 2356 3.825908 TTGTTTATCAAGCCCCCTCTT 57.174 42.857 0.00 0.00 0.00 2.85
1647 2360 5.837829 TGTTTATCAAGCCCCCTCTTATTT 58.162 37.500 0.00 0.00 0.00 1.40
1648 2361 6.260663 TGTTTATCAAGCCCCCTCTTATTTT 58.739 36.000 0.00 0.00 0.00 1.82
1649 2362 6.154363 TGTTTATCAAGCCCCCTCTTATTTTG 59.846 38.462 0.00 0.00 0.00 2.44
1650 2363 3.100207 TCAAGCCCCCTCTTATTTTGG 57.900 47.619 0.00 0.00 0.00 3.28
1651 2364 2.110578 CAAGCCCCCTCTTATTTTGGG 58.889 52.381 0.00 0.00 40.59 4.12
1656 2369 3.989056 CCCCCTCTTATTTTGGGCTAAA 58.011 45.455 0.00 0.00 39.61 1.85
1657 2370 4.358214 CCCCCTCTTATTTTGGGCTAAAA 58.642 43.478 11.28 11.28 42.10 1.52
1659 2372 5.428457 CCCCCTCTTATTTTGGGCTAAAATT 59.572 40.000 23.72 10.47 44.49 1.82
1661 2374 6.823182 CCCCTCTTATTTTGGGCTAAAATTTG 59.177 38.462 23.72 16.86 44.49 2.32
1662 2375 7.310983 CCCCTCTTATTTTGGGCTAAAATTTGA 60.311 37.037 23.72 19.36 44.49 2.69
1663 2376 7.549134 CCCTCTTATTTTGGGCTAAAATTTGAC 59.451 37.037 23.72 0.00 44.49 3.18
1664 2377 7.549134 CCTCTTATTTTGGGCTAAAATTTGACC 59.451 37.037 23.72 0.00 44.49 4.02
1665 2378 7.967908 TCTTATTTTGGGCTAAAATTTGACCA 58.032 30.769 23.72 5.07 44.49 4.02
1666 2379 8.432805 TCTTATTTTGGGCTAAAATTTGACCAA 58.567 29.630 23.72 10.97 46.83 3.67
1669 2382 5.359194 TTGGGCTAAAATTTGACCAACAA 57.641 34.783 10.97 2.09 44.33 2.83
1670 2383 5.745227 TTGGGCTAAAATTTGACCAACAAA 58.255 33.333 10.97 0.00 44.33 2.83
1707 2420 9.612066 AAAATGTAAACCAGATGTCACAAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
1708 2421 9.612066 AAATGTAAACCAGATGTCACAAAAATT 57.388 25.926 0.00 0.00 0.00 1.82
1716 2429 9.912634 ACCAGATGTCACAAAAATTATACTTTG 57.087 29.630 0.00 0.00 38.29 2.77
1717 2430 9.357652 CCAGATGTCACAAAAATTATACTTTGG 57.642 33.333 5.56 0.00 36.94 3.28
1718 2431 8.863049 CAGATGTCACAAAAATTATACTTTGGC 58.137 33.333 5.56 0.00 36.94 4.52
1719 2432 8.034804 AGATGTCACAAAAATTATACTTTGGCC 58.965 33.333 0.00 0.00 36.94 5.36
1720 2433 7.055667 TGTCACAAAAATTATACTTTGGCCA 57.944 32.000 0.00 0.00 36.94 5.36
1721 2434 7.500992 TGTCACAAAAATTATACTTTGGCCAA 58.499 30.769 16.05 16.05 36.94 4.52
1722 2435 7.655328 TGTCACAAAAATTATACTTTGGCCAAG 59.345 33.333 19.48 15.02 36.94 3.61
1723 2436 6.648725 TCACAAAAATTATACTTTGGCCAAGC 59.351 34.615 19.48 0.00 36.94 4.01
1724 2437 6.650390 CACAAAAATTATACTTTGGCCAAGCT 59.350 34.615 19.48 10.16 36.94 3.74
1725 2438 6.873605 ACAAAAATTATACTTTGGCCAAGCTC 59.126 34.615 19.48 0.00 36.94 4.09
1726 2439 6.857437 AAAATTATACTTTGGCCAAGCTCT 57.143 33.333 19.48 8.01 35.65 4.09
1727 2440 6.857437 AAATTATACTTTGGCCAAGCTCTT 57.143 33.333 19.48 6.75 35.65 2.85
1728 2441 6.857437 AATTATACTTTGGCCAAGCTCTTT 57.143 33.333 19.48 5.42 35.65 2.52
1729 2442 5.897377 TTATACTTTGGCCAAGCTCTTTC 57.103 39.130 19.48 0.00 35.65 2.62
1730 2443 2.071778 ACTTTGGCCAAGCTCTTTCA 57.928 45.000 19.48 0.00 35.65 2.69
1731 2444 2.387757 ACTTTGGCCAAGCTCTTTCAA 58.612 42.857 19.48 0.00 35.65 2.69
1732 2445 2.765699 ACTTTGGCCAAGCTCTTTCAAA 59.234 40.909 19.48 0.00 35.65 2.69
1733 2446 3.389002 ACTTTGGCCAAGCTCTTTCAAAT 59.611 39.130 19.48 0.00 35.65 2.32
1734 2447 4.588528 ACTTTGGCCAAGCTCTTTCAAATA 59.411 37.500 19.48 0.00 35.65 1.40
1735 2448 4.519540 TTGGCCAAGCTCTTTCAAATAC 57.480 40.909 16.05 0.00 0.00 1.89
1736 2449 3.495331 TGGCCAAGCTCTTTCAAATACA 58.505 40.909 0.61 0.00 0.00 2.29
1737 2450 3.894427 TGGCCAAGCTCTTTCAAATACAA 59.106 39.130 0.61 0.00 0.00 2.41
1738 2451 4.343526 TGGCCAAGCTCTTTCAAATACAAA 59.656 37.500 0.61 0.00 0.00 2.83
1739 2452 5.011943 TGGCCAAGCTCTTTCAAATACAAAT 59.988 36.000 0.61 0.00 0.00 2.32
1740 2453 5.578336 GGCCAAGCTCTTTCAAATACAAATC 59.422 40.000 0.00 0.00 0.00 2.17
1741 2454 5.578336 GCCAAGCTCTTTCAAATACAAATCC 59.422 40.000 0.00 0.00 0.00 3.01
1742 2455 6.101997 CCAAGCTCTTTCAAATACAAATCCC 58.898 40.000 0.00 0.00 0.00 3.85
1743 2456 6.295236 CCAAGCTCTTTCAAATACAAATCCCA 60.295 38.462 0.00 0.00 0.00 4.37
1744 2457 6.521151 AGCTCTTTCAAATACAAATCCCAG 57.479 37.500 0.00 0.00 0.00 4.45
1745 2458 6.248433 AGCTCTTTCAAATACAAATCCCAGA 58.752 36.000 0.00 0.00 0.00 3.86
1746 2459 6.376581 AGCTCTTTCAAATACAAATCCCAGAG 59.623 38.462 0.00 0.00 0.00 3.35
1747 2460 6.151817 GCTCTTTCAAATACAAATCCCAGAGT 59.848 38.462 0.00 0.00 0.00 3.24
1748 2461 7.452880 TCTTTCAAATACAAATCCCAGAGTG 57.547 36.000 0.00 0.00 0.00 3.51
1749 2462 7.004086 TCTTTCAAATACAAATCCCAGAGTGT 58.996 34.615 0.00 0.00 0.00 3.55
1750 2463 8.160765 TCTTTCAAATACAAATCCCAGAGTGTA 58.839 33.333 0.00 0.00 0.00 2.90
1751 2464 7.681939 TTCAAATACAAATCCCAGAGTGTAC 57.318 36.000 0.00 0.00 29.71 2.90
1752 2465 7.016153 TCAAATACAAATCCCAGAGTGTACT 57.984 36.000 0.00 0.00 29.71 2.73
1753 2466 7.458397 TCAAATACAAATCCCAGAGTGTACTT 58.542 34.615 0.00 0.00 29.71 2.24
1754 2467 7.942341 TCAAATACAAATCCCAGAGTGTACTTT 59.058 33.333 0.00 0.00 29.71 2.66
1755 2468 8.576442 CAAATACAAATCCCAGAGTGTACTTTT 58.424 33.333 0.00 0.00 29.71 2.27
1756 2469 8.706322 AATACAAATCCCAGAGTGTACTTTTT 57.294 30.769 0.00 0.00 29.71 1.94
1757 2470 6.391227 ACAAATCCCAGAGTGTACTTTTTG 57.609 37.500 0.00 0.00 0.00 2.44
1758 2471 5.891551 ACAAATCCCAGAGTGTACTTTTTGT 59.108 36.000 0.00 0.00 31.86 2.83
1759 2472 7.057894 ACAAATCCCAGAGTGTACTTTTTGTA 58.942 34.615 0.00 0.00 34.17 2.41
1760 2473 7.228706 ACAAATCCCAGAGTGTACTTTTTGTAG 59.771 37.037 0.00 0.00 34.17 2.74
1761 2474 4.638304 TCCCAGAGTGTACTTTTTGTAGC 58.362 43.478 0.00 0.00 0.00 3.58
1763 2476 5.003804 CCCAGAGTGTACTTTTTGTAGCAT 58.996 41.667 0.00 0.00 0.00 3.79
1766 2479 7.985184 CCCAGAGTGTACTTTTTGTAGCATATA 59.015 37.037 0.00 0.00 0.00 0.86
1799 2512 9.784531 TTTTTATTAGCCAAATGAATGGTCAAA 57.215 25.926 0.00 0.00 42.75 2.69
1800 2513 9.434420 TTTTATTAGCCAAATGAATGGTCAAAG 57.566 29.630 0.00 0.00 42.75 2.77
1801 2514 6.610075 ATTAGCCAAATGAATGGTCAAAGT 57.390 33.333 0.00 0.00 42.75 2.66
1802 2515 4.961438 AGCCAAATGAATGGTCAAAGTT 57.039 36.364 0.00 0.00 42.75 2.66
1803 2516 5.294734 AGCCAAATGAATGGTCAAAGTTT 57.705 34.783 0.00 0.00 42.75 2.66
1804 2517 5.058490 AGCCAAATGAATGGTCAAAGTTTG 58.942 37.500 9.44 9.44 42.75 2.93
1806 2519 5.050159 GCCAAATGAATGGTCAAAGTTTGTC 60.050 40.000 15.08 9.69 42.75 3.18
1807 2520 6.282930 CCAAATGAATGGTCAAAGTTTGTCT 58.717 36.000 15.08 0.00 37.30 3.41
1808 2521 6.762661 CCAAATGAATGGTCAAAGTTTGTCTT 59.237 34.615 15.08 1.80 37.30 3.01
1809 2522 7.925483 CCAAATGAATGGTCAAAGTTTGTCTTA 59.075 33.333 15.08 4.56 37.30 2.10
1810 2523 9.311916 CAAATGAATGGTCAAAGTTTGTCTTAA 57.688 29.630 15.08 1.63 37.30 1.85
1811 2524 9.883142 AAATGAATGGTCAAAGTTTGTCTTAAA 57.117 25.926 15.08 0.00 37.30 1.52
1812 2525 9.883142 AATGAATGGTCAAAGTTTGTCTTAAAA 57.117 25.926 15.08 0.00 37.30 1.52
1824 2537 8.507524 AGTTTGTCTTAAAATACTAGATGGCC 57.492 34.615 0.00 0.00 0.00 5.36
1825 2538 8.329502 AGTTTGTCTTAAAATACTAGATGGCCT 58.670 33.333 3.32 0.00 0.00 5.19
1826 2539 8.398665 GTTTGTCTTAAAATACTAGATGGCCTG 58.601 37.037 3.32 0.00 0.00 4.85
1827 2540 7.432148 TGTCTTAAAATACTAGATGGCCTGA 57.568 36.000 3.32 0.00 0.00 3.86
1828 2541 8.034313 TGTCTTAAAATACTAGATGGCCTGAT 57.966 34.615 3.32 0.00 0.00 2.90
1829 2542 9.154632 TGTCTTAAAATACTAGATGGCCTGATA 57.845 33.333 3.32 0.00 0.00 2.15
1830 2543 9.998106 GTCTTAAAATACTAGATGGCCTGATAA 57.002 33.333 3.32 0.00 0.00 1.75
1833 2546 9.569122 TTAAAATACTAGATGGCCTGATAAACC 57.431 33.333 3.32 0.00 0.00 3.27
1834 2547 5.763876 ATACTAGATGGCCTGATAAACCC 57.236 43.478 3.32 0.00 0.00 4.11
1835 2548 2.368875 ACTAGATGGCCTGATAAACCCG 59.631 50.000 3.32 0.00 0.00 5.28
1836 2549 0.474184 AGATGGCCTGATAAACCCGG 59.526 55.000 3.32 0.00 0.00 5.73
1837 2550 0.472471 GATGGCCTGATAAACCCGGA 59.528 55.000 0.73 0.00 0.00 5.14
1838 2551 0.182775 ATGGCCTGATAAACCCGGAC 59.817 55.000 0.73 0.00 0.00 4.79
1839 2552 1.523032 GGCCTGATAAACCCGGACG 60.523 63.158 0.73 0.00 0.00 4.79
1840 2553 1.523032 GCCTGATAAACCCGGACGG 60.523 63.158 0.73 3.25 37.81 4.79
1841 2554 1.963464 GCCTGATAAACCCGGACGGA 61.963 60.000 13.13 0.00 37.50 4.69
1842 2555 0.104304 CCTGATAAACCCGGACGGAG 59.896 60.000 13.13 5.04 37.50 4.63
1843 2556 0.104304 CTGATAAACCCGGACGGAGG 59.896 60.000 13.13 0.00 37.50 4.30
1844 2557 0.615544 TGATAAACCCGGACGGAGGT 60.616 55.000 13.13 0.00 38.27 3.85
1845 2558 1.341877 TGATAAACCCGGACGGAGGTA 60.342 52.381 13.13 1.24 34.45 3.08
1846 2559 1.339291 GATAAACCCGGACGGAGGTAG 59.661 57.143 13.13 0.00 34.45 3.18
1847 2560 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
1848 2561 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
1849 2562 0.259938 AACCCGGACGGAGGTAGTAT 59.740 55.000 13.13 0.00 34.45 2.12
1850 2563 1.140312 ACCCGGACGGAGGTAGTATA 58.860 55.000 13.13 0.00 37.50 1.47
1851 2564 1.707427 ACCCGGACGGAGGTAGTATAT 59.293 52.381 13.13 0.00 37.50 0.86
1852 2565 2.089980 CCCGGACGGAGGTAGTATATG 58.910 57.143 13.13 0.00 37.50 1.78
1853 2566 2.290514 CCCGGACGGAGGTAGTATATGA 60.291 54.545 13.13 0.00 37.50 2.15
1854 2567 3.618351 CCGGACGGAGGTAGTATATGAT 58.382 50.000 4.40 0.00 37.50 2.45
1855 2568 4.384537 CCCGGACGGAGGTAGTATATGATA 60.385 50.000 13.13 0.00 37.50 2.15
1856 2569 4.574013 CCGGACGGAGGTAGTATATGATAC 59.426 50.000 4.40 0.00 37.50 2.24
1857 2570 4.574013 CGGACGGAGGTAGTATATGATACC 59.426 50.000 9.22 9.22 41.56 2.73
1858 2571 5.503927 GGACGGAGGTAGTATATGATACCA 58.496 45.833 16.36 0.00 43.33 3.25
1859 2572 6.127793 GGACGGAGGTAGTATATGATACCAT 58.872 44.000 16.36 5.80 43.33 3.55
1860 2573 6.606395 GGACGGAGGTAGTATATGATACCATT 59.394 42.308 16.36 1.94 43.33 3.16
1861 2574 7.406031 ACGGAGGTAGTATATGATACCATTG 57.594 40.000 16.36 9.70 43.33 2.82
1862 2575 7.179966 ACGGAGGTAGTATATGATACCATTGA 58.820 38.462 16.36 0.00 43.33 2.57
1863 2576 7.672660 ACGGAGGTAGTATATGATACCATTGAA 59.327 37.037 16.36 0.00 43.33 2.69
1882 2595 8.680903 CCATTGAATTACTGACTGAGCTTTATT 58.319 33.333 0.00 0.00 0.00 1.40
1886 2599 9.151471 TGAATTACTGACTGAGCTTTATTACAC 57.849 33.333 0.00 0.00 0.00 2.90
1887 2600 9.372369 GAATTACTGACTGAGCTTTATTACACT 57.628 33.333 0.00 0.00 0.00 3.55
1888 2601 8.934507 ATTACTGACTGAGCTTTATTACACTC 57.065 34.615 0.00 0.00 0.00 3.51
1890 2603 5.482175 ACTGACTGAGCTTTATTACACTCCT 59.518 40.000 0.00 0.00 0.00 3.69
1891 2604 6.663953 ACTGACTGAGCTTTATTACACTCCTA 59.336 38.462 0.00 0.00 0.00 2.94
1892 2605 7.343316 ACTGACTGAGCTTTATTACACTCCTAT 59.657 37.037 0.00 0.00 0.00 2.57
1893 2606 8.762481 TGACTGAGCTTTATTACACTCCTATA 57.238 34.615 0.00 0.00 0.00 1.31
1894 2607 9.368416 TGACTGAGCTTTATTACACTCCTATAT 57.632 33.333 0.00 0.00 0.00 0.86
1897 2610 9.776158 CTGAGCTTTATTACACTCCTATATACG 57.224 37.037 0.00 0.00 0.00 3.06
1898 2611 9.293404 TGAGCTTTATTACACTCCTATATACGT 57.707 33.333 0.00 0.00 0.00 3.57
1908 2621 8.632906 ACACTCCTATATACGTATAAAGCTGT 57.367 34.615 18.69 12.12 0.00 4.40
2173 2886 3.834799 GAGATCCGCGACCCCGTT 61.835 66.667 8.23 0.00 38.24 4.44
2179 2892 4.745751 CGCGACCCCGTTAAGGCA 62.746 66.667 0.00 0.00 39.21 4.75
2530 3249 2.927856 ATGACACCGGGGCAGTCA 60.928 61.111 18.95 18.95 45.26 3.41
2664 3383 2.690735 CGTACTGATCGACGTGTACTG 58.309 52.381 16.32 9.64 34.75 2.74
2665 3384 2.093310 CGTACTGATCGACGTGTACTGT 59.907 50.000 16.32 0.00 34.75 3.55
2666 3385 2.613730 ACTGATCGACGTGTACTGTG 57.386 50.000 0.00 0.00 0.00 3.66
2667 3386 1.878088 ACTGATCGACGTGTACTGTGT 59.122 47.619 0.00 0.00 0.00 3.72
2668 3387 3.069289 ACTGATCGACGTGTACTGTGTA 58.931 45.455 0.00 0.00 0.00 2.90
2669 3388 3.120408 ACTGATCGACGTGTACTGTGTAC 60.120 47.826 0.00 1.33 0.00 2.90
2670 3389 2.807392 TGATCGACGTGTACTGTGTACA 59.193 45.455 0.00 6.48 0.00 2.90
2671 3390 3.437741 TGATCGACGTGTACTGTGTACAT 59.562 43.478 12.74 0.00 0.00 2.29
2672 3391 3.191735 TCGACGTGTACTGTGTACATG 57.808 47.619 21.44 21.44 39.60 3.21
2673 3392 2.807392 TCGACGTGTACTGTGTACATGA 59.193 45.455 26.77 14.62 37.74 3.07
2674 3393 3.120442 TCGACGTGTACTGTGTACATGAG 60.120 47.826 26.77 20.84 37.74 2.90
2675 3394 3.120442 CGACGTGTACTGTGTACATGAGA 60.120 47.826 26.77 0.33 37.74 3.27
2747 3466 1.755161 CGTCGTATCCTGTGAATCCG 58.245 55.000 0.00 0.00 0.00 4.18
2923 3642 4.085733 CCCATTCGTATCTCTCCTGATCT 58.914 47.826 0.00 0.00 0.00 2.75
3019 3738 2.093306 TGCATCTACCAACGTCCTTG 57.907 50.000 0.00 0.00 0.00 3.61
3051 3779 2.749466 GCATCTCCCAATTCCCGATCAA 60.749 50.000 0.00 0.00 0.00 2.57
3155 3883 1.743772 CGACGGAAAGCATCTCCCAAT 60.744 52.381 0.00 0.00 0.00 3.16
3351 4086 6.068794 ACCCTCCTTCCATAAATTAAGAAGCT 60.069 38.462 9.40 0.00 35.47 3.74
3415 4150 6.470278 CATCTCATTTGCCCTGATATGTCTA 58.530 40.000 0.00 0.00 0.00 2.59
3436 4171 4.696479 ATCCAAAGCCCTATGAGTACAG 57.304 45.455 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.340950 TGCATATCTATCGACCACAGACAA 59.659 41.667 0.00 0.00 0.00 3.18
1 2 3.888930 TGCATATCTATCGACCACAGACA 59.111 43.478 0.00 0.00 0.00 3.41
2 3 4.505313 TGCATATCTATCGACCACAGAC 57.495 45.455 0.00 0.00 0.00 3.51
3 4 5.728637 ATTGCATATCTATCGACCACAGA 57.271 39.130 0.00 0.00 0.00 3.41
4 5 5.390251 GCAATTGCATATCTATCGACCACAG 60.390 44.000 25.36 0.00 41.59 3.66
5 6 4.452114 GCAATTGCATATCTATCGACCACA 59.548 41.667 25.36 0.00 41.59 4.17
6 7 4.962693 GCAATTGCATATCTATCGACCAC 58.037 43.478 25.36 0.00 41.59 4.16
27 28 2.260869 ACATCCGTTGGCACTGTGC 61.261 57.895 24.02 24.02 44.08 4.57
28 29 1.575922 CACATCCGTTGGCACTGTG 59.424 57.895 2.76 2.76 0.00 3.66
29 30 2.260869 GCACATCCGTTGGCACTGT 61.261 57.895 0.00 0.00 0.00 3.55
30 31 1.794151 TTGCACATCCGTTGGCACTG 61.794 55.000 0.00 0.00 33.18 3.66
31 32 1.528076 TTGCACATCCGTTGGCACT 60.528 52.632 0.00 0.00 33.18 4.40
32 33 1.371635 GTTGCACATCCGTTGGCAC 60.372 57.895 0.00 0.00 33.18 5.01
33 34 1.528076 AGTTGCACATCCGTTGGCA 60.528 52.632 0.00 0.00 32.07 4.92
34 35 1.081242 CAGTTGCACATCCGTTGGC 60.081 57.895 0.00 0.00 0.00 4.52
35 36 1.081242 GCAGTTGCACATCCGTTGG 60.081 57.895 0.00 0.00 41.59 3.77
36 37 4.539152 GCAGTTGCACATCCGTTG 57.461 55.556 0.00 0.00 41.59 4.10
53 54 4.761235 TCTTTCTTTTCATGCAGCTCTG 57.239 40.909 0.00 0.00 0.00 3.35
54 55 7.458409 TTTATCTTTCTTTTCATGCAGCTCT 57.542 32.000 0.00 0.00 0.00 4.09
55 56 8.699283 ATTTTATCTTTCTTTTCATGCAGCTC 57.301 30.769 0.00 0.00 0.00 4.09
104 105 8.553696 CCTTTTAGCTTTCTTTTCTACGTGTTA 58.446 33.333 0.00 0.00 0.00 2.41
105 106 7.415229 CCTTTTAGCTTTCTTTTCTACGTGTT 58.585 34.615 0.00 0.00 0.00 3.32
106 107 6.512903 GCCTTTTAGCTTTCTTTTCTACGTGT 60.513 38.462 0.00 0.00 0.00 4.49
107 108 5.851703 GCCTTTTAGCTTTCTTTTCTACGTG 59.148 40.000 0.00 0.00 0.00 4.49
108 109 5.529800 TGCCTTTTAGCTTTCTTTTCTACGT 59.470 36.000 0.00 0.00 0.00 3.57
109 110 5.997385 TGCCTTTTAGCTTTCTTTTCTACG 58.003 37.500 0.00 0.00 0.00 3.51
110 111 8.642908 TTTTGCCTTTTAGCTTTCTTTTCTAC 57.357 30.769 0.00 0.00 0.00 2.59
111 112 9.476202 GATTTTGCCTTTTAGCTTTCTTTTCTA 57.524 29.630 0.00 0.00 0.00 2.10
112 113 8.206867 AGATTTTGCCTTTTAGCTTTCTTTTCT 58.793 29.630 0.00 0.00 0.00 2.52
113 114 8.370493 AGATTTTGCCTTTTAGCTTTCTTTTC 57.630 30.769 0.00 0.00 0.00 2.29
114 115 9.261180 GTAGATTTTGCCTTTTAGCTTTCTTTT 57.739 29.630 0.00 0.00 0.00 2.27
115 116 8.642432 AGTAGATTTTGCCTTTTAGCTTTCTTT 58.358 29.630 0.00 0.00 0.00 2.52
116 117 8.183104 AGTAGATTTTGCCTTTTAGCTTTCTT 57.817 30.769 0.00 0.00 0.00 2.52
117 118 7.767250 AGTAGATTTTGCCTTTTAGCTTTCT 57.233 32.000 0.00 0.00 0.00 2.52
118 119 8.184848 CCTAGTAGATTTTGCCTTTTAGCTTTC 58.815 37.037 0.00 0.00 0.00 2.62
119 120 7.363007 GCCTAGTAGATTTTGCCTTTTAGCTTT 60.363 37.037 0.00 0.00 0.00 3.51
120 121 6.095580 GCCTAGTAGATTTTGCCTTTTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
121 122 5.590663 GCCTAGTAGATTTTGCCTTTTAGCT 59.409 40.000 0.00 0.00 0.00 3.32
122 123 5.504173 CGCCTAGTAGATTTTGCCTTTTAGC 60.504 44.000 0.00 0.00 0.00 3.09
123 124 5.585047 ACGCCTAGTAGATTTTGCCTTTTAG 59.415 40.000 0.00 0.00 0.00 1.85
124 125 5.493809 ACGCCTAGTAGATTTTGCCTTTTA 58.506 37.500 0.00 0.00 0.00 1.52
125 126 4.332828 ACGCCTAGTAGATTTTGCCTTTT 58.667 39.130 0.00 0.00 0.00 2.27
126 127 3.951663 ACGCCTAGTAGATTTTGCCTTT 58.048 40.909 0.00 0.00 0.00 3.11
127 128 3.629142 ACGCCTAGTAGATTTTGCCTT 57.371 42.857 0.00 0.00 0.00 4.35
128 129 3.490419 CGTACGCCTAGTAGATTTTGCCT 60.490 47.826 0.52 0.00 35.72 4.75
129 130 2.793232 CGTACGCCTAGTAGATTTTGCC 59.207 50.000 0.52 0.00 35.72 4.52
130 131 3.699067 TCGTACGCCTAGTAGATTTTGC 58.301 45.455 11.24 0.00 35.72 3.68
131 132 5.975344 TCAATCGTACGCCTAGTAGATTTTG 59.025 40.000 11.24 0.00 35.72 2.44
132 133 5.975939 GTCAATCGTACGCCTAGTAGATTTT 59.024 40.000 11.24 0.00 35.72 1.82
133 134 5.517904 GTCAATCGTACGCCTAGTAGATTT 58.482 41.667 11.24 0.00 35.72 2.17
134 135 4.319333 CGTCAATCGTACGCCTAGTAGATT 60.319 45.833 11.24 0.00 35.72 2.40
135 136 3.186001 CGTCAATCGTACGCCTAGTAGAT 59.814 47.826 11.24 0.00 35.72 1.98
136 137 2.541346 CGTCAATCGTACGCCTAGTAGA 59.459 50.000 11.24 0.00 35.72 2.59
137 138 2.541346 TCGTCAATCGTACGCCTAGTAG 59.459 50.000 11.24 0.00 40.12 2.57
138 139 2.549926 TCGTCAATCGTACGCCTAGTA 58.450 47.619 11.24 0.00 40.12 1.82
139 140 1.372582 TCGTCAATCGTACGCCTAGT 58.627 50.000 11.24 0.00 40.12 2.57
140 141 2.682952 ATCGTCAATCGTACGCCTAG 57.317 50.000 11.24 0.30 40.12 3.02
141 142 4.213906 TGATAATCGTCAATCGTACGCCTA 59.786 41.667 11.24 0.00 40.12 3.93
142 143 3.004002 TGATAATCGTCAATCGTACGCCT 59.996 43.478 11.24 0.00 40.12 5.52
143 144 3.302555 TGATAATCGTCAATCGTACGCC 58.697 45.455 11.24 0.00 40.12 5.68
144 145 5.496330 AATGATAATCGTCAATCGTACGC 57.504 39.130 11.24 0.00 40.12 4.42
145 146 7.777235 ACTAATGATAATCGTCAATCGTACG 57.223 36.000 9.53 9.53 41.64 3.67
148 149 9.613957 CTCTAACTAATGATAATCGTCAATCGT 57.386 33.333 0.00 0.00 40.80 3.73
149 150 8.579600 GCTCTAACTAATGATAATCGTCAATCG 58.420 37.037 0.00 0.00 41.41 3.34
150 151 9.411801 TGCTCTAACTAATGATAATCGTCAATC 57.588 33.333 0.00 0.00 0.00 2.67
151 152 9.764363 TTGCTCTAACTAATGATAATCGTCAAT 57.236 29.630 0.00 0.00 0.00 2.57
152 153 9.764363 ATTGCTCTAACTAATGATAATCGTCAA 57.236 29.630 0.00 0.00 0.00 3.18
153 154 9.196552 CATTGCTCTAACTAATGATAATCGTCA 57.803 33.333 0.00 0.00 34.55 4.35
154 155 8.165428 GCATTGCTCTAACTAATGATAATCGTC 58.835 37.037 0.16 0.00 34.55 4.20
155 156 7.875041 AGCATTGCTCTAACTAATGATAATCGT 59.125 33.333 5.03 0.00 30.62 3.73
156 157 8.249327 AGCATTGCTCTAACTAATGATAATCG 57.751 34.615 5.03 0.00 30.62 3.34
159 160 9.261180 GTGTAGCATTGCTCTAACTAATGATAA 57.739 33.333 15.81 0.00 40.44 1.75
160 161 7.595130 CGTGTAGCATTGCTCTAACTAATGATA 59.405 37.037 15.81 0.00 40.44 2.15
161 162 6.422100 CGTGTAGCATTGCTCTAACTAATGAT 59.578 38.462 15.81 0.00 40.44 2.45
162 163 5.748630 CGTGTAGCATTGCTCTAACTAATGA 59.251 40.000 15.81 0.00 40.44 2.57
163 164 5.967469 CGTGTAGCATTGCTCTAACTAATG 58.033 41.667 15.81 0.00 40.44 1.90
180 181 5.676744 CGTAAAAATCCATTCATGCGTGTAG 59.323 40.000 5.68 0.00 0.00 2.74
181 182 5.447954 CCGTAAAAATCCATTCATGCGTGTA 60.448 40.000 5.68 0.00 0.00 2.90
182 183 4.411327 CGTAAAAATCCATTCATGCGTGT 58.589 39.130 5.68 0.00 0.00 4.49
183 184 3.790820 CCGTAAAAATCCATTCATGCGTG 59.209 43.478 0.00 0.00 0.00 5.34
184 185 3.181491 CCCGTAAAAATCCATTCATGCGT 60.181 43.478 0.00 0.00 0.00 5.24
185 186 3.066064 TCCCGTAAAAATCCATTCATGCG 59.934 43.478 0.00 0.00 0.00 4.73
211 212 1.451028 GCCAGCTAAGCCACTCCAG 60.451 63.158 0.00 0.00 0.00 3.86
278 283 4.462133 GGCCTTTTCCTAACTAATCTCCC 58.538 47.826 0.00 0.00 0.00 4.30
313 319 4.114058 TCTATACACACGGGCTGTTTAC 57.886 45.455 0.00 0.00 0.00 2.01
364 370 1.361668 CGGGATCAACGAAGTGCCTG 61.362 60.000 3.23 0.00 45.00 4.85
372 378 2.671914 CGGTCTTTTACGGGATCAACGA 60.672 50.000 14.79 0.00 34.93 3.85
373 379 1.657094 CGGTCTTTTACGGGATCAACG 59.343 52.381 7.40 7.40 37.36 4.10
402 1062 1.650912 CCATGCGAGCAATGCTACC 59.349 57.895 8.12 2.38 39.88 3.18
419 1079 8.681486 TTTTTGGAGTAAGTTAGACTTAACCC 57.319 34.615 15.82 13.23 41.80 4.11
472 1132 9.420551 GAGATTTTATGGTAAGTCCCGTAATAG 57.579 37.037 0.00 0.00 36.20 1.73
473 1133 9.151177 AGAGATTTTATGGTAAGTCCCGTAATA 57.849 33.333 0.00 0.00 36.20 0.98
474 1134 8.030913 AGAGATTTTATGGTAAGTCCCGTAAT 57.969 34.615 0.00 0.00 36.20 1.89
475 1135 7.418254 GGAGAGATTTTATGGTAAGTCCCGTAA 60.418 40.741 0.00 0.00 34.81 3.18
476 1136 6.041296 GGAGAGATTTTATGGTAAGTCCCGTA 59.959 42.308 0.00 0.00 34.77 4.02
477 1137 5.163332 GGAGAGATTTTATGGTAAGTCCCGT 60.163 44.000 0.00 0.00 34.77 5.28
478 1138 5.163343 TGGAGAGATTTTATGGTAAGTCCCG 60.163 44.000 0.00 0.00 34.77 5.14
479 1139 6.056236 GTGGAGAGATTTTATGGTAAGTCCC 58.944 44.000 0.00 0.00 34.77 4.46
480 1140 6.056236 GGTGGAGAGATTTTATGGTAAGTCC 58.944 44.000 0.00 0.00 0.00 3.85
481 1141 5.753921 CGGTGGAGAGATTTTATGGTAAGTC 59.246 44.000 0.00 0.00 0.00 3.01
553 1213 1.345415 CTTTGGCTGGCAGTTTTCCAT 59.655 47.619 17.16 0.00 32.37 3.41
758 1428 1.152398 GACCAGGGGGCTATACCGA 60.152 63.158 0.00 0.00 40.62 4.69
761 1431 3.315596 AGTAAAGACCAGGGGGCTATAC 58.684 50.000 0.00 0.00 42.44 1.47
795 1465 2.638480 AGTAGCTGCTGTGGTTTTGA 57.362 45.000 13.43 0.00 0.00 2.69
796 1466 2.744202 CCTAGTAGCTGCTGTGGTTTTG 59.256 50.000 15.31 0.00 0.00 2.44
797 1467 2.876079 GCCTAGTAGCTGCTGTGGTTTT 60.876 50.000 15.31 0.00 0.00 2.43
799 1469 0.250513 GCCTAGTAGCTGCTGTGGTT 59.749 55.000 15.31 0.00 0.00 3.67
800 1470 1.901085 GCCTAGTAGCTGCTGTGGT 59.099 57.895 15.31 0.00 0.00 4.16
801 1471 1.227089 CGCCTAGTAGCTGCTGTGG 60.227 63.158 15.31 16.40 0.00 4.17
802 1472 0.173481 TTCGCCTAGTAGCTGCTGTG 59.827 55.000 15.31 5.49 0.00 3.66
803 1473 0.457851 CTTCGCCTAGTAGCTGCTGT 59.542 55.000 15.31 1.71 0.00 4.40
804 1474 0.249238 CCTTCGCCTAGTAGCTGCTG 60.249 60.000 15.31 4.54 0.00 4.41
1091 1781 2.747822 GCTGGTAGCTCGTCGTCGA 61.748 63.158 4.42 4.42 44.12 4.20
1242 1944 0.329261 AGGCTGTATGGAAGCTGCAA 59.671 50.000 1.02 0.00 40.64 4.08
1276 1980 4.925646 GCAAAGATTCCAAGGACATCAAAC 59.074 41.667 11.30 0.00 0.00 2.93
1343 2047 9.146984 CGTCTTATCGATCTAGAGTTCTCTATT 57.853 37.037 0.00 2.14 0.00 1.73
1367 2071 2.618709 CCTTTTCTGCTTTCCTGTTCGT 59.381 45.455 0.00 0.00 0.00 3.85
1387 2091 5.507985 CCTTCCATCTCGCAATTTTTATCCC 60.508 44.000 0.00 0.00 0.00 3.85
1388 2092 5.299279 TCCTTCCATCTCGCAATTTTTATCC 59.701 40.000 0.00 0.00 0.00 2.59
1389 2093 6.377327 TCCTTCCATCTCGCAATTTTTATC 57.623 37.500 0.00 0.00 0.00 1.75
1391 2095 5.125417 CCTTCCTTCCATCTCGCAATTTTTA 59.875 40.000 0.00 0.00 0.00 1.52
1393 2097 3.445096 CCTTCCTTCCATCTCGCAATTTT 59.555 43.478 0.00 0.00 0.00 1.82
1394 2098 3.019564 CCTTCCTTCCATCTCGCAATTT 58.980 45.455 0.00 0.00 0.00 1.82
1395 2099 2.648059 CCTTCCTTCCATCTCGCAATT 58.352 47.619 0.00 0.00 0.00 2.32
1397 2101 0.253044 CCCTTCCTTCCATCTCGCAA 59.747 55.000 0.00 0.00 0.00 4.85
1398 2102 0.617535 TCCCTTCCTTCCATCTCGCA 60.618 55.000 0.00 0.00 0.00 5.10
1399 2103 0.541863 TTCCCTTCCTTCCATCTCGC 59.458 55.000 0.00 0.00 0.00 5.03
1401 2105 2.236395 TCGTTTCCCTTCCTTCCATCTC 59.764 50.000 0.00 0.00 0.00 2.75
1402 2106 2.237392 CTCGTTTCCCTTCCTTCCATCT 59.763 50.000 0.00 0.00 0.00 2.90
1403 2107 2.236395 TCTCGTTTCCCTTCCTTCCATC 59.764 50.000 0.00 0.00 0.00 3.51
1404 2108 2.266279 TCTCGTTTCCCTTCCTTCCAT 58.734 47.619 0.00 0.00 0.00 3.41
1405 2109 1.724545 TCTCGTTTCCCTTCCTTCCA 58.275 50.000 0.00 0.00 0.00 3.53
1460 2164 6.768381 AGTTCCAAAGTCTAAACTTCTCCAAG 59.232 38.462 0.00 0.00 45.07 3.61
1555 2259 4.142609 TGGAGGATGATTGTAAGACTGC 57.857 45.455 0.00 0.00 0.00 4.40
1558 2262 5.355350 CCAAGTTGGAGGATGATTGTAAGAC 59.645 44.000 17.60 0.00 40.96 3.01
1579 2290 4.629200 CAGCTAGTTTGTTGTTTTTGCCAA 59.371 37.500 0.00 0.00 0.00 4.52
1599 2312 1.931906 TGAGATGACGAAGCATCAGC 58.068 50.000 15.87 10.03 45.52 4.26
1602 2315 5.521735 ACAATAGTTGAGATGACGAAGCATC 59.478 40.000 8.79 8.79 43.88 3.91
1608 2321 8.996024 TTGATAAACAATAGTTGAGATGACGA 57.004 30.769 0.00 0.00 38.17 4.20
1610 2323 8.125448 GGCTTGATAAACAATAGTTGAGATGAC 58.875 37.037 0.00 0.00 38.17 3.06
1620 2333 5.053978 AGAGGGGGCTTGATAAACAATAG 57.946 43.478 0.00 0.00 37.88 1.73
1624 2337 5.466127 AATAAGAGGGGGCTTGATAAACA 57.534 39.130 0.00 0.00 0.00 2.83
1625 2338 6.406961 CCAAAATAAGAGGGGGCTTGATAAAC 60.407 42.308 0.00 0.00 0.00 2.01
1627 2340 5.208121 CCAAAATAAGAGGGGGCTTGATAA 58.792 41.667 0.00 0.00 0.00 1.75
1628 2341 4.387437 CCCAAAATAAGAGGGGGCTTGATA 60.387 45.833 0.00 0.00 38.98 2.15
1629 2342 3.630828 CCCAAAATAAGAGGGGGCTTGAT 60.631 47.826 0.00 0.00 38.98 2.57
1630 2343 2.292192 CCCAAAATAAGAGGGGGCTTGA 60.292 50.000 0.00 0.00 38.98 3.02
1631 2344 2.110578 CCCAAAATAAGAGGGGGCTTG 58.889 52.381 0.00 0.00 38.98 4.01
1635 2348 3.680777 TTAGCCCAAAATAAGAGGGGG 57.319 47.619 0.00 0.00 43.04 5.40
1636 2349 6.560003 AATTTTAGCCCAAAATAAGAGGGG 57.440 37.500 6.96 0.00 44.37 4.79
1637 2350 7.549134 GTCAAATTTTAGCCCAAAATAAGAGGG 59.451 37.037 6.96 0.00 44.37 4.30
1638 2351 7.549134 GGTCAAATTTTAGCCCAAAATAAGAGG 59.451 37.037 6.96 0.00 44.37 3.69
1641 2354 8.503196 GTTGGTCAAATTTTAGCCCAAAATAAG 58.497 33.333 6.96 4.21 44.37 1.73
1642 2355 7.993183 TGTTGGTCAAATTTTAGCCCAAAATAA 59.007 29.630 6.96 0.00 44.37 1.40
1643 2356 7.509546 TGTTGGTCAAATTTTAGCCCAAAATA 58.490 30.769 6.96 0.00 44.37 1.40
1647 2360 5.359194 TTGTTGGTCAAATTTTAGCCCAA 57.641 34.783 0.00 2.24 32.64 4.12
1648 2361 5.359194 TTTGTTGGTCAAATTTTAGCCCA 57.641 34.783 0.00 0.00 40.56 5.36
1681 2394 9.612066 ATTTTTGTGACATCTGGTTTACATTTT 57.388 25.926 0.00 0.00 30.35 1.82
1682 2395 9.612066 AATTTTTGTGACATCTGGTTTACATTT 57.388 25.926 0.00 0.00 30.35 2.32
1690 2403 9.912634 CAAAGTATAATTTTTGTGACATCTGGT 57.087 29.630 0.00 0.00 31.36 4.00
1691 2404 9.357652 CCAAAGTATAATTTTTGTGACATCTGG 57.642 33.333 0.00 0.00 33.52 3.86
1692 2405 8.863049 GCCAAAGTATAATTTTTGTGACATCTG 58.137 33.333 0.00 0.00 33.52 2.90
1693 2406 8.034804 GGCCAAAGTATAATTTTTGTGACATCT 58.965 33.333 0.00 0.00 33.52 2.90
1694 2407 7.816995 TGGCCAAAGTATAATTTTTGTGACATC 59.183 33.333 0.61 0.00 33.52 3.06
1695 2408 7.675062 TGGCCAAAGTATAATTTTTGTGACAT 58.325 30.769 0.61 0.00 33.52 3.06
1696 2409 7.055667 TGGCCAAAGTATAATTTTTGTGACA 57.944 32.000 0.61 0.00 33.52 3.58
1697 2410 7.360017 GCTTGGCCAAAGTATAATTTTTGTGAC 60.360 37.037 20.91 0.00 38.25 3.67
1698 2411 6.648725 GCTTGGCCAAAGTATAATTTTTGTGA 59.351 34.615 20.91 0.00 38.25 3.58
1699 2412 6.650390 AGCTTGGCCAAAGTATAATTTTTGTG 59.350 34.615 20.91 2.66 38.25 3.33
1700 2413 6.768483 AGCTTGGCCAAAGTATAATTTTTGT 58.232 32.000 20.91 0.00 38.25 2.83
1701 2414 7.099120 AGAGCTTGGCCAAAGTATAATTTTTG 58.901 34.615 20.91 3.82 38.25 2.44
1702 2415 7.244886 AGAGCTTGGCCAAAGTATAATTTTT 57.755 32.000 20.91 0.00 38.25 1.94
1703 2416 6.857437 AGAGCTTGGCCAAAGTATAATTTT 57.143 33.333 20.91 0.00 38.25 1.82
1704 2417 6.857437 AAGAGCTTGGCCAAAGTATAATTT 57.143 33.333 20.91 3.55 38.25 1.82
1705 2418 6.437162 TGAAAGAGCTTGGCCAAAGTATAATT 59.563 34.615 20.91 8.78 38.25 1.40
1706 2419 5.951747 TGAAAGAGCTTGGCCAAAGTATAAT 59.048 36.000 20.91 3.24 38.25 1.28
1707 2420 5.321102 TGAAAGAGCTTGGCCAAAGTATAA 58.679 37.500 20.91 0.00 38.25 0.98
1708 2421 4.917385 TGAAAGAGCTTGGCCAAAGTATA 58.083 39.130 20.91 0.00 38.25 1.47
1709 2422 3.766545 TGAAAGAGCTTGGCCAAAGTAT 58.233 40.909 20.91 3.66 38.25 2.12
1710 2423 3.222173 TGAAAGAGCTTGGCCAAAGTA 57.778 42.857 20.91 0.00 38.25 2.24
1711 2424 2.071778 TGAAAGAGCTTGGCCAAAGT 57.928 45.000 20.91 9.47 38.25 2.66
1712 2425 3.457610 TTTGAAAGAGCTTGGCCAAAG 57.542 42.857 20.91 14.43 39.07 2.77
1713 2426 4.343526 TGTATTTGAAAGAGCTTGGCCAAA 59.656 37.500 20.91 0.00 0.00 3.28
1714 2427 3.894427 TGTATTTGAAAGAGCTTGGCCAA 59.106 39.130 19.25 19.25 0.00 4.52
1715 2428 3.495331 TGTATTTGAAAGAGCTTGGCCA 58.505 40.909 0.00 0.00 0.00 5.36
1716 2429 4.519540 TTGTATTTGAAAGAGCTTGGCC 57.480 40.909 0.00 0.00 0.00 5.36
1717 2430 5.578336 GGATTTGTATTTGAAAGAGCTTGGC 59.422 40.000 0.00 0.00 0.00 4.52
1718 2431 6.101997 GGGATTTGTATTTGAAAGAGCTTGG 58.898 40.000 0.00 0.00 0.00 3.61
1719 2432 6.690530 TGGGATTTGTATTTGAAAGAGCTTG 58.309 36.000 0.00 0.00 0.00 4.01
1720 2433 6.721208 TCTGGGATTTGTATTTGAAAGAGCTT 59.279 34.615 0.00 0.00 0.00 3.74
1721 2434 6.248433 TCTGGGATTTGTATTTGAAAGAGCT 58.752 36.000 0.00 0.00 0.00 4.09
1722 2435 6.151817 ACTCTGGGATTTGTATTTGAAAGAGC 59.848 38.462 0.00 0.00 32.54 4.09
1723 2436 7.175641 ACACTCTGGGATTTGTATTTGAAAGAG 59.824 37.037 0.00 0.00 34.87 2.85
1724 2437 7.004086 ACACTCTGGGATTTGTATTTGAAAGA 58.996 34.615 0.00 0.00 0.00 2.52
1725 2438 7.219484 ACACTCTGGGATTTGTATTTGAAAG 57.781 36.000 0.00 0.00 0.00 2.62
1726 2439 7.942341 AGTACACTCTGGGATTTGTATTTGAAA 59.058 33.333 0.00 0.00 0.00 2.69
1727 2440 7.458397 AGTACACTCTGGGATTTGTATTTGAA 58.542 34.615 0.00 0.00 0.00 2.69
1728 2441 7.016153 AGTACACTCTGGGATTTGTATTTGA 57.984 36.000 0.00 0.00 0.00 2.69
1729 2442 7.687941 AAGTACACTCTGGGATTTGTATTTG 57.312 36.000 0.00 0.00 0.00 2.32
1730 2443 8.706322 AAAAGTACACTCTGGGATTTGTATTT 57.294 30.769 0.00 0.00 0.00 1.40
1731 2444 8.576442 CAAAAAGTACACTCTGGGATTTGTATT 58.424 33.333 0.00 0.00 0.00 1.89
1732 2445 7.724061 ACAAAAAGTACACTCTGGGATTTGTAT 59.276 33.333 0.00 0.00 36.89 2.29
1733 2446 7.057894 ACAAAAAGTACACTCTGGGATTTGTA 58.942 34.615 0.00 0.00 36.89 2.41
1734 2447 5.891551 ACAAAAAGTACACTCTGGGATTTGT 59.108 36.000 0.00 0.00 34.64 2.83
1735 2448 6.391227 ACAAAAAGTACACTCTGGGATTTG 57.609 37.500 0.00 0.00 0.00 2.32
1736 2449 6.206829 GCTACAAAAAGTACACTCTGGGATTT 59.793 38.462 0.00 0.00 0.00 2.17
1737 2450 5.705905 GCTACAAAAAGTACACTCTGGGATT 59.294 40.000 0.00 0.00 0.00 3.01
1738 2451 5.221843 TGCTACAAAAAGTACACTCTGGGAT 60.222 40.000 0.00 0.00 0.00 3.85
1739 2452 4.101898 TGCTACAAAAAGTACACTCTGGGA 59.898 41.667 0.00 0.00 0.00 4.37
1740 2453 4.385825 TGCTACAAAAAGTACACTCTGGG 58.614 43.478 0.00 0.00 0.00 4.45
1741 2454 7.849804 ATATGCTACAAAAAGTACACTCTGG 57.150 36.000 0.00 0.00 0.00 3.86
1774 2487 9.434420 CTTTGACCATTCATTTGGCTAATAAAA 57.566 29.630 0.00 0.00 40.68 1.52
1778 2491 6.610075 ACTTTGACCATTCATTTGGCTAAT 57.390 33.333 0.00 0.00 40.68 1.73
1781 2494 4.961438 AACTTTGACCATTCATTTGGCT 57.039 36.364 0.00 0.00 40.68 4.75
1782 2495 4.815846 ACAAACTTTGACCATTCATTTGGC 59.184 37.500 8.55 0.00 40.68 4.52
1784 2497 7.775397 AAGACAAACTTTGACCATTCATTTG 57.225 32.000 8.55 0.00 36.18 2.32
1785 2498 9.883142 TTTAAGACAAACTTTGACCATTCATTT 57.117 25.926 8.55 0.00 39.72 2.32
1799 2512 8.329502 AGGCCATCTAGTATTTTAAGACAAACT 58.670 33.333 5.01 0.00 0.00 2.66
1800 2513 8.398665 CAGGCCATCTAGTATTTTAAGACAAAC 58.601 37.037 5.01 0.00 0.00 2.93
1801 2514 8.325787 TCAGGCCATCTAGTATTTTAAGACAAA 58.674 33.333 5.01 0.00 0.00 2.83
1802 2515 7.857456 TCAGGCCATCTAGTATTTTAAGACAA 58.143 34.615 5.01 0.00 0.00 3.18
1803 2516 7.432148 TCAGGCCATCTAGTATTTTAAGACA 57.568 36.000 5.01 0.00 0.00 3.41
1804 2517 9.998106 TTATCAGGCCATCTAGTATTTTAAGAC 57.002 33.333 5.01 0.00 0.00 3.01
1807 2520 9.569122 GGTTTATCAGGCCATCTAGTATTTTAA 57.431 33.333 5.01 0.00 0.00 1.52
1808 2521 8.161425 GGGTTTATCAGGCCATCTAGTATTTTA 58.839 37.037 5.01 0.00 0.00 1.52
1809 2522 7.004691 GGGTTTATCAGGCCATCTAGTATTTT 58.995 38.462 5.01 0.00 0.00 1.82
1810 2523 6.543735 GGGTTTATCAGGCCATCTAGTATTT 58.456 40.000 5.01 0.00 0.00 1.40
1811 2524 5.280011 CGGGTTTATCAGGCCATCTAGTATT 60.280 44.000 5.01 0.00 0.00 1.89
1812 2525 4.223032 CGGGTTTATCAGGCCATCTAGTAT 59.777 45.833 5.01 0.00 0.00 2.12
1813 2526 3.576982 CGGGTTTATCAGGCCATCTAGTA 59.423 47.826 5.01 0.00 0.00 1.82
1814 2527 2.368875 CGGGTTTATCAGGCCATCTAGT 59.631 50.000 5.01 0.00 0.00 2.57
1815 2528 2.289694 CCGGGTTTATCAGGCCATCTAG 60.290 54.545 5.01 0.00 0.00 2.43
1816 2529 1.697432 CCGGGTTTATCAGGCCATCTA 59.303 52.381 5.01 0.00 0.00 1.98
1817 2530 0.474184 CCGGGTTTATCAGGCCATCT 59.526 55.000 5.01 0.00 0.00 2.90
1818 2531 0.472471 TCCGGGTTTATCAGGCCATC 59.528 55.000 5.01 0.00 0.00 3.51
1819 2532 0.182775 GTCCGGGTTTATCAGGCCAT 59.817 55.000 5.01 0.00 0.00 4.40
1820 2533 1.605453 GTCCGGGTTTATCAGGCCA 59.395 57.895 5.01 0.00 0.00 5.36
1821 2534 1.523032 CGTCCGGGTTTATCAGGCC 60.523 63.158 0.00 0.00 0.00 5.19
1822 2535 1.523032 CCGTCCGGGTTTATCAGGC 60.523 63.158 0.00 0.00 0.00 4.85
1823 2536 0.104304 CTCCGTCCGGGTTTATCAGG 59.896 60.000 0.00 0.00 37.00 3.86
1824 2537 0.104304 CCTCCGTCCGGGTTTATCAG 59.896 60.000 0.00 0.00 37.00 2.90
1825 2538 0.615544 ACCTCCGTCCGGGTTTATCA 60.616 55.000 0.00 0.00 37.00 2.15
1826 2539 1.339291 CTACCTCCGTCCGGGTTTATC 59.661 57.143 0.00 0.00 37.07 1.75
1827 2540 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
1828 2541 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
1829 2542 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
1830 2543 0.259938 ATACTACCTCCGTCCGGGTT 59.740 55.000 0.00 0.00 37.07 4.11
1831 2544 1.140312 TATACTACCTCCGTCCGGGT 58.860 55.000 0.00 0.00 39.40 5.28
1832 2545 2.089980 CATATACTACCTCCGTCCGGG 58.910 57.143 0.00 0.00 35.59 5.73
1833 2546 3.063510 TCATATACTACCTCCGTCCGG 57.936 52.381 0.00 0.00 0.00 5.14
1834 2547 4.574013 GGTATCATATACTACCTCCGTCCG 59.426 50.000 5.89 0.00 35.51 4.79
1835 2548 5.503927 TGGTATCATATACTACCTCCGTCC 58.496 45.833 12.00 0.00 38.57 4.79
1836 2549 7.338703 TCAATGGTATCATATACTACCTCCGTC 59.661 40.741 12.00 0.00 38.57 4.79
1837 2550 7.179966 TCAATGGTATCATATACTACCTCCGT 58.820 38.462 12.00 0.00 38.57 4.69
1838 2551 7.640597 TCAATGGTATCATATACTACCTCCG 57.359 40.000 12.00 3.66 38.57 4.63
1849 2562 9.987272 CTCAGTCAGTAATTCAATGGTATCATA 57.013 33.333 0.00 0.00 32.44 2.15
1850 2563 7.443575 GCTCAGTCAGTAATTCAATGGTATCAT 59.556 37.037 0.00 0.00 34.56 2.45
1851 2564 6.763135 GCTCAGTCAGTAATTCAATGGTATCA 59.237 38.462 0.00 0.00 0.00 2.15
1852 2565 6.989169 AGCTCAGTCAGTAATTCAATGGTATC 59.011 38.462 0.00 0.00 0.00 2.24
1853 2566 6.893583 AGCTCAGTCAGTAATTCAATGGTAT 58.106 36.000 0.00 0.00 0.00 2.73
1854 2567 6.299805 AGCTCAGTCAGTAATTCAATGGTA 57.700 37.500 0.00 0.00 0.00 3.25
1855 2568 5.171339 AGCTCAGTCAGTAATTCAATGGT 57.829 39.130 0.00 0.00 0.00 3.55
1856 2569 6.506500 AAAGCTCAGTCAGTAATTCAATGG 57.493 37.500 0.00 0.00 0.00 3.16
1859 2572 9.719355 TGTAATAAAGCTCAGTCAGTAATTCAA 57.281 29.630 0.00 0.00 0.00 2.69
1860 2573 9.151471 GTGTAATAAAGCTCAGTCAGTAATTCA 57.849 33.333 0.00 0.00 0.00 2.57
1861 2574 9.372369 AGTGTAATAAAGCTCAGTCAGTAATTC 57.628 33.333 0.00 0.00 0.00 2.17
1862 2575 9.372369 GAGTGTAATAAAGCTCAGTCAGTAATT 57.628 33.333 0.00 0.00 32.52 1.40
1863 2576 7.982354 GGAGTGTAATAAAGCTCAGTCAGTAAT 59.018 37.037 7.68 0.00 33.50 1.89
1871 2584 9.776158 CGTATATAGGAGTGTAATAAAGCTCAG 57.224 37.037 0.00 0.00 0.00 3.35
1882 2595 9.730705 ACAGCTTTATACGTATATAGGAGTGTA 57.269 33.333 25.06 4.91 0.00 2.90
1884 2597 7.485277 GCACAGCTTTATACGTATATAGGAGTG 59.515 40.741 25.06 23.02 0.00 3.51
1886 2599 7.535997 TGCACAGCTTTATACGTATATAGGAG 58.464 38.462 25.06 17.14 0.00 3.69
1887 2600 7.176165 ACTGCACAGCTTTATACGTATATAGGA 59.824 37.037 25.06 7.63 0.00 2.94
1888 2601 7.273598 CACTGCACAGCTTTATACGTATATAGG 59.726 40.741 25.06 16.16 0.00 2.57
1890 2603 7.040271 TCCACTGCACAGCTTTATACGTATATA 60.040 37.037 15.77 10.38 0.00 0.86
1891 2604 5.926542 CCACTGCACAGCTTTATACGTATAT 59.073 40.000 15.77 0.00 0.00 0.86
1892 2605 5.068067 TCCACTGCACAGCTTTATACGTATA 59.932 40.000 11.27 11.27 0.00 1.47
1893 2606 4.119862 CCACTGCACAGCTTTATACGTAT 58.880 43.478 13.54 13.54 0.00 3.06
1894 2607 3.193903 TCCACTGCACAGCTTTATACGTA 59.806 43.478 0.00 0.00 0.00 3.57
1895 2608 2.028476 TCCACTGCACAGCTTTATACGT 60.028 45.455 0.00 0.00 0.00 3.57
1896 2609 2.616960 TCCACTGCACAGCTTTATACG 58.383 47.619 0.00 0.00 0.00 3.06
1897 2610 4.542662 CATCCACTGCACAGCTTTATAC 57.457 45.455 0.00 0.00 0.00 1.47
2173 2886 2.959599 CATACGCGCGCTGCCTTA 60.960 61.111 32.58 14.38 42.08 2.69
2515 3234 2.125106 GATGACTGCCCCGGTGTC 60.125 66.667 0.00 3.96 0.00 3.67
2530 3249 4.849329 GCCGGCGTCGACGAAGAT 62.849 66.667 39.74 0.00 43.02 2.40
2574 3293 0.108186 GCCATATCCGCGATCATCCA 60.108 55.000 8.23 0.00 0.00 3.41
2721 3440 1.801771 CACAGGATACGACGCCAAAAA 59.198 47.619 0.00 0.00 46.39 1.94
2724 3443 0.604073 TTCACAGGATACGACGCCAA 59.396 50.000 0.00 0.00 46.39 4.52
2747 3466 2.821969 ACAGGGATTCACAAACATGAGC 59.178 45.455 0.00 0.00 0.00 4.26
2923 3642 3.125316 GTGTAGGTTGCAACGTGACTAA 58.875 45.455 29.76 10.82 0.00 2.24
2963 3682 0.381089 CCGAGTAGATGGTCGTGGTC 59.619 60.000 0.00 0.00 34.27 4.02
3019 3738 1.522580 GGAGATGCTTCCTGTCGCC 60.523 63.158 0.00 0.00 34.27 5.54
3155 3883 0.601057 TCTGCCGTTCTCATCGTCAA 59.399 50.000 0.00 0.00 0.00 3.18
3172 3900 1.037579 TGTCCGTCGAGATGGCATCT 61.038 55.000 29.19 29.19 43.70 2.90
3320 4055 1.500474 TATGGAAGGAGGGTGAGCAG 58.500 55.000 0.00 0.00 0.00 4.24
3351 4086 1.737838 CGGAGGCAAATGCTTGAGTA 58.262 50.000 5.25 0.00 41.70 2.59
3415 4150 3.392616 CCTGTACTCATAGGGCTTTGGAT 59.607 47.826 0.00 0.00 29.52 3.41
3436 4171 4.446371 AGCATAGTTCATGTTCTGTAGCC 58.554 43.478 0.00 0.00 36.95 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.