Multiple sequence alignment - TraesCS7D01G263700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263700 chr7D 100.000 5003 0 0 1 5003 244442205 244447207 0.000000e+00 9239.0
1 TraesCS7D01G263700 chr7D 80.645 527 89 11 132 653 538912828 538913346 3.630000e-106 396.0
2 TraesCS7D01G263700 chr7D 94.144 222 10 2 4457 4678 244446166 244445948 8.030000e-88 335.0
3 TraesCS7D01G263700 chr7D 94.521 219 9 2 3747 3962 244446879 244446661 8.030000e-88 335.0
4 TraesCS7D01G263700 chr7D 90.511 137 9 4 8 143 545504189 545504056 1.430000e-40 178.0
5 TraesCS7D01G263700 chr7A 91.056 3041 181 36 136 3164 259997652 260000613 0.000000e+00 4024.0
6 TraesCS7D01G263700 chr7A 88.801 1143 71 26 3188 4298 260001046 260002163 0.000000e+00 1349.0
7 TraesCS7D01G263700 chr7A 92.701 274 10 2 4696 4969 260002736 260002999 2.180000e-103 387.0
8 TraesCS7D01G263700 chr7A 93.281 253 11 3 4395 4647 260002251 260002497 7.910000e-98 368.0
9 TraesCS7D01G263700 chr7A 94.144 222 12 1 4457 4678 260001812 260001592 2.230000e-88 337.0
10 TraesCS7D01G263700 chr7A 93.158 190 8 2 3773 3962 260002497 260002313 1.770000e-69 274.0
11 TraesCS7D01G263700 chr7A 93.939 66 1 2 4634 4698 260002651 260002714 4.120000e-16 97.1
12 TraesCS7D01G263700 chr7A 100.000 35 0 0 4969 5003 260003014 260003048 1.160000e-06 65.8
13 TraesCS7D01G263700 chr7B 92.205 2104 99 22 2017 4111 219562994 219565041 0.000000e+00 2916.0
14 TraesCS7D01G263700 chr7B 93.436 777 34 3 1251 2024 219562052 219562814 0.000000e+00 1136.0
15 TraesCS7D01G263700 chr7B 86.052 803 44 35 4191 4969 219565273 219566031 0.000000e+00 800.0
16 TraesCS7D01G263700 chr7B 93.933 478 14 5 781 1258 219555974 219556436 0.000000e+00 708.0
17 TraesCS7D01G263700 chr7B 92.793 222 13 2 4457 4678 219564891 219564673 8.080000e-83 318.0
18 TraesCS7D01G263700 chr7B 92.661 218 10 4 3747 3962 219565723 219565510 4.860000e-80 309.0
19 TraesCS7D01G263700 chr7B 96.992 133 1 1 1 133 6905682 6905553 2.340000e-53 220.0
20 TraesCS7D01G263700 chr7B 95.312 64 3 0 4130 4193 219565087 219565150 8.860000e-18 102.0
21 TraesCS7D01G263700 chr7B 100.000 35 0 0 4969 5003 219566046 219566080 1.160000e-06 65.8
22 TraesCS7D01G263700 chr4A 80.312 640 110 15 138 768 109862920 109862288 2.110000e-128 470.0
23 TraesCS7D01G263700 chr5B 81.086 534 91 10 138 665 422549267 422549796 7.750000e-113 418.0
24 TraesCS7D01G263700 chr5B 78.435 575 112 12 136 704 633254471 633255039 1.020000e-96 364.0
25 TraesCS7D01G263700 chr1D 82.573 482 76 8 136 616 345429301 345429775 7.750000e-113 418.0
26 TraesCS7D01G263700 chr1D 81.459 329 45 9 1048 1372 484176694 484177010 6.430000e-64 255.0
27 TraesCS7D01G263700 chr1D 98.519 135 2 0 1 135 415462139 415462273 6.470000e-59 239.0
28 TraesCS7D01G263700 chr1D 100.000 29 0 0 112 140 389811565 389811537 3.000000e-03 54.7
29 TraesCS7D01G263700 chr3D 81.781 494 78 11 136 626 302226185 302226669 2.170000e-108 403.0
30 TraesCS7D01G263700 chr4D 78.268 635 114 14 136 762 47558172 47558790 2.180000e-103 387.0
31 TraesCS7D01G263700 chr4D 85.928 334 33 7 1051 1372 343456907 343456576 1.330000e-90 344.0
32 TraesCS7D01G263700 chr3B 79.923 518 93 11 140 655 418749331 418748823 2.200000e-98 370.0
33 TraesCS7D01G263700 chr6D 77.273 638 120 18 136 761 155244484 155243860 7.970000e-93 351.0
34 TraesCS7D01G263700 chr6D 94.505 91 5 0 1 91 285655077 285655167 1.880000e-29 141.0
35 TraesCS7D01G263700 chr2B 85.809 303 29 7 1082 1372 579875803 579875503 4.860000e-80 309.0
36 TraesCS7D01G263700 chr4B 97.744 133 3 0 1 133 378569293 378569425 3.900000e-56 230.0
37 TraesCS7D01G263700 chr5D 86.935 199 16 7 1051 1240 487565329 487565526 1.090000e-51 215.0
38 TraesCS7D01G263700 chr2A 93.571 140 9 0 1 140 480596879 480597018 5.080000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263700 chr7D 244442205 244447207 5002 False 9239.000000 9239 100.000000 1 5003 1 chr7D.!!$F1 5002
1 TraesCS7D01G263700 chr7D 538912828 538913346 518 False 396.000000 396 80.645000 132 653 1 chr7D.!!$F2 521
2 TraesCS7D01G263700 chr7D 244445948 244446879 931 True 335.000000 335 94.332500 3747 4678 2 chr7D.!!$R2 931
3 TraesCS7D01G263700 chr7A 259997652 260003048 5396 False 1048.483333 4024 93.296333 136 5003 6 chr7A.!!$F1 4867
4 TraesCS7D01G263700 chr7A 260001592 260002497 905 True 305.500000 337 93.651000 3773 4678 2 chr7A.!!$R1 905
5 TraesCS7D01G263700 chr7B 219562052 219566080 4028 False 1003.960000 2916 93.401000 1251 5003 5 chr7B.!!$F2 3752
6 TraesCS7D01G263700 chr7B 219564673 219565723 1050 True 313.500000 318 92.727000 3747 4678 2 chr7B.!!$R2 931
7 TraesCS7D01G263700 chr4A 109862288 109862920 632 True 470.000000 470 80.312000 138 768 1 chr4A.!!$R1 630
8 TraesCS7D01G263700 chr5B 422549267 422549796 529 False 418.000000 418 81.086000 138 665 1 chr5B.!!$F1 527
9 TraesCS7D01G263700 chr5B 633254471 633255039 568 False 364.000000 364 78.435000 136 704 1 chr5B.!!$F2 568
10 TraesCS7D01G263700 chr4D 47558172 47558790 618 False 387.000000 387 78.268000 136 762 1 chr4D.!!$F1 626
11 TraesCS7D01G263700 chr3B 418748823 418749331 508 True 370.000000 370 79.923000 140 655 1 chr3B.!!$R1 515
12 TraesCS7D01G263700 chr6D 155243860 155244484 624 True 351.000000 351 77.273000 136 761 1 chr6D.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.042581 TACCAGGCATGAGTCCAGGA 59.957 55.0 0.0 0.0 34.66 3.86 F
1296 1329 0.103572 ACGTCCAGGTACACACACAC 59.896 55.0 0.0 0.0 0.00 3.82 F
1886 1923 0.463654 TTGCAGACCAAAGCGTCAGT 60.464 50.0 0.0 0.0 35.07 3.41 F
1888 1925 0.880278 GCAGACCAAAGCGTCAGTGA 60.880 55.0 0.0 0.0 35.07 3.41 F
2721 2946 1.209128 GTGAGGCGATGACCATAACG 58.791 55.0 0.0 0.0 0.00 3.18 F
3727 4379 0.107214 CTCAGGGGTGTGTGTGTGTT 60.107 55.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1787 0.263172 AACACCAACCCCAATGACCA 59.737 50.0 0.00 0.00 0.00 4.02 R
2251 2476 0.317160 AAGAAGATCGGTCACACGCA 59.683 50.0 0.00 0.00 0.00 5.24 R
3021 3249 0.871722 GTATGCAAGTGAACCACGCA 59.128 50.0 0.00 0.00 39.64 5.24 R
3700 4352 0.883833 CACACCCCTGAGAAACATGC 59.116 55.0 0.00 0.00 0.00 4.06 R
3768 4420 1.091771 CCTCCCGCACATTACTGCAG 61.092 60.0 13.48 13.48 36.94 4.41 R
4819 6177 0.471617 AGGACCCATGCATGTCTAGC 59.528 55.0 24.58 9.36 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.489771 CCCGGCCAGGTCCACATC 62.490 72.222 2.24 0.00 38.74 3.06
20 21 4.489771 CCGGCCAGGTCCACATCC 62.490 72.222 2.24 0.00 34.51 3.51
21 22 3.716195 CGGCCAGGTCCACATCCA 61.716 66.667 2.24 0.00 0.00 3.41
22 23 2.763215 GGCCAGGTCCACATCCAA 59.237 61.111 0.00 0.00 0.00 3.53
23 24 1.076549 GGCCAGGTCCACATCCAAA 59.923 57.895 0.00 0.00 0.00 3.28
24 25 1.250840 GGCCAGGTCCACATCCAAAC 61.251 60.000 0.00 0.00 0.00 2.93
25 26 0.539438 GCCAGGTCCACATCCAAACA 60.539 55.000 0.00 0.00 0.00 2.83
26 27 1.247567 CCAGGTCCACATCCAAACAC 58.752 55.000 0.00 0.00 0.00 3.32
27 28 1.247567 CAGGTCCACATCCAAACACC 58.752 55.000 0.00 0.00 0.00 4.16
28 29 0.112412 AGGTCCACATCCAAACACCC 59.888 55.000 0.00 0.00 0.00 4.61
29 30 1.241315 GGTCCACATCCAAACACCCG 61.241 60.000 0.00 0.00 0.00 5.28
30 31 1.074072 TCCACATCCAAACACCCGG 59.926 57.895 0.00 0.00 0.00 5.73
31 32 1.228429 CCACATCCAAACACCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
32 33 1.523154 CCACATCCAAACACCCGGTG 61.523 60.000 16.47 16.47 39.75 4.94
33 34 1.901464 ACATCCAAACACCCGGTGC 60.901 57.895 17.99 0.00 36.98 5.01
34 35 1.900981 CATCCAAACACCCGGTGCA 60.901 57.895 17.99 0.00 36.98 4.57
35 36 1.901464 ATCCAAACACCCGGTGCAC 60.901 57.895 17.99 8.80 36.98 4.57
36 37 2.632602 ATCCAAACACCCGGTGCACA 62.633 55.000 20.43 0.00 36.98 4.57
37 38 2.411290 CAAACACCCGGTGCACAC 59.589 61.111 20.43 7.22 36.98 3.82
38 39 2.044848 AAACACCCGGTGCACACA 60.045 55.556 20.43 0.00 36.98 3.72
39 40 2.411504 AAACACCCGGTGCACACAC 61.412 57.895 20.43 0.00 46.66 3.82
47 48 3.289834 GTGCACACACCTGCCTGG 61.290 66.667 13.17 0.00 41.21 4.45
50 51 4.584518 CACACACCTGCCTGGCCA 62.585 66.667 17.53 4.71 40.22 5.36
51 52 4.275508 ACACACCTGCCTGGCCAG 62.276 66.667 26.87 26.87 40.22 4.85
61 62 2.674958 CCTGGCCAGGCAAAATTCT 58.325 52.632 38.39 0.00 42.44 2.40
62 63 0.978907 CCTGGCCAGGCAAAATTCTT 59.021 50.000 38.39 0.00 42.44 2.52
63 64 1.066645 CCTGGCCAGGCAAAATTCTTC 60.067 52.381 38.39 0.00 42.44 2.87
64 65 1.897802 CTGGCCAGGCAAAATTCTTCT 59.102 47.619 26.14 0.00 0.00 2.85
65 66 2.301009 CTGGCCAGGCAAAATTCTTCTT 59.699 45.455 26.14 0.00 0.00 2.52
66 67 3.505386 TGGCCAGGCAAAATTCTTCTTA 58.495 40.909 15.19 0.00 0.00 2.10
67 68 4.095946 TGGCCAGGCAAAATTCTTCTTAT 58.904 39.130 15.19 0.00 0.00 1.73
68 69 4.531732 TGGCCAGGCAAAATTCTTCTTATT 59.468 37.500 15.19 0.00 0.00 1.40
69 70 5.111989 GGCCAGGCAAAATTCTTCTTATTC 58.888 41.667 15.19 0.00 0.00 1.75
70 71 5.105187 GGCCAGGCAAAATTCTTCTTATTCT 60.105 40.000 15.19 0.00 0.00 2.40
71 72 6.038985 GCCAGGCAAAATTCTTCTTATTCTC 58.961 40.000 6.55 0.00 0.00 2.87
72 73 6.350445 GCCAGGCAAAATTCTTCTTATTCTCA 60.350 38.462 6.55 0.00 0.00 3.27
73 74 7.605449 CCAGGCAAAATTCTTCTTATTCTCAA 58.395 34.615 0.00 0.00 0.00 3.02
74 75 7.758528 CCAGGCAAAATTCTTCTTATTCTCAAG 59.241 37.037 0.00 0.00 0.00 3.02
75 76 7.275123 CAGGCAAAATTCTTCTTATTCTCAAGC 59.725 37.037 0.00 0.00 0.00 4.01
76 77 6.533012 GGCAAAATTCTTCTTATTCTCAAGCC 59.467 38.462 0.00 0.00 0.00 4.35
77 78 7.092716 GCAAAATTCTTCTTATTCTCAAGCCA 58.907 34.615 0.00 0.00 0.00 4.75
78 79 7.599998 GCAAAATTCTTCTTATTCTCAAGCCAA 59.400 33.333 0.00 0.00 0.00 4.52
79 80 8.919661 CAAAATTCTTCTTATTCTCAAGCCAAC 58.080 33.333 0.00 0.00 0.00 3.77
80 81 7.765695 AATTCTTCTTATTCTCAAGCCAACA 57.234 32.000 0.00 0.00 0.00 3.33
81 82 6.560253 TTCTTCTTATTCTCAAGCCAACAC 57.440 37.500 0.00 0.00 0.00 3.32
82 83 5.003804 TCTTCTTATTCTCAAGCCAACACC 58.996 41.667 0.00 0.00 0.00 4.16
83 84 4.365514 TCTTATTCTCAAGCCAACACCA 57.634 40.909 0.00 0.00 0.00 4.17
84 85 4.326826 TCTTATTCTCAAGCCAACACCAG 58.673 43.478 0.00 0.00 0.00 4.00
85 86 1.915141 ATTCTCAAGCCAACACCAGG 58.085 50.000 0.00 0.00 0.00 4.45
95 96 3.405823 CCAACACCAGGCATGAAAATT 57.594 42.857 0.00 0.00 0.00 1.82
96 97 3.742385 CCAACACCAGGCATGAAAATTT 58.258 40.909 0.00 0.00 0.00 1.82
97 98 4.136051 CCAACACCAGGCATGAAAATTTT 58.864 39.130 2.28 2.28 0.00 1.82
98 99 5.303971 CCAACACCAGGCATGAAAATTTTA 58.696 37.500 2.75 0.00 0.00 1.52
99 100 5.179182 CCAACACCAGGCATGAAAATTTTAC 59.821 40.000 2.75 0.00 0.00 2.01
100 101 4.893608 ACACCAGGCATGAAAATTTTACC 58.106 39.130 2.75 3.78 0.00 2.85
101 102 4.346418 ACACCAGGCATGAAAATTTTACCA 59.654 37.500 2.75 0.00 0.00 3.25
102 103 4.931002 CACCAGGCATGAAAATTTTACCAG 59.069 41.667 2.75 1.06 0.00 4.00
103 104 4.020307 ACCAGGCATGAAAATTTTACCAGG 60.020 41.667 15.68 15.68 0.00 4.45
104 105 3.934579 CAGGCATGAAAATTTTACCAGGC 59.065 43.478 16.53 16.53 35.83 4.85
105 106 3.582208 AGGCATGAAAATTTTACCAGGCA 59.418 39.130 22.61 9.83 37.97 4.75
106 107 4.225717 AGGCATGAAAATTTTACCAGGCAT 59.774 37.500 22.61 16.68 37.97 4.40
107 108 4.333372 GGCATGAAAATTTTACCAGGCATG 59.667 41.667 22.61 19.97 37.97 4.06
108 109 5.177326 GCATGAAAATTTTACCAGGCATGA 58.823 37.500 22.44 0.00 36.48 3.07
109 110 5.292589 GCATGAAAATTTTACCAGGCATGAG 59.707 40.000 22.44 6.60 36.48 2.90
110 111 6.400568 CATGAAAATTTTACCAGGCATGAGT 58.599 36.000 17.00 0.00 35.20 3.41
111 112 6.024552 TGAAAATTTTACCAGGCATGAGTC 57.975 37.500 2.75 0.00 0.00 3.36
112 113 5.047377 TGAAAATTTTACCAGGCATGAGTCC 60.047 40.000 2.75 0.00 0.00 3.85
113 114 3.737559 ATTTTACCAGGCATGAGTCCA 57.262 42.857 0.00 0.00 0.00 4.02
114 115 2.787473 TTTACCAGGCATGAGTCCAG 57.213 50.000 0.00 0.00 0.00 3.86
115 116 0.911769 TTACCAGGCATGAGTCCAGG 59.088 55.000 0.00 0.00 36.44 4.45
116 117 0.042581 TACCAGGCATGAGTCCAGGA 59.957 55.000 0.00 0.00 34.66 3.86
117 118 1.222936 CCAGGCATGAGTCCAGGAC 59.777 63.158 12.25 12.25 32.51 3.85
118 119 1.556373 CCAGGCATGAGTCCAGGACA 61.556 60.000 22.31 1.86 33.80 4.02
119 120 0.325933 CAGGCATGAGTCCAGGACAA 59.674 55.000 22.31 9.86 33.80 3.18
120 121 0.617413 AGGCATGAGTCCAGGACAAG 59.383 55.000 22.31 9.03 33.80 3.16
121 122 0.615331 GGCATGAGTCCAGGACAAGA 59.385 55.000 22.31 5.04 34.60 3.02
122 123 1.003580 GGCATGAGTCCAGGACAAGAA 59.996 52.381 22.31 4.26 34.60 2.52
123 124 2.079925 GCATGAGTCCAGGACAAGAAC 58.920 52.381 22.31 4.36 34.60 3.01
124 125 2.704572 CATGAGTCCAGGACAAGAACC 58.295 52.381 22.31 4.12 34.60 3.62
125 126 1.801242 TGAGTCCAGGACAAGAACCA 58.199 50.000 22.31 6.55 34.60 3.67
126 127 2.123589 TGAGTCCAGGACAAGAACCAA 58.876 47.619 22.31 0.00 34.60 3.67
127 128 2.507886 TGAGTCCAGGACAAGAACCAAA 59.492 45.455 22.31 0.00 34.60 3.28
128 129 2.879026 GAGTCCAGGACAAGAACCAAAC 59.121 50.000 22.31 0.00 34.60 2.93
129 130 2.509964 AGTCCAGGACAAGAACCAAACT 59.490 45.455 22.31 0.00 34.60 2.66
130 131 3.714798 AGTCCAGGACAAGAACCAAACTA 59.285 43.478 22.31 0.00 34.60 2.24
131 132 4.065789 GTCCAGGACAAGAACCAAACTAG 58.934 47.826 15.43 0.00 32.09 2.57
132 133 2.814336 CCAGGACAAGAACCAAACTAGC 59.186 50.000 0.00 0.00 0.00 3.42
133 134 2.814336 CAGGACAAGAACCAAACTAGCC 59.186 50.000 0.00 0.00 0.00 3.93
134 135 2.160205 GGACAAGAACCAAACTAGCCC 58.840 52.381 0.00 0.00 0.00 5.19
148 149 2.507110 TAGCCCGCAGTGCAAGAGAC 62.507 60.000 16.83 0.00 0.00 3.36
186 188 4.517453 GCTTGTGTTGTGGTATGGAGTTTA 59.483 41.667 0.00 0.00 0.00 2.01
197 199 1.707106 TGGAGTTTAGTCGGGTGTGA 58.293 50.000 0.00 0.00 0.00 3.58
198 200 2.253610 TGGAGTTTAGTCGGGTGTGAT 58.746 47.619 0.00 0.00 0.00 3.06
202 204 0.892755 TTTAGTCGGGTGTGATCGCT 59.107 50.000 7.94 0.00 0.00 4.93
255 259 4.024143 GTGTGTCAATGCGCGGCA 62.024 61.111 8.83 7.01 44.86 5.69
363 383 1.154073 GTCCCGTCTAGTCACACGC 60.154 63.158 0.00 0.00 34.58 5.34
381 401 3.483954 CCTCCGGCATTGAACAGAT 57.516 52.632 0.00 0.00 0.00 2.90
450 470 1.461127 CTTCAGTTACGGAAGCAGTGC 59.539 52.381 11.81 7.13 35.77 4.40
452 472 2.027625 AGTTACGGAAGCAGTGCGC 61.028 57.895 10.00 0.00 46.55 6.09
486 506 2.494059 CTGACCCGTCTTCAATGTTGT 58.506 47.619 0.00 0.00 0.00 3.32
495 515 1.491505 TTCAATGTTGTGCGACGCGA 61.492 50.000 15.93 0.62 0.00 5.87
502 522 0.179148 TTGTGCGACGCGATCTACAT 60.179 50.000 15.93 0.00 0.00 2.29
666 691 5.076182 TGCAGGAAAATCACATCCAAACTA 58.924 37.500 0.00 0.00 38.23 2.24
674 699 7.707624 AAATCACATCCAAACTACATCACAT 57.292 32.000 0.00 0.00 0.00 3.21
678 703 5.879777 CACATCCAAACTACATCACATACCA 59.120 40.000 0.00 0.00 0.00 3.25
704 729 0.605319 GCCCGTGTTGGATGACTTCA 60.605 55.000 0.00 0.00 42.00 3.02
710 735 4.055360 CGTGTTGGATGACTTCAGTTGTA 58.945 43.478 0.00 0.00 0.00 2.41
714 739 2.000447 GGATGACTTCAGTTGTACCGC 59.000 52.381 0.00 0.00 0.00 5.68
729 754 1.445582 CCGCACAACTAGGTCCGAC 60.446 63.158 0.00 0.00 0.00 4.79
744 771 2.106683 CGACCATGCGGGAGGTTTC 61.107 63.158 0.60 0.00 38.50 2.78
768 800 1.450312 CGTTGGAGATGCCCTGACC 60.450 63.158 0.00 0.00 34.97 4.02
769 801 1.077429 GTTGGAGATGCCCTGACCC 60.077 63.158 0.00 0.00 34.97 4.46
770 802 1.229951 TTGGAGATGCCCTGACCCT 60.230 57.895 0.00 0.00 34.97 4.34
771 803 1.274703 TTGGAGATGCCCTGACCCTC 61.275 60.000 0.00 0.00 34.97 4.30
772 804 1.690633 GGAGATGCCCTGACCCTCA 60.691 63.158 0.00 0.00 0.00 3.86
773 805 1.524482 GAGATGCCCTGACCCTCAC 59.476 63.158 0.00 0.00 0.00 3.51
779 811 3.775654 CCTGACCCTCACGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
802 834 4.385643 CCGGAATATGCCCAGAATATCCAT 60.386 45.833 0.00 0.00 0.00 3.41
824 856 1.069513 TCCACCGAATAATACCCGCAG 59.930 52.381 0.00 0.00 0.00 5.18
838 870 1.521010 CGCAGCACAGAGGGATCAG 60.521 63.158 0.00 0.00 0.00 2.90
917 949 9.503427 GTGTCTAAAAATATTCAAATTCTCCCG 57.497 33.333 0.00 0.00 0.00 5.14
950 982 2.202395 GCAAGTGGCAAAGCAGGGA 61.202 57.895 0.00 0.00 43.97 4.20
972 1005 5.478407 GAGAAAGAACAGAGGAGAAAGAGG 58.522 45.833 0.00 0.00 0.00 3.69
1296 1329 0.103572 ACGTCCAGGTACACACACAC 59.896 55.000 0.00 0.00 0.00 3.82
1356 1393 2.127251 CGCAATTGATACGCTGCTAGA 58.873 47.619 10.34 0.00 32.52 2.43
1437 1474 2.296752 TGTGGTTGATTGAGCAATGTGG 59.703 45.455 0.00 0.00 0.00 4.17
1510 1547 5.984233 GGACAAATCCTTTTTGTGGAAAC 57.016 39.130 8.32 0.00 42.11 2.78
1531 1568 3.709653 ACTGGATGTGGTAATCGTATGGT 59.290 43.478 0.00 0.00 0.00 3.55
1532 1569 4.163458 ACTGGATGTGGTAATCGTATGGTT 59.837 41.667 0.00 0.00 0.00 3.67
1533 1570 4.447290 TGGATGTGGTAATCGTATGGTTG 58.553 43.478 0.00 0.00 0.00 3.77
1534 1571 3.813166 GGATGTGGTAATCGTATGGTTGG 59.187 47.826 0.00 0.00 0.00 3.77
1535 1572 4.443739 GGATGTGGTAATCGTATGGTTGGA 60.444 45.833 0.00 0.00 0.00 3.53
1536 1573 4.764050 TGTGGTAATCGTATGGTTGGAT 57.236 40.909 0.00 0.00 0.00 3.41
1537 1574 4.699637 TGTGGTAATCGTATGGTTGGATC 58.300 43.478 0.00 0.00 0.00 3.36
1538 1575 4.162509 TGTGGTAATCGTATGGTTGGATCA 59.837 41.667 0.00 0.00 0.00 2.92
1539 1576 4.750098 GTGGTAATCGTATGGTTGGATCAG 59.250 45.833 0.00 0.00 0.00 2.90
1540 1577 4.202315 TGGTAATCGTATGGTTGGATCAGG 60.202 45.833 0.00 0.00 0.00 3.86
1551 1588 4.019174 GGTTGGATCAGGACATGAATTGT 58.981 43.478 0.00 0.00 42.53 2.71
1562 1599 5.045215 GGACATGAATTGTAATGTGCCATG 58.955 41.667 0.00 0.00 38.70 3.66
1598 1635 4.774726 TCTCTCTCTGAAGTAACCAAGCAT 59.225 41.667 0.00 0.00 0.00 3.79
1675 1712 5.009010 GCAATGCAGTTATATTGTAGCCTGT 59.991 40.000 0.00 0.00 36.81 4.00
1733 1770 5.367937 AGATGCAAATGACCAGACTAGGTAT 59.632 40.000 0.00 0.00 43.38 2.73
1750 1787 2.550978 GTATAGCAGCCACGTTGTGAT 58.449 47.619 0.00 0.00 35.23 3.06
1754 1791 1.868997 CAGCCACGTTGTGATGGTC 59.131 57.895 0.00 0.00 38.34 4.02
1765 1802 1.185315 GTGATGGTCATTGGGGTTGG 58.815 55.000 0.00 0.00 0.00 3.77
1775 1812 2.943036 TTGGGGTTGGTGTTCTCTAC 57.057 50.000 0.00 0.00 0.00 2.59
1776 1813 1.061546 TGGGGTTGGTGTTCTCTACC 58.938 55.000 0.00 0.00 38.71 3.18
1783 1820 1.272490 TGGTGTTCTCTACCGCTCAAG 59.728 52.381 0.00 0.00 41.18 3.02
1868 1905 2.957402 TCCACTGCAAGGAGTCATTT 57.043 45.000 3.51 0.00 39.30 2.32
1881 1918 1.267806 AGTCATTTGCAGACCAAAGCG 59.732 47.619 1.23 0.00 45.87 4.68
1886 1923 0.463654 TTGCAGACCAAAGCGTCAGT 60.464 50.000 0.00 0.00 35.07 3.41
1888 1925 0.880278 GCAGACCAAAGCGTCAGTGA 60.880 55.000 0.00 0.00 35.07 3.41
1899 1936 1.663643 GCGTCAGTGAAATCGGCAATA 59.336 47.619 0.00 0.00 0.00 1.90
1902 1939 1.933181 TCAGTGAAATCGGCAATAGCG 59.067 47.619 0.00 0.00 43.41 4.26
1954 1991 1.878953 TGAAAACTGGCGGTTCTCTC 58.121 50.000 12.95 10.08 37.12 3.20
2150 2374 7.807977 TGTCCTTTTCATCCATTCTTATAGC 57.192 36.000 0.00 0.00 0.00 2.97
2159 2383 7.609960 TCATCCATTCTTATAGCTGTCATCTC 58.390 38.462 0.00 0.00 0.00 2.75
2251 2476 4.832266 TGTGCAGGAGGTTTTGTATGAAAT 59.168 37.500 0.00 0.00 0.00 2.17
2456 2681 2.832838 TGGAAGATGGCAGAGTCCTTA 58.167 47.619 12.64 0.00 0.00 2.69
2573 2798 8.204160 AGTTTGATGACAACATTATCTATCCGA 58.796 33.333 0.00 0.00 36.82 4.55
2631 2856 5.885230 CAAGTATGGATTGCTCTTGTTCA 57.115 39.130 0.00 0.00 33.27 3.18
2632 2857 6.446781 CAAGTATGGATTGCTCTTGTTCAT 57.553 37.500 0.00 0.00 33.27 2.57
2633 2858 6.860080 CAAGTATGGATTGCTCTTGTTCATT 58.140 36.000 0.00 0.00 33.27 2.57
2634 2859 7.318141 CAAGTATGGATTGCTCTTGTTCATTT 58.682 34.615 0.00 0.00 33.27 2.32
2635 2860 8.461222 CAAGTATGGATTGCTCTTGTTCATTTA 58.539 33.333 0.00 0.00 33.27 1.40
2636 2861 8.579850 AGTATGGATTGCTCTTGTTCATTTAA 57.420 30.769 0.00 0.00 0.00 1.52
2637 2862 9.193806 AGTATGGATTGCTCTTGTTCATTTAAT 57.806 29.630 0.00 0.00 0.00 1.40
2676 2901 9.663904 CTTGTTCATTTAATATGGTATCGGTTG 57.336 33.333 0.00 0.00 0.00 3.77
2721 2946 1.209128 GTGAGGCGATGACCATAACG 58.791 55.000 0.00 0.00 0.00 3.18
2761 2986 4.215109 AGGTTGTTTTTCAGTATGCTGGT 58.785 39.130 11.15 0.00 42.78 4.00
3021 3249 3.253220 TGGGGAACAATGTGGTAGTAGT 58.747 45.455 0.00 0.00 0.00 2.73
3059 3287 6.257849 TGCATACGAGTATTGAGGATGTTTTC 59.742 38.462 0.00 0.00 0.00 2.29
3068 3296 2.376518 TGAGGATGTTTTCTGCTCCCTT 59.623 45.455 0.00 0.00 0.00 3.95
3085 3313 3.260884 TCCCTTGTTACAGCAAGTAGGAG 59.739 47.826 0.50 0.00 43.03 3.69
3173 3821 6.525629 AGGCATAAGCGTACTCTTAAATCAT 58.474 36.000 9.26 0.00 43.41 2.45
3321 3972 4.222124 ACAGACAACTTCAGTCCAAACT 57.778 40.909 0.00 0.00 36.68 2.66
3376 4027 6.523201 GTGATGTGGAATTACACGATTTTGAC 59.477 38.462 16.02 2.42 44.21 3.18
3387 4038 4.443394 ACACGATTTTGACGTCTGTAGTTC 59.557 41.667 17.92 5.56 42.07 3.01
3388 4039 3.667261 ACGATTTTGACGTCTGTAGTTCG 59.333 43.478 17.92 17.84 39.87 3.95
3389 4040 3.059044 CGATTTTGACGTCTGTAGTTCGG 59.941 47.826 17.92 0.00 0.00 4.30
3390 4041 3.441496 TTTTGACGTCTGTAGTTCGGT 57.559 42.857 17.92 0.00 0.00 4.69
3391 4042 4.566545 TTTTGACGTCTGTAGTTCGGTA 57.433 40.909 17.92 0.00 0.00 4.02
3392 4043 3.818961 TTGACGTCTGTAGTTCGGTAG 57.181 47.619 17.92 0.00 0.00 3.18
3393 4044 2.771089 TGACGTCTGTAGTTCGGTAGT 58.229 47.619 17.92 0.00 0.00 2.73
3394 4045 3.141398 TGACGTCTGTAGTTCGGTAGTT 58.859 45.455 17.92 0.00 0.00 2.24
3395 4046 3.187227 TGACGTCTGTAGTTCGGTAGTTC 59.813 47.826 17.92 0.00 0.00 3.01
3410 4061 9.983804 GTTCGGTAGTTCCTAATTTGAATAAAG 57.016 33.333 0.00 0.00 0.00 1.85
3456 4107 9.698309 ACATACATACTTCAGCACTATTGTATC 57.302 33.333 0.00 0.00 0.00 2.24
3551 4203 3.386078 ACTCACTCGACAATGCTATCCAT 59.614 43.478 0.00 0.00 35.06 3.41
3714 4366 1.236616 TGCGTGCATGTTTCTCAGGG 61.237 55.000 7.93 0.00 0.00 4.45
3721 4373 1.881973 CATGTTTCTCAGGGGTGTGTG 59.118 52.381 0.00 0.00 0.00 3.82
3722 4374 0.916086 TGTTTCTCAGGGGTGTGTGT 59.084 50.000 0.00 0.00 0.00 3.72
3724 4376 0.916086 TTTCTCAGGGGTGTGTGTGT 59.084 50.000 0.00 0.00 0.00 3.72
3725 4377 0.180171 TTCTCAGGGGTGTGTGTGTG 59.820 55.000 0.00 0.00 0.00 3.82
3726 4378 0.980754 TCTCAGGGGTGTGTGTGTGT 60.981 55.000 0.00 0.00 0.00 3.72
3727 4379 0.107214 CTCAGGGGTGTGTGTGTGTT 60.107 55.000 0.00 0.00 0.00 3.32
3728 4380 0.107410 TCAGGGGTGTGTGTGTGTTC 60.107 55.000 0.00 0.00 0.00 3.18
3729 4381 0.107214 CAGGGGTGTGTGTGTGTTCT 60.107 55.000 0.00 0.00 0.00 3.01
3730 4382 1.140052 CAGGGGTGTGTGTGTGTTCTA 59.860 52.381 0.00 0.00 0.00 2.10
3768 4420 5.596836 TTCCTGGATTTATTGGTTGCATC 57.403 39.130 0.00 0.00 0.00 3.91
3852 4506 4.014569 TGATCTAGTGGAGGAGATCTCG 57.985 50.000 16.46 0.34 45.60 4.04
3885 4540 4.762251 GCAGATTTCAGTAAACCAGACCTT 59.238 41.667 0.00 0.00 0.00 3.50
4020 4676 9.121658 CCACACTGAAGATAGATACAGTAGTAA 57.878 37.037 0.00 0.00 40.84 2.24
4032 4688 8.596781 AGATACAGTAGTAACCAAGATTGTCT 57.403 34.615 0.00 0.00 33.13 3.41
4039 4695 4.995487 AGTAACCAAGATTGTCTCGGTTTC 59.005 41.667 7.56 3.49 40.38 2.78
4040 4696 3.485463 ACCAAGATTGTCTCGGTTTCA 57.515 42.857 0.00 0.00 0.00 2.69
4061 4717 6.017400 TCAAAGCAAGTTGAGGATTTCATC 57.983 37.500 7.16 0.00 35.27 2.92
4062 4718 5.771666 TCAAAGCAAGTTGAGGATTTCATCT 59.228 36.000 7.16 0.00 37.43 2.90
4091 4747 7.914871 TGTTGACATTTCTGACAGTTGTATTTG 59.085 33.333 1.59 0.00 0.00 2.32
4111 4767 8.954350 GTATTTGACACTAGTCTAGAAGGTACA 58.046 37.037 14.02 6.54 45.20 2.90
4112 4768 8.596781 ATTTGACACTAGTCTAGAAGGTACAT 57.403 34.615 14.02 0.00 45.20 2.29
4113 4769 9.696572 ATTTGACACTAGTCTAGAAGGTACATA 57.303 33.333 14.02 5.54 45.20 2.29
4116 4772 8.985922 TGACACTAGTCTAGAAGGTACATACTA 58.014 37.037 14.02 0.00 45.20 1.82
4117 4773 9.480053 GACACTAGTCTAGAAGGTACATACTAG 57.520 40.741 14.02 11.14 41.64 2.57
4118 4774 9.211410 ACACTAGTCTAGAAGGTACATACTAGA 57.789 37.037 17.07 15.46 37.98 2.43
4119 4775 9.701098 CACTAGTCTAGAAGGTACATACTAGAG 57.299 40.741 17.07 8.65 40.87 2.43
4120 4776 8.370182 ACTAGTCTAGAAGGTACATACTAGAGC 58.630 40.741 17.07 13.09 40.87 4.09
4122 4778 7.751646 AGTCTAGAAGGTACATACTAGAGCAT 58.248 38.462 16.67 8.16 40.87 3.79
4123 4779 8.221944 AGTCTAGAAGGTACATACTAGAGCATT 58.778 37.037 16.67 6.33 40.87 3.56
4124 4780 8.293867 GTCTAGAAGGTACATACTAGAGCATTG 58.706 40.741 16.67 0.00 40.87 2.82
4125 4781 7.999545 TCTAGAAGGTACATACTAGAGCATTGT 59.000 37.037 13.99 0.00 37.16 2.71
4126 4782 7.425224 AGAAGGTACATACTAGAGCATTGTT 57.575 36.000 0.00 0.00 0.00 2.83
4127 4783 7.268586 AGAAGGTACATACTAGAGCATTGTTG 58.731 38.462 0.00 0.00 0.00 3.33
4174 4875 8.439971 TCCATACAGTAAAGATAGCCAAATCAT 58.560 33.333 0.00 0.00 0.00 2.45
4220 5211 5.471556 TGATTGACCAATCTTGTTGCAAT 57.528 34.783 19.67 0.00 45.55 3.56
4240 5231 5.220453 GCAATTATGTGCATACCAACTTTGC 60.220 40.000 0.00 0.00 44.29 3.68
4241 5232 4.448537 TTATGTGCATACCAACTTTGCC 57.551 40.909 0.00 0.00 35.51 4.52
4243 5234 2.246469 TGTGCATACCAACTTTGCCAT 58.754 42.857 0.00 0.00 35.51 4.40
4246 5237 1.202290 GCATACCAACTTTGCCATCGG 60.202 52.381 0.00 0.00 0.00 4.18
4261 5252 2.945008 CCATCGGCAAAGAAGAGCAATA 59.055 45.455 0.00 0.00 0.00 1.90
4273 5264 3.589951 AGAGCAATACATGGCCAGAAT 57.410 42.857 13.05 0.86 0.00 2.40
4274 5265 4.712051 AGAGCAATACATGGCCAGAATA 57.288 40.909 13.05 3.44 0.00 1.75
4288 5279 6.866480 TGGCCAGAATATTTTGAAAGCTTAG 58.134 36.000 0.00 0.00 0.00 2.18
4290 5281 6.975197 GGCCAGAATATTTTGAAAGCTTAGTC 59.025 38.462 7.53 0.00 0.00 2.59
4294 5285 9.994432 CAGAATATTTTGAAAGCTTAGTCGATT 57.006 29.630 0.00 0.00 0.00 3.34
4299 5290 7.956420 TTTTGAAAGCTTAGTCGATTGTAGA 57.044 32.000 0.00 0.00 0.00 2.59
4300 5291 7.582435 TTTGAAAGCTTAGTCGATTGTAGAG 57.418 36.000 0.00 0.00 0.00 2.43
4301 5292 5.103000 TGAAAGCTTAGTCGATTGTAGAGC 58.897 41.667 0.00 0.00 0.00 4.09
4302 5293 4.993029 AAGCTTAGTCGATTGTAGAGCT 57.007 40.909 0.00 0.00 40.41 4.09
4303 5294 6.095021 TGAAAGCTTAGTCGATTGTAGAGCTA 59.905 38.462 0.00 0.00 37.97 3.32
4304 5295 6.642707 AAGCTTAGTCGATTGTAGAGCTAT 57.357 37.500 0.00 0.00 37.97 2.97
4305 5296 6.249035 AGCTTAGTCGATTGTAGAGCTATC 57.751 41.667 7.71 0.00 37.24 2.08
4306 5297 5.765677 AGCTTAGTCGATTGTAGAGCTATCA 59.234 40.000 7.71 0.00 37.24 2.15
4307 5298 6.072728 AGCTTAGTCGATTGTAGAGCTATCAG 60.073 42.308 7.71 0.00 37.24 2.90
4308 5299 6.293735 GCTTAGTCGATTGTAGAGCTATCAGT 60.294 42.308 0.00 0.00 31.21 3.41
4309 5300 5.682943 AGTCGATTGTAGAGCTATCAGTC 57.317 43.478 0.00 0.00 31.21 3.51
4310 5301 4.517453 AGTCGATTGTAGAGCTATCAGTCC 59.483 45.833 0.00 0.00 31.21 3.85
4311 5302 4.517453 GTCGATTGTAGAGCTATCAGTCCT 59.483 45.833 0.00 0.00 31.21 3.85
4312 5303 5.701750 GTCGATTGTAGAGCTATCAGTCCTA 59.298 44.000 0.00 0.00 31.21 2.94
4313 5304 5.935206 TCGATTGTAGAGCTATCAGTCCTAG 59.065 44.000 0.00 0.00 31.21 3.02
4314 5305 5.935206 CGATTGTAGAGCTATCAGTCCTAGA 59.065 44.000 0.00 0.00 31.21 2.43
4315 5306 6.428465 CGATTGTAGAGCTATCAGTCCTAGAA 59.572 42.308 0.00 0.00 31.21 2.10
4316 5307 7.120579 CGATTGTAGAGCTATCAGTCCTAGAAT 59.879 40.741 0.00 0.00 31.21 2.40
4317 5308 7.517614 TTGTAGAGCTATCAGTCCTAGAATG 57.482 40.000 0.00 0.00 0.00 2.67
4318 5309 6.842676 TGTAGAGCTATCAGTCCTAGAATGA 58.157 40.000 0.00 0.00 40.82 2.57
4319 5310 7.465960 TGTAGAGCTATCAGTCCTAGAATGAT 58.534 38.462 11.70 11.70 46.63 2.45
4320 5311 8.606830 TGTAGAGCTATCAGTCCTAGAATGATA 58.393 37.037 12.57 12.57 43.92 2.15
4321 5312 7.938140 AGAGCTATCAGTCCTAGAATGATAC 57.062 40.000 9.91 7.98 43.92 2.24
4322 5313 6.597672 AGAGCTATCAGTCCTAGAATGATACG 59.402 42.308 9.91 8.18 43.92 3.06
4323 5314 6.477253 AGCTATCAGTCCTAGAATGATACGA 58.523 40.000 9.91 0.00 43.92 3.43
4324 5315 6.597672 AGCTATCAGTCCTAGAATGATACGAG 59.402 42.308 9.91 5.21 43.92 4.18
4325 5316 5.637006 ATCAGTCCTAGAATGATACGAGC 57.363 43.478 5.79 0.00 43.92 5.03
4382 5374 5.291128 ACAAAGTGTCGATTTTATAGCGAGG 59.709 40.000 0.00 0.00 34.41 4.63
4389 5381 8.002665 GTGTCGATTTTATAGCGAGGTAATTTC 58.997 37.037 0.00 0.00 34.41 2.17
4482 5650 2.031163 GCCGGTGCTGTGAGAAGT 59.969 61.111 1.90 0.00 33.53 3.01
4544 5712 1.073199 CTGGCCGAGGTCTGGTTTT 59.927 57.895 0.00 0.00 0.00 2.43
4600 5768 3.058016 CACCAGATCAACAATGACACCAC 60.058 47.826 0.00 0.00 38.69 4.16
4754 6112 5.363868 AGGACATTGCTTGCTCATACTAGTA 59.636 40.000 4.77 4.77 0.00 1.82
4755 6113 5.694006 GGACATTGCTTGCTCATACTAGTAG 59.306 44.000 8.85 0.00 0.00 2.57
4756 6114 6.227298 ACATTGCTTGCTCATACTAGTAGT 57.773 37.500 8.85 8.14 0.00 2.73
4757 6115 6.276847 ACATTGCTTGCTCATACTAGTAGTC 58.723 40.000 5.96 0.00 0.00 2.59
4819 6177 7.122948 TCTCTTCTCTTAAGCCCTAAGTAACAG 59.877 40.741 0.00 0.00 38.57 3.16
4844 6202 0.466922 CATGCATGGGTCCTCCTTCC 60.467 60.000 19.40 0.00 36.20 3.46
4906 6264 2.939103 GCATTGCTTACCGATCTGAACT 59.061 45.455 0.16 0.00 0.00 3.01
4924 6282 1.340248 ACTGAACCGAATGACTGACGT 59.660 47.619 0.00 0.00 0.00 4.34
4951 6309 5.979517 CACCAACTCTTCCAATTCAAGAAAC 59.020 40.000 0.00 0.00 29.36 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.489771 GGATGTGGACCTGGCCGG 62.490 72.222 3.88 3.88 39.35 6.13
4 5 2.762969 TTTGGATGTGGACCTGGCCG 62.763 60.000 0.00 0.00 0.00 6.13
5 6 1.076549 TTTGGATGTGGACCTGGCC 59.923 57.895 0.00 0.00 0.00 5.36
6 7 0.539438 TGTTTGGATGTGGACCTGGC 60.539 55.000 0.00 0.00 0.00 4.85
7 8 1.247567 GTGTTTGGATGTGGACCTGG 58.752 55.000 0.00 0.00 0.00 4.45
8 9 1.247567 GGTGTTTGGATGTGGACCTG 58.752 55.000 0.00 0.00 0.00 4.00
9 10 0.112412 GGGTGTTTGGATGTGGACCT 59.888 55.000 0.00 0.00 0.00 3.85
10 11 1.241315 CGGGTGTTTGGATGTGGACC 61.241 60.000 0.00 0.00 0.00 4.46
11 12 1.241315 CCGGGTGTTTGGATGTGGAC 61.241 60.000 0.00 0.00 0.00 4.02
12 13 1.074072 CCGGGTGTTTGGATGTGGA 59.926 57.895 0.00 0.00 0.00 4.02
13 14 1.228429 ACCGGGTGTTTGGATGTGG 60.228 57.895 6.32 0.00 0.00 4.17
14 15 1.956043 CACCGGGTGTTTGGATGTG 59.044 57.895 19.15 0.00 0.00 3.21
15 16 1.901464 GCACCGGGTGTTTGGATGT 60.901 57.895 26.86 0.00 35.75 3.06
16 17 1.900981 TGCACCGGGTGTTTGGATG 60.901 57.895 26.86 0.73 35.75 3.51
17 18 1.901464 GTGCACCGGGTGTTTGGAT 60.901 57.895 26.86 0.00 35.75 3.41
18 19 2.517402 GTGCACCGGGTGTTTGGA 60.517 61.111 26.86 0.36 35.75 3.53
19 20 2.830827 TGTGCACCGGGTGTTTGG 60.831 61.111 26.86 2.95 35.75 3.28
20 21 2.410687 TGTGTGCACCGGGTGTTTG 61.411 57.895 26.86 3.43 35.75 2.93
21 22 2.044848 TGTGTGCACCGGGTGTTT 60.045 55.556 26.86 0.00 35.75 2.83
22 23 2.826738 GTGTGTGCACCGGGTGTT 60.827 61.111 26.86 0.00 39.61 3.32
30 31 3.289834 CCAGGCAGGTGTGTGCAC 61.290 66.667 10.75 10.75 45.93 4.57
33 34 4.584518 TGGCCAGGCAGGTGTGTG 62.585 66.667 15.19 0.00 40.61 3.82
34 35 4.275508 CTGGCCAGGCAGGTGTGT 62.276 66.667 26.14 0.00 40.61 3.72
44 45 1.897802 AGAAGAATTTTGCCTGGCCAG 59.102 47.619 26.87 26.87 0.00 4.85
45 46 2.014010 AGAAGAATTTTGCCTGGCCA 57.986 45.000 17.53 4.71 0.00 5.36
46 47 4.743057 ATAAGAAGAATTTTGCCTGGCC 57.257 40.909 17.53 0.00 0.00 5.36
47 48 5.970592 AGAATAAGAAGAATTTTGCCTGGC 58.029 37.500 12.87 12.87 0.00 4.85
48 49 7.161773 TGAGAATAAGAAGAATTTTGCCTGG 57.838 36.000 0.00 0.00 0.00 4.45
49 50 7.275123 GCTTGAGAATAAGAAGAATTTTGCCTG 59.725 37.037 0.00 0.00 0.00 4.85
50 51 7.318893 GCTTGAGAATAAGAAGAATTTTGCCT 58.681 34.615 0.00 0.00 0.00 4.75
51 52 6.533012 GGCTTGAGAATAAGAAGAATTTTGCC 59.467 38.462 0.00 0.00 0.00 4.52
52 53 7.092716 TGGCTTGAGAATAAGAAGAATTTTGC 58.907 34.615 0.00 0.00 0.00 3.68
53 54 8.919661 GTTGGCTTGAGAATAAGAAGAATTTTG 58.080 33.333 0.00 0.00 0.00 2.44
54 55 8.641541 TGTTGGCTTGAGAATAAGAAGAATTTT 58.358 29.630 0.00 0.00 0.00 1.82
55 56 8.084684 GTGTTGGCTTGAGAATAAGAAGAATTT 58.915 33.333 0.00 0.00 0.00 1.82
56 57 7.309438 GGTGTTGGCTTGAGAATAAGAAGAATT 60.309 37.037 0.00 0.00 0.00 2.17
57 58 6.151817 GGTGTTGGCTTGAGAATAAGAAGAAT 59.848 38.462 0.00 0.00 0.00 2.40
58 59 5.473504 GGTGTTGGCTTGAGAATAAGAAGAA 59.526 40.000 0.00 0.00 0.00 2.52
59 60 5.003804 GGTGTTGGCTTGAGAATAAGAAGA 58.996 41.667 0.00 0.00 0.00 2.87
60 61 4.761739 TGGTGTTGGCTTGAGAATAAGAAG 59.238 41.667 0.00 0.00 0.00 2.85
61 62 4.724399 TGGTGTTGGCTTGAGAATAAGAA 58.276 39.130 0.00 0.00 0.00 2.52
62 63 4.326826 CTGGTGTTGGCTTGAGAATAAGA 58.673 43.478 0.00 0.00 0.00 2.10
63 64 3.441572 CCTGGTGTTGGCTTGAGAATAAG 59.558 47.826 0.00 0.00 0.00 1.73
64 65 3.420893 CCTGGTGTTGGCTTGAGAATAA 58.579 45.455 0.00 0.00 0.00 1.40
65 66 2.879756 GCCTGGTGTTGGCTTGAGAATA 60.880 50.000 0.00 0.00 46.38 1.75
66 67 1.915141 CCTGGTGTTGGCTTGAGAAT 58.085 50.000 0.00 0.00 0.00 2.40
67 68 0.823356 GCCTGGTGTTGGCTTGAGAA 60.823 55.000 0.00 0.00 46.38 2.87
68 69 1.228245 GCCTGGTGTTGGCTTGAGA 60.228 57.895 0.00 0.00 46.38 3.27
69 70 3.359002 GCCTGGTGTTGGCTTGAG 58.641 61.111 0.00 0.00 46.38 3.02
75 76 3.405823 AATTTTCATGCCTGGTGTTGG 57.594 42.857 0.00 0.00 0.00 3.77
76 77 5.179182 GGTAAAATTTTCATGCCTGGTGTTG 59.821 40.000 6.72 0.00 0.00 3.33
77 78 5.163258 TGGTAAAATTTTCATGCCTGGTGTT 60.163 36.000 6.72 0.00 0.00 3.32
78 79 4.346418 TGGTAAAATTTTCATGCCTGGTGT 59.654 37.500 6.72 0.00 0.00 4.16
79 80 4.892433 TGGTAAAATTTTCATGCCTGGTG 58.108 39.130 6.72 0.00 0.00 4.17
80 81 4.020307 CCTGGTAAAATTTTCATGCCTGGT 60.020 41.667 6.72 0.00 0.00 4.00
81 82 4.506758 CCTGGTAAAATTTTCATGCCTGG 58.493 43.478 6.72 13.74 0.00 4.45
82 83 3.934579 GCCTGGTAAAATTTTCATGCCTG 59.065 43.478 6.72 9.39 0.00 4.85
83 84 3.582208 TGCCTGGTAAAATTTTCATGCCT 59.418 39.130 6.72 0.00 0.00 4.75
84 85 3.936564 TGCCTGGTAAAATTTTCATGCC 58.063 40.909 6.72 6.73 0.00 4.40
85 86 5.177326 TCATGCCTGGTAAAATTTTCATGC 58.823 37.500 17.08 14.04 32.50 4.06
86 87 6.400568 ACTCATGCCTGGTAAAATTTTCATG 58.599 36.000 6.72 12.95 33.41 3.07
87 88 6.351286 GGACTCATGCCTGGTAAAATTTTCAT 60.351 38.462 6.72 0.82 0.00 2.57
88 89 5.047377 GGACTCATGCCTGGTAAAATTTTCA 60.047 40.000 6.72 0.00 0.00 2.69
89 90 5.047377 TGGACTCATGCCTGGTAAAATTTTC 60.047 40.000 6.72 0.00 0.00 2.29
90 91 4.837860 TGGACTCATGCCTGGTAAAATTTT 59.162 37.500 8.75 8.75 0.00 1.82
91 92 4.415596 TGGACTCATGCCTGGTAAAATTT 58.584 39.130 0.00 0.00 0.00 1.82
92 93 4.019174 CTGGACTCATGCCTGGTAAAATT 58.981 43.478 0.00 0.00 0.00 1.82
93 94 3.624777 CTGGACTCATGCCTGGTAAAAT 58.375 45.455 0.00 0.00 0.00 1.82
94 95 2.290896 CCTGGACTCATGCCTGGTAAAA 60.291 50.000 0.00 0.00 39.08 1.52
95 96 1.281867 CCTGGACTCATGCCTGGTAAA 59.718 52.381 0.00 0.00 39.08 2.01
96 97 0.911769 CCTGGACTCATGCCTGGTAA 59.088 55.000 0.00 0.00 39.08 2.85
97 98 0.042581 TCCTGGACTCATGCCTGGTA 59.957 55.000 11.72 0.00 43.03 3.25
98 99 1.229625 TCCTGGACTCATGCCTGGT 60.230 57.895 11.72 0.00 43.03 4.00
99 100 1.222936 GTCCTGGACTCATGCCTGG 59.777 63.158 19.53 7.26 43.65 4.45
100 101 0.325933 TTGTCCTGGACTCATGCCTG 59.674 55.000 26.03 0.00 33.15 4.85
101 102 0.617413 CTTGTCCTGGACTCATGCCT 59.383 55.000 26.03 0.00 33.15 4.75
102 103 0.615331 TCTTGTCCTGGACTCATGCC 59.385 55.000 26.03 0.00 33.15 4.40
103 104 2.079925 GTTCTTGTCCTGGACTCATGC 58.920 52.381 26.03 11.04 33.15 4.06
104 105 2.038952 TGGTTCTTGTCCTGGACTCATG 59.961 50.000 26.03 13.67 33.15 3.07
105 106 2.338809 TGGTTCTTGTCCTGGACTCAT 58.661 47.619 26.03 0.00 33.15 2.90
106 107 1.801242 TGGTTCTTGTCCTGGACTCA 58.199 50.000 26.03 12.81 33.15 3.41
107 108 2.879026 GTTTGGTTCTTGTCCTGGACTC 59.121 50.000 26.03 11.73 33.15 3.36
108 109 2.509964 AGTTTGGTTCTTGTCCTGGACT 59.490 45.455 26.03 0.00 33.15 3.85
109 110 2.932261 AGTTTGGTTCTTGTCCTGGAC 58.068 47.619 19.96 19.96 0.00 4.02
110 111 3.496160 GCTAGTTTGGTTCTTGTCCTGGA 60.496 47.826 0.00 0.00 0.00 3.86
111 112 2.814336 GCTAGTTTGGTTCTTGTCCTGG 59.186 50.000 0.00 0.00 0.00 4.45
112 113 2.814336 GGCTAGTTTGGTTCTTGTCCTG 59.186 50.000 0.00 0.00 0.00 3.86
113 114 2.224793 GGGCTAGTTTGGTTCTTGTCCT 60.225 50.000 0.00 0.00 31.73 3.85
114 115 2.160205 GGGCTAGTTTGGTTCTTGTCC 58.840 52.381 0.00 0.00 0.00 4.02
115 116 1.804748 CGGGCTAGTTTGGTTCTTGTC 59.195 52.381 0.00 0.00 0.00 3.18
116 117 1.892209 CGGGCTAGTTTGGTTCTTGT 58.108 50.000 0.00 0.00 0.00 3.16
117 118 0.521735 GCGGGCTAGTTTGGTTCTTG 59.478 55.000 0.00 0.00 0.00 3.02
118 119 0.109723 TGCGGGCTAGTTTGGTTCTT 59.890 50.000 0.00 0.00 0.00 2.52
119 120 0.321653 CTGCGGGCTAGTTTGGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
120 121 0.605589 ACTGCGGGCTAGTTTGGTTC 60.606 55.000 0.00 0.00 0.00 3.62
121 122 0.889186 CACTGCGGGCTAGTTTGGTT 60.889 55.000 0.00 0.00 0.00 3.67
122 123 1.302511 CACTGCGGGCTAGTTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
123 124 2.690778 GCACTGCGGGCTAGTTTGG 61.691 63.158 0.00 0.00 0.00 3.28
124 125 1.514678 TTGCACTGCGGGCTAGTTTG 61.515 55.000 0.00 0.00 0.00 2.93
125 126 1.228124 TTGCACTGCGGGCTAGTTT 60.228 52.632 0.00 0.00 0.00 2.66
126 127 1.672356 CTTGCACTGCGGGCTAGTT 60.672 57.895 0.00 0.00 31.00 2.24
127 128 2.046892 CTTGCACTGCGGGCTAGT 60.047 61.111 0.00 0.00 31.00 2.57
128 129 1.812922 CTCTTGCACTGCGGGCTAG 60.813 63.158 7.63 7.63 35.81 3.42
129 130 2.265739 CTCTTGCACTGCGGGCTA 59.734 61.111 0.00 0.00 0.00 3.93
130 131 3.630013 TCTCTTGCACTGCGGGCT 61.630 61.111 0.00 0.00 0.00 5.19
131 132 3.426568 GTCTCTTGCACTGCGGGC 61.427 66.667 0.00 0.00 0.00 6.13
132 133 3.114616 CGTCTCTTGCACTGCGGG 61.115 66.667 0.00 0.00 0.00 6.13
133 134 2.049156 TCGTCTCTTGCACTGCGG 60.049 61.111 0.00 0.00 0.00 5.69
134 135 2.091112 CCTCGTCTCTTGCACTGCG 61.091 63.158 0.00 0.00 0.00 5.18
148 149 1.764054 AAGCCCCTCTCCATCCTCG 60.764 63.158 0.00 0.00 0.00 4.63
186 188 0.034896 AAAAGCGATCACACCCGACT 59.965 50.000 0.00 0.00 0.00 4.18
202 204 4.515361 TCACCGGAATCCGCTATTTAAAA 58.485 39.130 17.50 0.00 46.86 1.52
381 401 4.357947 GCGTCTCCGGTGTCTGCA 62.358 66.667 0.00 0.00 33.68 4.41
426 446 3.509388 CTTCCGTAACTGAAGCGGT 57.491 52.632 0.00 0.00 45.11 5.68
459 479 4.779733 AGACGGGTCAGGGCGGAT 62.780 66.667 1.17 0.00 0.00 4.18
470 490 0.110238 CGCACAACATTGAAGACGGG 60.110 55.000 0.00 0.00 0.00 5.28
486 506 1.368850 CGATGTAGATCGCGTCGCA 60.369 57.895 18.75 4.89 44.75 5.10
495 515 4.245660 CCCGCATTAATGACGATGTAGAT 58.754 43.478 24.32 0.00 32.02 1.98
502 522 1.436195 GCTGCCCGCATTAATGACGA 61.436 55.000 24.32 10.78 38.92 4.20
505 525 1.102809 CCAGCTGCCCGCATTAATGA 61.103 55.000 19.73 0.00 42.61 2.57
532 552 4.077188 GCTCGCACGTGTTCCTGC 62.077 66.667 18.38 10.87 0.00 4.85
630 654 7.168135 GTGATTTTCCTGCAAACTAAAGACAAG 59.832 37.037 0.00 0.00 0.00 3.16
666 691 4.323485 CGGGCCTATATTGGTATGTGATGT 60.323 45.833 0.84 0.00 0.00 3.06
674 699 2.105134 CCAACACGGGCCTATATTGGTA 59.895 50.000 16.60 0.00 33.41 3.25
678 703 2.708861 TCATCCAACACGGGCCTATATT 59.291 45.455 0.84 0.00 34.36 1.28
710 735 2.654877 CGGACCTAGTTGTGCGGT 59.345 61.111 5.36 0.00 44.93 5.68
714 739 2.007049 GCATGGTCGGACCTAGTTGTG 61.007 57.143 26.41 15.64 39.58 3.33
729 754 1.439353 CGATGAAACCTCCCGCATGG 61.439 60.000 0.00 0.00 0.00 3.66
744 771 2.537560 GGCATCTCCAACGCCGATG 61.538 63.158 0.00 0.00 35.79 3.84
779 811 3.054434 TGGATATTCTGGGCATATTCCGG 60.054 47.826 0.00 0.00 0.00 5.14
802 834 2.898612 TGCGGGTATTATTCGGTGGATA 59.101 45.455 0.00 0.00 0.00 2.59
917 949 0.037975 CTTGCAGGTTGATTGGTGCC 60.038 55.000 0.00 0.00 34.91 5.01
948 980 5.476091 TCTTTCTCCTCTGTTCTTTCTCC 57.524 43.478 0.00 0.00 0.00 3.71
950 982 5.151454 TCCTCTTTCTCCTCTGTTCTTTCT 58.849 41.667 0.00 0.00 0.00 2.52
1296 1329 1.536922 CGGAGGCTAGCTACATGTGTG 60.537 57.143 15.72 2.27 0.00 3.82
1356 1393 6.813152 CGATTCCAAATCCAAGCTTAAACAAT 59.187 34.615 0.00 0.00 0.00 2.71
1437 1474 1.825474 TGTACCAACTAGAGCAGAGCC 59.175 52.381 0.00 0.00 0.00 4.70
1509 1546 3.709653 ACCATACGATTACCACATCCAGT 59.290 43.478 0.00 0.00 0.00 4.00
1510 1547 4.336889 ACCATACGATTACCACATCCAG 57.663 45.455 0.00 0.00 0.00 3.86
1531 1568 6.891361 ACATTACAATTCATGTCCTGATCCAA 59.109 34.615 0.00 0.00 42.70 3.53
1532 1569 6.319405 CACATTACAATTCATGTCCTGATCCA 59.681 38.462 0.00 0.00 42.70 3.41
1533 1570 6.732154 CACATTACAATTCATGTCCTGATCC 58.268 40.000 0.00 0.00 42.70 3.36
1534 1571 6.204359 GCACATTACAATTCATGTCCTGATC 58.796 40.000 0.00 0.00 42.70 2.92
1535 1572 5.068198 GGCACATTACAATTCATGTCCTGAT 59.932 40.000 0.00 0.00 42.70 2.90
1536 1573 4.398988 GGCACATTACAATTCATGTCCTGA 59.601 41.667 0.00 0.00 42.70 3.86
1537 1574 4.158209 TGGCACATTACAATTCATGTCCTG 59.842 41.667 0.00 0.00 42.70 3.86
1538 1575 4.343231 TGGCACATTACAATTCATGTCCT 58.657 39.130 0.00 0.00 42.70 3.85
1539 1576 4.717233 TGGCACATTACAATTCATGTCC 57.283 40.909 0.00 0.00 42.70 4.02
1562 1599 1.857837 GAGAGAGAAACTAGCATGCGC 59.142 52.381 13.01 0.00 38.99 6.09
1598 1635 3.041351 CCACGCGTGTGCTGCTAA 61.041 61.111 34.81 0.00 45.04 3.09
1675 1712 9.231297 AGCTTCTTGTTTCATGTAATTAGCTTA 57.769 29.630 0.00 0.00 30.56 3.09
1733 1770 0.673333 CCATCACAACGTGGCTGCTA 60.673 55.000 0.00 0.00 33.87 3.49
1750 1787 0.263172 AACACCAACCCCAATGACCA 59.737 50.000 0.00 0.00 0.00 4.02
1754 1791 2.292828 AGAGAACACCAACCCCAATG 57.707 50.000 0.00 0.00 0.00 2.82
1765 1802 1.272769 ACCTTGAGCGGTAGAGAACAC 59.727 52.381 0.00 0.00 34.94 3.32
1775 1812 1.210931 CATGCAACACCTTGAGCGG 59.789 57.895 0.00 0.00 0.00 5.52
1776 1813 1.210931 CCATGCAACACCTTGAGCG 59.789 57.895 0.00 0.00 0.00 5.03
1783 1820 1.080298 GAGCTTGCCATGCAACACC 60.080 57.895 5.30 0.00 43.99 4.16
1868 1905 1.146041 ACTGACGCTTTGGTCTGCA 59.854 52.632 0.00 0.00 38.87 4.41
1881 1918 2.285834 CGCTATTGCCGATTTCACTGAC 60.286 50.000 0.00 0.00 35.36 3.51
1886 1923 1.295792 GGTCGCTATTGCCGATTTCA 58.704 50.000 0.00 0.00 35.36 2.69
1888 1925 1.967319 ATGGTCGCTATTGCCGATTT 58.033 45.000 0.00 0.00 35.36 2.17
1899 1936 0.969894 GTATGCTCCCTATGGTCGCT 59.030 55.000 0.00 0.00 32.69 4.93
1902 1939 5.482908 CTTACATGTATGCTCCCTATGGTC 58.517 45.833 6.36 0.00 0.00 4.02
2129 2353 7.500227 TGACAGCTATAAGAATGGATGAAAAGG 59.500 37.037 0.00 0.00 33.99 3.11
2251 2476 0.317160 AAGAAGATCGGTCACACGCA 59.683 50.000 0.00 0.00 0.00 5.24
2456 2681 1.048601 TCTTCTTCGGTGCTCCAAGT 58.951 50.000 5.52 0.00 0.00 3.16
2573 2798 1.140252 AGCACGGTTAAGGTTGACACT 59.860 47.619 0.00 0.00 0.00 3.55
2640 2865 9.976511 CATATTAAATGAACAAGAGCAATCCAT 57.023 29.630 0.00 0.00 0.00 3.41
2641 2866 8.415553 CCATATTAAATGAACAAGAGCAATCCA 58.584 33.333 0.00 0.00 0.00 3.41
2676 2901 6.322201 AGTGACCAAATGATTGTATGGGAATC 59.678 38.462 0.03 0.00 37.26 2.52
2721 2946 5.533528 ACAACCTACCAGACCATTTAACAAC 59.466 40.000 0.00 0.00 0.00 3.32
2761 2986 6.411376 TGTTGAGAAAAAGAGTGGTCTGTTA 58.589 36.000 0.00 0.00 29.19 2.41
2818 3043 3.629142 ACAGGGTATACACTTTGGAGC 57.371 47.619 4.43 0.00 0.00 4.70
3021 3249 0.871722 GTATGCAAGTGAACCACGCA 59.128 50.000 0.00 0.00 39.64 5.24
3059 3287 1.808945 CTTGCTGTAACAAGGGAGCAG 59.191 52.381 0.00 0.00 42.19 4.24
3068 3296 2.289444 GGCACTCCTACTTGCTGTAACA 60.289 50.000 0.00 0.00 38.85 2.41
3085 3313 9.294030 CAAGTAAATGATAAATCTTGAAGGCAC 57.706 33.333 0.00 0.00 35.69 5.01
3124 3352 4.560035 CACAAAACTTCTCAGTTGCACTTG 59.440 41.667 0.00 0.00 42.89 3.16
3197 3845 3.369546 ACTTTTCTTGTTGCGGGAATG 57.630 42.857 0.00 0.00 0.00 2.67
3333 3984 7.308529 CCACATCACAGACAAGTTAAAATAGCA 60.309 37.037 0.00 0.00 0.00 3.49
3376 4027 2.746362 AGGAACTACCGAACTACAGACG 59.254 50.000 0.00 0.00 44.74 4.18
3391 4042 9.489084 GGCAAAACTTTATTCAAATTAGGAACT 57.511 29.630 0.00 0.00 46.37 3.01
3392 4043 8.432359 CGGCAAAACTTTATTCAAATTAGGAAC 58.568 33.333 0.00 0.00 0.00 3.62
3393 4044 8.145122 ACGGCAAAACTTTATTCAAATTAGGAA 58.855 29.630 0.00 0.00 0.00 3.36
3394 4045 7.662897 ACGGCAAAACTTTATTCAAATTAGGA 58.337 30.769 0.00 0.00 0.00 2.94
3395 4046 7.062956 GGACGGCAAAACTTTATTCAAATTAGG 59.937 37.037 0.00 0.00 0.00 2.69
3410 4061 5.110940 TGTACTTAAATGGACGGCAAAAC 57.889 39.130 0.00 0.00 0.00 2.43
3551 4203 3.402110 CAAGTCATACTCTTGGCACACA 58.598 45.455 0.00 0.00 39.29 3.72
3700 4352 0.883833 CACACCCCTGAGAAACATGC 59.116 55.000 0.00 0.00 0.00 4.06
3714 4366 5.989777 AGATTACTTAGAACACACACACACC 59.010 40.000 0.00 0.00 0.00 4.16
3768 4420 1.091771 CCTCCCGCACATTACTGCAG 61.092 60.000 13.48 13.48 36.94 4.41
3852 4506 4.170292 ACTGAAATCTGCAACAGCATTC 57.830 40.909 0.00 0.00 37.69 2.67
3885 4540 1.468506 TACTGAACGTGCTCTGGCCA 61.469 55.000 4.71 4.71 37.74 5.36
4032 4688 2.357637 CCTCAACTTGCTTTGAAACCGA 59.642 45.455 0.00 0.00 35.07 4.69
4061 4717 5.998454 ACTGTCAGAAATGTCAACAGAAG 57.002 39.130 19.79 1.69 40.01 2.85
4062 4718 5.647658 ACAACTGTCAGAAATGTCAACAGAA 59.352 36.000 19.79 0.00 40.01 3.02
4091 4747 9.480053 CTAGTATGTACCTTCTAGACTAGTGTC 57.520 40.741 0.00 0.00 43.22 3.67
4174 4875 9.508642 TCATTACATACATAATAATTTGCCGGA 57.491 29.630 5.05 0.00 0.00 5.14
4220 5211 3.829026 TGGCAAAGTTGGTATGCACATAA 59.171 39.130 0.00 0.00 41.80 1.90
4240 5231 1.167851 TTGCTCTTCTTTGCCGATGG 58.832 50.000 0.00 0.00 0.00 3.51
4241 5232 3.374988 TGTATTGCTCTTCTTTGCCGATG 59.625 43.478 0.00 0.00 0.00 3.84
4243 5234 3.052455 TGTATTGCTCTTCTTTGCCGA 57.948 42.857 0.00 0.00 0.00 5.54
4246 5237 3.442100 GCCATGTATTGCTCTTCTTTGC 58.558 45.455 0.00 0.00 0.00 3.68
4247 5238 3.444742 TGGCCATGTATTGCTCTTCTTTG 59.555 43.478 0.00 0.00 0.00 2.77
4248 5239 3.698040 CTGGCCATGTATTGCTCTTCTTT 59.302 43.478 5.51 0.00 0.00 2.52
4254 5245 5.972107 AATATTCTGGCCATGTATTGCTC 57.028 39.130 5.51 0.00 0.00 4.26
4261 5252 5.188359 AGCTTTCAAAATATTCTGGCCATGT 59.812 36.000 5.51 0.00 0.00 3.21
4273 5264 9.647797 TCTACAATCGACTAAGCTTTCAAAATA 57.352 29.630 3.20 0.00 0.00 1.40
4274 5265 8.547967 TCTACAATCGACTAAGCTTTCAAAAT 57.452 30.769 3.20 0.00 0.00 1.82
4288 5279 4.517453 AGGACTGATAGCTCTACAATCGAC 59.483 45.833 0.00 0.00 0.00 4.20
4290 5281 5.935206 TCTAGGACTGATAGCTCTACAATCG 59.065 44.000 0.00 0.00 0.00 3.34
4294 5285 6.842676 TCATTCTAGGACTGATAGCTCTACA 58.157 40.000 0.00 0.00 0.00 2.74
4298 5289 6.596106 TCGTATCATTCTAGGACTGATAGCTC 59.404 42.308 0.00 0.00 35.77 4.09
4299 5290 6.477253 TCGTATCATTCTAGGACTGATAGCT 58.523 40.000 7.51 0.00 35.77 3.32
4300 5291 6.676943 GCTCGTATCATTCTAGGACTGATAGC 60.677 46.154 7.51 6.61 35.77 2.97
4301 5292 6.372937 TGCTCGTATCATTCTAGGACTGATAG 59.627 42.308 7.51 1.85 35.77 2.08
4302 5293 6.238648 TGCTCGTATCATTCTAGGACTGATA 58.761 40.000 4.30 4.30 34.58 2.15
4303 5294 5.073428 TGCTCGTATCATTCTAGGACTGAT 58.927 41.667 5.86 5.86 36.28 2.90
4304 5295 4.461198 TGCTCGTATCATTCTAGGACTGA 58.539 43.478 0.00 0.00 0.00 3.41
4305 5296 4.837896 TGCTCGTATCATTCTAGGACTG 57.162 45.455 0.00 0.00 0.00 3.51
4306 5297 5.182950 CAGATGCTCGTATCATTCTAGGACT 59.817 44.000 0.00 0.00 0.00 3.85
4307 5298 5.398169 CAGATGCTCGTATCATTCTAGGAC 58.602 45.833 0.00 0.00 0.00 3.85
4308 5299 4.082517 GCAGATGCTCGTATCATTCTAGGA 60.083 45.833 0.00 0.00 38.21 2.94
4309 5300 4.172505 GCAGATGCTCGTATCATTCTAGG 58.827 47.826 0.00 0.00 38.21 3.02
4324 5315 1.575244 TGCTGTATTCGAGCAGATGC 58.425 50.000 14.96 0.00 41.56 3.91
4325 5316 3.193263 ACTTGCTGTATTCGAGCAGATG 58.807 45.455 14.96 5.33 46.81 2.90
4364 5356 7.707464 TGAAATTACCTCGCTATAAAATCGACA 59.293 33.333 0.00 0.00 0.00 4.35
4367 5359 9.318041 CAATGAAATTACCTCGCTATAAAATCG 57.682 33.333 0.00 0.00 32.46 3.34
4467 5635 1.269723 TGAGTACTTCTCACAGCACCG 59.730 52.381 0.00 0.00 46.77 4.94
4482 5650 6.048732 TGACATAGGCAGAAAACATGAGTA 57.951 37.500 0.00 0.00 0.00 2.59
4581 5749 4.067192 TGAGTGGTGTCATTGTTGATCTG 58.933 43.478 0.00 0.00 33.56 2.90
4600 5768 4.499865 CGTCCAGTATCTAATGGGTGTGAG 60.500 50.000 4.04 0.00 41.50 3.51
4754 6112 2.636830 GATGCCATGCAACTACTGACT 58.363 47.619 0.00 0.00 43.62 3.41
4755 6113 1.672881 GGATGCCATGCAACTACTGAC 59.327 52.381 0.00 0.00 43.62 3.51
4756 6114 1.561076 AGGATGCCATGCAACTACTGA 59.439 47.619 0.00 0.00 43.62 3.41
4757 6115 2.048444 AGGATGCCATGCAACTACTG 57.952 50.000 0.00 0.00 43.62 2.74
4819 6177 0.471617 AGGACCCATGCATGTCTAGC 59.528 55.000 24.58 9.36 0.00 3.42
4844 6202 8.515473 CAAATAATTCTCGTTATTTTGCAGACG 58.485 33.333 2.76 0.00 40.47 4.18
4906 6264 1.778334 CACGTCAGTCATTCGGTTCA 58.222 50.000 0.00 0.00 0.00 3.18
4924 6282 2.238521 GAATTGGAAGAGTTGGTGGCA 58.761 47.619 0.00 0.00 0.00 4.92
4951 6309 0.680921 ATGGCCACATGAAAGACGGG 60.681 55.000 8.16 0.00 35.57 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.