Multiple sequence alignment - TraesCS7D01G263800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263800 chr7D 100.000 5035 0 0 1 5035 244465330 244470364 0.000000e+00 9299.0
1 TraesCS7D01G263800 chr7A 91.396 2278 99 36 64 2281 260029545 260031785 0.000000e+00 3031.0
2 TraesCS7D01G263800 chr7A 88.307 1223 59 39 2274 3475 260031864 260033023 0.000000e+00 1389.0
3 TraesCS7D01G263800 chr7A 89.374 1054 65 19 3490 4512 260033008 260034045 0.000000e+00 1282.0
4 TraesCS7D01G263800 chr7A 92.308 65 4 1 1 64 260028675 260028739 1.930000e-14 91.6
5 TraesCS7D01G263800 chr7B 92.279 1852 55 31 67 1892 219648146 219649935 0.000000e+00 2547.0
6 TraesCS7D01G263800 chr7B 91.434 1576 64 31 1891 3433 219650053 219651590 0.000000e+00 2097.0
7 TraesCS7D01G263800 chr7B 89.153 1051 55 25 3490 4518 219651796 219652809 0.000000e+00 1254.0
8 TraesCS7D01G263800 chr5D 88.889 171 15 4 4539 4706 95062712 95062881 1.840000e-49 207.0
9 TraesCS7D01G263800 chr5D 85.976 164 18 3 4547 4707 505425730 505425569 2.410000e-38 171.0
10 TraesCS7D01G263800 chr5D 96.875 32 0 1 1544 1574 396370482 396370513 9.000000e-03 52.8
11 TraesCS7D01G263800 chr3D 87.574 169 21 0 4538 4706 33359661 33359829 3.980000e-46 196.0
12 TraesCS7D01G263800 chr3B 87.582 153 18 1 4569 4720 130624460 130624612 5.180000e-40 176.0
13 TraesCS7D01G263800 chr2D 87.586 145 14 2 4560 4701 484041801 484041944 1.120000e-36 165.0
14 TraesCS7D01G263800 chr2D 96.875 32 1 0 1540 1571 417544317 417544348 3.000000e-03 54.7
15 TraesCS7D01G263800 chr4D 82.873 181 26 3 4534 4711 15730662 15730840 1.880000e-34 158.0
16 TraesCS7D01G263800 chr1B 83.041 171 21 6 4539 4705 364304783 364304617 1.130000e-31 148.0
17 TraesCS7D01G263800 chrUn 82.022 178 25 5 4539 4713 92752776 92752603 1.460000e-30 145.0
18 TraesCS7D01G263800 chr4B 81.006 179 30 2 4539 4713 109312092 109311914 6.800000e-29 139.0
19 TraesCS7D01G263800 chr6D 76.923 221 35 7 4818 5035 53590840 53590633 1.480000e-20 111.0
20 TraesCS7D01G263800 chr5B 95.455 44 2 0 4992 5035 544811113 544811070 2.510000e-08 71.3
21 TraesCS7D01G263800 chr5B 96.875 32 0 1 1544 1574 476170506 476170537 9.000000e-03 52.8
22 TraesCS7D01G263800 chr2B 96.875 32 1 0 1540 1571 489419249 489419280 3.000000e-03 54.7
23 TraesCS7D01G263800 chr5A 96.875 32 0 1 1544 1574 502072228 502072259 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263800 chr7D 244465330 244470364 5034 False 9299.0 9299 100.000000 1 5035 1 chr7D.!!$F1 5034
1 TraesCS7D01G263800 chr7A 260028675 260034045 5370 False 1448.4 3031 90.346250 1 4512 4 chr7A.!!$F1 4511
2 TraesCS7D01G263800 chr7B 219648146 219652809 4663 False 1966.0 2547 90.955333 67 4518 3 chr7B.!!$F1 4451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 1552 0.179029 CCCCCGTCTCTCTCTCTCTC 60.179 65.000 0.00 0.0 0.0 3.20 F
727 1553 0.837272 CCCCGTCTCTCTCTCTCTCT 59.163 60.000 0.00 0.0 0.0 3.10 F
731 1557 1.136305 CGTCTCTCTCTCTCTCTCCGT 59.864 57.143 0.00 0.0 0.0 4.69 F
2838 3943 0.554792 AAGAGGGGGCTAGCTACGTA 59.445 55.000 15.72 0.0 0.0 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 3671 0.250234 CGGATTCTCAACAGGCAGGA 59.750 55.000 0.0 0.0 0.0 3.86 R
2575 3674 1.071542 TCAACGGATTCTCAACAGGCA 59.928 47.619 0.0 0.0 0.0 4.75 R
2879 3984 3.002656 ACGAAACATCTCTTGCAACAGTG 59.997 43.478 0.0 0.0 0.0 3.66 R
4871 6216 0.036022 GGATCTAGGCTCCCACATGC 59.964 60.000 0.0 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.652524 TCAGAAGTTAGATTGAGCTACATCT 57.347 36.000 11.08 11.08 0.00 2.90
44 45 8.072321 TCAGAAGTTAGATTGAGCTACATCTT 57.928 34.615 11.47 0.00 0.00 2.40
99 907 2.239654 CTGGAATTGGTTGAGCCCTAGA 59.760 50.000 0.00 0.00 36.04 2.43
102 910 3.454812 GGAATTGGTTGAGCCCTAGACTA 59.545 47.826 0.00 0.00 36.04 2.59
113 921 6.779860 TGAGCCCTAGACTATTGTTTTTCTT 58.220 36.000 0.00 0.00 0.00 2.52
116 924 7.886338 AGCCCTAGACTATTGTTTTTCTTTTG 58.114 34.615 0.00 0.00 0.00 2.44
117 925 7.724061 AGCCCTAGACTATTGTTTTTCTTTTGA 59.276 33.333 0.00 0.00 0.00 2.69
193 1001 4.040706 ACAATTGTTCTACGGTTCAGGGTA 59.959 41.667 4.92 0.00 0.00 3.69
250 1058 6.347725 GGCTAAGACATGTCACAAACTTACAG 60.348 42.308 27.02 8.28 0.00 2.74
334 1142 5.113502 CAGTCATCCTGAAACCAAAAGAC 57.886 43.478 0.00 0.00 44.49 3.01
336 1144 5.242393 CAGTCATCCTGAAACCAAAAGACAT 59.758 40.000 0.00 0.00 44.49 3.06
337 1145 5.474876 AGTCATCCTGAAACCAAAAGACATC 59.525 40.000 0.00 0.00 0.00 3.06
357 1181 5.977129 ACATCATGAAACTGAAAACCGAAAC 59.023 36.000 0.00 0.00 0.00 2.78
456 1280 4.605967 CGTTGCTTGCGTTGCCGT 62.606 61.111 0.00 0.00 36.15 5.68
638 1464 2.450609 TGGAGTAAACTTCACGCCTC 57.549 50.000 0.00 0.00 36.86 4.70
705 1531 1.008084 ACTCCCCCTCCCTACTACAAC 59.992 57.143 0.00 0.00 0.00 3.32
726 1552 0.179029 CCCCCGTCTCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
727 1553 0.837272 CCCCGTCTCTCTCTCTCTCT 59.163 60.000 0.00 0.00 0.00 3.10
728 1554 1.202651 CCCCGTCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
730 1556 1.538204 CCGTCTCTCTCTCTCTCTCCG 60.538 61.905 0.00 0.00 0.00 4.63
731 1557 1.136305 CGTCTCTCTCTCTCTCTCCGT 59.864 57.143 0.00 0.00 0.00 4.69
732 1558 2.359848 CGTCTCTCTCTCTCTCTCCGTA 59.640 54.545 0.00 0.00 0.00 4.02
733 1559 3.550233 CGTCTCTCTCTCTCTCTCCGTAG 60.550 56.522 0.00 0.00 0.00 3.51
1696 2547 5.862924 ACTGCATGTACTGTGTCAATTAC 57.137 39.130 0.00 0.00 0.00 1.89
1697 2548 5.551233 ACTGCATGTACTGTGTCAATTACT 58.449 37.500 0.00 0.00 0.00 2.24
1698 2549 5.639506 ACTGCATGTACTGTGTCAATTACTC 59.360 40.000 0.00 0.00 0.00 2.59
1699 2550 5.793817 TGCATGTACTGTGTCAATTACTCT 58.206 37.500 0.00 0.00 0.00 3.24
1700 2551 5.869344 TGCATGTACTGTGTCAATTACTCTC 59.131 40.000 0.00 0.00 0.00 3.20
1701 2552 5.292101 GCATGTACTGTGTCAATTACTCTCC 59.708 44.000 0.00 0.00 0.00 3.71
1702 2553 6.634805 CATGTACTGTGTCAATTACTCTCCT 58.365 40.000 0.00 0.00 0.00 3.69
1703 2554 6.665992 TGTACTGTGTCAATTACTCTCCTT 57.334 37.500 0.00 0.00 0.00 3.36
1704 2555 6.688578 TGTACTGTGTCAATTACTCTCCTTC 58.311 40.000 0.00 0.00 0.00 3.46
1705 2556 5.153950 ACTGTGTCAATTACTCTCCTTCC 57.846 43.478 0.00 0.00 0.00 3.46
1706 2557 4.177026 CTGTGTCAATTACTCTCCTTCCG 58.823 47.826 0.00 0.00 0.00 4.30
1707 2558 3.830178 TGTGTCAATTACTCTCCTTCCGA 59.170 43.478 0.00 0.00 0.00 4.55
1708 2559 4.282449 TGTGTCAATTACTCTCCTTCCGAA 59.718 41.667 0.00 0.00 0.00 4.30
1709 2560 5.046591 TGTGTCAATTACTCTCCTTCCGAAT 60.047 40.000 0.00 0.00 0.00 3.34
1710 2561 6.153851 TGTGTCAATTACTCTCCTTCCGAATA 59.846 38.462 0.00 0.00 0.00 1.75
1711 2562 7.039882 GTGTCAATTACTCTCCTTCCGAATAA 58.960 38.462 0.00 0.00 0.00 1.40
1712 2563 7.711339 GTGTCAATTACTCTCCTTCCGAATAAT 59.289 37.037 0.00 0.00 0.00 1.28
1713 2564 7.710907 TGTCAATTACTCTCCTTCCGAATAATG 59.289 37.037 0.00 0.00 0.00 1.90
1714 2565 7.711339 GTCAATTACTCTCCTTCCGAATAATGT 59.289 37.037 0.00 0.00 0.00 2.71
1715 2566 8.265055 TCAATTACTCTCCTTCCGAATAATGTT 58.735 33.333 0.00 0.00 0.00 2.71
1799 2658 2.952978 AGTAGTGCTACTCCAATCTCCG 59.047 50.000 6.08 0.00 42.30 4.63
1933 2917 6.387041 TTCACTGTTAGTATCCATACCTCG 57.613 41.667 0.00 0.00 33.79 4.63
2089 3082 4.839668 AGTTAACTAGCTAGCAGGATCG 57.160 45.455 20.91 0.60 0.00 3.69
2172 3171 6.919662 CGACAGTTACCAACTACTTAACTCAA 59.080 38.462 0.00 0.00 40.46 3.02
2226 3228 6.314648 GCGTAACCTAATTAACCAGCTTAACT 59.685 38.462 0.00 0.00 0.00 2.24
2281 3283 5.353394 ACCACTCTTGCCGAGATTAATAA 57.647 39.130 7.08 0.00 42.62 1.40
2282 3284 5.116882 ACCACTCTTGCCGAGATTAATAAC 58.883 41.667 7.08 0.00 42.62 1.89
2445 3544 6.720112 ATTATTTGACCTGACCAATGGATG 57.280 37.500 6.16 0.00 0.00 3.51
2446 3545 7.899401 CAATTATTTGACCTGACCAATGGATGG 60.899 40.741 6.16 7.34 44.39 3.51
2571 3670 3.221771 CTGTCCTAGATGCTAGCTCTGT 58.778 50.000 17.23 4.56 0.00 3.41
2572 3671 3.636300 CTGTCCTAGATGCTAGCTCTGTT 59.364 47.826 17.23 0.00 0.00 3.16
2575 3674 3.117322 TCCTAGATGCTAGCTCTGTTCCT 60.117 47.826 17.23 5.03 0.00 3.36
2695 3797 6.860023 AGTTGCTCGACCGTATTTACATATAC 59.140 38.462 0.00 0.00 0.00 1.47
2696 3798 6.316440 TGCTCGACCGTATTTACATATACA 57.684 37.500 0.00 0.00 31.80 2.29
2697 3799 6.144854 TGCTCGACCGTATTTACATATACAC 58.855 40.000 0.00 0.00 31.80 2.90
2838 3943 0.554792 AAGAGGGGGCTAGCTACGTA 59.445 55.000 15.72 0.00 0.00 3.57
2839 3944 0.554792 AGAGGGGGCTAGCTACGTAA 59.445 55.000 15.72 0.00 0.00 3.18
2879 3984 0.975887 ACAACAATTCCATGGCCACC 59.024 50.000 8.16 0.00 0.00 4.61
2905 4013 4.275689 TGTTGCAAGAGATGTTTCGTCAAT 59.724 37.500 0.00 0.00 0.00 2.57
2933 4041 1.435408 GCATCTTCTCCTCGCTTGGC 61.435 60.000 0.00 0.00 0.00 4.52
2939 4047 3.907260 CTCCTCGCTTGGCCTGCAA 62.907 63.158 18.55 2.39 0.00 4.08
2940 4048 3.437795 CCTCGCTTGGCCTGCAAG 61.438 66.667 18.55 11.17 0.00 4.01
3104 4220 3.111939 CCAGAGCTAGGGTCGTCG 58.888 66.667 0.00 0.00 35.00 5.12
3175 4291 9.886132 GATATATAGGATTAATTCGTGGTGGTT 57.114 33.333 0.00 0.00 0.00 3.67
3192 4308 2.627699 TGGTTTGTGGCAATCTCCTTTC 59.372 45.455 0.00 0.00 0.00 2.62
3245 4361 5.751990 GTGTTCGTTAGGAATATTGGATCGT 59.248 40.000 0.00 0.00 36.92 3.73
3254 4370 6.390721 AGGAATATTGGATCGTCGATGTAAG 58.609 40.000 13.54 0.00 0.00 2.34
3270 4386 5.579511 CGATGTAAGTGGATTCCGTTAGTTT 59.420 40.000 0.00 0.00 0.00 2.66
3282 4398 4.581868 TCCGTTAGTTTGTTGGATTAGGG 58.418 43.478 0.00 0.00 0.00 3.53
3293 4413 4.286549 TGTTGGATTAGGGTTCCGTTCTAA 59.713 41.667 0.00 0.00 35.94 2.10
3304 4424 1.067565 TCCGTTCTAAGCTGCTGTCAG 60.068 52.381 1.35 1.13 43.16 3.51
3316 4436 1.586541 CTGTCAGCGTGAGTGCCTA 59.413 57.895 0.00 0.00 34.65 3.93
3335 4455 3.506844 CCTAGCTAGTTAGGATTCCCGAC 59.493 52.174 24.44 0.00 42.39 4.79
3342 4462 5.437191 AGTTAGGATTCCCGACATCTTTT 57.563 39.130 0.00 0.00 37.58 2.27
3343 4463 5.429130 AGTTAGGATTCCCGACATCTTTTC 58.571 41.667 0.00 0.00 37.58 2.29
3426 4725 8.001881 TGGATTGAGAACTAGTAGAAGTGATC 57.998 38.462 3.59 0.85 0.00 2.92
3472 4771 9.544579 AGTACTAGGTTAGAAGTGTTATTCCTT 57.455 33.333 0.00 0.00 0.00 3.36
3473 4772 9.800433 GTACTAGGTTAGAAGTGTTATTCCTTC 57.200 37.037 0.00 0.00 37.85 3.46
3474 4773 8.667592 ACTAGGTTAGAAGTGTTATTCCTTCT 57.332 34.615 7.06 7.06 46.77 2.85
3475 4774 9.765295 ACTAGGTTAGAAGTGTTATTCCTTCTA 57.235 33.333 5.30 5.30 44.18 2.10
3478 4777 8.890124 GGTTAGAAGTGTTATTCCTTCTATCC 57.110 38.462 15.43 15.43 45.09 2.59
3479 4778 7.932491 GGTTAGAAGTGTTATTCCTTCTATCCC 59.068 40.741 17.79 13.20 45.09 3.85
3480 4779 6.163135 AGAAGTGTTATTCCTTCTATCCCG 57.837 41.667 0.29 0.00 44.18 5.14
3481 4780 4.338379 AGTGTTATTCCTTCTATCCCGC 57.662 45.455 0.00 0.00 0.00 6.13
3482 4781 3.709653 AGTGTTATTCCTTCTATCCCGCA 59.290 43.478 0.00 0.00 0.00 5.69
3483 4782 4.163458 AGTGTTATTCCTTCTATCCCGCAA 59.837 41.667 0.00 0.00 0.00 4.85
3484 4783 4.879545 GTGTTATTCCTTCTATCCCGCAAA 59.120 41.667 0.00 0.00 0.00 3.68
3485 4784 5.355910 GTGTTATTCCTTCTATCCCGCAAAA 59.644 40.000 0.00 0.00 0.00 2.44
3486 4785 5.946972 TGTTATTCCTTCTATCCCGCAAAAA 59.053 36.000 0.00 0.00 0.00 1.94
3538 4837 7.590279 ACTCCTAAAACGTTGTTAATCCAATG 58.410 34.615 0.00 0.00 37.36 2.82
3591 4900 2.158740 TCCAATCCCAGAACGAAACACA 60.159 45.455 0.00 0.00 0.00 3.72
3609 4918 8.264632 CGAAACACACACTAGTTCTTTTAGTAC 58.735 37.037 0.00 0.00 30.48 2.73
3610 4919 9.310716 GAAACACACACTAGTTCTTTTAGTACT 57.689 33.333 0.00 0.00 30.48 2.73
3623 4932 6.310197 TCTTTTAGTACTAAGAGCGTCGTTC 58.690 40.000 22.44 0.13 30.12 3.95
3629 4938 6.672147 AGTACTAAGAGCGTCGTTCTTTTTA 58.328 36.000 26.08 15.77 35.01 1.52
3630 4939 6.800892 AGTACTAAGAGCGTCGTTCTTTTTAG 59.199 38.462 26.08 19.83 35.01 1.85
3631 4940 5.527033 ACTAAGAGCGTCGTTCTTTTTAGT 58.473 37.500 26.08 20.39 35.01 2.24
3632 4941 5.981915 ACTAAGAGCGTCGTTCTTTTTAGTT 59.018 36.000 26.08 6.11 35.01 2.24
3633 4942 5.729974 AAGAGCGTCGTTCTTTTTAGTTT 57.270 34.783 17.41 0.00 29.13 2.66
3634 4943 5.729974 AGAGCGTCGTTCTTTTTAGTTTT 57.270 34.783 5.70 0.00 0.00 2.43
3635 4944 6.115450 AGAGCGTCGTTCTTTTTAGTTTTT 57.885 33.333 5.70 0.00 0.00 1.94
3671 4980 7.093727 ACCAGTCTAGTACACGAGTAGTAGTAA 60.094 40.741 24.88 11.43 46.96 2.24
3679 4988 8.954350 AGTACACGAGTAGTAGTAATGTCATTT 58.046 33.333 2.79 0.00 32.15 2.32
3682 4991 8.954350 ACACGAGTAGTAGTAATGTCATTTACT 58.046 33.333 2.79 8.91 43.19 2.24
3683 4992 9.222916 CACGAGTAGTAGTAATGTCATTTACTG 57.777 37.037 15.68 9.39 41.37 2.74
3923 5233 3.814268 CAAACGCCGGGCATCCAG 61.814 66.667 20.71 4.43 0.00 3.86
4045 5364 3.036783 GCAGCTGAGAAGCCAAGCG 62.037 63.158 20.43 0.00 34.90 4.68
4135 5454 3.011595 ACCAGGGGAAATGAATGATGTGA 59.988 43.478 0.00 0.00 0.00 3.58
4153 5474 3.960102 TGTGACCTTTTTCTTGCTCCAAT 59.040 39.130 0.00 0.00 0.00 3.16
4305 5628 4.000331 AGTAGCAGATGTACCATGCATC 58.000 45.455 14.22 4.20 42.45 3.91
4313 5636 5.602458 GATGTACCATGCATCTGTGTATG 57.398 43.478 0.00 0.34 44.90 2.39
4365 5702 3.125146 CACTGCATGCACGTGTAATAACT 59.875 43.478 27.84 0.00 0.00 2.24
4380 5717 3.770263 ATAACTTGCGAGCTGTACGTA 57.230 42.857 0.00 0.00 0.00 3.57
4418 5755 6.239430 GGAAGAGAAAAATGGAAGCCTTTCTT 60.239 38.462 0.00 0.00 38.05 2.52
4432 5771 3.578688 CCTTTCTTGTTTACTGCCATGC 58.421 45.455 0.00 0.00 0.00 4.06
4436 5775 6.398234 TTTCTTGTTTACTGCCATGCTTTA 57.602 33.333 0.00 0.00 0.00 1.85
4439 5778 4.782019 TGTTTACTGCCATGCTTTAAGG 57.218 40.909 0.00 0.00 0.00 2.69
4467 5809 1.041447 GCTTACTCTGGACCGGCCTA 61.041 60.000 14.76 0.00 37.63 3.93
4472 5814 2.768344 CTGGACCGGCCTATGGGT 60.768 66.667 14.76 0.00 39.83 4.51
4483 5825 1.679032 GCCTATGGGTTCTGGTCACAC 60.679 57.143 0.00 0.00 34.45 3.82
4484 5826 1.909302 CCTATGGGTTCTGGTCACACT 59.091 52.381 0.00 0.00 0.00 3.55
4494 5836 3.542648 TCTGGTCACACTCTATACTCGG 58.457 50.000 0.00 0.00 0.00 4.63
4495 5837 3.054582 TCTGGTCACACTCTATACTCGGT 60.055 47.826 0.00 0.00 0.00 4.69
4525 5870 7.658179 GTCATGAGACACAAGATTTGACTAA 57.342 36.000 0.00 0.00 44.34 2.24
4526 5871 8.261492 GTCATGAGACACAAGATTTGACTAAT 57.739 34.615 0.00 0.00 44.34 1.73
4527 5872 8.173775 GTCATGAGACACAAGATTTGACTAATG 58.826 37.037 0.00 0.00 44.34 1.90
4528 5873 7.879677 TCATGAGACACAAGATTTGACTAATGT 59.120 33.333 0.00 0.00 30.76 2.71
4529 5874 8.509690 CATGAGACACAAGATTTGACTAATGTT 58.490 33.333 0.00 0.00 30.37 2.71
4530 5875 8.450578 TGAGACACAAGATTTGACTAATGTTT 57.549 30.769 0.00 0.00 27.93 2.83
4531 5876 8.902806 TGAGACACAAGATTTGACTAATGTTTT 58.097 29.630 0.00 0.00 27.93 2.43
4532 5877 9.736023 GAGACACAAGATTTGACTAATGTTTTT 57.264 29.630 0.00 0.00 27.93 1.94
4533 5878 9.520204 AGACACAAGATTTGACTAATGTTTTTG 57.480 29.630 0.00 0.00 27.93 2.44
4534 5879 9.301153 GACACAAGATTTGACTAATGTTTTTGT 57.699 29.630 0.00 4.37 31.15 2.83
4535 5880 9.651913 ACACAAGATTTGACTAATGTTTTTGTT 57.348 25.926 0.00 0.00 27.93 2.83
4538 5883 9.424659 CAAGATTTGACTAATGTTTTTGTTTGC 57.575 29.630 0.00 0.00 27.93 3.68
4539 5884 8.141835 AGATTTGACTAATGTTTTTGTTTGCC 57.858 30.769 0.00 0.00 0.00 4.52
4540 5885 7.986889 AGATTTGACTAATGTTTTTGTTTGCCT 59.013 29.630 0.00 0.00 0.00 4.75
4541 5886 7.532682 TTTGACTAATGTTTTTGTTTGCCTC 57.467 32.000 0.00 0.00 0.00 4.70
4542 5887 6.463995 TGACTAATGTTTTTGTTTGCCTCT 57.536 33.333 0.00 0.00 0.00 3.69
4543 5888 7.575414 TGACTAATGTTTTTGTTTGCCTCTA 57.425 32.000 0.00 0.00 0.00 2.43
4544 5889 7.648142 TGACTAATGTTTTTGTTTGCCTCTAG 58.352 34.615 0.00 0.00 0.00 2.43
4545 5890 7.284489 TGACTAATGTTTTTGTTTGCCTCTAGT 59.716 33.333 0.00 0.00 0.00 2.57
4546 5891 7.425606 ACTAATGTTTTTGTTTGCCTCTAGTG 58.574 34.615 0.00 0.00 0.00 2.74
4547 5892 5.852282 ATGTTTTTGTTTGCCTCTAGTGT 57.148 34.783 0.00 0.00 0.00 3.55
4548 5893 5.243426 TGTTTTTGTTTGCCTCTAGTGTC 57.757 39.130 0.00 0.00 0.00 3.67
4549 5894 4.201871 TGTTTTTGTTTGCCTCTAGTGTCG 60.202 41.667 0.00 0.00 0.00 4.35
4550 5895 1.508632 TTGTTTGCCTCTAGTGTCGC 58.491 50.000 0.00 0.00 0.00 5.19
4551 5896 0.320421 TGTTTGCCTCTAGTGTCGCC 60.320 55.000 0.00 0.00 0.00 5.54
4552 5897 1.019805 GTTTGCCTCTAGTGTCGCCC 61.020 60.000 0.00 0.00 0.00 6.13
4553 5898 2.180159 TTTGCCTCTAGTGTCGCCCC 62.180 60.000 0.00 0.00 0.00 5.80
4554 5899 3.851128 GCCTCTAGTGTCGCCCCC 61.851 72.222 0.00 0.00 0.00 5.40
4583 5928 3.914984 ACACGGGATGTCTCAGTTG 57.085 52.632 0.00 0.00 36.54 3.16
4584 5929 0.320771 ACACGGGATGTCTCAGTTGC 60.321 55.000 0.00 0.00 36.54 4.17
4585 5930 1.021390 CACGGGATGTCTCAGTTGCC 61.021 60.000 0.00 0.00 0.00 4.52
4586 5931 1.811266 CGGGATGTCTCAGTTGCCG 60.811 63.158 0.00 0.00 0.00 5.69
4587 5932 2.109126 GGGATGTCTCAGTTGCCGC 61.109 63.158 0.00 0.00 0.00 6.53
4588 5933 2.109126 GGATGTCTCAGTTGCCGCC 61.109 63.158 0.00 0.00 0.00 6.13
4589 5934 1.078848 GATGTCTCAGTTGCCGCCT 60.079 57.895 0.00 0.00 0.00 5.52
4590 5935 0.175760 GATGTCTCAGTTGCCGCCTA 59.824 55.000 0.00 0.00 0.00 3.93
4591 5936 0.176680 ATGTCTCAGTTGCCGCCTAG 59.823 55.000 0.00 0.00 0.00 3.02
4592 5937 1.811679 GTCTCAGTTGCCGCCTAGC 60.812 63.158 0.00 0.00 0.00 3.42
4593 5938 2.512515 CTCAGTTGCCGCCTAGCC 60.513 66.667 0.00 0.00 0.00 3.93
4594 5939 4.096003 TCAGTTGCCGCCTAGCCC 62.096 66.667 0.00 0.00 0.00 5.19
4595 5940 4.101448 CAGTTGCCGCCTAGCCCT 62.101 66.667 0.00 0.00 0.00 5.19
4596 5941 3.787001 AGTTGCCGCCTAGCCCTC 61.787 66.667 0.00 0.00 0.00 4.30
4597 5942 4.858680 GTTGCCGCCTAGCCCTCC 62.859 72.222 0.00 0.00 0.00 4.30
4693 6038 3.421386 GGGCCTTTCCTCCCTCCC 61.421 72.222 0.84 0.00 39.46 4.30
4694 6039 2.286502 GGCCTTTCCTCCCTCCCT 60.287 66.667 0.00 0.00 0.00 4.20
4695 6040 2.379459 GGCCTTTCCTCCCTCCCTC 61.379 68.421 0.00 0.00 0.00 4.30
4696 6041 2.736826 GCCTTTCCTCCCTCCCTCG 61.737 68.421 0.00 0.00 0.00 4.63
4697 6042 2.066999 CCTTTCCTCCCTCCCTCGG 61.067 68.421 0.00 0.00 0.00 4.63
4698 6043 1.001760 CTTTCCTCCCTCCCTCGGA 59.998 63.158 0.00 0.00 0.00 4.55
4699 6044 0.399233 CTTTCCTCCCTCCCTCGGAT 60.399 60.000 0.00 0.00 0.00 4.18
4700 6045 0.398664 TTTCCTCCCTCCCTCGGATC 60.399 60.000 0.00 0.00 0.00 3.36
4701 6046 1.297409 TTCCTCCCTCCCTCGGATCT 61.297 60.000 0.00 0.00 0.00 2.75
4702 6047 1.532794 CCTCCCTCCCTCGGATCTG 60.533 68.421 0.00 0.00 0.00 2.90
4703 6048 2.123251 TCCCTCCCTCGGATCTGC 60.123 66.667 0.00 0.00 0.00 4.26
4704 6049 3.610669 CCCTCCCTCGGATCTGCG 61.611 72.222 0.00 0.00 0.00 5.18
4705 6050 3.610669 CCTCCCTCGGATCTGCGG 61.611 72.222 3.34 3.34 0.00 5.69
4706 6051 3.610669 CTCCCTCGGATCTGCGGG 61.611 72.222 21.95 21.95 38.07 6.13
4709 6054 4.227134 CCTCGGATCTGCGGGGTG 62.227 72.222 2.29 0.00 0.00 4.61
4710 6055 4.899239 CTCGGATCTGCGGGGTGC 62.899 72.222 0.00 0.00 46.70 5.01
4730 6075 4.489771 CCCACCCCATCGCTCACC 62.490 72.222 0.00 0.00 0.00 4.02
4731 6076 3.402681 CCACCCCATCGCTCACCT 61.403 66.667 0.00 0.00 0.00 4.00
4732 6077 2.187946 CACCCCATCGCTCACCTC 59.812 66.667 0.00 0.00 0.00 3.85
4733 6078 3.083997 ACCCCATCGCTCACCTCC 61.084 66.667 0.00 0.00 0.00 4.30
4734 6079 3.866582 CCCCATCGCTCACCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
4735 6080 3.866582 CCCATCGCTCACCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
4736 6081 3.866582 CCATCGCTCACCTCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
4737 6082 2.765807 CATCGCTCACCTCCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
4738 6083 2.444895 ATCGCTCACCTCCCCCTC 60.445 66.667 0.00 0.00 0.00 4.30
4739 6084 3.015332 ATCGCTCACCTCCCCCTCT 62.015 63.158 0.00 0.00 0.00 3.69
4740 6085 3.465403 CGCTCACCTCCCCCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
4741 6086 3.791586 GCTCACCTCCCCCTCTGC 61.792 72.222 0.00 0.00 0.00 4.26
4742 6087 3.086600 CTCACCTCCCCCTCTGCC 61.087 72.222 0.00 0.00 0.00 4.85
4767 6112 4.467084 GTGATCGGCGCCAGGGAA 62.467 66.667 28.98 6.05 0.00 3.97
4768 6113 3.711814 TGATCGGCGCCAGGGAAA 61.712 61.111 28.98 5.88 0.00 3.13
4769 6114 2.897350 GATCGGCGCCAGGGAAAG 60.897 66.667 28.98 8.23 0.00 2.62
4781 6126 4.025401 GGAAAGCCCACGCGTGTG 62.025 66.667 34.81 26.99 46.00 3.82
4797 6142 4.776322 TGATGGTGGCGGCGGAAG 62.776 66.667 9.78 0.00 0.00 3.46
4808 6153 2.110006 GCGGAAGGCATCTCCTCC 59.890 66.667 0.00 0.00 46.94 4.30
4809 6154 2.825264 CGGAAGGCATCTCCTCCC 59.175 66.667 0.00 0.00 46.94 4.30
4810 6155 1.764054 CGGAAGGCATCTCCTCCCT 60.764 63.158 0.00 0.00 46.94 4.20
4811 6156 1.753368 CGGAAGGCATCTCCTCCCTC 61.753 65.000 0.00 0.00 46.94 4.30
4812 6157 1.414866 GGAAGGCATCTCCTCCCTCC 61.415 65.000 0.00 0.00 46.94 4.30
4813 6158 1.385206 AAGGCATCTCCTCCCTCCC 60.385 63.158 0.00 0.00 46.94 4.30
4814 6159 2.851588 GGCATCTCCTCCCTCCCC 60.852 72.222 0.00 0.00 0.00 4.81
4815 6160 2.851588 GCATCTCCTCCCTCCCCC 60.852 72.222 0.00 0.00 0.00 5.40
4816 6161 2.525381 CATCTCCTCCCTCCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
4817 6162 3.851184 ATCTCCTCCCTCCCCCGG 61.851 72.222 0.00 0.00 0.00 5.73
4819 6164 3.851184 CTCCTCCCTCCCCCGGAT 61.851 72.222 0.73 0.00 0.00 4.18
4820 6165 3.837213 CTCCTCCCTCCCCCGGATC 62.837 73.684 0.73 0.00 0.00 3.36
4821 6166 4.964241 CCTCCCTCCCCCGGATCC 62.964 77.778 0.73 0.00 0.00 3.36
4875 6220 4.424566 GGCTTGCGGTGGTGCATG 62.425 66.667 0.00 0.00 45.78 4.06
4876 6221 3.673484 GCTTGCGGTGGTGCATGT 61.673 61.111 0.00 0.00 45.78 3.21
4877 6222 2.256158 CTTGCGGTGGTGCATGTG 59.744 61.111 0.00 0.00 45.78 3.21
4878 6223 3.271706 CTTGCGGTGGTGCATGTGG 62.272 63.158 0.00 0.00 45.78 4.17
4881 6226 2.747460 CGGTGGTGCATGTGGGAG 60.747 66.667 0.00 0.00 0.00 4.30
4882 6227 3.064324 GGTGGTGCATGTGGGAGC 61.064 66.667 0.00 0.00 35.69 4.70
4883 6228 3.064324 GTGGTGCATGTGGGAGCC 61.064 66.667 0.00 0.00 33.99 4.70
4884 6229 3.259314 TGGTGCATGTGGGAGCCT 61.259 61.111 0.00 0.00 33.99 4.58
4885 6230 1.922881 TGGTGCATGTGGGAGCCTA 60.923 57.895 0.00 0.00 33.99 3.93
4886 6231 1.153086 GGTGCATGTGGGAGCCTAG 60.153 63.158 0.00 0.00 0.00 3.02
4887 6232 1.626356 GGTGCATGTGGGAGCCTAGA 61.626 60.000 0.00 0.00 0.00 2.43
4888 6233 0.471617 GTGCATGTGGGAGCCTAGAT 59.528 55.000 0.00 0.00 0.00 1.98
4889 6234 0.761187 TGCATGTGGGAGCCTAGATC 59.239 55.000 0.00 0.00 0.00 2.75
4890 6235 0.036022 GCATGTGGGAGCCTAGATCC 59.964 60.000 5.60 5.60 37.39 3.36
4891 6236 1.427809 CATGTGGGAGCCTAGATCCA 58.572 55.000 13.93 3.51 40.28 3.41
4892 6237 1.983691 CATGTGGGAGCCTAGATCCAT 59.016 52.381 13.93 0.00 40.28 3.41
4893 6238 1.427809 TGTGGGAGCCTAGATCCATG 58.572 55.000 13.93 0.00 40.28 3.66
4894 6239 0.689623 GTGGGAGCCTAGATCCATGG 59.310 60.000 4.97 4.97 40.28 3.66
4895 6240 0.567687 TGGGAGCCTAGATCCATGGA 59.432 55.000 18.88 18.88 40.28 3.41
4896 6241 1.274712 GGGAGCCTAGATCCATGGAG 58.725 60.000 21.33 7.10 40.28 3.86
4897 6242 1.484065 GGGAGCCTAGATCCATGGAGT 60.484 57.143 21.33 12.43 40.28 3.85
4898 6243 1.622811 GGAGCCTAGATCCATGGAGTG 59.377 57.143 21.33 9.51 38.12 3.51
4899 6244 2.324541 GAGCCTAGATCCATGGAGTGT 58.675 52.381 21.33 9.43 0.00 3.55
4900 6245 2.036992 GAGCCTAGATCCATGGAGTGTG 59.963 54.545 21.33 10.21 0.00 3.82
4901 6246 1.071385 GCCTAGATCCATGGAGTGTGG 59.929 57.143 21.33 18.93 38.11 4.17
4902 6247 1.696336 CCTAGATCCATGGAGTGTGGG 59.304 57.143 21.33 13.84 37.34 4.61
4903 6248 2.402564 CTAGATCCATGGAGTGTGGGT 58.597 52.381 21.33 0.15 37.34 4.51
4904 6249 1.207791 AGATCCATGGAGTGTGGGTC 58.792 55.000 21.33 10.77 45.38 4.46
4905 6250 1.207791 GATCCATGGAGTGTGGGTCT 58.792 55.000 21.33 0.00 42.43 3.85
4906 6251 1.561542 GATCCATGGAGTGTGGGTCTT 59.438 52.381 21.33 0.00 42.43 3.01
4907 6252 1.444933 TCCATGGAGTGTGGGTCTTT 58.555 50.000 11.44 0.00 37.34 2.52
4908 6253 1.351017 TCCATGGAGTGTGGGTCTTTC 59.649 52.381 11.44 0.00 37.34 2.62
4909 6254 1.442769 CATGGAGTGTGGGTCTTTCG 58.557 55.000 0.00 0.00 0.00 3.46
4910 6255 0.324943 ATGGAGTGTGGGTCTTTCGG 59.675 55.000 0.00 0.00 0.00 4.30
4911 6256 1.671379 GGAGTGTGGGTCTTTCGGC 60.671 63.158 0.00 0.00 0.00 5.54
4912 6257 1.070786 GAGTGTGGGTCTTTCGGCA 59.929 57.895 0.00 0.00 0.00 5.69
4913 6258 0.951040 GAGTGTGGGTCTTTCGGCAG 60.951 60.000 0.00 0.00 0.00 4.85
4914 6259 2.281484 TGTGGGTCTTTCGGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
4915 6260 3.423154 GTGGGTCTTTCGGCAGCG 61.423 66.667 0.00 0.00 0.00 5.18
4916 6261 3.936203 TGGGTCTTTCGGCAGCGT 61.936 61.111 0.00 0.00 0.00 5.07
4917 6262 3.423154 GGGTCTTTCGGCAGCGTG 61.423 66.667 0.00 0.00 0.00 5.34
4918 6263 2.357034 GGTCTTTCGGCAGCGTGA 60.357 61.111 0.00 0.00 0.00 4.35
4919 6264 1.741770 GGTCTTTCGGCAGCGTGAT 60.742 57.895 0.00 0.00 0.00 3.06
4920 6265 1.421485 GTCTTTCGGCAGCGTGATG 59.579 57.895 0.00 0.00 0.00 3.07
4921 6266 1.014044 GTCTTTCGGCAGCGTGATGA 61.014 55.000 0.00 0.00 0.00 2.92
4922 6267 1.014044 TCTTTCGGCAGCGTGATGAC 61.014 55.000 0.00 0.00 0.00 3.06
4923 6268 1.005037 TTTCGGCAGCGTGATGACT 60.005 52.632 0.00 0.00 0.00 3.41
4924 6269 1.014044 TTTCGGCAGCGTGATGACTC 61.014 55.000 0.00 0.00 0.00 3.36
4925 6270 2.835701 TTCGGCAGCGTGATGACTCC 62.836 60.000 0.00 0.00 0.00 3.85
4926 6271 2.512515 GGCAGCGTGATGACTCCC 60.513 66.667 0.00 0.00 0.00 4.30
4927 6272 2.887568 GCAGCGTGATGACTCCCG 60.888 66.667 0.00 0.00 0.00 5.14
4928 6273 2.202797 CAGCGTGATGACTCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
4929 6274 2.362503 AGCGTGATGACTCCCGGA 60.363 61.111 0.73 0.00 0.00 5.14
4930 6275 2.105128 GCGTGATGACTCCCGGAG 59.895 66.667 13.31 13.31 35.52 4.63
4944 6289 4.432741 GGAGGGGCAGCCTTGGAC 62.433 72.222 12.43 0.00 0.00 4.02
4945 6290 3.650950 GAGGGGCAGCCTTGGACA 61.651 66.667 12.43 0.00 0.00 4.02
4946 6291 3.185203 AGGGGCAGCCTTGGACAA 61.185 61.111 12.43 0.00 0.00 3.18
4947 6292 2.991540 GGGGCAGCCTTGGACAAC 60.992 66.667 12.43 0.00 0.00 3.32
4948 6293 3.365265 GGGCAGCCTTGGACAACG 61.365 66.667 12.43 0.00 0.00 4.10
4949 6294 4.043200 GGCAGCCTTGGACAACGC 62.043 66.667 3.29 0.00 0.00 4.84
4950 6295 4.043200 GCAGCCTTGGACAACGCC 62.043 66.667 3.05 0.00 0.00 5.68
4951 6296 3.726517 CAGCCTTGGACAACGCCG 61.727 66.667 3.05 0.00 0.00 6.46
4952 6297 4.250305 AGCCTTGGACAACGCCGT 62.250 61.111 3.05 0.00 0.00 5.68
4953 6298 4.025401 GCCTTGGACAACGCCGTG 62.025 66.667 0.00 0.00 0.00 4.94
4954 6299 3.353836 CCTTGGACAACGCCGTGG 61.354 66.667 0.00 0.00 0.00 4.94
4955 6300 3.353836 CTTGGACAACGCCGTGGG 61.354 66.667 0.00 0.00 0.00 4.61
4956 6301 4.178169 TTGGACAACGCCGTGGGT 62.178 61.111 0.00 0.00 0.00 4.51
4957 6302 4.612412 TGGACAACGCCGTGGGTC 62.612 66.667 12.33 12.33 0.00 4.46
4977 6322 3.554692 GCGGCGTGGATCTCGTTG 61.555 66.667 9.37 6.47 0.00 4.10
4978 6323 3.554692 CGGCGTGGATCTCGTTGC 61.555 66.667 0.00 1.41 0.00 4.17
4979 6324 2.125512 GGCGTGGATCTCGTTGCT 60.126 61.111 11.08 0.00 0.00 3.91
4980 6325 2.167861 GGCGTGGATCTCGTTGCTC 61.168 63.158 11.08 0.00 0.00 4.26
4981 6326 2.167861 GCGTGGATCTCGTTGCTCC 61.168 63.158 11.08 0.00 0.00 4.70
4982 6327 1.215382 CGTGGATCTCGTTGCTCCA 59.785 57.895 0.00 1.00 38.51 3.86
4983 6328 0.389817 CGTGGATCTCGTTGCTCCAA 60.390 55.000 5.61 0.00 41.95 3.53
4984 6329 1.740380 CGTGGATCTCGTTGCTCCAAT 60.740 52.381 5.61 0.00 41.95 3.16
4985 6330 1.936547 GTGGATCTCGTTGCTCCAATC 59.063 52.381 5.61 0.00 41.95 2.67
4986 6331 1.554617 TGGATCTCGTTGCTCCAATCA 59.445 47.619 0.00 0.00 37.95 2.57
4987 6332 2.171237 TGGATCTCGTTGCTCCAATCAT 59.829 45.455 0.00 0.00 37.95 2.45
4988 6333 3.209410 GGATCTCGTTGCTCCAATCATT 58.791 45.455 0.00 0.00 31.56 2.57
4989 6334 3.003068 GGATCTCGTTGCTCCAATCATTG 59.997 47.826 0.00 0.00 31.56 2.82
4990 6335 1.739466 TCTCGTTGCTCCAATCATTGC 59.261 47.619 0.00 0.00 0.00 3.56
4991 6336 0.447406 TCGTTGCTCCAATCATTGCG 59.553 50.000 0.00 0.00 0.00 4.85
4992 6337 0.523968 CGTTGCTCCAATCATTGCGG 60.524 55.000 0.00 0.00 0.00 5.69
4993 6338 0.810648 GTTGCTCCAATCATTGCGGA 59.189 50.000 0.00 0.00 0.00 5.54
4995 6340 0.749091 TGCTCCAATCATTGCGGAGG 60.749 55.000 14.59 0.00 45.45 4.30
4996 6341 0.464373 GCTCCAATCATTGCGGAGGA 60.464 55.000 14.59 0.00 45.45 3.71
4997 6342 2.018644 GCTCCAATCATTGCGGAGGAA 61.019 52.381 14.59 0.00 45.45 3.36
5005 6350 1.602237 TTGCGGAGGAATCTGGACC 59.398 57.895 0.00 0.00 28.51 4.46
5006 6351 0.909610 TTGCGGAGGAATCTGGACCT 60.910 55.000 0.00 0.00 39.41 3.85
5007 6352 1.144936 GCGGAGGAATCTGGACCTG 59.855 63.158 0.00 0.00 36.57 4.00
5008 6353 1.826024 CGGAGGAATCTGGACCTGG 59.174 63.158 0.00 0.00 36.57 4.45
5009 6354 1.690219 CGGAGGAATCTGGACCTGGG 61.690 65.000 0.00 0.00 36.57 4.45
5010 6355 1.529309 GAGGAATCTGGACCTGGGC 59.471 63.158 0.00 0.00 36.57 5.36
5011 6356 2.190578 GGAATCTGGACCTGGGCG 59.809 66.667 0.00 0.00 0.00 6.13
5012 6357 2.190578 GAATCTGGACCTGGGCGG 59.809 66.667 0.00 0.00 39.35 6.13
5013 6358 4.115199 AATCTGGACCTGGGCGGC 62.115 66.667 0.00 0.00 35.61 6.53
5034 6379 4.910585 CCCGGTAGGCATGGCGAC 62.911 72.222 21.87 21.87 35.76 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.299990 ACAGTAACTAAGATGTAGCTCAATCT 57.700 34.615 5.45 5.45 0.00 2.40
50 51 6.901081 AGGGAAAACCATCTAGAAAAACAG 57.099 37.500 0.00 0.00 43.89 3.16
64 66 4.322725 CCAATTCCAGCTTTAGGGAAAACC 60.323 45.833 7.29 0.00 45.63 3.27
65 67 4.283467 ACCAATTCCAGCTTTAGGGAAAAC 59.717 41.667 7.29 0.00 45.63 2.43
203 1011 5.585047 GCCGTGAGAATTCTACCAAGTAAAT 59.415 40.000 8.25 0.00 0.00 1.40
206 1014 3.767673 AGCCGTGAGAATTCTACCAAGTA 59.232 43.478 8.25 0.00 0.00 2.24
210 1018 4.021229 TCTTAGCCGTGAGAATTCTACCA 58.979 43.478 8.25 0.00 0.00 3.25
250 1058 6.183360 CGGATTTCCCTCTTTACCTCATTTTC 60.183 42.308 0.00 0.00 0.00 2.29
334 1142 5.402270 GGTTTCGGTTTTCAGTTTCATGATG 59.598 40.000 0.00 0.00 0.00 3.07
336 1144 4.399618 TGGTTTCGGTTTTCAGTTTCATGA 59.600 37.500 0.00 0.00 0.00 3.07
337 1145 4.502645 GTGGTTTCGGTTTTCAGTTTCATG 59.497 41.667 0.00 0.00 0.00 3.07
357 1181 2.482721 GGAGTGTGATTGTTTACCGTGG 59.517 50.000 0.00 0.00 0.00 4.94
363 1187 4.055360 CGTCACTGGAGTGTGATTGTTTA 58.945 43.478 6.68 0.00 46.77 2.01
366 1190 1.270305 CCGTCACTGGAGTGTGATTGT 60.270 52.381 6.68 0.00 46.77 2.71
369 1193 0.832135 ACCCGTCACTGGAGTGTGAT 60.832 55.000 6.68 0.00 46.77 3.06
456 1280 2.434331 GCCTGTGCCCCTGTTACA 59.566 61.111 0.00 0.00 0.00 2.41
712 1538 2.981859 ACGGAGAGAGAGAGAGAGAC 57.018 55.000 0.00 0.00 0.00 3.36
723 1549 1.764134 GAGAGGGAGACTACGGAGAGA 59.236 57.143 0.00 0.00 0.00 3.10
726 1552 1.766496 AGAGAGAGGGAGACTACGGAG 59.234 57.143 0.00 0.00 0.00 4.63
727 1553 1.487142 CAGAGAGAGGGAGACTACGGA 59.513 57.143 0.00 0.00 0.00 4.69
728 1554 1.210967 ACAGAGAGAGGGAGACTACGG 59.789 57.143 0.00 0.00 0.00 4.02
730 1556 3.454812 AGAGACAGAGAGAGGGAGACTAC 59.545 52.174 0.00 0.00 0.00 2.73
731 1557 3.709653 GAGAGACAGAGAGAGGGAGACTA 59.290 52.174 0.00 0.00 0.00 2.59
732 1558 2.505819 GAGAGACAGAGAGAGGGAGACT 59.494 54.545 0.00 0.00 0.00 3.24
733 1559 2.505819 AGAGAGACAGAGAGAGGGAGAC 59.494 54.545 0.00 0.00 0.00 3.36
1236 2084 2.202623 GGCTAGCAGTGTCGTCGG 60.203 66.667 18.24 0.00 0.00 4.79
1608 2456 6.896021 ATAATTCAGCAATCAAGGAGGATG 57.104 37.500 0.00 0.00 0.00 3.51
1721 2572 6.877611 ACAAGAACATTATTCGGAACAAGT 57.122 33.333 0.00 0.00 0.00 3.16
1724 2575 7.442969 ACAAGTACAAGAACATTATTCGGAACA 59.557 33.333 0.00 0.00 0.00 3.18
1725 2576 7.803724 ACAAGTACAAGAACATTATTCGGAAC 58.196 34.615 0.00 0.00 0.00 3.62
1799 2658 3.563390 GCTGTCATCCAAAGCTAAGGATC 59.437 47.826 15.07 7.67 42.61 3.36
1933 2917 5.254115 ACTGACCTAATCTAAGCAAAACCC 58.746 41.667 0.00 0.00 0.00 4.11
2089 3082 2.350388 CCAAGGTTGAACATGTACGCAC 60.350 50.000 0.00 0.00 0.00 5.34
2172 3171 1.003118 ACATCATGGGCGCCGTATATT 59.997 47.619 22.54 5.43 0.00 1.28
2226 3228 7.564793 ACTGTGAACTTTATGTATGCCTCATA 58.435 34.615 0.00 0.00 0.00 2.15
2334 3429 2.230025 CGGAGATGCCTATGTGTCCTAG 59.770 54.545 0.00 0.00 0.00 3.02
2445 3544 0.898320 ATCGATCCGTCCATCCATCC 59.102 55.000 0.00 0.00 0.00 3.51
2446 3545 1.134965 GGATCGATCCGTCCATCCATC 60.135 57.143 27.93 1.47 37.19 3.51
2447 3546 0.898320 GGATCGATCCGTCCATCCAT 59.102 55.000 27.93 0.00 37.19 3.41
2448 3547 2.351777 GGATCGATCCGTCCATCCA 58.648 57.895 27.93 0.00 37.19 3.41
2571 3670 1.339055 CGGATTCTCAACAGGCAGGAA 60.339 52.381 0.00 0.00 0.00 3.36
2572 3671 0.250234 CGGATTCTCAACAGGCAGGA 59.750 55.000 0.00 0.00 0.00 3.86
2575 3674 1.071542 TCAACGGATTCTCAACAGGCA 59.928 47.619 0.00 0.00 0.00 4.75
2879 3984 3.002656 ACGAAACATCTCTTGCAACAGTG 59.997 43.478 0.00 0.00 0.00 3.66
2905 4013 3.668447 GAGGAGAAGATGCAACAGTTCA 58.332 45.455 0.00 0.00 0.00 3.18
2940 4048 2.500098 TGTAGATGAAGTAGGGCACACC 59.500 50.000 0.00 0.00 40.67 4.16
2973 4089 4.223700 TCTCTCATTCCATTAGCACACAGT 59.776 41.667 0.00 0.00 0.00 3.55
2978 4094 4.023365 GCCAATCTCTCATTCCATTAGCAC 60.023 45.833 0.00 0.00 0.00 4.40
3104 4220 4.963953 CGCTACGTTGATTTTGAATGGATC 59.036 41.667 0.00 0.00 0.00 3.36
3175 4291 3.511146 GGAATGAAAGGAGATTGCCACAA 59.489 43.478 0.00 0.00 0.00 3.33
3207 4323 1.527034 GAACACTCCAGATTGCTGCA 58.473 50.000 0.00 0.00 40.91 4.41
3245 4361 3.880047 AACGGAATCCACTTACATCGA 57.120 42.857 0.00 0.00 0.00 3.59
3254 4370 3.816523 TCCAACAAACTAACGGAATCCAC 59.183 43.478 0.00 0.00 0.00 4.02
3270 4386 2.640826 AGAACGGAACCCTAATCCAACA 59.359 45.455 0.00 0.00 36.74 3.33
3282 4398 1.727335 GACAGCAGCTTAGAACGGAAC 59.273 52.381 0.00 0.00 0.00 3.62
3304 4424 0.173708 AACTAGCTAGGCACTCACGC 59.826 55.000 24.35 0.00 41.75 5.34
3305 4425 2.033550 CCTAACTAGCTAGGCACTCACG 59.966 54.545 24.35 4.33 41.75 4.35
3316 4436 3.028094 TGTCGGGAATCCTAACTAGCT 57.972 47.619 0.00 0.00 0.00 3.32
3398 4518 8.647796 TCACTTCTACTAGTTCTCAATCCAAAA 58.352 33.333 0.00 0.00 0.00 2.44
3463 4762 6.445357 TTTTTGCGGGATAGAAGGAATAAC 57.555 37.500 0.00 0.00 0.00 1.89
3538 4837 3.056821 GGGTCTTTACCTTTCATGGCAAC 60.057 47.826 0.00 0.00 45.95 4.17
3591 4900 8.235905 CGCTCTTAGTACTAAAAGAACTAGTGT 58.764 37.037 18.29 0.00 31.61 3.55
3609 4918 6.449448 AACTAAAAAGAACGACGCTCTTAG 57.551 37.500 13.49 10.07 32.77 2.18
3610 4919 6.833342 AAACTAAAAAGAACGACGCTCTTA 57.167 33.333 13.49 0.00 32.77 2.10
3611 4920 5.729974 AAACTAAAAAGAACGACGCTCTT 57.270 34.783 7.67 7.67 34.56 2.85
3636 4945 7.264221 TCGTGTACTAGACTGGTTTACAAAAA 58.736 34.615 0.00 0.00 0.00 1.94
3637 4946 6.804677 TCGTGTACTAGACTGGTTTACAAAA 58.195 36.000 0.00 0.00 0.00 2.44
3638 4947 6.039717 ACTCGTGTACTAGACTGGTTTACAAA 59.960 38.462 0.00 0.00 0.00 2.83
3680 4989 9.373603 TGCATAATGAAAATAACGTACTACAGT 57.626 29.630 0.00 0.00 0.00 3.55
3683 4992 9.512287 CGATGCATAATGAAAATAACGTACTAC 57.488 33.333 0.00 0.00 0.00 2.73
3686 4995 7.569297 TCCGATGCATAATGAAAATAACGTAC 58.431 34.615 0.00 0.00 0.00 3.67
3962 5281 1.796749 GCTGGAAGACGACGACGAC 60.797 63.158 15.32 8.08 43.06 4.34
3963 5282 1.964891 AGCTGGAAGACGACGACGA 60.965 57.895 15.32 0.00 43.06 4.20
3964 5283 1.797933 CAGCTGGAAGACGACGACG 60.798 63.158 5.57 5.58 45.75 5.12
3999 5318 4.864334 CTGCATGTCCGGGGAGCC 62.864 72.222 0.00 0.00 0.00 4.70
4005 5324 2.503061 CTCCTCCTGCATGTCCGG 59.497 66.667 0.00 0.00 0.00 5.14
4045 5364 3.495543 GCAGTAGGCAGCAGCTTC 58.504 61.111 0.00 0.00 43.97 3.86
4135 5454 7.066307 ACAAATATTGGAGCAAGAAAAAGGT 57.934 32.000 0.00 0.00 34.12 3.50
4153 5474 8.299570 GCAAAGAGATGGAGAGAAAAACAAATA 58.700 33.333 0.00 0.00 0.00 1.40
4305 5628 4.877323 TCTCTGCTACGTACATACACAG 57.123 45.455 0.00 0.00 0.00 3.66
4365 5702 4.449743 AGAAATTTTACGTACAGCTCGCAA 59.550 37.500 0.00 0.00 0.00 4.85
4399 5736 6.925610 AAACAAGAAAGGCTTCCATTTTTC 57.074 33.333 0.00 0.00 33.60 2.29
4407 5744 3.317993 TGGCAGTAAACAAGAAAGGCTTC 59.682 43.478 0.00 0.00 33.60 3.86
4418 5755 3.056891 GCCTTAAAGCATGGCAGTAAACA 60.057 43.478 0.00 0.00 44.96 2.83
4432 5771 7.025963 CAGAGTAAGCAATTTGAGCCTTAAAG 58.974 38.462 0.00 0.00 0.00 1.85
4436 5775 3.760684 CCAGAGTAAGCAATTTGAGCCTT 59.239 43.478 0.00 0.00 0.00 4.35
4439 5778 3.127721 GGTCCAGAGTAAGCAATTTGAGC 59.872 47.826 0.00 0.00 0.00 4.26
4445 5784 0.107654 GCCGGTCCAGAGTAAGCAAT 60.108 55.000 1.90 0.00 0.00 3.56
4467 5809 1.734655 AGAGTGTGACCAGAACCCAT 58.265 50.000 0.00 0.00 0.00 4.00
4472 5814 3.945921 CCGAGTATAGAGTGTGACCAGAA 59.054 47.826 0.00 0.00 0.00 3.02
4483 5825 5.239525 TCATGACATGACACCGAGTATAGAG 59.760 44.000 14.24 0.00 33.59 2.43
4484 5826 5.130350 TCATGACATGACACCGAGTATAGA 58.870 41.667 14.24 0.00 33.59 1.98
4518 5863 6.872920 AGAGGCAAACAAAAACATTAGTCAA 58.127 32.000 0.00 0.00 0.00 3.18
4519 5864 6.463995 AGAGGCAAACAAAAACATTAGTCA 57.536 33.333 0.00 0.00 0.00 3.41
4520 5865 7.591426 CACTAGAGGCAAACAAAAACATTAGTC 59.409 37.037 0.00 0.00 0.00 2.59
4521 5866 7.068226 ACACTAGAGGCAAACAAAAACATTAGT 59.932 33.333 0.00 0.00 0.00 2.24
4522 5867 7.425606 ACACTAGAGGCAAACAAAAACATTAG 58.574 34.615 0.00 0.00 0.00 1.73
4523 5868 7.341445 ACACTAGAGGCAAACAAAAACATTA 57.659 32.000 0.00 0.00 0.00 1.90
4524 5869 6.220726 ACACTAGAGGCAAACAAAAACATT 57.779 33.333 0.00 0.00 0.00 2.71
4525 5870 5.505654 CGACACTAGAGGCAAACAAAAACAT 60.506 40.000 0.00 0.00 0.00 2.71
4526 5871 4.201871 CGACACTAGAGGCAAACAAAAACA 60.202 41.667 0.00 0.00 0.00 2.83
4527 5872 4.279659 CGACACTAGAGGCAAACAAAAAC 58.720 43.478 0.00 0.00 0.00 2.43
4528 5873 3.242936 GCGACACTAGAGGCAAACAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
4529 5874 2.289547 GCGACACTAGAGGCAAACAAAA 59.710 45.455 0.00 0.00 0.00 2.44
4530 5875 1.871039 GCGACACTAGAGGCAAACAAA 59.129 47.619 0.00 0.00 0.00 2.83
4531 5876 1.508632 GCGACACTAGAGGCAAACAA 58.491 50.000 0.00 0.00 0.00 2.83
4532 5877 0.320421 GGCGACACTAGAGGCAAACA 60.320 55.000 0.00 0.00 0.00 2.83
4533 5878 1.019805 GGGCGACACTAGAGGCAAAC 61.020 60.000 0.00 0.00 0.00 2.93
4534 5879 1.295423 GGGCGACACTAGAGGCAAA 59.705 57.895 0.00 0.00 0.00 3.68
4535 5880 2.656069 GGGGCGACACTAGAGGCAA 61.656 63.158 0.00 0.00 0.00 4.52
4536 5881 3.075005 GGGGCGACACTAGAGGCA 61.075 66.667 0.00 0.00 0.00 4.75
4537 5882 3.851128 GGGGGCGACACTAGAGGC 61.851 72.222 0.00 0.00 0.00 4.70
4565 5910 0.320771 GCAACTGAGACATCCCGTGT 60.321 55.000 0.00 0.00 45.83 4.49
4566 5911 1.021390 GGCAACTGAGACATCCCGTG 61.021 60.000 0.00 0.00 0.00 4.94
4567 5912 1.296715 GGCAACTGAGACATCCCGT 59.703 57.895 0.00 0.00 0.00 5.28
4568 5913 1.811266 CGGCAACTGAGACATCCCG 60.811 63.158 0.00 0.00 0.00 5.14
4569 5914 2.109126 GCGGCAACTGAGACATCCC 61.109 63.158 0.00 0.00 0.00 3.85
4570 5915 2.109126 GGCGGCAACTGAGACATCC 61.109 63.158 3.07 0.00 0.00 3.51
4571 5916 0.175760 TAGGCGGCAACTGAGACATC 59.824 55.000 13.08 0.00 0.00 3.06
4572 5917 0.176680 CTAGGCGGCAACTGAGACAT 59.823 55.000 13.08 0.00 0.00 3.06
4573 5918 1.591703 CTAGGCGGCAACTGAGACA 59.408 57.895 13.08 0.00 0.00 3.41
4574 5919 1.811679 GCTAGGCGGCAACTGAGAC 60.812 63.158 13.08 0.00 0.00 3.36
4575 5920 2.579201 GCTAGGCGGCAACTGAGA 59.421 61.111 13.08 0.00 0.00 3.27
4576 5921 2.512515 GGCTAGGCGGCAACTGAG 60.513 66.667 13.08 0.99 38.25 3.35
4577 5922 4.096003 GGGCTAGGCGGCAACTGA 62.096 66.667 13.08 0.00 40.61 3.41
4578 5923 4.101448 AGGGCTAGGCGGCAACTG 62.101 66.667 13.08 0.00 40.61 3.16
4579 5924 3.787001 GAGGGCTAGGCGGCAACT 61.787 66.667 13.08 0.57 40.61 3.16
4580 5925 4.858680 GGAGGGCTAGGCGGCAAC 62.859 72.222 13.08 0.00 40.61 4.17
4630 5975 2.824071 CTTTGCCTGGCGCCAATCAC 62.824 60.000 32.09 19.52 36.24 3.06
4631 5976 2.599875 TTTGCCTGGCGCCAATCA 60.600 55.556 32.09 26.29 36.24 2.57
4632 5977 2.182537 CTTTGCCTGGCGCCAATC 59.817 61.111 32.09 23.96 36.24 2.67
4633 5978 4.073200 GCTTTGCCTGGCGCCAAT 62.073 61.111 32.09 0.00 36.24 3.16
4676 6021 3.421386 GGGAGGGAGGAAAGGCCC 61.421 72.222 0.00 0.00 45.04 5.80
4677 6022 2.286502 AGGGAGGGAGGAAAGGCC 60.287 66.667 0.00 0.00 0.00 5.19
4678 6023 2.736826 CGAGGGAGGGAGGAAAGGC 61.737 68.421 0.00 0.00 0.00 4.35
4679 6024 2.066999 CCGAGGGAGGGAGGAAAGG 61.067 68.421 0.00 0.00 0.00 3.11
4680 6025 0.399233 ATCCGAGGGAGGGAGGAAAG 60.399 60.000 0.00 0.00 36.91 2.62
4681 6026 0.398664 GATCCGAGGGAGGGAGGAAA 60.399 60.000 0.00 0.00 36.91 3.13
4682 6027 1.233369 GATCCGAGGGAGGGAGGAA 59.767 63.158 0.00 0.00 36.91 3.36
4683 6028 1.701757 AGATCCGAGGGAGGGAGGA 60.702 63.158 0.00 0.00 36.91 3.71
4684 6029 1.532794 CAGATCCGAGGGAGGGAGG 60.533 68.421 0.00 0.00 36.91 4.30
4685 6030 2.206536 GCAGATCCGAGGGAGGGAG 61.207 68.421 0.00 0.00 36.91 4.30
4686 6031 2.123251 GCAGATCCGAGGGAGGGA 60.123 66.667 0.00 0.00 34.05 4.20
4687 6032 3.610669 CGCAGATCCGAGGGAGGG 61.611 72.222 0.00 0.00 34.05 4.30
4688 6033 3.610669 CCGCAGATCCGAGGGAGG 61.611 72.222 0.00 0.00 34.05 4.30
4692 6037 4.227134 CACCCCGCAGATCCGAGG 62.227 72.222 0.00 0.00 31.80 4.63
4693 6038 4.899239 GCACCCCGCAGATCCGAG 62.899 72.222 0.00 0.00 41.79 4.63
4713 6058 4.489771 GGTGAGCGATGGGGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
4714 6059 3.391665 GAGGTGAGCGATGGGGTGG 62.392 68.421 0.00 0.00 0.00 4.61
4715 6060 2.187946 GAGGTGAGCGATGGGGTG 59.812 66.667 0.00 0.00 0.00 4.61
4716 6061 3.083997 GGAGGTGAGCGATGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
4717 6062 3.866582 GGGAGGTGAGCGATGGGG 61.867 72.222 0.00 0.00 0.00 4.96
4718 6063 3.866582 GGGGAGGTGAGCGATGGG 61.867 72.222 0.00 0.00 0.00 4.00
4719 6064 3.866582 GGGGGAGGTGAGCGATGG 61.867 72.222 0.00 0.00 0.00 3.51
4720 6065 2.765807 AGGGGGAGGTGAGCGATG 60.766 66.667 0.00 0.00 0.00 3.84
4721 6066 2.444895 GAGGGGGAGGTGAGCGAT 60.445 66.667 0.00 0.00 0.00 4.58
4722 6067 3.673597 AGAGGGGGAGGTGAGCGA 61.674 66.667 0.00 0.00 0.00 4.93
4723 6068 3.465403 CAGAGGGGGAGGTGAGCG 61.465 72.222 0.00 0.00 0.00 5.03
4724 6069 3.791586 GCAGAGGGGGAGGTGAGC 61.792 72.222 0.00 0.00 0.00 4.26
4725 6070 3.086600 GGCAGAGGGGGAGGTGAG 61.087 72.222 0.00 0.00 0.00 3.51
4750 6095 3.969250 TTTCCCTGGCGCCGATCAC 62.969 63.158 23.90 0.00 0.00 3.06
4751 6096 3.680620 CTTTCCCTGGCGCCGATCA 62.681 63.158 23.90 2.23 0.00 2.92
4752 6097 2.897350 CTTTCCCTGGCGCCGATC 60.897 66.667 23.90 0.00 0.00 3.69
4764 6109 4.025401 CACACGCGTGGGCTTTCC 62.025 66.667 39.21 0.00 39.64 3.13
4765 6110 2.325082 ATCACACGCGTGGGCTTTC 61.325 57.895 39.21 0.00 43.79 2.62
4766 6111 2.281484 ATCACACGCGTGGGCTTT 60.281 55.556 39.21 22.54 43.79 3.51
4767 6112 3.049674 CATCACACGCGTGGGCTT 61.050 61.111 39.21 25.03 43.79 4.35
4770 6115 3.422303 CACCATCACACGCGTGGG 61.422 66.667 39.21 37.28 43.79 4.61
4771 6116 3.422303 CCACCATCACACGCGTGG 61.422 66.667 39.21 28.05 43.79 4.94
4772 6117 4.088762 GCCACCATCACACGCGTG 62.089 66.667 35.99 35.99 45.08 5.34
4780 6125 4.776322 CTTCCGCCGCCACCATCA 62.776 66.667 0.00 0.00 0.00 3.07
4797 6142 2.851588 GGGGAGGGAGGAGATGCC 60.852 72.222 0.00 0.00 40.48 4.40
4798 6143 2.851588 GGGGGAGGGAGGAGATGC 60.852 72.222 0.00 0.00 0.00 3.91
4799 6144 2.525381 CGGGGGAGGGAGGAGATG 60.525 72.222 0.00 0.00 0.00 2.90
4800 6145 3.851184 CCGGGGGAGGGAGGAGAT 61.851 72.222 0.00 0.00 0.00 2.75
4802 6147 3.837213 GATCCGGGGGAGGGAGGAG 62.837 73.684 0.00 0.00 36.91 3.69
4803 6148 3.846254 GATCCGGGGGAGGGAGGA 61.846 72.222 0.00 0.00 36.91 3.71
4804 6149 4.964241 GGATCCGGGGGAGGGAGG 62.964 77.778 0.00 0.00 36.91 4.30
4858 6203 4.424566 CATGCACCACCGCAAGCC 62.425 66.667 0.00 0.00 46.87 4.35
4859 6204 3.673484 ACATGCACCACCGCAAGC 61.673 61.111 0.00 0.00 46.87 4.01
4860 6205 2.256158 CACATGCACCACCGCAAG 59.744 61.111 0.00 0.00 46.87 4.01
4861 6206 3.293714 CCACATGCACCACCGCAA 61.294 61.111 0.00 0.00 46.87 4.85
4864 6209 2.747460 CTCCCACATGCACCACCG 60.747 66.667 0.00 0.00 0.00 4.94
4865 6210 3.064324 GCTCCCACATGCACCACC 61.064 66.667 0.00 0.00 0.00 4.61
4866 6211 2.196997 TAGGCTCCCACATGCACCAC 62.197 60.000 0.00 0.00 0.00 4.16
4867 6212 1.913951 CTAGGCTCCCACATGCACCA 61.914 60.000 0.00 0.00 0.00 4.17
4868 6213 1.153086 CTAGGCTCCCACATGCACC 60.153 63.158 0.00 0.00 0.00 5.01
4869 6214 0.471617 ATCTAGGCTCCCACATGCAC 59.528 55.000 0.00 0.00 0.00 4.57
4870 6215 0.761187 GATCTAGGCTCCCACATGCA 59.239 55.000 0.00 0.00 0.00 3.96
4871 6216 0.036022 GGATCTAGGCTCCCACATGC 59.964 60.000 0.00 0.00 0.00 4.06
4872 6217 1.427809 TGGATCTAGGCTCCCACATG 58.572 55.000 9.09 0.00 31.32 3.21
4873 6218 1.983691 CATGGATCTAGGCTCCCACAT 59.016 52.381 9.09 0.00 31.32 3.21
4874 6219 1.427809 CATGGATCTAGGCTCCCACA 58.572 55.000 9.09 0.00 31.32 4.17
4875 6220 0.689623 CCATGGATCTAGGCTCCCAC 59.310 60.000 5.56 0.00 31.32 4.61
4876 6221 0.567687 TCCATGGATCTAGGCTCCCA 59.432 55.000 11.44 0.00 31.32 4.37
4877 6222 1.274712 CTCCATGGATCTAGGCTCCC 58.725 60.000 16.63 0.00 31.32 4.30
4878 6223 1.622811 CACTCCATGGATCTAGGCTCC 59.377 57.143 16.63 5.56 0.00 4.70
4879 6224 2.036992 CACACTCCATGGATCTAGGCTC 59.963 54.545 16.63 0.00 0.00 4.70
4880 6225 2.045524 CACACTCCATGGATCTAGGCT 58.954 52.381 16.63 0.00 0.00 4.58
4881 6226 1.071385 CCACACTCCATGGATCTAGGC 59.929 57.143 16.63 0.00 39.87 3.93
4882 6227 1.696336 CCCACACTCCATGGATCTAGG 59.304 57.143 16.63 14.77 39.87 3.02
4883 6228 2.366916 GACCCACACTCCATGGATCTAG 59.633 54.545 16.63 5.99 39.87 2.43
4884 6229 2.023015 AGACCCACACTCCATGGATCTA 60.023 50.000 16.63 0.00 39.87 1.98
4885 6230 1.207791 GACCCACACTCCATGGATCT 58.792 55.000 16.63 0.00 39.87 2.75
4886 6231 1.207791 AGACCCACACTCCATGGATC 58.792 55.000 16.63 8.08 39.87 3.36
4887 6232 1.673767 AAGACCCACACTCCATGGAT 58.326 50.000 16.63 2.66 39.87 3.41
4888 6233 1.351017 GAAAGACCCACACTCCATGGA 59.649 52.381 15.27 15.27 39.87 3.41
4889 6234 1.826385 GAAAGACCCACACTCCATGG 58.174 55.000 4.97 4.97 36.94 3.66
4890 6235 1.442769 CGAAAGACCCACACTCCATG 58.557 55.000 0.00 0.00 0.00 3.66
4891 6236 0.324943 CCGAAAGACCCACACTCCAT 59.675 55.000 0.00 0.00 0.00 3.41
4892 6237 1.752198 CCGAAAGACCCACACTCCA 59.248 57.895 0.00 0.00 0.00 3.86
4893 6238 1.671379 GCCGAAAGACCCACACTCC 60.671 63.158 0.00 0.00 0.00 3.85
4894 6239 0.951040 CTGCCGAAAGACCCACACTC 60.951 60.000 0.00 0.00 0.00 3.51
4895 6240 1.071471 CTGCCGAAAGACCCACACT 59.929 57.895 0.00 0.00 0.00 3.55
4896 6241 2.617274 GCTGCCGAAAGACCCACAC 61.617 63.158 0.00 0.00 0.00 3.82
4897 6242 2.281484 GCTGCCGAAAGACCCACA 60.281 61.111 0.00 0.00 0.00 4.17
4898 6243 3.423154 CGCTGCCGAAAGACCCAC 61.423 66.667 0.00 0.00 36.29 4.61
4899 6244 3.936203 ACGCTGCCGAAAGACCCA 61.936 61.111 0.00 0.00 38.29 4.51
4900 6245 3.423154 CACGCTGCCGAAAGACCC 61.423 66.667 0.00 0.00 38.29 4.46
4901 6246 1.741770 ATCACGCTGCCGAAAGACC 60.742 57.895 0.00 0.00 38.29 3.85
4902 6247 1.014044 TCATCACGCTGCCGAAAGAC 61.014 55.000 0.00 0.00 38.29 3.01
4903 6248 1.014044 GTCATCACGCTGCCGAAAGA 61.014 55.000 0.00 0.00 38.29 2.52
4904 6249 1.016130 AGTCATCACGCTGCCGAAAG 61.016 55.000 0.00 0.00 38.29 2.62
4905 6250 1.005037 AGTCATCACGCTGCCGAAA 60.005 52.632 0.00 0.00 38.29 3.46
4906 6251 1.446099 GAGTCATCACGCTGCCGAA 60.446 57.895 0.00 0.00 38.29 4.30
4907 6252 2.181777 GAGTCATCACGCTGCCGA 59.818 61.111 0.00 0.00 38.29 5.54
4908 6253 2.887568 GGAGTCATCACGCTGCCG 60.888 66.667 0.00 0.00 41.14 5.69
4909 6254 2.512515 GGGAGTCATCACGCTGCC 60.513 66.667 0.00 0.00 36.12 4.85
4927 6272 4.432741 GTCCAAGGCTGCCCCTCC 62.433 72.222 16.57 0.00 45.62 4.30
4928 6273 3.210012 TTGTCCAAGGCTGCCCCTC 62.210 63.158 16.57 2.63 45.62 4.30
4930 6275 2.991540 GTTGTCCAAGGCTGCCCC 60.992 66.667 16.57 0.00 0.00 5.80
4931 6276 3.365265 CGTTGTCCAAGGCTGCCC 61.365 66.667 16.57 0.00 0.00 5.36
4932 6277 4.043200 GCGTTGTCCAAGGCTGCC 62.043 66.667 11.65 11.65 45.57 4.85
4937 6282 3.353836 CCACGGCGTTGTCCAAGG 61.354 66.667 11.19 2.11 0.00 3.61
4938 6283 3.353836 CCCACGGCGTTGTCCAAG 61.354 66.667 11.19 0.00 0.00 3.61
4939 6284 4.178169 ACCCACGGCGTTGTCCAA 62.178 61.111 11.19 0.00 0.00 3.53
4940 6285 4.612412 GACCCACGGCGTTGTCCA 62.612 66.667 22.29 0.00 0.00 4.02
4960 6305 3.554692 CAACGAGATCCACGCCGC 61.555 66.667 9.32 0.00 0.00 6.53
4961 6306 3.554692 GCAACGAGATCCACGCCG 61.555 66.667 9.32 3.25 0.00 6.46
4962 6307 2.125512 AGCAACGAGATCCACGCC 60.126 61.111 9.32 0.52 0.00 5.68
4963 6308 3.389206 GAGCAACGAGATCCACGC 58.611 61.111 9.32 0.00 0.00 5.34
4968 6313 3.547613 GCAATGATTGGAGCAACGAGATC 60.548 47.826 7.35 0.00 0.00 2.75
4969 6314 2.357009 GCAATGATTGGAGCAACGAGAT 59.643 45.455 7.35 0.00 0.00 2.75
4970 6315 1.739466 GCAATGATTGGAGCAACGAGA 59.261 47.619 7.35 0.00 0.00 4.04
4971 6316 1.530441 CGCAATGATTGGAGCAACGAG 60.530 52.381 7.35 0.00 0.00 4.18
4972 6317 0.447406 CGCAATGATTGGAGCAACGA 59.553 50.000 7.35 0.00 0.00 3.85
4973 6318 0.523968 CCGCAATGATTGGAGCAACG 60.524 55.000 7.35 0.75 0.00 4.10
4974 6319 0.810648 TCCGCAATGATTGGAGCAAC 59.189 50.000 7.35 0.00 0.00 4.17
4975 6320 1.097232 CTCCGCAATGATTGGAGCAA 58.903 50.000 7.35 0.00 42.53 3.91
4976 6321 0.749091 CCTCCGCAATGATTGGAGCA 60.749 55.000 7.35 0.00 46.42 4.26
4977 6322 0.464373 TCCTCCGCAATGATTGGAGC 60.464 55.000 7.35 0.00 46.42 4.70
4979 6324 2.173356 AGATTCCTCCGCAATGATTGGA 59.827 45.455 7.35 0.00 0.00 3.53
4980 6325 2.292569 CAGATTCCTCCGCAATGATTGG 59.707 50.000 7.35 0.00 0.00 3.16
4981 6326 2.292569 CCAGATTCCTCCGCAATGATTG 59.707 50.000 0.00 0.00 0.00 2.67
4982 6327 2.173356 TCCAGATTCCTCCGCAATGATT 59.827 45.455 0.00 0.00 0.00 2.57
4983 6328 1.770658 TCCAGATTCCTCCGCAATGAT 59.229 47.619 0.00 0.00 0.00 2.45
4984 6329 1.134401 GTCCAGATTCCTCCGCAATGA 60.134 52.381 0.00 0.00 0.00 2.57
4985 6330 1.303309 GTCCAGATTCCTCCGCAATG 58.697 55.000 0.00 0.00 0.00 2.82
4986 6331 0.181350 GGTCCAGATTCCTCCGCAAT 59.819 55.000 0.00 0.00 0.00 3.56
4987 6332 0.909610 AGGTCCAGATTCCTCCGCAA 60.910 55.000 0.00 0.00 0.00 4.85
4988 6333 1.306141 AGGTCCAGATTCCTCCGCA 60.306 57.895 0.00 0.00 0.00 5.69
4989 6334 1.144936 CAGGTCCAGATTCCTCCGC 59.855 63.158 0.00 0.00 30.91 5.54
4990 6335 1.690219 CCCAGGTCCAGATTCCTCCG 61.690 65.000 0.00 0.00 30.91 4.63
4991 6336 1.988982 GCCCAGGTCCAGATTCCTCC 61.989 65.000 0.00 0.00 30.91 4.30
4992 6337 1.529309 GCCCAGGTCCAGATTCCTC 59.471 63.158 0.00 0.00 30.91 3.71
4993 6338 2.370445 CGCCCAGGTCCAGATTCCT 61.370 63.158 0.00 0.00 33.96 3.36
4994 6339 2.190578 CGCCCAGGTCCAGATTCC 59.809 66.667 0.00 0.00 0.00 3.01
4995 6340 2.190578 CCGCCCAGGTCCAGATTC 59.809 66.667 0.00 0.00 34.51 2.52
4996 6341 4.115199 GCCGCCCAGGTCCAGATT 62.115 66.667 0.00 0.00 43.70 2.40
5017 6362 4.910585 GTCGCCATGCCTACCGGG 62.911 72.222 6.32 0.00 38.36 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.