Multiple sequence alignment - TraesCS7D01G263900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263900 chr7D 100.000 8187 0 0 1 8187 244760198 244768384 0.000000e+00 15119.0
1 TraesCS7D01G263900 chr7B 94.335 3460 128 27 2943 6344 220123765 220127214 0.000000e+00 5241.0
2 TraesCS7D01G263900 chr7B 94.771 1243 50 9 1694 2929 220122238 220123472 0.000000e+00 1921.0
3 TraesCS7D01G263900 chr7B 90.398 1031 62 17 655 1660 220121216 220122234 0.000000e+00 1321.0
4 TraesCS7D01G263900 chr7B 92.387 486 30 4 6969 7448 220127894 220128378 0.000000e+00 686.0
5 TraesCS7D01G263900 chr7B 87.426 509 27 14 7686 8186 220128731 220129210 1.200000e-152 551.0
6 TraesCS7D01G263900 chr7B 92.077 366 22 5 6531 6889 220127529 220127894 7.330000e-140 508.0
7 TraesCS7D01G263900 chr7B 87.456 287 27 6 6247 6532 220127157 220127435 1.030000e-83 322.0
8 TraesCS7D01G263900 chr7B 82.368 380 43 17 1622 1986 71101954 71102324 7.980000e-80 309.0
9 TraesCS7D01G263900 chr7B 100.000 31 0 0 2931 2961 220123555 220123585 3.190000e-04 58.4
10 TraesCS7D01G263900 chr7A 92.126 1816 80 20 2931 4705 260895091 260896884 0.000000e+00 2503.0
11 TraesCS7D01G263900 chr7A 93.516 1681 71 11 4695 6344 260898397 260900070 0.000000e+00 2466.0
12 TraesCS7D01G263900 chr7A 89.794 1695 99 37 1 1660 260891854 260893509 0.000000e+00 2104.0
13 TraesCS7D01G263900 chr7A 94.231 1248 53 12 1694 2930 260893513 260894752 0.000000e+00 1888.0
14 TraesCS7D01G263900 chr7A 87.066 1268 77 32 6969 8187 260901015 260902244 0.000000e+00 1352.0
15 TraesCS7D01G263900 chr7A 89.849 463 19 12 6512 6968 260900532 260900972 3.320000e-158 569.0
16 TraesCS7D01G263900 chr7A 95.872 218 8 1 2711 2928 260894789 260895005 1.310000e-92 351.0
17 TraesCS7D01G263900 chr7A 80.083 241 36 6 1622 1855 56164609 56164844 1.410000e-37 169.0
18 TraesCS7D01G263900 chr7A 92.857 42 2 1 604 645 46097913 46097873 8.870000e-05 60.2
19 TraesCS7D01G263900 chr5B 81.726 394 44 20 1622 2000 107205310 107205690 3.710000e-78 303.0
20 TraesCS7D01G263900 chr5B 92.857 42 2 1 604 645 707433157 707433117 8.870000e-05 60.2
21 TraesCS7D01G263900 chr2A 81.333 375 50 14 1622 1986 174454154 174454518 3.740000e-73 287.0
22 TraesCS7D01G263900 chr3D 79.668 241 36 7 1622 1855 505954651 505954885 2.360000e-35 161.0
23 TraesCS7D01G263900 chr3D 92.500 40 2 1 606 645 161495955 161495917 1.000000e-03 56.5
24 TraesCS7D01G263900 chr5D 91.489 47 4 0 604 650 63094180 63094134 1.910000e-06 65.8
25 TraesCS7D01G263900 chr1A 95.238 42 1 1 604 645 461741168 461741128 1.910000e-06 65.8
26 TraesCS7D01G263900 chr1A 92.857 42 2 1 604 645 45829823 45829863 8.870000e-05 60.2
27 TraesCS7D01G263900 chr1A 96.970 33 1 0 244 276 344467136 344467104 1.000000e-03 56.5
28 TraesCS7D01G263900 chr6B 89.796 49 3 2 604 651 439481343 439481296 2.470000e-05 62.1
29 TraesCS7D01G263900 chr4D 91.111 45 3 1 604 648 346145399 346145356 8.870000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263900 chr7D 244760198 244768384 8186 False 15119.000000 15119 100.000000 1 8187 1 chr7D.!!$F1 8186
1 TraesCS7D01G263900 chr7B 220121216 220129210 7994 False 1326.050000 5241 92.356250 655 8186 8 chr7B.!!$F2 7531
2 TraesCS7D01G263900 chr7A 260891854 260902244 10390 False 1604.714286 2503 91.779143 1 8187 7 chr7A.!!$F2 8186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 914 0.107703 GCCATCCTCATCACGAACCA 60.108 55.0 0.00 0.0 0.00 3.67 F
1365 1401 0.250513 GATCTGTGACAGGGGTGGTC 59.749 60.0 13.33 0.0 35.83 4.02 F
1534 1572 0.540365 CTTTGGTGTGAGGCCATGGT 60.540 55.0 14.67 0.0 35.71 3.55 F
2592 2642 1.730851 AGGGGACGGGAATATCCTTC 58.269 55.0 0.00 0.0 36.57 3.46 F
3286 3873 0.040958 GCTCAACACTCGCAGGTTTG 60.041 55.0 0.00 0.0 0.00 2.93 F
4410 5020 0.321346 CCCTGCAAAATTGTCCCCAC 59.679 55.0 0.00 0.0 0.00 4.61 F
4423 5033 0.476771 TCCCCACTTGTCCCTTTCAC 59.523 55.0 0.00 0.0 0.00 3.18 F
5335 7487 0.391130 TGGTCAAGGCTGTACGCATC 60.391 55.0 10.92 0.0 41.67 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2025 2.233271 ACCTGCCACAGAAATGACAAG 58.767 47.619 0.00 0.00 32.44 3.16 R
2283 2333 2.435372 ACCAGCCTGAACAGAACAAA 57.565 45.000 3.19 0.00 0.00 2.83 R
2802 3107 2.724174 GGCAACATGCGAAACAAACTAC 59.276 45.455 0.00 0.00 46.21 2.73 R
3540 4141 2.464157 AGCACACTAAAGCACCTCTC 57.536 50.000 0.00 0.00 0.00 3.20 R
5136 7287 1.209019 GAAGCAGAATCAGCAGGAGGA 59.791 52.381 0.00 0.00 0.00 3.71 R
5335 7487 0.457035 GCACCACTAACATGCCCATG 59.543 55.000 6.71 6.71 44.15 3.66 R
5338 7490 1.883021 GTGCACCACTAACATGCCC 59.117 57.895 5.22 0.00 38.63 5.36 R
7197 9849 0.456653 GTGCATTTGTGCTTAGGCGG 60.457 55.000 0.00 0.00 42.25 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 9.783081 AAAATTTCTATGCCAATTCCATATTCC 57.217 29.630 0.00 0.00 0.00 3.01
105 107 8.495160 AATTTCTATGCCAATTCCATATTCCA 57.505 30.769 0.00 0.00 0.00 3.53
106 108 8.674925 ATTTCTATGCCAATTCCATATTCCAT 57.325 30.769 0.00 0.00 0.00 3.41
107 109 9.772605 ATTTCTATGCCAATTCCATATTCCATA 57.227 29.630 0.00 0.00 0.00 2.74
108 110 9.772605 TTTCTATGCCAATTCCATATTCCATAT 57.227 29.630 0.00 0.00 0.00 1.78
109 111 9.772605 TTCTATGCCAATTCCATATTCCATATT 57.227 29.630 0.00 0.00 0.00 1.28
144 146 5.523188 GTGCATTCAGATCACCAAAACAAAA 59.477 36.000 0.00 0.00 0.00 2.44
148 150 6.959671 TTCAGATCACCAAAACAAAAACAC 57.040 33.333 0.00 0.00 0.00 3.32
149 151 6.030548 TCAGATCACCAAAACAAAAACACA 57.969 33.333 0.00 0.00 0.00 3.72
151 153 5.636965 CAGATCACCAAAACAAAAACACACA 59.363 36.000 0.00 0.00 0.00 3.72
168 178 1.198408 CACACACATGCACACTCATCC 59.802 52.381 0.00 0.00 0.00 3.51
212 222 1.888512 TCTTGAAATTGGTGAGCCTGC 59.111 47.619 0.00 0.00 35.27 4.85
222 232 1.533625 GTGAGCCTGCATAAACACCA 58.466 50.000 0.00 0.00 0.00 4.17
262 272 4.675933 GCGCCGGACAACCTAAAATAAATT 60.676 41.667 5.05 0.00 0.00 1.82
294 304 5.724328 TGTGATTACTCTTGCCAAGTCTAG 58.276 41.667 4.04 0.00 0.00 2.43
306 316 3.786635 CCAAGTCTAGACCTTGAATCCG 58.213 50.000 24.62 11.86 0.00 4.18
308 318 3.383698 AGTCTAGACCTTGAATCCGGA 57.616 47.619 19.38 6.61 0.00 5.14
314 324 3.643237 AGACCTTGAATCCGGATAGACA 58.357 45.455 19.48 15.30 0.00 3.41
322 332 3.993103 CGGATAGACACGTTCCGC 58.007 61.111 12.27 0.00 45.04 5.54
345 355 7.273917 GCCACAAGGGATCTAGCCATTAGAT 62.274 48.000 0.00 0.00 42.38 1.98
372 382 3.846335 GCTTAGTTCACAGCAAATAACGC 59.154 43.478 0.00 0.00 35.95 4.84
373 383 4.378459 GCTTAGTTCACAGCAAATAACGCT 60.378 41.667 0.00 0.00 41.47 5.07
390 400 9.935682 AAATAACGCTATTGACATGATACAAAG 57.064 29.630 0.00 5.21 0.00 2.77
497 507 8.947055 ATATTACAAAATCAAACCAATGAGGC 57.053 30.769 0.00 0.00 43.14 4.70
498 508 4.686191 ACAAAATCAAACCAATGAGGCA 57.314 36.364 0.00 0.00 43.14 4.75
499 509 4.634199 ACAAAATCAAACCAATGAGGCAG 58.366 39.130 0.00 0.00 43.14 4.85
500 510 4.101430 ACAAAATCAAACCAATGAGGCAGT 59.899 37.500 0.00 0.00 43.14 4.40
501 511 3.947910 AATCAAACCAATGAGGCAGTG 57.052 42.857 0.00 0.00 43.14 3.66
502 512 2.655090 TCAAACCAATGAGGCAGTGA 57.345 45.000 0.00 0.00 43.14 3.41
503 513 2.229792 TCAAACCAATGAGGCAGTGAC 58.770 47.619 0.00 0.00 43.14 3.67
504 514 2.158623 TCAAACCAATGAGGCAGTGACT 60.159 45.455 0.00 0.00 43.14 3.41
526 536 1.332144 GCCCCACCATGTGCATCATT 61.332 55.000 0.00 0.00 34.09 2.57
532 542 3.118920 CCACCATGTGCATCATTCAATGT 60.119 43.478 0.00 0.00 34.09 2.71
536 546 6.759356 CACCATGTGCATCATTCAATGTAAAT 59.241 34.615 0.00 0.00 34.09 1.40
539 549 9.315525 CCATGTGCATCATTCAATGTAAATTTA 57.684 29.630 0.00 0.00 34.09 1.40
583 593 6.942886 TTAATTTGCACTTTAATTCCAGCG 57.057 33.333 0.00 0.00 0.00 5.18
610 620 9.360901 TCATAGATCATATGCTCCCTTAGATAC 57.639 37.037 2.94 0.00 0.00 2.24
614 624 6.798427 TCATATGCTCCCTTAGATACATCC 57.202 41.667 0.00 0.00 0.00 3.51
635 645 9.760077 ACATCCGTATCTAGACGAATTTAAAAT 57.240 29.630 5.60 0.00 45.82 1.82
849 869 1.255882 CTCTCCATCCATCTCCCTCG 58.744 60.000 0.00 0.00 0.00 4.63
894 914 0.107703 GCCATCCTCATCACGAACCA 60.108 55.000 0.00 0.00 0.00 3.67
1055 1078 2.093467 GTGCGCTTCTCTGAGATGTTTC 59.907 50.000 18.36 10.37 0.00 2.78
1066 1089 0.818296 AGATGTTTCTCCTCCGTCCG 59.182 55.000 0.00 0.00 0.00 4.79
1074 1097 4.003788 CCTCCGTCCGTGCCTGTT 62.004 66.667 0.00 0.00 0.00 3.16
1108 1131 2.170036 CGTGCGCGTGTTTCGATT 59.830 55.556 12.43 0.00 42.86 3.34
1243 1266 1.605712 GCTTAGCTCGTGTTGTGAGGT 60.606 52.381 0.00 0.17 45.42 3.85
1350 1378 3.662247 AGTTTTCGAGACGGTTGATCT 57.338 42.857 0.00 0.00 0.00 2.75
1351 1379 3.318017 AGTTTTCGAGACGGTTGATCTG 58.682 45.455 0.00 0.00 0.00 2.90
1352 1380 3.057734 GTTTTCGAGACGGTTGATCTGT 58.942 45.455 0.00 0.00 38.51 3.41
1353 1381 2.347697 TTCGAGACGGTTGATCTGTG 57.652 50.000 0.00 0.00 35.55 3.66
1354 1382 1.530323 TCGAGACGGTTGATCTGTGA 58.470 50.000 0.00 0.00 35.55 3.58
1365 1401 0.250513 GATCTGTGACAGGGGTGGTC 59.749 60.000 13.33 0.00 35.83 4.02
1369 1405 3.164977 TGACAGGGGTGGTCGCAA 61.165 61.111 0.00 0.00 38.10 4.85
1395 1431 3.575965 CCAGTCATGGGCTTTAAACAC 57.424 47.619 0.00 0.00 43.54 3.32
1398 1434 4.396166 CCAGTCATGGGCTTTAAACACTAG 59.604 45.833 0.00 0.00 43.54 2.57
1423 1459 2.030457 GCGTCGATTGTATGGAACCTTG 59.970 50.000 0.00 0.00 0.00 3.61
1426 1462 3.063997 GTCGATTGTATGGAACCTTGCTG 59.936 47.826 0.00 0.00 0.00 4.41
1428 1464 2.214376 TTGTATGGAACCTTGCTGGG 57.786 50.000 1.69 0.00 41.11 4.45
1452 1488 1.949525 GTGCAGCTCAGTTCTGGAAAA 59.050 47.619 0.00 0.00 33.75 2.29
1453 1489 2.555757 GTGCAGCTCAGTTCTGGAAAAT 59.444 45.455 0.00 0.00 33.75 1.82
1455 1491 2.094854 GCAGCTCAGTTCTGGAAAATGG 60.095 50.000 0.00 0.00 32.41 3.16
1457 1493 3.571401 CAGCTCAGTTCTGGAAAATGGTT 59.429 43.478 0.00 0.00 0.00 3.67
1459 1495 3.569701 GCTCAGTTCTGGAAAATGGTTGA 59.430 43.478 0.00 0.00 0.00 3.18
1460 1496 4.219288 GCTCAGTTCTGGAAAATGGTTGAT 59.781 41.667 0.00 0.00 0.00 2.57
1461 1497 5.620879 GCTCAGTTCTGGAAAATGGTTGATC 60.621 44.000 0.00 0.00 0.00 2.92
1462 1498 4.455533 TCAGTTCTGGAAAATGGTTGATCG 59.544 41.667 0.00 0.00 0.00 3.69
1463 1499 3.191371 AGTTCTGGAAAATGGTTGATCGC 59.809 43.478 0.00 0.00 0.00 4.58
1528 1565 2.084546 GACATACCTTTGGTGTGAGGC 58.915 52.381 17.99 5.59 45.67 4.70
1534 1572 0.540365 CTTTGGTGTGAGGCCATGGT 60.540 55.000 14.67 0.00 35.71 3.55
1593 1632 6.565435 GCATAGCAGTATTGTCTAAGCATGTG 60.565 42.308 9.98 0.00 32.75 3.21
1594 1633 3.624861 AGCAGTATTGTCTAAGCATGTGC 59.375 43.478 0.00 0.00 42.49 4.57
1619 1658 3.181474 GGACAGCTGGTGTAGAGGTATTC 60.181 52.174 19.93 0.91 40.56 1.75
1620 1659 2.427453 ACAGCTGGTGTAGAGGTATTCG 59.573 50.000 19.93 0.00 37.75 3.34
1621 1660 2.032620 AGCTGGTGTAGAGGTATTCGG 58.967 52.381 0.00 0.00 0.00 4.30
1639 1678 2.158740 TCGGGGTTGTTCTGATTTCACA 60.159 45.455 0.00 0.00 0.00 3.58
1660 1699 6.098124 TCACAAGATTGAAAGAACCCAACATT 59.902 34.615 0.00 0.00 0.00 2.71
1661 1700 6.201425 CACAAGATTGAAAGAACCCAACATTG 59.799 38.462 0.00 0.00 32.17 2.82
1663 1702 6.336842 AGATTGAAAGAACCCAACATTGAG 57.663 37.500 0.00 0.00 0.00 3.02
1664 1703 5.835280 AGATTGAAAGAACCCAACATTGAGT 59.165 36.000 0.00 0.00 0.00 3.41
1665 1704 5.930837 TTGAAAGAACCCAACATTGAGTT 57.069 34.783 0.00 0.00 42.42 3.01
1666 1705 5.514274 TGAAAGAACCCAACATTGAGTTC 57.486 39.130 10.15 10.15 43.59 3.01
1672 1711 5.660460 GAACCCAACATTGAGTTCTTTTGT 58.340 37.500 10.71 0.00 41.11 2.83
1673 1712 5.262588 ACCCAACATTGAGTTCTTTTGTC 57.737 39.130 0.00 0.00 38.74 3.18
1674 1713 4.709397 ACCCAACATTGAGTTCTTTTGTCA 59.291 37.500 0.00 0.00 38.74 3.58
1675 1714 5.186797 ACCCAACATTGAGTTCTTTTGTCAA 59.813 36.000 0.00 0.00 38.74 3.18
1676 1715 5.750067 CCCAACATTGAGTTCTTTTGTCAAG 59.250 40.000 0.00 0.00 38.74 3.02
1677 1716 5.750067 CCAACATTGAGTTCTTTTGTCAAGG 59.250 40.000 0.00 0.00 38.74 3.61
1678 1717 5.520376 ACATTGAGTTCTTTTGTCAAGGG 57.480 39.130 0.00 0.00 36.53 3.95
1679 1718 4.202151 ACATTGAGTTCTTTTGTCAAGGGC 60.202 41.667 0.00 0.00 36.53 5.19
1680 1719 3.011566 TGAGTTCTTTTGTCAAGGGCA 57.988 42.857 0.00 0.00 0.00 5.36
1681 1720 2.687935 TGAGTTCTTTTGTCAAGGGCAC 59.312 45.455 0.00 0.00 0.00 5.01
1682 1721 2.952310 GAGTTCTTTTGTCAAGGGCACT 59.048 45.455 0.00 0.00 0.00 4.40
1683 1722 4.134563 GAGTTCTTTTGTCAAGGGCACTA 58.865 43.478 0.00 0.00 0.00 2.74
1684 1723 4.532834 AGTTCTTTTGTCAAGGGCACTAA 58.467 39.130 0.00 0.00 0.00 2.24
1685 1724 4.953579 AGTTCTTTTGTCAAGGGCACTAAA 59.046 37.500 0.00 0.00 0.00 1.85
1686 1725 5.420739 AGTTCTTTTGTCAAGGGCACTAAAA 59.579 36.000 0.00 0.00 0.00 1.52
1687 1726 6.098266 AGTTCTTTTGTCAAGGGCACTAAAAT 59.902 34.615 0.00 0.00 0.00 1.82
1688 1727 5.841810 TCTTTTGTCAAGGGCACTAAAATG 58.158 37.500 0.00 0.00 0.00 2.32
1689 1728 3.658757 TTGTCAAGGGCACTAAAATGC 57.341 42.857 0.00 0.00 45.34 3.56
1733 1774 4.275838 TGCTTGCTTGTTGAATTTTTGC 57.724 36.364 0.00 0.00 0.00 3.68
1734 1775 3.688185 TGCTTGCTTGTTGAATTTTTGCA 59.312 34.783 0.00 0.00 0.00 4.08
1748 1789 5.938438 ATTTTTGCAAGTGTTGTGTTTGT 57.062 30.435 0.00 0.00 0.00 2.83
1756 1797 5.277058 GCAAGTGTTGTGTTTGTCTCTAGAG 60.277 44.000 13.98 13.98 0.00 2.43
1765 1806 8.974060 TGTGTTTGTCTCTAGAGGTAATTTTT 57.026 30.769 19.67 0.00 0.00 1.94
1791 1832 7.192913 TGTTCTGTGTACATTGTGATTTTGTC 58.807 34.615 0.00 0.00 0.00 3.18
2040 2089 5.303971 ACAAGGTGAGTGAATTCTTCTCAG 58.696 41.667 23.69 17.52 38.60 3.35
2046 2095 4.082517 TGAGTGAATTCTTCTCAGGACTCG 60.083 45.833 21.16 0.00 33.08 4.18
2193 2242 5.463392 CGATACACCAATCACAGAGGTTATG 59.537 44.000 0.00 0.00 32.15 1.90
2199 2248 6.878923 CACCAATCACAGAGGTTATGAACTTA 59.121 38.462 0.00 0.00 32.15 2.24
2221 2271 8.528643 ACTTAAACCCTTAAAGTAATCATTGGC 58.471 33.333 0.00 0.00 0.00 4.52
2249 2299 4.952262 TCATAAGCTGTCAGATTTGTGC 57.048 40.909 8.93 0.00 0.00 4.57
2265 2315 3.394674 TGTGCGATCAGTTTTGGAGTA 57.605 42.857 0.00 0.00 0.00 2.59
2579 2629 2.790433 TCATGCTGTGTTTAAGGGGAC 58.210 47.619 0.00 0.00 0.00 4.46
2588 2638 4.132336 GTGTTTAAGGGGACGGGAATATC 58.868 47.826 0.00 0.00 0.00 1.63
2592 2642 1.730851 AGGGGACGGGAATATCCTTC 58.269 55.000 0.00 0.00 36.57 3.46
2602 2652 5.823045 ACGGGAATATCCTTCTCAATTGTTC 59.177 40.000 5.13 0.00 36.57 3.18
2682 2735 9.396022 GGAACAGTATCATCCTTCTGAAAATTA 57.604 33.333 0.00 0.00 0.00 1.40
2795 3100 8.748380 GCAAGTGCAAGAGTAATAAAAATCTT 57.252 30.769 0.00 0.00 41.59 2.40
2876 3181 6.155221 AGACATAGTTCTTCCTTGTCTGCATA 59.845 38.462 3.28 0.00 43.88 3.14
2891 3196 9.486497 CTTGTCTGCATATTCACATATTACTCT 57.514 33.333 0.00 0.00 0.00 3.24
3021 3607 4.466567 TGTTGCACTCAGTTTGTATTCG 57.533 40.909 0.00 0.00 0.00 3.34
3046 3632 7.494625 CGGTTTGTACATAACTCTGTCCATAAT 59.505 37.037 15.66 0.00 0.00 1.28
3117 3704 6.875948 ACAACAACTGTGTATTGCATTAGA 57.124 33.333 0.00 0.00 36.80 2.10
3285 3872 0.463654 TGCTCAACACTCGCAGGTTT 60.464 50.000 0.00 0.00 0.00 3.27
3286 3873 0.040958 GCTCAACACTCGCAGGTTTG 60.041 55.000 0.00 0.00 0.00 2.93
3300 3887 4.610680 CGCAGGTTTGTGACTAAAGCTTAC 60.611 45.833 0.00 0.00 43.58 2.34
3347 3934 2.617308 CCATTAGCACTGCCTTCTCATG 59.383 50.000 0.00 0.00 0.00 3.07
3406 4007 2.887152 GAGCATGGCAAAACCCTATAGG 59.113 50.000 12.27 12.27 43.78 2.57
3450 4051 3.365264 CCATGTGTTGTTCGTCATCCTTG 60.365 47.826 0.00 0.00 0.00 3.61
3540 4141 8.211838 CACTATCAATAAATGCATTGAATTGCG 58.788 33.333 27.43 22.15 45.46 4.85
3574 4179 0.524862 GTGCTTCTGGTGCTTCATGG 59.475 55.000 0.00 0.00 0.00 3.66
3650 4255 6.046593 TCTATTTATGCAAGTAGTGGAACCG 58.953 40.000 0.00 0.00 37.80 4.44
3669 4274 9.461312 TGGAACCGTAGTAGTCTAATTTACTTA 57.539 33.333 0.00 0.00 32.64 2.24
3744 4349 3.777522 CAGGATTGAAGGTCCTAACTCCT 59.222 47.826 7.32 7.32 44.18 3.69
3969 4574 3.895232 TCTAGCTTCAGTGTCCCAATC 57.105 47.619 0.00 0.00 0.00 2.67
4015 4620 3.390311 AGTGGTCGGGAAGAGTTTAGTTT 59.610 43.478 0.00 0.00 0.00 2.66
4024 4629 6.293698 GGGAAGAGTTTAGTTTTGTCAGGTA 58.706 40.000 0.00 0.00 0.00 3.08
4058 4663 6.753744 GGATTGCCAGTAAGAGCTTATTTTTG 59.246 38.462 0.00 0.00 0.00 2.44
4073 4678 8.261522 AGCTTATTTTTGTTGGTTTCACCTTTA 58.738 29.630 0.00 0.00 39.58 1.85
4156 4764 2.290960 GGTTGGGTATGCTCTTCAGGTT 60.291 50.000 0.00 0.00 0.00 3.50
4192 4800 9.605275 AGTACTTTTAAGTAAACGGAAGAAGTT 57.395 29.630 4.03 0.00 42.66 2.66
4196 4804 6.535274 TTAAGTAAACGGAAGAAGTTGCTC 57.465 37.500 0.00 0.00 31.43 4.26
4208 4816 3.999663 AGAAGTTGCTCATAGCTGTGTTC 59.000 43.478 10.52 5.83 42.97 3.18
4219 4827 2.436417 AGCTGTGTTCACTTGTGTTGT 58.564 42.857 4.59 0.00 0.00 3.32
4220 4828 2.819608 AGCTGTGTTCACTTGTGTTGTT 59.180 40.909 4.59 0.00 0.00 2.83
4221 4829 2.916716 GCTGTGTTCACTTGTGTTGTTG 59.083 45.455 4.59 0.00 0.00 3.33
4271 4879 9.840427 ATTCGTTAGTGAAATTTGACCAAATAG 57.160 29.630 4.01 0.12 39.88 1.73
4365 4975 5.761234 GGTTGTGTAATAGTGTCACCTTGAA 59.239 40.000 0.00 0.00 0.00 2.69
4410 5020 0.321346 CCCTGCAAAATTGTCCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
4412 5022 1.693606 CCTGCAAAATTGTCCCCACTT 59.306 47.619 0.00 0.00 0.00 3.16
4423 5033 0.476771 TCCCCACTTGTCCCTTTCAC 59.523 55.000 0.00 0.00 0.00 3.18
4579 5206 9.362151 ACTTCCACCTTAAGAAATAACAATTGA 57.638 29.630 13.59 0.00 0.00 2.57
4604 5231 1.117749 TGCTGCAGTCTCAGTCCAGT 61.118 55.000 16.64 0.00 36.49 4.00
4610 5237 3.056536 TGCAGTCTCAGTCCAGTCAATAC 60.057 47.826 0.00 0.00 0.00 1.89
4618 5245 2.906389 AGTCCAGTCAATACCAGCAAGA 59.094 45.455 0.00 0.00 0.00 3.02
4708 6858 5.535030 GGGTGACTTCTGACCAAGTTAATTT 59.465 40.000 0.00 0.00 36.71 1.82
4758 6908 6.207614 GGGCTTCCAGAGTTTGAATAATATCC 59.792 42.308 0.00 0.00 0.00 2.59
4804 6954 2.492484 ACATTCAGGACCTACACGTCTC 59.508 50.000 0.00 0.00 33.07 3.36
4818 6968 3.064958 ACACGTCTCGTATGTCTACATGG 59.935 47.826 5.85 0.00 38.32 3.66
4830 6981 8.082242 CGTATGTCTACATGGAGTGAATGATAA 58.918 37.037 4.45 0.00 37.15 1.75
4831 6982 9.764363 GTATGTCTACATGGAGTGAATGATAAA 57.236 33.333 4.45 0.00 37.15 1.40
4883 7034 6.742109 ACTGTCAAAACAATTCAGGATTCAG 58.258 36.000 0.00 0.00 34.24 3.02
4926 7077 5.714047 TGAGAATCCTACGATATGTCATGC 58.286 41.667 0.00 0.00 0.00 4.06
4949 7100 5.572511 GCTTCGAAATTAACACATTCATGCA 59.427 36.000 0.00 0.00 0.00 3.96
5087 7238 1.630244 GCTGTAGCTCAGTGCCAACG 61.630 60.000 12.71 0.00 45.23 4.10
5285 7437 6.784969 AGAAGGTCCTGCATGTTAGACTATAT 59.215 38.462 0.00 0.00 0.00 0.86
5335 7487 0.391130 TGGTCAAGGCTGTACGCATC 60.391 55.000 10.92 0.00 41.67 3.91
5338 7490 1.328680 GTCAAGGCTGTACGCATCATG 59.671 52.381 10.92 0.00 41.67 3.07
5385 7537 6.985117 TGTTGAGCAAAAGAGCTAATCAAAT 58.015 32.000 0.00 0.00 46.75 2.32
5423 7575 6.893020 ATAGGCTACCCCCTTCTAATAATG 57.107 41.667 0.00 0.00 36.41 1.90
5464 7616 3.966665 AGAGAAGTTCAAAATTGGGCCAA 59.033 39.130 23.33 23.33 0.00 4.52
5616 7787 4.937620 GGTTACATTCTCATGCTCAGTCAA 59.062 41.667 0.00 0.00 33.05 3.18
5626 7797 1.536766 TGCTCAGTCAATTTTCAGGCG 59.463 47.619 0.00 0.00 0.00 5.52
5676 7847 5.069914 TCAGTGCTGAGGTAGTTACTTTTCA 59.930 40.000 0.00 0.00 34.14 2.69
5713 7885 7.600960 TGTAGTACAATTATGTGACCAACGTA 58.399 34.615 0.00 0.00 40.84 3.57
5720 7892 8.838365 ACAATTATGTGACCAACGTACTTTTTA 58.162 29.630 0.00 0.00 38.69 1.52
5905 8087 4.081365 TGGTGCTGAAATATGGTTCGTCTA 60.081 41.667 0.00 0.00 0.00 2.59
5956 8158 5.940470 GTGTTGGGTTCTCAGATGTATCTTT 59.060 40.000 0.00 0.00 34.22 2.52
6084 8286 1.344953 TGGCAGTTCCACAGGTCTGT 61.345 55.000 0.00 0.00 46.17 3.41
6108 8310 6.147864 ACTTGCTGCTTCTTTTACATTGAA 57.852 33.333 0.00 0.00 0.00 2.69
6116 8318 6.127196 TGCTTCTTTTACATTGAACCCAAACT 60.127 34.615 0.00 0.00 35.67 2.66
6189 8392 9.270576 CGATAATAGCATAGCATTTTTCATGAC 57.729 33.333 0.00 0.00 0.00 3.06
6207 8410 7.603180 TCATGACTAGTACTGGAAATAGCAT 57.397 36.000 13.86 3.32 0.00 3.79
6333 8536 5.862924 CCAGTATTATTGATTGGCTACCG 57.137 43.478 0.00 0.00 0.00 4.02
6371 8608 0.738389 ACTGCCTTGTGTTGGTTTCG 59.262 50.000 0.00 0.00 0.00 3.46
6389 8626 6.094325 TGGTTTCGTACTTTTTCATTGTCAGT 59.906 34.615 0.00 0.00 0.00 3.41
6391 8628 5.090652 TCGTACTTTTTCATTGTCAGTGC 57.909 39.130 0.00 0.00 0.00 4.40
6441 8678 4.330944 TCATATGTACTGTTAAGCCGGG 57.669 45.455 2.18 0.00 0.00 5.73
6468 8705 0.982852 TAGTGGGGCATCAGTGAGGG 60.983 60.000 6.95 0.00 0.00 4.30
6480 8717 5.644644 CATCAGTGAGGGAATAGTTTTTGC 58.355 41.667 0.00 0.00 0.00 3.68
6484 8721 6.323739 TCAGTGAGGGAATAGTTTTTGCTTTT 59.676 34.615 0.00 0.00 0.00 2.27
6552 9153 9.856488 CTAATAGCTCGTAAAATATGAAGGCTA 57.144 33.333 0.00 0.00 34.23 3.93
6598 9199 6.485830 TTCCTAGTGGGTAATGAATGAGAG 57.514 41.667 0.00 0.00 36.25 3.20
6606 9207 4.507710 GGTAATGAATGAGAGTGCAGTGA 58.492 43.478 0.00 0.00 0.00 3.41
6607 9208 4.331168 GGTAATGAATGAGAGTGCAGTGAC 59.669 45.833 0.00 0.00 0.00 3.67
6608 9209 2.070262 TGAATGAGAGTGCAGTGACG 57.930 50.000 0.00 0.00 0.00 4.35
6609 9210 1.613437 TGAATGAGAGTGCAGTGACGA 59.387 47.619 0.00 0.00 0.00 4.20
6610 9211 2.035832 TGAATGAGAGTGCAGTGACGAA 59.964 45.455 0.00 0.00 0.00 3.85
6630 9235 7.008810 TGACGAAACAACAATTTCTTTTGTAGC 59.991 33.333 0.00 0.00 38.85 3.58
6652 9257 2.656560 GAGTATCTGTCACCAGCGTT 57.343 50.000 0.00 0.00 38.66 4.84
6698 9303 2.795329 AGGTTGGGCATTAGACAGTTG 58.205 47.619 0.00 0.00 0.00 3.16
6713 9318 8.988064 TTAGACAGTTGATATGTTTCAGAGAC 57.012 34.615 0.00 0.00 0.00 3.36
6724 9329 1.769026 TTCAGAGACAGGATCCTCCG 58.231 55.000 12.69 4.12 42.75 4.63
6741 9346 5.701224 TCCTCCGCCCATATTTTTAATCTT 58.299 37.500 0.00 0.00 0.00 2.40
6811 9416 3.788142 AGATTATGTTGGACATGGGGAGT 59.212 43.478 0.00 0.00 39.53 3.85
6824 9429 3.053831 TGGGGAGTCGATTCTTCAAAC 57.946 47.619 7.92 0.00 0.00 2.93
6833 9438 6.444633 AGTCGATTCTTCAAACGTTTCTAGA 58.555 36.000 11.37 13.31 0.00 2.43
6887 9492 9.507329 AAGGTGGCTATATAGTATGTTGAATTG 57.493 33.333 11.38 0.00 0.00 2.32
6891 9496 9.710900 TGGCTATATAGTATGTTGAATTGTCTG 57.289 33.333 11.38 0.00 0.00 3.51
6892 9497 9.929180 GGCTATATAGTATGTTGAATTGTCTGA 57.071 33.333 11.38 0.00 0.00 3.27
6928 9533 4.039973 CCTACATATTAAGGCCTCCGTTGA 59.960 45.833 5.23 0.00 0.00 3.18
6971 9618 6.846505 TCACAGGAATAGGGAAGTCATATTCT 59.153 38.462 9.30 0.00 36.56 2.40
7005 9655 4.225942 ACTCAGGTTCAGCCAATCATCTTA 59.774 41.667 0.00 0.00 40.61 2.10
7007 9657 3.881688 CAGGTTCAGCCAATCATCTTAGG 59.118 47.826 0.00 0.00 40.61 2.69
7012 9662 5.798125 TCAGCCAATCATCTTAGGAGTAG 57.202 43.478 0.00 0.00 0.00 2.57
7043 9693 9.962783 GTGATATTAGACGTAGGTTGAAGTATT 57.037 33.333 0.00 0.00 0.00 1.89
7122 9774 2.140717 CCTCGCCTCACTAACGTTTTT 58.859 47.619 5.91 0.00 0.00 1.94
7185 9837 3.429207 CGAGCTTGCTACAGATCATCATG 59.571 47.826 0.00 0.00 0.00 3.07
7186 9838 4.629092 GAGCTTGCTACAGATCATCATGA 58.371 43.478 0.00 0.00 0.00 3.07
7197 9849 0.740149 TCATCATGAATGGCGGCAAC 59.260 50.000 18.31 14.08 35.94 4.17
7266 9921 5.825593 TCCTTGTCCAGAAAAGATGTACT 57.174 39.130 0.00 0.00 0.00 2.73
7294 9949 4.729868 GCATAATTGTATCCCCCAACTCT 58.270 43.478 0.00 0.00 0.00 3.24
7335 9990 2.826725 TCTGCATGCATTGTTGATTCCA 59.173 40.909 22.97 0.00 0.00 3.53
7383 10038 3.698040 GCATTCAGTTCATGGTTCATCCT 59.302 43.478 0.00 0.00 37.07 3.24
7387 10042 3.054875 TCAGTTCATGGTTCATCCTGAGG 60.055 47.826 0.00 0.00 37.07 3.86
7389 10044 0.178767 TCATGGTTCATCCTGAGGCG 59.821 55.000 0.00 0.00 37.07 5.52
7398 10053 1.328680 CATCCTGAGGCGTTTGAATCG 59.671 52.381 0.00 0.00 0.00 3.34
7473 10233 6.926826 TGTAACTGAATTACAGACGTTCACAT 59.073 34.615 10.61 0.00 46.68 3.21
7483 10243 3.910170 CAGACGTTCACATGATTTTGCTG 59.090 43.478 0.00 0.00 0.00 4.41
7486 10246 2.981805 CGTTCACATGATTTTGCTGTGG 59.018 45.455 0.00 0.00 40.47 4.17
7490 10250 3.825585 TCACATGATTTTGCTGTGGCTTA 59.174 39.130 0.00 0.00 40.47 3.09
7525 10285 3.068165 AGTGTGATCAATATCGCGGAGAA 59.932 43.478 6.13 0.00 44.15 2.87
7531 10291 3.194861 TCAATATCGCGGAGAAAACTGG 58.805 45.455 6.13 0.00 0.00 4.00
7544 10304 5.406477 GGAGAAAACTGGAACATTGAAATGC 59.594 40.000 2.92 0.00 40.04 3.56
7550 10310 3.509442 TGGAACATTGAAATGCTTCCCT 58.491 40.909 21.55 0.00 41.12 4.20
7551 10311 3.903090 TGGAACATTGAAATGCTTCCCTT 59.097 39.130 21.55 5.15 41.12 3.95
7554 10314 4.725790 ACATTGAAATGCTTCCCTTAGC 57.274 40.909 2.92 0.00 40.04 3.09
7556 10316 2.489938 TGAAATGCTTCCCTTAGCGT 57.510 45.000 0.00 0.00 44.18 5.07
7560 10320 2.200373 ATGCTTCCCTTAGCGTTTGT 57.800 45.000 0.00 0.00 44.18 2.83
7561 10321 1.975660 TGCTTCCCTTAGCGTTTGTT 58.024 45.000 0.00 0.00 44.18 2.83
7564 10324 2.034179 GCTTCCCTTAGCGTTTGTTTGT 59.966 45.455 0.00 0.00 0.00 2.83
7566 10326 4.261280 GCTTCCCTTAGCGTTTGTTTGTTA 60.261 41.667 0.00 0.00 0.00 2.41
7567 10327 5.733937 GCTTCCCTTAGCGTTTGTTTGTTAA 60.734 40.000 0.00 0.00 0.00 2.01
7568 10328 5.172460 TCCCTTAGCGTTTGTTTGTTAAC 57.828 39.130 0.00 0.00 34.75 2.01
7569 10329 4.883006 TCCCTTAGCGTTTGTTTGTTAACT 59.117 37.500 7.22 0.00 35.24 2.24
7570 10330 5.007921 TCCCTTAGCGTTTGTTTGTTAACTC 59.992 40.000 7.22 0.00 35.24 3.01
7573 10333 4.688511 AGCGTTTGTTTGTTAACTCACA 57.311 36.364 7.22 6.74 35.24 3.58
7575 10335 3.236528 GCGTTTGTTTGTTAACTCACACG 59.763 43.478 21.06 21.06 35.24 4.49
7576 10336 4.396519 CGTTTGTTTGTTAACTCACACGT 58.603 39.130 19.06 0.00 35.24 4.49
7577 10337 4.258817 CGTTTGTTTGTTAACTCACACGTG 59.741 41.667 15.48 15.48 35.24 4.49
7578 10338 5.148568 GTTTGTTTGTTAACTCACACGTGT 58.851 37.500 17.22 17.22 35.24 4.49
7579 10339 6.305639 GTTTGTTTGTTAACTCACACGTGTA 58.694 36.000 22.90 9.14 35.24 2.90
7580 10340 6.665474 TTGTTTGTTAACTCACACGTGTAT 57.335 33.333 22.90 10.54 35.24 2.29
7581 10341 6.038601 TGTTTGTTAACTCACACGTGTATG 57.961 37.500 22.90 18.51 35.24 2.39
7590 10361 4.173256 CTCACACGTGTATGCATACTTGA 58.827 43.478 31.35 23.04 34.41 3.02
7592 10363 3.926527 CACACGTGTATGCATACTTGAGT 59.073 43.478 31.35 24.25 34.41 3.41
7602 10373 4.082125 TGCATACTTGAGTCTGAGAGTGA 58.918 43.478 0.00 0.00 0.00 3.41
7603 10374 4.082517 TGCATACTTGAGTCTGAGAGTGAC 60.083 45.833 0.00 0.00 34.88 3.67
7606 10377 2.625790 ACTTGAGTCTGAGAGTGACACC 59.374 50.000 0.84 0.00 36.94 4.16
7613 10384 0.760567 TGAGAGTGACACCTGTGGCT 60.761 55.000 4.52 0.00 39.96 4.75
7628 10399 4.310672 GCTGACGCCTAGATGTCG 57.689 61.111 9.01 6.07 37.94 4.35
7629 10400 1.946650 GCTGACGCCTAGATGTCGC 60.947 63.158 9.01 10.56 37.94 5.19
7630 10401 1.730487 CTGACGCCTAGATGTCGCT 59.270 57.895 9.01 0.00 37.94 4.93
7631 10402 0.317436 CTGACGCCTAGATGTCGCTC 60.317 60.000 9.01 0.00 37.94 5.03
7633 10404 0.312416 GACGCCTAGATGTCGCTCAT 59.688 55.000 0.00 0.00 39.77 2.90
7634 10405 0.031314 ACGCCTAGATGTCGCTCATG 59.969 55.000 0.00 0.00 36.83 3.07
7635 10406 0.312102 CGCCTAGATGTCGCTCATGA 59.688 55.000 0.00 0.00 36.83 3.07
7636 10407 1.067985 CGCCTAGATGTCGCTCATGAT 60.068 52.381 0.00 0.00 36.83 2.45
7637 10408 2.335752 GCCTAGATGTCGCTCATGATG 58.664 52.381 0.00 0.00 36.83 3.07
7638 10409 2.288702 GCCTAGATGTCGCTCATGATGT 60.289 50.000 0.00 0.00 36.83 3.06
7639 10410 3.315418 CCTAGATGTCGCTCATGATGTG 58.685 50.000 0.00 0.00 36.83 3.21
7640 10411 2.975732 AGATGTCGCTCATGATGTGT 57.024 45.000 0.00 0.00 36.83 3.72
7641 10412 2.819115 AGATGTCGCTCATGATGTGTC 58.181 47.619 0.00 0.00 36.83 3.67
7652 10423 0.900421 TGATGTGTCAGGGCTGAGAG 59.100 55.000 0.00 0.00 40.75 3.20
7683 10461 2.650116 GGCGAGGCAGTCTCCAAGA 61.650 63.158 0.00 0.00 39.30 3.02
7715 10504 0.310854 CGGAAAGCAACAGGTGGAAC 59.689 55.000 0.00 0.00 0.00 3.62
7716 10505 0.310854 GGAAAGCAACAGGTGGAACG 59.689 55.000 0.00 0.00 38.12 3.95
7717 10506 0.317854 GAAAGCAACAGGTGGAACGC 60.318 55.000 0.00 0.00 38.12 4.84
7723 10518 4.308458 CAGGTGGAACGCGACCCA 62.308 66.667 15.93 16.92 43.29 4.51
7759 10554 0.518636 CACATGTGGAGCAACTTCCG 59.481 55.000 18.51 0.00 40.27 4.30
7760 10555 0.108585 ACATGTGGAGCAACTTCCGT 59.891 50.000 0.00 0.00 40.27 4.69
7761 10556 1.238439 CATGTGGAGCAACTTCCGTT 58.762 50.000 0.00 0.00 40.27 4.44
7769 10564 1.654220 CAACTTCCGTTGCTGTGGG 59.346 57.895 0.00 0.00 43.47 4.61
7770 10565 1.528309 AACTTCCGTTGCTGTGGGG 60.528 57.895 0.00 0.00 30.67 4.96
7771 10566 2.113139 CTTCCGTTGCTGTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
7772 10567 1.528309 CTTCCGTTGCTGTGGGGTT 60.528 57.895 0.00 0.00 0.00 4.11
7773 10568 1.795170 CTTCCGTTGCTGTGGGGTTG 61.795 60.000 0.00 0.00 0.00 3.77
7774 10569 2.518349 CCGTTGCTGTGGGGTTGT 60.518 61.111 0.00 0.00 0.00 3.32
7775 10570 2.721231 CGTTGCTGTGGGGTTGTG 59.279 61.111 0.00 0.00 0.00 3.33
7803 10598 4.868172 TCATGGACCATGATTCTTCCTT 57.132 40.909 29.67 0.00 44.60 3.36
7804 10599 4.785301 TCATGGACCATGATTCTTCCTTC 58.215 43.478 29.67 0.00 44.60 3.46
7805 10600 4.227982 TCATGGACCATGATTCTTCCTTCA 59.772 41.667 29.67 6.53 44.60 3.02
7817 10612 4.273148 TCTTCCTTCAGCTGGAAACTAC 57.727 45.455 15.13 0.00 42.29 2.73
7829 10629 2.156098 GGAAACTACCGAATTGTGGCA 58.844 47.619 0.00 0.00 0.00 4.92
7895 10695 6.607600 TGTAGATAATATCATTCCCGCTAGCT 59.392 38.462 13.93 0.00 0.00 3.32
7916 10716 1.200716 CATCATTGGTGTGTGGTGCTC 59.799 52.381 0.00 0.00 0.00 4.26
7927 10727 2.202987 GGTGCTCTGGATCAGGCG 60.203 66.667 0.00 0.00 32.91 5.52
7929 10729 3.079478 TGCTCTGGATCAGGCGCT 61.079 61.111 7.64 0.00 32.91 5.92
8067 10872 5.059833 GGTCCATTGAGCCTTCTATTGTAG 58.940 45.833 0.00 0.00 32.76 2.74
8120 10925 0.528684 GCAGTCCATCGCTCAGGTAC 60.529 60.000 0.00 0.00 0.00 3.34
8181 10987 4.945246 AGAAAAAGATGATGCATCATGGC 58.055 39.130 39.76 27.71 46.84 4.40
8182 10988 4.404394 AGAAAAAGATGATGCATCATGGCA 59.596 37.500 39.76 16.61 46.84 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.579047 TGTTTGGGACATGGAAATCATAGT 58.421 37.500 0.00 0.00 39.30 2.12
46 47 5.726980 AAAATCTTGCAAGTCTTATGCCA 57.273 34.783 25.19 3.73 43.16 4.92
84 86 9.412460 GAATATGGAATATGGAATTGGCATAGA 57.588 33.333 0.00 0.00 38.94 1.98
85 87 9.192642 TGAATATGGAATATGGAATTGGCATAG 57.807 33.333 0.00 0.00 38.94 2.23
108 110 9.481340 GTGATCTGAATGCACTAGTATTATGAA 57.519 33.333 0.00 0.00 29.73 2.57
109 111 8.090831 GGTGATCTGAATGCACTAGTATTATGA 58.909 37.037 0.00 0.00 29.73 2.15
116 118 4.558226 TTGGTGATCTGAATGCACTAGT 57.442 40.909 0.00 0.00 33.25 2.57
117 119 5.181811 TGTTTTGGTGATCTGAATGCACTAG 59.818 40.000 0.00 0.00 33.25 2.57
125 127 6.367422 GTGTGTTTTTGTTTTGGTGATCTGAA 59.633 34.615 0.00 0.00 0.00 3.02
144 146 1.401552 GAGTGTGCATGTGTGTGTGTT 59.598 47.619 0.00 0.00 0.00 3.32
148 150 1.198408 GGATGAGTGTGCATGTGTGTG 59.802 52.381 0.00 0.00 0.00 3.82
149 151 1.072806 AGGATGAGTGTGCATGTGTGT 59.927 47.619 0.00 0.00 0.00 3.72
151 153 3.538591 CATAGGATGAGTGTGCATGTGT 58.461 45.455 0.00 0.00 0.00 3.72
168 178 1.121407 TCGGGTCCATGCCTCCATAG 61.121 60.000 0.00 0.00 0.00 2.23
242 252 7.385778 TCTGAATTTATTTTAGGTTGTCCGG 57.614 36.000 0.00 0.00 39.05 5.14
262 272 6.489700 TGGCAAGAGTAATCACATTTTTCTGA 59.510 34.615 0.00 0.00 0.00 3.27
272 282 5.808030 GTCTAGACTTGGCAAGAGTAATCAC 59.192 44.000 32.50 15.26 0.00 3.06
273 283 5.105310 GGTCTAGACTTGGCAAGAGTAATCA 60.105 44.000 32.50 7.93 0.00 2.57
294 304 3.718815 GTGTCTATCCGGATTCAAGGTC 58.281 50.000 24.71 11.16 0.00 3.85
322 332 3.648067 TCTAATGGCTAGATCCCTTGTGG 59.352 47.826 0.00 0.00 31.28 4.17
390 400 9.643693 AGGTTTGAAATTTTATGACATGATGAC 57.356 29.630 0.00 0.00 0.00 3.06
407 417 7.124448 AGTTGTGGGTTGTATTTAGGTTTGAAA 59.876 33.333 0.00 0.00 0.00 2.69
414 424 9.675464 TTATAGAAGTTGTGGGTTGTATTTAGG 57.325 33.333 0.00 0.00 0.00 2.69
459 469 9.461312 TGATTTTGTAATATCAGTAGCTTGGTT 57.539 29.630 0.00 0.00 0.00 3.67
460 470 9.461312 TTGATTTTGTAATATCAGTAGCTTGGT 57.539 29.630 0.00 0.00 32.76 3.67
491 501 1.601171 GGCTCAGTCACTGCCTCAT 59.399 57.895 0.00 0.00 43.05 2.90
496 506 2.359230 GTGGGGCTCAGTCACTGC 60.359 66.667 0.00 0.00 0.00 4.40
497 507 1.845627 ATGGTGGGGCTCAGTCACTG 61.846 60.000 0.00 0.00 0.00 3.66
498 508 1.539869 ATGGTGGGGCTCAGTCACT 60.540 57.895 0.00 0.00 0.00 3.41
499 509 1.377725 CATGGTGGGGCTCAGTCAC 60.378 63.158 0.00 0.00 0.00 3.67
500 510 1.847506 ACATGGTGGGGCTCAGTCA 60.848 57.895 0.00 0.00 0.00 3.41
501 511 1.377725 CACATGGTGGGGCTCAGTC 60.378 63.158 0.00 0.00 0.00 3.51
502 512 2.759114 CACATGGTGGGGCTCAGT 59.241 61.111 0.00 0.00 0.00 3.41
503 513 2.753043 GCACATGGTGGGGCTCAG 60.753 66.667 0.00 0.00 33.64 3.35
504 514 2.842188 GATGCACATGGTGGGGCTCA 62.842 60.000 0.00 0.00 33.64 4.26
543 553 9.308000 TGCAAATTAAATAAAGAGGGAAGAAGA 57.692 29.630 0.00 0.00 0.00 2.87
544 554 9.358872 GTGCAAATTAAATAAAGAGGGAAGAAG 57.641 33.333 0.00 0.00 0.00 2.85
546 556 8.650143 AGTGCAAATTAAATAAAGAGGGAAGA 57.350 30.769 0.00 0.00 0.00 2.87
547 557 9.710900 AAAGTGCAAATTAAATAAAGAGGGAAG 57.289 29.630 0.00 0.00 0.00 3.46
580 590 3.131933 GGGAGCATATGATCTATGACGCT 59.868 47.826 19.70 0.00 0.00 5.07
583 593 7.652524 TCTAAGGGAGCATATGATCTATGAC 57.347 40.000 19.70 3.52 0.00 3.06
727 737 6.987992 GGAAGTTCGGTATTGAATGTATGGTA 59.012 38.462 0.00 0.00 0.00 3.25
730 742 6.074302 CGAGGAAGTTCGGTATTGAATGTATG 60.074 42.308 0.00 0.00 36.95 2.39
777 789 2.732282 GCCTGCGTTTATCTCCTTTTGC 60.732 50.000 0.00 0.00 0.00 3.68
894 914 2.028020 TCCGCCTTTTGTTTGTTTGGTT 60.028 40.909 0.00 0.00 0.00 3.67
948 968 1.697284 GATTGGGAGGGGAGATTTGC 58.303 55.000 0.00 0.00 0.00 3.68
1055 1078 4.135153 CAGGCACGGACGGAGGAG 62.135 72.222 0.00 0.00 0.00 3.69
1066 1089 2.024414 AGAGACAAAACCAACAGGCAC 58.976 47.619 0.00 0.00 0.00 5.01
1074 1097 2.766313 CACGGATCAGAGACAAAACCA 58.234 47.619 0.00 0.00 0.00 3.67
1108 1131 4.284550 GCCCCAGCACCTGAACCA 62.285 66.667 0.00 0.00 39.53 3.67
1299 1326 1.423541 AGCTGTACCATTCACCACCAA 59.576 47.619 0.00 0.00 0.00 3.67
1300 1327 1.064003 AGCTGTACCATTCACCACCA 58.936 50.000 0.00 0.00 0.00 4.17
1350 1378 3.936203 GCGACCACCCCTGTCACA 61.936 66.667 0.00 0.00 32.91 3.58
1351 1379 2.951475 TTTGCGACCACCCCTGTCAC 62.951 60.000 0.00 0.00 32.91 3.67
1352 1380 2.063015 ATTTGCGACCACCCCTGTCA 62.063 55.000 0.00 0.00 32.91 3.58
1353 1381 0.893727 AATTTGCGACCACCCCTGTC 60.894 55.000 0.00 0.00 0.00 3.51
1354 1382 1.152830 AATTTGCGACCACCCCTGT 59.847 52.632 0.00 0.00 0.00 4.00
1365 1401 0.458889 CCATGACTGGCCAATTTGCG 60.459 55.000 7.01 0.00 35.23 4.85
1369 1405 4.039042 GCCCATGACTGGCCAATT 57.961 55.556 7.01 0.00 43.33 2.32
1394 1430 2.048444 TACAATCGACGCCCTCTAGT 57.952 50.000 0.00 0.00 0.00 2.57
1395 1431 2.351835 CCATACAATCGACGCCCTCTAG 60.352 54.545 0.00 0.00 0.00 2.43
1398 1434 0.387929 TCCATACAATCGACGCCCTC 59.612 55.000 0.00 0.00 0.00 4.30
1426 1462 1.569479 GAACTGAGCTGCACGAACCC 61.569 60.000 1.02 0.00 0.00 4.11
1428 1464 0.510359 CAGAACTGAGCTGCACGAAC 59.490 55.000 1.02 0.00 0.00 3.95
1431 1467 0.601046 TTCCAGAACTGAGCTGCACG 60.601 55.000 1.02 0.00 32.06 5.34
1452 1488 1.489481 TCTCCTGAGCGATCAACCAT 58.511 50.000 4.32 0.00 0.00 3.55
1453 1489 1.266178 TTCTCCTGAGCGATCAACCA 58.734 50.000 4.32 0.00 0.00 3.67
1455 1491 3.122297 CTGATTCTCCTGAGCGATCAAC 58.878 50.000 4.32 0.00 33.54 3.18
1457 1493 2.360483 GACTGATTCTCCTGAGCGATCA 59.640 50.000 2.19 2.19 33.18 2.92
1459 1495 1.336440 CGACTGATTCTCCTGAGCGAT 59.664 52.381 0.00 0.00 0.00 4.58
1460 1496 0.735471 CGACTGATTCTCCTGAGCGA 59.265 55.000 0.00 0.00 0.00 4.93
1461 1497 0.453793 ACGACTGATTCTCCTGAGCG 59.546 55.000 0.00 0.00 0.00 5.03
1462 1498 2.663826 AACGACTGATTCTCCTGAGC 57.336 50.000 0.00 0.00 0.00 4.26
1463 1499 4.752101 ACAAAAACGACTGATTCTCCTGAG 59.248 41.667 0.00 0.00 0.00 3.35
1519 1556 0.539438 TGAAACCATGGCCTCACACC 60.539 55.000 13.04 0.00 0.00 4.16
1523 1560 0.770499 TCACTGAAACCATGGCCTCA 59.230 50.000 13.04 13.69 0.00 3.86
1526 1563 2.562298 TCAATTCACTGAAACCATGGCC 59.438 45.455 13.04 0.00 0.00 5.36
1528 1565 4.229096 CGTTCAATTCACTGAAACCATGG 58.771 43.478 11.19 11.19 37.08 3.66
1534 1572 5.120399 ACAGTACCGTTCAATTCACTGAAA 58.880 37.500 6.54 0.00 37.08 2.69
1594 1633 1.066573 CCTCTACACCAGCTGTCCAAG 60.067 57.143 13.81 5.07 33.91 3.61
1595 1634 0.976641 CCTCTACACCAGCTGTCCAA 59.023 55.000 13.81 0.00 33.91 3.53
1619 1658 2.226330 TGTGAAATCAGAACAACCCCG 58.774 47.619 0.00 0.00 0.00 5.73
1620 1659 3.888930 TCTTGTGAAATCAGAACAACCCC 59.111 43.478 0.00 0.00 30.93 4.95
1621 1660 5.712152 ATCTTGTGAAATCAGAACAACCC 57.288 39.130 0.00 0.00 30.93 4.11
1639 1678 6.324770 ACTCAATGTTGGGTTCTTTCAATCTT 59.675 34.615 0.00 0.00 39.25 2.40
1660 1699 2.687935 GTGCCCTTGACAAAAGAACTCA 59.312 45.455 0.00 0.00 0.00 3.41
1661 1700 2.952310 AGTGCCCTTGACAAAAGAACTC 59.048 45.455 0.00 0.00 0.00 3.01
1663 1702 4.911514 TTAGTGCCCTTGACAAAAGAAC 57.088 40.909 0.00 0.00 0.00 3.01
1664 1703 5.923733 TTTTAGTGCCCTTGACAAAAGAA 57.076 34.783 0.00 0.00 0.00 2.52
1665 1704 5.738783 GCATTTTAGTGCCCTTGACAAAAGA 60.739 40.000 0.00 0.00 39.18 2.52
1666 1705 4.448732 GCATTTTAGTGCCCTTGACAAAAG 59.551 41.667 0.00 0.00 39.18 2.27
1667 1706 4.141846 TGCATTTTAGTGCCCTTGACAAAA 60.142 37.500 0.00 0.00 44.43 2.44
1668 1707 3.386078 TGCATTTTAGTGCCCTTGACAAA 59.614 39.130 0.00 0.00 44.43 2.83
1669 1708 2.961741 TGCATTTTAGTGCCCTTGACAA 59.038 40.909 0.00 0.00 44.43 3.18
1670 1709 2.591923 TGCATTTTAGTGCCCTTGACA 58.408 42.857 0.00 0.00 44.43 3.58
1671 1710 3.445096 AGATGCATTTTAGTGCCCTTGAC 59.555 43.478 0.00 0.00 44.43 3.18
1672 1711 3.696051 GAGATGCATTTTAGTGCCCTTGA 59.304 43.478 0.00 0.00 44.43 3.02
1673 1712 3.698040 AGAGATGCATTTTAGTGCCCTTG 59.302 43.478 0.00 0.00 44.43 3.61
1674 1713 3.973425 AGAGATGCATTTTAGTGCCCTT 58.027 40.909 0.00 0.00 44.43 3.95
1675 1714 3.659183 AGAGATGCATTTTAGTGCCCT 57.341 42.857 0.00 0.00 44.43 5.19
1676 1715 6.396829 AATAAGAGATGCATTTTAGTGCCC 57.603 37.500 0.00 0.00 44.43 5.36
1677 1716 8.159344 ACTAATAAGAGATGCATTTTAGTGCC 57.841 34.615 0.00 0.00 44.43 5.01
1733 1774 5.235186 CCTCTAGAGACAAACACAACACTTG 59.765 44.000 21.76 0.00 0.00 3.16
1734 1775 5.104900 ACCTCTAGAGACAAACACAACACTT 60.105 40.000 21.76 0.00 0.00 3.16
1765 1806 7.542890 ACAAAATCACAATGTACACAGAACAA 58.457 30.769 0.00 0.00 0.00 2.83
1773 1814 5.380900 TCCCAGACAAAATCACAATGTACA 58.619 37.500 0.00 0.00 0.00 2.90
1774 1815 5.957842 TCCCAGACAAAATCACAATGTAC 57.042 39.130 0.00 0.00 0.00 2.90
1791 1832 4.530875 AGAGGACTGCATAAATTTCCCAG 58.469 43.478 0.00 2.70 0.00 4.45
1965 2014 8.037758 CCACAGAAATGACAAGAGTATTAGAGT 58.962 37.037 0.00 0.00 0.00 3.24
1976 2025 2.233271 ACCTGCCACAGAAATGACAAG 58.767 47.619 0.00 0.00 32.44 3.16
1977 2026 2.361757 CAACCTGCCACAGAAATGACAA 59.638 45.455 0.00 0.00 32.44 3.18
2040 2089 7.275123 ACGAAGTAATAAAGAAATCACGAGTCC 59.725 37.037 0.00 0.00 41.94 3.85
2046 2095 6.837992 TGCCACGAAGTAATAAAGAAATCAC 58.162 36.000 0.00 0.00 41.61 3.06
2199 2248 5.479027 ACGCCAATGATTACTTTAAGGGTTT 59.521 36.000 0.00 0.00 0.00 3.27
2221 2271 3.838120 TCTGACAGCTTATGAACAGACG 58.162 45.455 0.00 0.00 39.18 4.18
2249 2299 7.036220 AGTACTGAATACTCCAAAACTGATCG 58.964 38.462 0.00 0.00 40.31 3.69
2283 2333 2.435372 ACCAGCCTGAACAGAACAAA 57.565 45.000 3.19 0.00 0.00 2.83
2416 2466 3.915437 AGGTTATTTGACAAACTGGCG 57.085 42.857 1.94 0.00 0.00 5.69
2579 2629 6.058183 AGAACAATTGAGAAGGATATTCCCG 58.942 40.000 13.59 0.00 37.19 5.14
2623 2676 8.379457 ACTTTCCAATGTCAGTTTCTAGTAAC 57.621 34.615 4.17 4.17 0.00 2.50
2682 2735 9.902684 AAGAAAATGTAGTGATCTTGATCATCT 57.097 29.630 15.23 15.01 32.61 2.90
2695 2748 6.710744 ACTACCAACAGGAAGAAAATGTAGTG 59.289 38.462 0.00 0.00 36.11 2.74
2795 3100 5.234757 ACATGCGAAACAAACTACGAGTAAA 59.765 36.000 0.00 0.00 0.00 2.01
2802 3107 2.724174 GGCAACATGCGAAACAAACTAC 59.276 45.455 0.00 0.00 46.21 2.73
2876 3181 8.274322 TCCAACCATTCAGAGTAATATGTGAAT 58.726 33.333 0.00 0.00 42.18 2.57
2891 3196 8.859090 GGTATCATTTCAATATCCAACCATTCA 58.141 33.333 0.00 0.00 0.00 2.57
3021 3607 8.732746 ATTATGGACAGAGTTATGTACAAACC 57.267 34.615 0.00 1.50 46.84 3.27
3077 3663 8.321005 CAGTTGTTGTATGTAGACATATTCACG 58.679 37.037 5.69 0.00 40.53 4.35
3079 3665 9.150348 CACAGTTGTTGTATGTAGACATATTCA 57.850 33.333 5.69 3.81 40.53 2.57
3117 3704 4.827284 AGTGCTATTAGGCAAACACTTTGT 59.173 37.500 0.00 0.00 44.18 2.83
3285 3872 5.331069 AGGTAGAGGTAAGCTTTAGTCACA 58.669 41.667 3.20 0.00 0.00 3.58
3286 3873 5.918426 AGGTAGAGGTAAGCTTTAGTCAC 57.082 43.478 3.20 0.00 0.00 3.67
3318 3905 3.054139 AGGCAGTGCTAATGGATTTCTGA 60.054 43.478 16.11 0.00 0.00 3.27
3319 3906 3.285484 AGGCAGTGCTAATGGATTTCTG 58.715 45.455 16.11 0.00 0.00 3.02
3330 3917 3.131223 GTCTACATGAGAAGGCAGTGCTA 59.869 47.826 16.11 0.00 35.37 3.49
3333 3920 3.194329 TCTGTCTACATGAGAAGGCAGTG 59.806 47.826 20.43 5.85 44.14 3.66
3347 3934 9.457110 CTGTACATATTGTTCATCTCTGTCTAC 57.543 37.037 0.00 0.00 27.53 2.59
3406 4007 8.578151 CATGGATAGGTAGAGGTAAGTTTAGTC 58.422 40.741 0.00 0.00 0.00 2.59
3450 4051 7.773149 TCTACTACCAACAGAAGAAATAGAGC 58.227 38.462 0.00 0.00 0.00 4.09
3540 4141 2.464157 AGCACACTAAAGCACCTCTC 57.536 50.000 0.00 0.00 0.00 3.20
3635 4240 2.738013 ACTACGGTTCCACTACTTGC 57.262 50.000 0.00 0.00 0.00 4.01
3669 4274 6.127423 ACTGCATACGAAGTCAATTAGTACCT 60.127 38.462 0.00 0.00 43.93 3.08
3804 4409 6.833933 ACAGTAGTTCATTTTCCAGGAAAACT 59.166 34.615 26.72 21.56 42.98 2.66
3969 4574 3.270877 AGAACATACCTTAGCTTTGCCG 58.729 45.455 0.00 0.00 0.00 5.69
4015 4620 6.127479 GGCAATCCATACAAAATACCTGACAA 60.127 38.462 0.00 0.00 0.00 3.18
4024 4629 6.183360 GCTCTTACTGGCAATCCATACAAAAT 60.183 38.462 0.00 0.00 42.51 1.82
4073 4678 5.297776 CCCGTTCTATCTGCAGATCAAAAAT 59.702 40.000 31.92 10.76 36.05 1.82
4192 4800 3.069289 CAAGTGAACACAGCTATGAGCA 58.931 45.455 0.00 0.00 45.56 4.26
4196 4804 4.035558 ACAACACAAGTGAACACAGCTATG 59.964 41.667 7.28 0.00 0.00 2.23
4208 4816 4.792704 GCCTAATGGACAACAACACAAGTG 60.793 45.833 0.00 0.00 34.57 3.16
4219 4827 3.806949 ACAAGAAGGCCTAATGGACAA 57.193 42.857 5.16 0.00 46.30 3.18
4220 4828 3.806949 AACAAGAAGGCCTAATGGACA 57.193 42.857 5.16 0.00 46.30 4.02
4221 4829 5.475564 TGTAAAACAAGAAGGCCTAATGGAC 59.524 40.000 5.16 4.22 43.41 4.02
4271 4879 9.011407 CATTAGCTGCTAATAGTACTATTACGC 57.989 37.037 28.82 28.20 34.83 4.42
4333 4941 7.173562 GTGACACTATTACACAACCAACCATTA 59.826 37.037 0.00 0.00 35.06 1.90
4410 5020 5.278957 CCAAAGGTAATGTGAAAGGGACAAG 60.279 44.000 0.00 0.00 0.00 3.16
4412 5022 4.148838 CCAAAGGTAATGTGAAAGGGACA 58.851 43.478 0.00 0.00 0.00 4.02
4464 5074 5.622460 CGCACAGAAGTCTTATACCTCAGTT 60.622 44.000 0.00 0.00 0.00 3.16
4483 5093 3.555547 GCACACATCACTAATATCGCACA 59.444 43.478 0.00 0.00 0.00 4.57
4604 5231 5.843673 TTTTGTGTTCTTGCTGGTATTGA 57.156 34.783 0.00 0.00 0.00 2.57
4610 5237 5.691754 GTCCTTAATTTTGTGTTCTTGCTGG 59.308 40.000 0.00 0.00 0.00 4.85
4618 5245 8.800370 AAACCAAATGTCCTTAATTTTGTGTT 57.200 26.923 0.00 0.00 30.70 3.32
4713 6863 3.132289 CCCCAGCTTTCTCATAACTCGTA 59.868 47.826 0.00 0.00 0.00 3.43
4758 6908 4.389992 ACGAATGCATTCAGTAGTCACTTG 59.610 41.667 32.72 17.36 36.61 3.16
4804 6954 5.831997 TCATTCACTCCATGTAGACATACG 58.168 41.667 0.00 0.00 34.26 3.06
4854 7005 9.739276 AATCCTGAATTGTTTTGACAGTATAGA 57.261 29.630 0.00 0.00 0.00 1.98
4860 7011 6.742109 ACTGAATCCTGAATTGTTTTGACAG 58.258 36.000 0.00 0.00 0.00 3.51
4883 7034 6.629128 TCTCAGAACTGAAGATCATGAAGAC 58.371 40.000 0.00 0.00 39.39 3.01
4926 7077 7.114670 TGTTGCATGAATGTGTTAATTTCGAAG 59.885 33.333 0.00 0.00 0.00 3.79
4949 7100 9.774742 GTCTTCTTTCTTTTATGCGATTATGTT 57.225 29.630 0.00 0.00 0.00 2.71
5007 7158 6.395426 TTCATGTCAAGACAGATTTTGCTT 57.605 33.333 8.99 0.00 45.48 3.91
5087 7238 4.191544 TGCATGGTCTTAACAGCACTATC 58.808 43.478 0.00 0.00 0.00 2.08
5136 7287 1.209019 GAAGCAGAATCAGCAGGAGGA 59.791 52.381 0.00 0.00 0.00 3.71
5189 7340 3.582208 AGATCATAGATGCCCTGAGTTCC 59.418 47.826 0.00 0.00 0.00 3.62
5285 7437 4.816385 GGGCTGTACGTGTACTATACTACA 59.184 45.833 11.14 0.00 37.00 2.74
5335 7487 0.457035 GCACCACTAACATGCCCATG 59.543 55.000 6.71 6.71 44.15 3.66
5338 7490 1.883021 GTGCACCACTAACATGCCC 59.117 57.895 5.22 0.00 38.63 5.36
5385 7537 6.346096 GGTAGCCTATAGAATTCAACACACA 58.654 40.000 8.44 0.00 0.00 3.72
5423 7575 7.391833 ACTTCTCTAAATTTGGACATTGAGACC 59.608 37.037 0.00 0.00 0.00 3.85
5464 7616 6.950842 TCTCAAAATGTCATCTCACTATGGT 58.049 36.000 0.00 0.00 0.00 3.55
5558 7729 9.220906 AGGTCAAGTATTTTATATACAGTGGGA 57.779 33.333 0.00 0.00 0.00 4.37
5616 7787 2.171448 AGTATCTCTGCCGCCTGAAAAT 59.829 45.455 0.00 0.00 0.00 1.82
5697 7869 9.667989 GTTTAAAAAGTACGTTGGTCACATAAT 57.332 29.630 0.00 0.00 0.00 1.28
5855 8027 1.946768 TGTTGTGGAAAGCCTTCTTCG 59.053 47.619 0.00 0.00 34.31 3.79
5905 8087 4.848660 AGCATAGGAGAGAGAGAGAGAGAT 59.151 45.833 0.00 0.00 0.00 2.75
5956 8158 2.549926 CACTACGGACATGCTGCAATA 58.450 47.619 6.36 0.00 0.00 1.90
6084 8286 6.875948 TCAATGTAAAAGAAGCAGCAAGTA 57.124 33.333 0.00 0.00 0.00 2.24
6134 8337 8.140112 AGGCGGACTTTCTCAATAATATCTAT 57.860 34.615 0.00 0.00 0.00 1.98
6154 8357 4.681942 GCTATGCTATTATCGATTAGGCGG 59.318 45.833 1.71 0.42 0.00 6.13
6333 8536 6.818142 AGGCAGTCCAAATATAAAAATTGCAC 59.182 34.615 0.00 0.00 33.74 4.57
6371 8608 3.664025 GCGCACTGACAATGAAAAAGTAC 59.336 43.478 0.30 0.00 0.00 2.73
6389 8626 3.552132 TCCTAATAACAATGGAGCGCA 57.448 42.857 11.47 0.00 0.00 6.09
6391 8628 8.070171 CACTAAATTCCTAATAACAATGGAGCG 58.930 37.037 0.00 0.00 0.00 5.03
6552 9153 0.475044 TCCCAGTTTAACAGGGCGTT 59.525 50.000 19.16 0.00 43.94 4.84
6553 9154 0.475044 TTCCCAGTTTAACAGGGCGT 59.525 50.000 19.16 0.00 43.94 5.68
6598 9199 2.535934 TTGTTGTTTCGTCACTGCAC 57.464 45.000 0.00 0.00 0.00 4.57
6606 9207 6.254804 GGCTACAAAAGAAATTGTTGTTTCGT 59.745 34.615 0.00 0.00 40.52 3.85
6607 9208 6.254589 TGGCTACAAAAGAAATTGTTGTTTCG 59.745 34.615 0.00 0.00 40.52 3.46
6608 9209 7.491048 TCTGGCTACAAAAGAAATTGTTGTTTC 59.509 33.333 0.00 0.00 40.52 2.78
6609 9210 7.327214 TCTGGCTACAAAAGAAATTGTTGTTT 58.673 30.769 0.00 0.00 40.52 2.83
6610 9211 6.872920 TCTGGCTACAAAAGAAATTGTTGTT 58.127 32.000 0.00 0.00 40.52 2.83
6652 9257 8.402798 TCAAATTTTCCAAGCTATCAGTAACA 57.597 30.769 0.00 0.00 0.00 2.41
6698 9303 6.418057 AGGATCCTGTCTCTGAAACATATC 57.582 41.667 15.29 0.00 0.00 1.63
6724 9329 7.496747 TGCCTACAAAGATTAAAAATATGGGC 58.503 34.615 0.00 0.00 0.00 5.36
6741 9346 5.876651 AGAGTGATGATGTATGCCTACAA 57.123 39.130 5.92 0.00 41.09 2.41
6811 9416 6.675026 TCTCTAGAAACGTTTGAAGAATCGA 58.325 36.000 20.10 10.91 0.00 3.59
6824 9429 4.576873 TGCCTACTCATCTCTCTAGAAACG 59.423 45.833 0.00 0.00 34.73 3.60
6833 9438 1.703411 GGCTCTGCCTACTCATCTCT 58.297 55.000 0.73 0.00 46.69 3.10
6887 9492 6.761099 TGTAGGTCTTATGTTCTCTCAGAC 57.239 41.667 0.00 0.00 0.00 3.51
6915 9520 1.683011 CCATGAATCAACGGAGGCCTT 60.683 52.381 6.77 0.00 0.00 4.35
6928 9533 6.737131 TCCTGTGATATTCCTATCCCATGAAT 59.263 38.462 0.00 0.00 34.03 2.57
6971 9618 4.522789 GCTGAACCTGAGTAAATTTTCCCA 59.477 41.667 0.00 0.00 0.00 4.37
7005 9655 5.946972 CGTCTAATATCACCATCCTACTCCT 59.053 44.000 0.00 0.00 0.00 3.69
7007 9657 6.821031 ACGTCTAATATCACCATCCTACTC 57.179 41.667 0.00 0.00 0.00 2.59
7012 9662 5.979288 ACCTACGTCTAATATCACCATCC 57.021 43.478 0.00 0.00 0.00 3.51
7043 9693 9.434275 TTTCTCCTAATATGACTAGGTGAATGA 57.566 33.333 13.45 2.69 43.43 2.57
7044 9694 9.703892 CTTTCTCCTAATATGACTAGGTGAATG 57.296 37.037 13.45 12.37 43.43 2.67
7085 9737 9.793259 TGAGGCGAGGATAAGAAATAAATTATT 57.207 29.630 0.00 0.00 0.00 1.40
7156 9808 0.884259 TGTAGCAAGCTCGCTTTGCA 60.884 50.000 3.51 0.00 43.56 4.08
7197 9849 0.456653 GTGCATTTGTGCTTAGGCGG 60.457 55.000 0.00 0.00 42.25 6.13
7216 9871 3.824414 AGAAGGCCGATAAACAAAACG 57.176 42.857 0.00 0.00 0.00 3.60
7226 9881 2.040412 AGGAACAAAGAAGAAGGCCGAT 59.960 45.455 0.00 0.00 0.00 4.18
7266 9921 4.202514 TGGGGGATACAATTATGCGATTCA 60.203 41.667 0.00 0.00 39.74 2.57
7294 9949 6.654582 TGCAGATCTACAAAATTAGCTCACAA 59.345 34.615 0.00 0.00 0.00 3.33
7335 9990 2.125512 GACTGCCGCCGACAGATT 60.126 61.111 7.60 0.00 38.55 2.40
7383 10038 0.882484 TGCACGATTCAAACGCCTCA 60.882 50.000 0.00 0.00 0.00 3.86
7387 10042 1.708680 GAAGTTGCACGATTCAAACGC 59.291 47.619 0.00 0.00 0.00 4.84
7389 10044 3.003275 TCCAGAAGTTGCACGATTCAAAC 59.997 43.478 7.30 0.00 0.00 2.93
7398 10053 3.211045 TGTAAACCTCCAGAAGTTGCAC 58.789 45.455 0.00 0.00 0.00 4.57
7467 10217 2.629137 AGCCACAGCAAAATCATGTGAA 59.371 40.909 6.14 0.00 45.67 3.18
7473 10233 1.545582 GCCTAAGCCACAGCAAAATCA 59.454 47.619 0.00 0.00 43.56 2.57
7486 10246 2.159085 ACACTTACAGATCGGCCTAAGC 60.159 50.000 0.00 0.00 38.76 3.09
7490 10250 1.557099 TCACACTTACAGATCGGCCT 58.443 50.000 0.00 0.00 0.00 5.19
7494 10254 6.183359 GCGATATTGATCACACTTACAGATCG 60.183 42.308 11.88 11.88 40.72 3.69
7502 10262 3.068165 TCTCCGCGATATTGATCACACTT 59.932 43.478 8.23 0.00 31.78 3.16
7503 10263 2.623416 TCTCCGCGATATTGATCACACT 59.377 45.455 8.23 0.00 31.78 3.55
7525 10285 5.299949 GGAAGCATTTCAATGTTCCAGTTT 58.700 37.500 18.95 0.00 41.27 2.66
7531 10291 5.105063 GCTAAGGGAAGCATTTCAATGTTC 58.895 41.667 1.59 4.51 42.30 3.18
7544 10304 3.982576 ACAAACAAACGCTAAGGGAAG 57.017 42.857 0.00 0.00 0.00 3.46
7550 10310 6.022821 GTGTGAGTTAACAAACAAACGCTAA 58.977 36.000 8.61 0.00 0.00 3.09
7551 10311 5.561993 GTGTGAGTTAACAAACAAACGCTA 58.438 37.500 8.61 0.00 0.00 4.26
7554 10314 4.258817 CACGTGTGAGTTAACAAACAAACG 59.741 41.667 26.08 26.08 45.55 3.60
7556 10316 5.359716 ACACGTGTGAGTTAACAAACAAA 57.640 34.783 22.71 0.00 0.00 2.83
7557 10317 6.479436 CATACACGTGTGAGTTAACAAACAA 58.521 36.000 30.83 5.95 0.00 2.83
7559 10319 4.901881 GCATACACGTGTGAGTTAACAAAC 59.098 41.667 30.83 6.08 0.00 2.93
7560 10320 4.571176 TGCATACACGTGTGAGTTAACAAA 59.429 37.500 30.83 7.21 0.00 2.83
7561 10321 4.120589 TGCATACACGTGTGAGTTAACAA 58.879 39.130 30.83 8.02 0.00 2.83
7564 10324 5.716094 AGTATGCATACACGTGTGAGTTAA 58.284 37.500 32.69 10.44 35.74 2.01
7566 10326 4.188247 AGTATGCATACACGTGTGAGTT 57.812 40.909 32.69 13.72 35.74 3.01
7567 10327 3.868757 AGTATGCATACACGTGTGAGT 57.131 42.857 32.69 13.84 35.74 3.41
7568 10328 4.173256 TCAAGTATGCATACACGTGTGAG 58.827 43.478 32.69 22.21 35.74 3.51
7569 10329 4.173256 CTCAAGTATGCATACACGTGTGA 58.827 43.478 32.69 24.20 35.74 3.58
7570 10330 3.926527 ACTCAAGTATGCATACACGTGTG 59.073 43.478 32.69 26.59 35.74 3.82
7573 10333 4.157840 TCAGACTCAAGTATGCATACACGT 59.842 41.667 32.69 23.32 37.20 4.49
7575 10335 5.895928 TCTCAGACTCAAGTATGCATACAC 58.104 41.667 32.69 14.84 37.20 2.90
7576 10336 5.654209 ACTCTCAGACTCAAGTATGCATACA 59.346 40.000 32.69 15.64 37.20 2.29
7577 10337 5.976534 CACTCTCAGACTCAAGTATGCATAC 59.023 44.000 26.26 26.26 37.20 2.39
7578 10338 5.888161 TCACTCTCAGACTCAAGTATGCATA 59.112 40.000 1.16 1.16 37.20 3.14
7579 10339 4.708909 TCACTCTCAGACTCAAGTATGCAT 59.291 41.667 3.79 3.79 37.20 3.96
7580 10340 4.082125 TCACTCTCAGACTCAAGTATGCA 58.918 43.478 0.00 0.00 37.20 3.96
7581 10341 4.082517 TGTCACTCTCAGACTCAAGTATGC 60.083 45.833 0.00 0.00 37.20 3.14
7590 10361 1.959985 CACAGGTGTCACTCTCAGACT 59.040 52.381 2.35 0.00 36.94 3.24
7592 10363 1.332195 CCACAGGTGTCACTCTCAGA 58.668 55.000 2.35 0.00 0.00 3.27
7624 10395 1.404583 CCTGACACATCATGAGCGACA 60.405 52.381 0.09 0.00 33.22 4.35
7625 10396 1.284657 CCTGACACATCATGAGCGAC 58.715 55.000 0.09 0.00 33.22 5.19
7626 10397 0.176449 CCCTGACACATCATGAGCGA 59.824 55.000 0.09 0.00 33.22 4.93
7627 10398 1.434622 GCCCTGACACATCATGAGCG 61.435 60.000 0.09 0.00 33.22 5.03
7628 10399 0.107312 AGCCCTGACACATCATGAGC 60.107 55.000 0.09 0.00 33.22 4.26
7629 10400 1.208776 TCAGCCCTGACACATCATGAG 59.791 52.381 0.09 0.00 34.14 2.90
7630 10401 1.208776 CTCAGCCCTGACACATCATGA 59.791 52.381 0.00 0.00 35.46 3.07
7631 10402 1.208776 TCTCAGCCCTGACACATCATG 59.791 52.381 0.00 0.00 35.46 3.07
7633 10404 0.900421 CTCTCAGCCCTGACACATCA 59.100 55.000 0.00 0.00 35.46 3.07
7634 10405 0.177604 CCTCTCAGCCCTGACACATC 59.822 60.000 0.00 0.00 35.46 3.06
7635 10406 1.908340 GCCTCTCAGCCCTGACACAT 61.908 60.000 0.00 0.00 35.46 3.21
7636 10407 2.587247 GCCTCTCAGCCCTGACACA 61.587 63.158 0.00 0.00 35.46 3.72
7637 10408 2.267324 GCCTCTCAGCCCTGACAC 59.733 66.667 0.00 0.00 35.46 3.67
7638 10409 2.121385 AGCCTCTCAGCCCTGACA 59.879 61.111 0.00 0.00 35.46 3.58
7639 10410 1.336632 ATCAGCCTCTCAGCCCTGAC 61.337 60.000 0.00 0.00 37.18 3.51
7640 10411 0.619832 AATCAGCCTCTCAGCCCTGA 60.620 55.000 0.00 0.00 38.54 3.86
7641 10412 0.179051 GAATCAGCCTCTCAGCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
7652 10423 0.249657 CCTCGCCTGTAGAATCAGCC 60.250 60.000 0.00 0.00 34.47 4.85
7683 10461 6.218019 TGTTGCTTTCCGCGTATATACTAAT 58.782 36.000 4.92 0.00 43.27 1.73
7715 10504 0.876342 GCTCTCCTTTATGGGTCGCG 60.876 60.000 0.00 0.00 36.20 5.87
7716 10505 0.466124 AGCTCTCCTTTATGGGTCGC 59.534 55.000 0.00 0.00 36.20 5.19
7717 10506 1.069358 GGAGCTCTCCTTTATGGGTCG 59.931 57.143 14.64 0.00 46.16 4.79
7757 10552 2.518349 ACAACCCCACAGCAACGG 60.518 61.111 0.00 0.00 0.00 4.44
7758 10553 2.721231 CACAACCCCACAGCAACG 59.279 61.111 0.00 0.00 0.00 4.10
7759 10554 3.128375 CCACAACCCCACAGCAAC 58.872 61.111 0.00 0.00 0.00 4.17
7760 10555 2.837291 GCCACAACCCCACAGCAA 60.837 61.111 0.00 0.00 0.00 3.91
7761 10556 4.912395 GGCCACAACCCCACAGCA 62.912 66.667 0.00 0.00 0.00 4.41
7762 10557 4.603535 AGGCCACAACCCCACAGC 62.604 66.667 5.01 0.00 0.00 4.40
7763 10558 2.282462 GAGGCCACAACCCCACAG 60.282 66.667 5.01 0.00 0.00 3.66
7764 10559 2.424842 GATGAGGCCACAACCCCACA 62.425 60.000 7.05 0.00 0.00 4.17
7765 10560 1.678970 GATGAGGCCACAACCCCAC 60.679 63.158 7.05 0.00 0.00 4.61
7766 10561 1.508667 ATGATGAGGCCACAACCCCA 61.509 55.000 7.05 3.82 0.00 4.96
7767 10562 1.039233 CATGATGAGGCCACAACCCC 61.039 60.000 7.05 0.00 0.00 4.95
7768 10563 1.039233 CCATGATGAGGCCACAACCC 61.039 60.000 7.05 0.29 0.00 4.11
7769 10564 0.034186 TCCATGATGAGGCCACAACC 60.034 55.000 7.05 2.93 0.00 3.77
7770 10565 1.098050 GTCCATGATGAGGCCACAAC 58.902 55.000 7.05 5.04 0.00 3.32
7771 10566 0.034186 GGTCCATGATGAGGCCACAA 60.034 55.000 7.05 0.00 0.00 3.33
7772 10567 1.206811 TGGTCCATGATGAGGCCACA 61.207 55.000 4.98 4.98 30.71 4.17
7773 10568 0.184451 ATGGTCCATGATGAGGCCAC 59.816 55.000 5.01 0.00 35.93 5.01
7774 10569 0.184211 CATGGTCCATGATGAGGCCA 59.816 55.000 25.39 9.17 43.81 5.36
7775 10570 0.475475 TCATGGTCCATGATGAGGCC 59.525 55.000 27.61 0.00 44.60 5.19
7801 10596 2.743636 TCGGTAGTTTCCAGCTGAAG 57.256 50.000 17.39 0.00 33.63 3.02
7802 10597 3.695830 ATTCGGTAGTTTCCAGCTGAA 57.304 42.857 17.39 4.81 0.00 3.02
7803 10598 3.244422 ACAATTCGGTAGTTTCCAGCTGA 60.244 43.478 17.39 0.00 0.00 4.26
7804 10599 3.074412 ACAATTCGGTAGTTTCCAGCTG 58.926 45.455 6.78 6.78 0.00 4.24
7805 10600 3.074412 CACAATTCGGTAGTTTCCAGCT 58.926 45.455 0.00 0.00 0.00 4.24
7817 10612 0.869068 TACGTGTTGCCACAATTCGG 59.131 50.000 0.00 0.00 41.93 4.30
7829 10629 3.497262 TCGATCGCTATCTCATACGTGTT 59.503 43.478 11.09 0.00 0.00 3.32
7895 10695 1.202915 AGCACCACACACCAATGATGA 60.203 47.619 0.00 0.00 0.00 2.92
7916 10716 1.108727 AGAGAGAGCGCCTGATCCAG 61.109 60.000 2.29 0.00 0.00 3.86
7927 10727 2.335316 TTAGGGACGAGAGAGAGAGC 57.665 55.000 0.00 0.00 0.00 4.09
7929 10729 2.778270 TGGATTAGGGACGAGAGAGAGA 59.222 50.000 0.00 0.00 0.00 3.10
8101 10906 0.528684 GTACCTGAGCGATGGACTGC 60.529 60.000 0.00 0.00 0.00 4.40
8120 10925 0.108138 CCCTCGGAGTAGCTTTGTGG 60.108 60.000 4.02 0.00 0.00 4.17
8162 10968 3.069586 CCTGCCATGATGCATCATCTTTT 59.930 43.478 34.17 15.85 45.23 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.