Multiple sequence alignment - TraesCS7D01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263600 chr7D 100.000 3573 0 0 1 3573 244155715 244152143 0.000000e+00 6599.0
1 TraesCS7D01G263600 chr7A 96.770 867 22 4 1971 2833 259573713 259572849 0.000000e+00 1441.0
2 TraesCS7D01G263600 chr7A 94.545 880 34 6 754 1630 259574747 259573879 0.000000e+00 1347.0
3 TraesCS7D01G263600 chr7A 88.179 313 36 1 36 348 259589089 259588778 4.360000e-99 372.0
4 TraesCS7D01G263600 chr7A 95.082 122 5 1 2831 2952 259572573 259572453 1.310000e-44 191.0
5 TraesCS7D01G263600 chr7A 96.429 112 4 0 1631 1742 259573821 259573710 6.090000e-43 185.0
6 TraesCS7D01G263600 chr7A 75.668 374 30 20 2953 3278 259572519 259572159 2.890000e-26 130.0
7 TraesCS7D01G263600 chr7A 85.156 128 4 2 3315 3442 259572158 259572046 2.250000e-22 117.0
8 TraesCS7D01G263600 chr7B 88.880 1223 63 25 1631 2817 219495811 219494626 0.000000e+00 1437.0
9 TraesCS7D01G263600 chr7B 91.300 977 46 24 663 1630 219496813 219495867 0.000000e+00 1297.0
10 TraesCS7D01G263600 chr7B 92.713 247 16 2 102 348 219499393 219499149 4.390000e-94 355.0
11 TraesCS7D01G263600 chr7B 83.469 369 28 20 3217 3571 219494336 219493987 2.680000e-81 313.0
12 TraesCS7D01G263600 chr7B 87.500 184 19 4 465 647 436836898 436836718 3.610000e-50 209.0
13 TraesCS7D01G263600 chr7B 81.675 191 29 6 469 657 462919284 462919470 1.720000e-33 154.0
14 TraesCS7D01G263600 chr7B 81.675 191 29 6 469 657 462954245 462954431 1.720000e-33 154.0
15 TraesCS7D01G263600 chr3A 97.423 194 5 0 470 663 706754578 706754771 7.390000e-87 331.0
16 TraesCS7D01G263600 chr3A 100.000 45 0 0 620 664 697874357 697874313 2.290000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263600 chr7D 244152143 244155715 3572 True 6599.0 6599 100.000000 1 3573 1 chr7D.!!$R1 3572
1 TraesCS7D01G263600 chr7A 259572046 259574747 2701 True 568.5 1441 90.608333 754 3442 6 chr7A.!!$R2 2688
2 TraesCS7D01G263600 chr7B 219493987 219499393 5406 True 850.5 1437 89.090500 102 3571 4 chr7B.!!$R2 3469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.036858 GTGAGAGGAGGAGGCACAAC 60.037 60.0 0.00 0.00 0.00 3.32 F
574 1728 0.036952 ACATGGCGTCCAACAGAGAG 60.037 55.0 0.00 0.00 36.95 3.20 F
745 2767 0.178767 GGCCCATTTTGATGGAAGGC 59.821 55.0 6.99 2.42 44.39 4.35 F
746 2768 0.178767 GCCCATTTTGATGGAAGGCC 59.821 55.0 6.99 0.00 44.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 3305 0.251354 CAGATCCACTCCACCACCAG 59.749 60.000 0.00 0.0 0.00 4.00 R
1864 3953 0.721718 GCTGTGGAACGAGTACATGC 59.278 55.000 0.00 0.0 42.39 4.06 R
1914 4003 0.881796 GTAACCAAGGGTGCAGCTTC 59.118 55.000 16.65 0.0 35.34 3.86 R
2622 4742 1.888512 TGGCATGTTCAAAGGAAGCTC 59.111 47.619 0.00 0.0 32.62 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.188965 GGACGACGTGAGAGGAGG 58.811 66.667 4.58 0.00 0.00 4.30
18 19 1.376942 GGACGACGTGAGAGGAGGA 60.377 63.158 4.58 0.00 0.00 3.71
19 20 1.370587 GGACGACGTGAGAGGAGGAG 61.371 65.000 4.58 0.00 0.00 3.69
20 21 1.370587 GACGACGTGAGAGGAGGAGG 61.371 65.000 4.58 0.00 0.00 4.30
21 22 2.766400 CGACGTGAGAGGAGGAGGC 61.766 68.421 0.00 0.00 0.00 4.70
22 23 1.679305 GACGTGAGAGGAGGAGGCA 60.679 63.158 0.00 0.00 0.00 4.75
23 24 1.939769 GACGTGAGAGGAGGAGGCAC 61.940 65.000 0.00 0.00 0.00 5.01
24 25 1.979155 CGTGAGAGGAGGAGGCACA 60.979 63.158 0.00 0.00 0.00 4.57
25 26 1.536073 CGTGAGAGGAGGAGGCACAA 61.536 60.000 0.00 0.00 0.00 3.33
26 27 0.036858 GTGAGAGGAGGAGGCACAAC 60.037 60.000 0.00 0.00 0.00 3.32
27 28 1.216710 GAGAGGAGGAGGCACAACG 59.783 63.158 0.00 0.00 0.00 4.10
28 29 1.534235 AGAGGAGGAGGCACAACGT 60.534 57.895 0.00 0.00 0.00 3.99
29 30 1.079750 GAGGAGGAGGCACAACGTC 60.080 63.158 0.00 0.00 0.00 4.34
30 31 2.432628 GGAGGAGGCACAACGTCG 60.433 66.667 0.00 0.00 33.84 5.12
31 32 3.112709 GAGGAGGCACAACGTCGC 61.113 66.667 0.00 0.00 33.84 5.19
36 37 3.712881 GGCACAACGTCGCCTGTC 61.713 66.667 14.50 0.00 45.29 3.51
37 38 4.059459 GCACAACGTCGCCTGTCG 62.059 66.667 0.00 0.00 40.15 4.35
38 39 4.059459 CACAACGTCGCCTGTCGC 62.059 66.667 0.00 0.00 38.27 5.19
39 40 4.578898 ACAACGTCGCCTGTCGCA 62.579 61.111 0.00 0.00 37.30 5.10
40 41 3.767230 CAACGTCGCCTGTCGCAG 61.767 66.667 0.00 0.52 37.30 5.18
41 42 3.973516 AACGTCGCCTGTCGCAGA 61.974 61.111 8.20 0.00 37.30 4.26
42 43 3.898627 AACGTCGCCTGTCGCAGAG 62.899 63.158 8.20 3.18 36.95 3.35
68 69 2.985282 CAACCACGCTGGCACCAT 60.985 61.111 4.23 0.00 42.67 3.55
69 70 1.673993 CAACCACGCTGGCACCATA 60.674 57.895 4.23 0.00 42.67 2.74
70 71 1.377202 AACCACGCTGGCACCATAG 60.377 57.895 4.23 0.00 42.67 2.23
71 72 3.204827 CCACGCTGGCACCATAGC 61.205 66.667 0.00 0.00 36.60 2.97
75 76 4.175337 GCTGGCACCATAGCGGGA 62.175 66.667 0.00 0.00 40.22 5.14
76 77 2.203070 CTGGCACCATAGCGGGAC 60.203 66.667 0.00 0.00 40.22 4.46
77 78 2.687200 TGGCACCATAGCGGGACT 60.687 61.111 0.00 0.00 40.22 3.85
78 79 2.109181 GGCACCATAGCGGGACTC 59.891 66.667 0.00 0.00 40.22 3.36
79 80 2.109181 GCACCATAGCGGGACTCC 59.891 66.667 0.00 0.00 40.22 3.85
80 81 2.822399 CACCATAGCGGGACTCCC 59.178 66.667 3.63 3.63 40.22 4.30
81 82 1.762460 CACCATAGCGGGACTCCCT 60.762 63.158 12.62 0.00 42.67 4.20
82 83 1.457831 ACCATAGCGGGACTCCCTC 60.458 63.158 12.62 4.07 42.67 4.30
83 84 2.565645 CCATAGCGGGACTCCCTCG 61.566 68.421 12.62 1.00 42.67 4.63
84 85 2.203509 ATAGCGGGACTCCCTCGG 60.204 66.667 12.62 0.00 42.67 4.63
85 86 3.070987 ATAGCGGGACTCCCTCGGT 62.071 63.158 12.62 7.96 42.67 4.69
88 89 3.141488 CGGGACTCCCTCGGTGAG 61.141 72.222 12.62 0.00 42.67 3.51
89 90 2.037527 GGGACTCCCTCGGTGAGT 59.962 66.667 6.90 6.75 45.47 3.41
91 92 3.188965 GACTCCCTCGGTGAGTCG 58.811 66.667 14.53 0.00 46.49 4.18
92 93 3.053849 GACTCCCTCGGTGAGTCGC 62.054 68.421 14.53 0.00 46.49 5.19
93 94 3.827898 CTCCCTCGGTGAGTCGCC 61.828 72.222 13.05 13.05 0.00 5.54
117 118 4.789075 GCGCCGCTGTAGACCGAA 62.789 66.667 0.00 0.00 0.00 4.30
143 144 3.441500 AGGAGAAGGATCCCACAAAAC 57.558 47.619 8.55 0.00 40.53 2.43
178 179 6.761030 GACAAGTGTCACACATGTAGTGCAT 61.761 44.000 18.41 0.00 44.47 3.96
193 194 0.320683 TGCATCACTTCTCACCACCG 60.321 55.000 0.00 0.00 0.00 4.94
194 195 1.021390 GCATCACTTCTCACCACCGG 61.021 60.000 0.00 0.00 0.00 5.28
348 349 5.964958 AACAAAGTCATGGGATACAACTG 57.035 39.130 0.00 0.00 39.74 3.16
349 350 5.241403 ACAAAGTCATGGGATACAACTGA 57.759 39.130 0.00 0.00 39.74 3.41
350 351 5.003804 ACAAAGTCATGGGATACAACTGAC 58.996 41.667 0.00 0.00 39.60 3.51
374 1528 1.071699 TGGAGTACCAAAGAGCCACAC 59.928 52.381 0.00 0.00 43.91 3.82
375 1529 1.429463 GAGTACCAAAGAGCCACACG 58.571 55.000 0.00 0.00 0.00 4.49
401 1555 6.127026 TGGAGTCCTAAAGAAAATCCTAGAGC 60.127 42.308 11.33 0.00 0.00 4.09
402 1556 6.099125 GGAGTCCTAAAGAAAATCCTAGAGCT 59.901 42.308 0.41 0.00 0.00 4.09
429 1583 1.064296 AAGACTATGCGCCTCGACG 59.936 57.895 4.18 0.00 0.00 5.12
434 1588 0.237498 CTATGCGCCTCGACGACATA 59.763 55.000 4.18 0.00 33.81 2.29
439 1593 0.643820 CGCCTCGACGACATAAAACC 59.356 55.000 0.00 0.00 34.06 3.27
443 1597 3.126343 GCCTCGACGACATAAAACCATTT 59.874 43.478 0.00 0.00 0.00 2.32
492 1646 8.660295 AATTTCTTTTTAGGGGTAAACTAGGG 57.340 34.615 0.00 0.00 0.00 3.53
493 1647 7.405228 TTTCTTTTTAGGGGTAAACTAGGGA 57.595 36.000 0.00 0.00 0.00 4.20
494 1648 7.593351 TTCTTTTTAGGGGTAAACTAGGGAT 57.407 36.000 0.00 0.00 0.00 3.85
495 1649 7.593351 TCTTTTTAGGGGTAAACTAGGGATT 57.407 36.000 0.00 0.00 0.00 3.01
496 1650 8.003564 TCTTTTTAGGGGTAAACTAGGGATTT 57.996 34.615 0.00 0.00 0.00 2.17
497 1651 8.458575 TCTTTTTAGGGGTAAACTAGGGATTTT 58.541 33.333 0.00 0.00 0.00 1.82
498 1652 9.758021 CTTTTTAGGGGTAAACTAGGGATTTTA 57.242 33.333 0.00 0.00 0.00 1.52
501 1655 9.925545 TTTAGGGGTAAACTAGGGATTTTATTC 57.074 33.333 0.00 0.00 0.00 1.75
502 1656 7.533923 AGGGGTAAACTAGGGATTTTATTCA 57.466 36.000 0.00 0.00 0.00 2.57
503 1657 7.946381 AGGGGTAAACTAGGGATTTTATTCAA 58.054 34.615 0.00 0.00 0.00 2.69
504 1658 8.403474 AGGGGTAAACTAGGGATTTTATTCAAA 58.597 33.333 0.00 0.00 0.00 2.69
505 1659 8.472413 GGGGTAAACTAGGGATTTTATTCAAAC 58.528 37.037 0.00 0.00 0.00 2.93
506 1660 9.027202 GGGTAAACTAGGGATTTTATTCAAACA 57.973 33.333 0.00 0.00 0.00 2.83
515 1669 8.987890 AGGGATTTTATTCAAACATTCAAAACG 58.012 29.630 0.00 0.00 0.00 3.60
516 1670 8.769891 GGGATTTTATTCAAACATTCAAAACGT 58.230 29.630 0.00 0.00 0.00 3.99
517 1671 9.791838 GGATTTTATTCAAACATTCAAAACGTC 57.208 29.630 0.00 0.00 0.00 4.34
520 1674 8.918961 TTTATTCAAACATTCAAAACGTCTGT 57.081 26.923 0.00 0.00 0.00 3.41
521 1675 6.810888 ATTCAAACATTCAAAACGTCTGTG 57.189 33.333 0.00 0.00 0.00 3.66
522 1676 5.553290 TCAAACATTCAAAACGTCTGTGA 57.447 34.783 0.00 0.00 0.00 3.58
523 1677 6.130298 TCAAACATTCAAAACGTCTGTGAT 57.870 33.333 0.00 0.00 0.00 3.06
524 1678 7.252965 TCAAACATTCAAAACGTCTGTGATA 57.747 32.000 0.00 0.00 0.00 2.15
526 1680 6.612247 AACATTCAAAACGTCTGTGATACA 57.388 33.333 0.00 0.00 0.00 2.29
528 1682 5.179368 ACATTCAAAACGTCTGTGATACAGG 59.821 40.000 8.91 0.00 45.94 4.00
537 1691 3.865446 TCTGTGATACAGGCAATGTCAG 58.135 45.455 8.91 0.23 45.94 3.51
539 1693 2.571202 TGTGATACAGGCAATGTCAGGA 59.429 45.455 0.00 0.00 42.70 3.86
540 1694 3.008923 TGTGATACAGGCAATGTCAGGAA 59.991 43.478 0.00 0.00 42.70 3.36
541 1695 3.375299 GTGATACAGGCAATGTCAGGAAC 59.625 47.826 0.00 0.00 42.70 3.62
542 1696 3.008923 TGATACAGGCAATGTCAGGAACA 59.991 43.478 0.00 0.00 42.70 3.18
543 1697 2.363306 ACAGGCAATGTCAGGAACAA 57.637 45.000 0.00 0.00 42.37 2.83
544 1698 2.880443 ACAGGCAATGTCAGGAACAAT 58.120 42.857 0.00 0.00 42.37 2.71
546 1700 2.165030 CAGGCAATGTCAGGAACAATCC 59.835 50.000 0.00 0.00 46.98 3.01
556 1710 1.751437 GGAACAATCCCTAGCCACAC 58.249 55.000 0.00 0.00 40.10 3.82
557 1711 1.004277 GGAACAATCCCTAGCCACACA 59.996 52.381 0.00 0.00 40.10 3.72
558 1712 2.357154 GGAACAATCCCTAGCCACACAT 60.357 50.000 0.00 0.00 40.10 3.21
559 1713 2.425143 ACAATCCCTAGCCACACATG 57.575 50.000 0.00 0.00 0.00 3.21
569 1723 1.896183 CCACACATGGCGTCCAACA 60.896 57.895 0.00 0.00 39.82 3.33
570 1724 1.575922 CACACATGGCGTCCAACAG 59.424 57.895 0.00 0.09 36.95 3.16
571 1725 0.884259 CACACATGGCGTCCAACAGA 60.884 55.000 0.00 0.00 36.95 3.41
572 1726 0.603707 ACACATGGCGTCCAACAGAG 60.604 55.000 0.00 0.00 36.95 3.35
573 1727 0.320683 CACATGGCGTCCAACAGAGA 60.321 55.000 0.00 0.00 36.95 3.10
574 1728 0.036952 ACATGGCGTCCAACAGAGAG 60.037 55.000 0.00 0.00 36.95 3.20
575 1729 0.247460 CATGGCGTCCAACAGAGAGA 59.753 55.000 2.68 0.00 36.95 3.10
576 1730 0.534412 ATGGCGTCCAACAGAGAGAG 59.466 55.000 2.68 0.00 36.95 3.20
577 1731 0.539669 TGGCGTCCAACAGAGAGAGA 60.540 55.000 0.00 0.00 0.00 3.10
578 1732 0.603569 GGCGTCCAACAGAGAGAGAA 59.396 55.000 0.00 0.00 0.00 2.87
579 1733 1.403514 GGCGTCCAACAGAGAGAGAAG 60.404 57.143 0.00 0.00 0.00 2.85
580 1734 1.542030 GCGTCCAACAGAGAGAGAAGA 59.458 52.381 0.00 0.00 0.00 2.87
581 1735 2.029828 GCGTCCAACAGAGAGAGAAGAA 60.030 50.000 0.00 0.00 0.00 2.52
584 1738 3.258123 GTCCAACAGAGAGAGAAGAAGCT 59.742 47.826 0.00 0.00 0.00 3.74
585 1739 3.509575 TCCAACAGAGAGAGAAGAAGCTC 59.490 47.826 0.00 0.00 35.11 4.09
586 1740 3.368323 CCAACAGAGAGAGAAGAAGCTCC 60.368 52.174 0.00 0.00 35.49 4.70
587 1741 3.456380 ACAGAGAGAGAAGAAGCTCCT 57.544 47.619 0.00 0.00 35.49 3.69
588 1742 3.778265 ACAGAGAGAGAAGAAGCTCCTT 58.222 45.455 0.00 0.00 35.49 3.36
589 1743 4.159557 ACAGAGAGAGAAGAAGCTCCTTT 58.840 43.478 0.00 0.00 35.49 3.11
590 1744 5.329399 ACAGAGAGAGAAGAAGCTCCTTTA 58.671 41.667 0.00 0.00 35.49 1.85
591 1745 5.418840 ACAGAGAGAGAAGAAGCTCCTTTAG 59.581 44.000 0.00 0.00 35.49 1.85
604 1758 4.612932 CTCCTTTAGCAACAGAATGAGC 57.387 45.455 0.00 0.00 39.69 4.26
605 1759 3.347216 TCCTTTAGCAACAGAATGAGCC 58.653 45.455 0.00 0.00 40.45 4.70
606 1760 3.009473 TCCTTTAGCAACAGAATGAGCCT 59.991 43.478 0.00 0.00 40.45 4.58
607 1761 3.376546 CCTTTAGCAACAGAATGAGCCTC 59.623 47.826 0.00 0.00 40.45 4.70
608 1762 3.701205 TTAGCAACAGAATGAGCCTCA 57.299 42.857 0.00 0.00 40.45 3.86
610 1764 2.867624 AGCAACAGAATGAGCCTCAAA 58.132 42.857 0.00 0.00 40.45 2.69
612 1766 3.830755 AGCAACAGAATGAGCCTCAAAAT 59.169 39.130 0.00 0.00 40.45 1.82
613 1767 4.282703 AGCAACAGAATGAGCCTCAAAATT 59.717 37.500 0.00 0.00 40.45 1.82
614 1768 4.387862 GCAACAGAATGAGCCTCAAAATTG 59.612 41.667 0.00 1.21 39.69 2.32
615 1769 4.796038 ACAGAATGAGCCTCAAAATTGG 57.204 40.909 0.00 0.00 39.69 3.16
616 1770 4.410099 ACAGAATGAGCCTCAAAATTGGA 58.590 39.130 0.00 0.00 39.69 3.53
617 1771 4.219288 ACAGAATGAGCCTCAAAATTGGAC 59.781 41.667 0.00 0.00 39.69 4.02
618 1772 4.461781 CAGAATGAGCCTCAAAATTGGACT 59.538 41.667 0.00 0.00 39.69 3.85
619 1773 4.704057 AGAATGAGCCTCAAAATTGGACTC 59.296 41.667 0.00 0.00 0.00 3.36
620 1774 2.795329 TGAGCCTCAAAATTGGACTCC 58.205 47.619 0.00 0.00 0.00 3.85
621 1775 2.095461 GAGCCTCAAAATTGGACTCCC 58.905 52.381 0.00 0.00 0.00 4.30
622 1776 1.713078 AGCCTCAAAATTGGACTCCCT 59.287 47.619 0.00 0.00 0.00 4.20
623 1777 2.919602 AGCCTCAAAATTGGACTCCCTA 59.080 45.455 0.00 0.00 0.00 3.53
627 1781 4.530875 CTCAAAATTGGACTCCCTATGCT 58.469 43.478 0.00 0.00 0.00 3.79
628 1782 4.526970 TCAAAATTGGACTCCCTATGCTC 58.473 43.478 0.00 0.00 0.00 4.26
629 1783 4.018506 TCAAAATTGGACTCCCTATGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
631 1785 4.591321 AATTGGACTCCCTATGCTCAAA 57.409 40.909 0.00 0.00 0.00 2.69
633 1787 1.210478 TGGACTCCCTATGCTCAAAGC 59.790 52.381 0.00 0.00 42.82 3.51
649 2086 7.554243 GCTCAAAGCAAAAACTAACACTATC 57.446 36.000 0.00 0.00 41.89 2.08
650 2087 7.138736 GCTCAAAGCAAAAACTAACACTATCA 58.861 34.615 0.00 0.00 41.89 2.15
652 2089 9.515020 CTCAAAGCAAAAACTAACACTATCAAA 57.485 29.630 0.00 0.00 0.00 2.69
653 2090 9.515020 TCAAAGCAAAAACTAACACTATCAAAG 57.485 29.630 0.00 0.00 0.00 2.77
655 2092 9.869757 AAAGCAAAAACTAACACTATCAAAGTT 57.130 25.926 0.00 0.00 35.76 2.66
657 2094 9.301153 AGCAAAAACTAACACTATCAAAGTTTG 57.699 29.630 9.44 9.44 39.60 2.93
658 2095 9.083080 GCAAAAACTAACACTATCAAAGTTTGT 57.917 29.630 15.08 5.83 39.60 2.83
710 2732 2.029892 ATTGGGTTGGGGCAAGGTGA 62.030 55.000 0.00 0.00 0.00 4.02
718 2740 1.301954 GGGCAAGGTGACCCGTTAT 59.698 57.895 0.00 0.00 40.64 1.89
740 2762 1.570803 TGGAAGGCCCATTTTGATGG 58.429 50.000 0.00 0.00 40.82 3.51
741 2763 1.078490 TGGAAGGCCCATTTTGATGGA 59.922 47.619 0.00 0.00 44.39 3.41
743 2765 2.169144 GGAAGGCCCATTTTGATGGAAG 59.831 50.000 0.00 0.00 44.39 3.46
745 2767 0.178767 GGCCCATTTTGATGGAAGGC 59.821 55.000 6.99 2.42 44.39 4.35
746 2768 0.178767 GCCCATTTTGATGGAAGGCC 59.821 55.000 6.99 0.00 44.39 5.19
747 2769 0.832626 CCCATTTTGATGGAAGGCCC 59.167 55.000 0.00 0.00 44.39 5.80
763 2785 1.403687 GCCCTAGTCGGATCCTTGCT 61.404 60.000 10.75 7.44 33.16 3.91
764 2786 1.996798 CCCTAGTCGGATCCTTGCTA 58.003 55.000 10.75 8.19 33.16 3.49
825 2851 3.275400 CGAGATGTAGTCGGATCCTTG 57.725 52.381 10.75 0.00 33.66 3.61
830 2856 1.342076 TGTAGTCGGATCCTTGCTCCT 60.342 52.381 10.75 0.00 0.00 3.69
867 2894 2.668550 GCGACCCAACCAGGACAC 60.669 66.667 0.00 0.00 41.22 3.67
869 2896 2.516888 CGACCCAACCAGGACACCT 61.517 63.158 0.00 0.00 41.22 4.00
870 2897 1.189524 CGACCCAACCAGGACACCTA 61.190 60.000 0.00 0.00 41.22 3.08
872 2899 0.769247 ACCCAACCAGGACACCTAAC 59.231 55.000 0.00 0.00 41.22 2.34
879 2908 1.553884 CCAGGACACCTAACCTACCCA 60.554 57.143 0.00 0.00 34.87 4.51
928 2957 2.123726 ATCCCCCAATTCGGCAGC 60.124 61.111 0.00 0.00 0.00 5.25
1071 3100 6.154021 AGCTCCTTTATGTTGATTGCAATCTT 59.846 34.615 33.23 20.15 36.22 2.40
1133 3162 1.767127 TATATTTGGGCGTGCGCGTG 61.767 55.000 22.18 0.00 43.06 5.34
1244 3273 2.493501 GAGGAGGACGCGGGTTAC 59.506 66.667 12.47 3.21 0.00 2.50
1248 3277 1.602327 GGAGGACGCGGGTTACTTCT 61.602 60.000 12.47 0.00 0.00 2.85
1251 3280 2.100418 GAGGACGCGGGTTACTTCTTAT 59.900 50.000 12.47 0.00 0.00 1.73
1268 3297 4.168101 TCTTATGGGTTCTGGTCTCTGTT 58.832 43.478 0.00 0.00 0.00 3.16
1269 3298 2.867109 ATGGGTTCTGGTCTCTGTTG 57.133 50.000 0.00 0.00 0.00 3.33
1276 3305 0.946221 CTGGTCTCTGTTGGTGCGAC 60.946 60.000 0.00 0.00 0.00 5.19
1299 3328 2.427506 GTGGTGGAGTGGATCTGAAAC 58.572 52.381 0.00 0.00 0.00 2.78
1350 3379 4.284550 TGGGTGGAAGGCTGTGGC 62.285 66.667 0.00 0.00 37.82 5.01
1365 3394 2.749621 CTGTGGCCTAACTTGGATTGAC 59.250 50.000 3.32 0.00 0.00 3.18
1391 3420 4.943093 TGTGTTCATGATTCGATTGGTGAT 59.057 37.500 0.00 0.00 0.00 3.06
1511 3540 0.671472 CAACGGTTAAGGTCCCGGTC 60.671 60.000 0.00 0.00 41.06 4.79
1598 3630 7.881142 ACTATTTTCGGATTTGTTTGTCATCA 58.119 30.769 0.00 0.00 0.00 3.07
1758 3847 4.863491 AGCTTTGTTGTGAACTTGCTATG 58.137 39.130 0.00 0.00 33.11 2.23
1759 3848 3.426525 GCTTTGTTGTGAACTTGCTATGC 59.573 43.478 0.00 0.00 0.00 3.14
1769 3858 1.860950 ACTTGCTATGCGCTTATGTCG 59.139 47.619 9.73 0.00 40.11 4.35
1784 3873 2.704725 TGTCGATTTGCTTTGCTTCC 57.295 45.000 0.00 0.00 0.00 3.46
1786 3875 0.521291 TCGATTTGCTTTGCTTCCGG 59.479 50.000 0.00 0.00 0.00 5.14
1800 3889 1.557832 CTTCCGGTTTCCCTCATGGTA 59.442 52.381 0.00 0.00 34.77 3.25
1851 3940 9.830975 ATTTTTGTTGCTACATTTTAAGTTCCT 57.169 25.926 0.81 0.00 33.44 3.36
1852 3941 8.641499 TTTTGTTGCTACATTTTAAGTTCCTG 57.359 30.769 0.81 0.00 33.44 3.86
1853 3942 5.768317 TGTTGCTACATTTTAAGTTCCTGC 58.232 37.500 0.00 0.00 0.00 4.85
1854 3943 5.534654 TGTTGCTACATTTTAAGTTCCTGCT 59.465 36.000 0.00 0.00 0.00 4.24
1855 3944 5.627499 TGCTACATTTTAAGTTCCTGCTG 57.373 39.130 0.00 0.00 0.00 4.41
1856 3945 4.082787 TGCTACATTTTAAGTTCCTGCTGC 60.083 41.667 0.00 0.00 0.00 5.25
1857 3946 4.156739 GCTACATTTTAAGTTCCTGCTGCT 59.843 41.667 0.00 0.00 0.00 4.24
1858 3947 4.510038 ACATTTTAAGTTCCTGCTGCTG 57.490 40.909 0.00 0.00 0.00 4.41
1859 3948 3.891366 ACATTTTAAGTTCCTGCTGCTGT 59.109 39.130 0.00 0.00 0.00 4.40
1860 3949 4.342092 ACATTTTAAGTTCCTGCTGCTGTT 59.658 37.500 0.00 0.00 0.00 3.16
1861 3950 3.988379 TTTAAGTTCCTGCTGCTGTTG 57.012 42.857 0.00 0.00 0.00 3.33
1862 3951 2.638480 TAAGTTCCTGCTGCTGTTGT 57.362 45.000 0.00 0.00 0.00 3.32
1863 3952 2.638480 AAGTTCCTGCTGCTGTTGTA 57.362 45.000 0.00 0.00 0.00 2.41
1864 3953 2.175878 AGTTCCTGCTGCTGTTGTAG 57.824 50.000 0.00 0.00 0.00 2.74
1891 3980 2.037251 ACTCGTTCCACAGCACTGTAAT 59.963 45.455 2.38 0.00 42.83 1.89
2086 4177 8.726988 GCAATTGGTGTTGTAATCTACTTCTAA 58.273 33.333 7.72 0.00 0.00 2.10
2143 4234 5.454329 CCTGAGCTTGTCCATTAGATCATGA 60.454 44.000 0.00 0.00 36.35 3.07
2166 4257 9.706691 ATGATTTATAACTACATACCCTCGTTG 57.293 33.333 0.00 0.00 0.00 4.10
2179 4293 3.264450 ACCCTCGTTGGAGATTTTCATCT 59.736 43.478 0.00 0.00 43.27 2.90
2213 4327 7.681939 TCAATTTCTTTTAGCATCCGTAAGT 57.318 32.000 0.00 0.00 0.00 2.24
2434 4551 2.906389 TGAGATGGTAACCAAGCTGACT 59.094 45.455 0.00 0.00 36.95 3.41
2538 4655 3.677424 GCTCAGAGGTACCTTGACATGAC 60.677 52.174 17.53 0.00 0.00 3.06
2773 4902 7.441760 GCTACTGTCATTTGATTCTCTGATCAT 59.558 37.037 0.00 0.00 36.05 2.45
2790 4919 7.936584 TCTGATCATTTAGTTGGTTTCGTTTT 58.063 30.769 0.00 0.00 0.00 2.43
2800 4929 7.090953 AGTTGGTTTCGTTTTAAGTCAATCA 57.909 32.000 0.00 0.00 0.00 2.57
2872 5279 5.313280 AGGTGTGGTACAGGACAATTAAA 57.687 39.130 0.00 0.00 41.80 1.52
2885 5292 6.963242 CAGGACAATTAAACATCTGTCGAATG 59.037 38.462 0.00 0.00 39.26 2.67
2938 5345 9.060347 CATAATTTCTGCACTAAGGACATGTAT 57.940 33.333 0.00 0.00 0.00 2.29
2940 5347 8.668510 AATTTCTGCACTAAGGACATGTATAG 57.331 34.615 0.00 4.83 0.00 1.31
2941 5348 6.791867 TTCTGCACTAAGGACATGTATAGT 57.208 37.500 0.00 5.50 0.00 2.12
2942 5349 6.149129 TCTGCACTAAGGACATGTATAGTG 57.851 41.667 26.38 26.38 45.04 2.74
2943 5350 5.069119 TCTGCACTAAGGACATGTATAGTGG 59.931 44.000 28.86 20.35 43.36 4.00
2944 5351 4.714802 TGCACTAAGGACATGTATAGTGGT 59.285 41.667 28.86 12.12 43.36 4.16
2945 5352 5.188948 TGCACTAAGGACATGTATAGTGGTT 59.811 40.000 28.86 10.15 43.36 3.67
2946 5353 5.523916 GCACTAAGGACATGTATAGTGGTTG 59.476 44.000 28.86 15.72 43.36 3.77
2947 5354 6.629515 GCACTAAGGACATGTATAGTGGTTGA 60.630 42.308 28.86 1.82 43.36 3.18
2948 5355 7.500992 CACTAAGGACATGTATAGTGGTTGAT 58.499 38.462 24.63 2.87 40.83 2.57
2949 5356 8.638873 CACTAAGGACATGTATAGTGGTTGATA 58.361 37.037 24.63 0.00 40.83 2.15
2950 5357 9.209048 ACTAAGGACATGTATAGTGGTTGATAA 57.791 33.333 14.36 0.00 0.00 1.75
2951 5358 9.698309 CTAAGGACATGTATAGTGGTTGATAAG 57.302 37.037 0.00 0.00 0.00 1.73
2952 5359 7.914427 AGGACATGTATAGTGGTTGATAAGA 57.086 36.000 0.00 0.00 0.00 2.10
2953 5360 8.497910 AGGACATGTATAGTGGTTGATAAGAT 57.502 34.615 0.00 0.00 0.00 2.40
2954 5361 8.370940 AGGACATGTATAGTGGTTGATAAGATG 58.629 37.037 0.00 0.00 0.00 2.90
2955 5362 8.367911 GGACATGTATAGTGGTTGATAAGATGA 58.632 37.037 0.00 0.00 0.00 2.92
2956 5363 9.935241 GACATGTATAGTGGTTGATAAGATGAT 57.065 33.333 0.00 0.00 0.00 2.45
2965 5372 6.910191 TGGTTGATAAGATGATAACCATGGT 58.090 36.000 13.00 13.00 44.08 3.55
2966 5373 7.353525 TGGTTGATAAGATGATAACCATGGTT 58.646 34.615 31.85 31.85 44.08 3.67
2967 5374 7.285172 TGGTTGATAAGATGATAACCATGGTTG 59.715 37.037 35.49 2.90 44.08 3.77
2976 5383 3.698765 CCATGGTTGGCTGGGAAC 58.301 61.111 2.57 0.00 35.85 3.62
2977 5384 1.077265 CCATGGTTGGCTGGGAACT 59.923 57.895 2.57 0.00 35.85 3.01
2978 5385 0.542702 CCATGGTTGGCTGGGAACTT 60.543 55.000 2.57 0.00 35.85 2.66
2979 5386 0.890683 CATGGTTGGCTGGGAACTTC 59.109 55.000 0.00 0.00 0.00 3.01
2980 5387 0.482446 ATGGTTGGCTGGGAACTTCA 59.518 50.000 0.00 0.00 0.00 3.02
2981 5388 0.482446 TGGTTGGCTGGGAACTTCAT 59.518 50.000 0.00 0.00 0.00 2.57
2982 5389 1.707989 TGGTTGGCTGGGAACTTCATA 59.292 47.619 0.00 0.00 0.00 2.15
2983 5390 2.109128 TGGTTGGCTGGGAACTTCATAA 59.891 45.455 0.00 0.00 0.00 1.90
2984 5391 3.245586 TGGTTGGCTGGGAACTTCATAAT 60.246 43.478 0.00 0.00 0.00 1.28
2985 5392 3.769300 GGTTGGCTGGGAACTTCATAATT 59.231 43.478 0.00 0.00 0.00 1.40
2986 5393 4.222810 GGTTGGCTGGGAACTTCATAATTT 59.777 41.667 0.00 0.00 0.00 1.82
2987 5394 5.410924 GTTGGCTGGGAACTTCATAATTTC 58.589 41.667 0.00 0.00 0.00 2.17
2988 5395 4.934356 TGGCTGGGAACTTCATAATTTCT 58.066 39.130 0.00 0.00 0.00 2.52
2989 5396 4.706476 TGGCTGGGAACTTCATAATTTCTG 59.294 41.667 0.00 0.00 0.00 3.02
2990 5397 4.440663 GGCTGGGAACTTCATAATTTCTGC 60.441 45.833 0.00 0.00 0.00 4.26
2991 5398 4.158394 GCTGGGAACTTCATAATTTCTGCA 59.842 41.667 0.00 0.00 0.00 4.41
2992 5399 5.643379 TGGGAACTTCATAATTTCTGCAC 57.357 39.130 0.00 0.00 0.00 4.57
2993 5400 5.324409 TGGGAACTTCATAATTTCTGCACT 58.676 37.500 0.00 0.00 0.00 4.40
2994 5401 6.480763 TGGGAACTTCATAATTTCTGCACTA 58.519 36.000 0.00 0.00 0.00 2.74
2995 5402 6.374333 TGGGAACTTCATAATTTCTGCACTAC 59.626 38.462 0.00 0.00 0.00 2.73
2996 5403 6.374333 GGGAACTTCATAATTTCTGCACTACA 59.626 38.462 0.00 0.00 0.00 2.74
2997 5404 7.067494 GGGAACTTCATAATTTCTGCACTACAT 59.933 37.037 0.00 0.00 0.00 2.29
2998 5405 9.109393 GGAACTTCATAATTTCTGCACTACATA 57.891 33.333 0.00 0.00 0.00 2.29
3015 5422 7.926555 GCACTACATATACAGTGGTTGATAAGT 59.073 37.037 14.51 0.00 42.00 2.24
3033 5440 8.484214 TGATAAGTTAGTCTCATCATAAGCCT 57.516 34.615 0.00 0.00 26.73 4.58
3055 5482 4.564041 TGCCACATAAAAATGATTGCGTT 58.436 34.783 0.00 0.00 0.00 4.84
3091 5519 9.732130 TTAAATAAAATGGGGAAGAACATTTGG 57.268 29.630 3.71 0.00 44.11 3.28
3109 5575 5.968528 TTTGGTGCCGTAAACATATCTTT 57.031 34.783 0.00 0.00 0.00 2.52
3110 5576 5.968528 TTGGTGCCGTAAACATATCTTTT 57.031 34.783 0.00 0.00 0.00 2.27
3127 5593 1.679139 TTTGCACCACAAGAGACCTG 58.321 50.000 0.00 0.00 40.06 4.00
3133 5599 0.109342 CCACAAGAGACCTGCCACTT 59.891 55.000 0.00 0.00 0.00 3.16
3136 5602 3.560025 CCACAAGAGACCTGCCACTTTAT 60.560 47.826 0.00 0.00 0.00 1.40
3137 5603 4.323485 CCACAAGAGACCTGCCACTTTATA 60.323 45.833 0.00 0.00 0.00 0.98
3138 5604 4.631813 CACAAGAGACCTGCCACTTTATAC 59.368 45.833 0.00 0.00 0.00 1.47
3139 5605 4.192317 CAAGAGACCTGCCACTTTATACC 58.808 47.826 0.00 0.00 0.00 2.73
3141 5607 4.104831 AGAGACCTGCCACTTTATACCTT 58.895 43.478 0.00 0.00 0.00 3.50
3142 5608 4.536489 AGAGACCTGCCACTTTATACCTTT 59.464 41.667 0.00 0.00 0.00 3.11
3143 5609 5.014228 AGAGACCTGCCACTTTATACCTTTT 59.986 40.000 0.00 0.00 0.00 2.27
3144 5610 5.641155 AGACCTGCCACTTTATACCTTTTT 58.359 37.500 0.00 0.00 0.00 1.94
3193 5686 9.832445 ATAAGGTTGATTGTAACATATCGAAGT 57.168 29.630 0.00 0.00 32.22 3.01
3194 5687 7.539712 AGGTTGATTGTAACATATCGAAGTG 57.460 36.000 0.00 0.00 32.22 3.16
3195 5688 6.538742 AGGTTGATTGTAACATATCGAAGTGG 59.461 38.462 0.00 0.00 32.22 4.00
3196 5689 6.537301 GGTTGATTGTAACATATCGAAGTGGA 59.463 38.462 0.00 0.00 32.22 4.02
3197 5690 7.254455 GGTTGATTGTAACATATCGAAGTGGAG 60.254 40.741 0.00 0.00 32.22 3.86
3198 5691 5.753438 TGATTGTAACATATCGAAGTGGAGC 59.247 40.000 0.00 0.00 0.00 4.70
3199 5692 5.339008 TTGTAACATATCGAAGTGGAGCT 57.661 39.130 0.00 0.00 0.00 4.09
3200 5693 4.682787 TGTAACATATCGAAGTGGAGCTG 58.317 43.478 0.00 0.00 0.00 4.24
3201 5694 3.895232 AACATATCGAAGTGGAGCTGT 57.105 42.857 0.00 0.00 0.00 4.40
3202 5695 3.170791 ACATATCGAAGTGGAGCTGTG 57.829 47.619 0.00 0.00 0.00 3.66
3203 5696 2.760650 ACATATCGAAGTGGAGCTGTGA 59.239 45.455 0.00 0.00 0.00 3.58
3204 5697 3.195610 ACATATCGAAGTGGAGCTGTGAA 59.804 43.478 0.00 0.00 0.00 3.18
3278 5773 5.309638 CACTCCATATCCTCGAGAGACTAA 58.690 45.833 15.71 0.03 35.39 2.24
3279 5774 5.943416 CACTCCATATCCTCGAGAGACTAAT 59.057 44.000 15.71 2.33 35.39 1.73
3280 5775 6.093495 CACTCCATATCCTCGAGAGACTAATC 59.907 46.154 15.71 0.00 35.39 1.75
3281 5776 5.502079 TCCATATCCTCGAGAGACTAATCC 58.498 45.833 15.71 0.00 35.39 3.01
3282 5777 4.334203 CCATATCCTCGAGAGACTAATCCG 59.666 50.000 15.71 0.00 35.39 4.18
3284 5779 3.555527 TCCTCGAGAGACTAATCCGAA 57.444 47.619 15.71 0.00 35.39 4.30
3285 5780 3.204526 TCCTCGAGAGACTAATCCGAAC 58.795 50.000 15.71 0.00 35.39 3.95
3286 5781 2.291190 CCTCGAGAGACTAATCCGAACC 59.709 54.545 15.71 0.00 35.39 3.62
3295 5792 2.027469 ACTAATCCGAACCCTGTCAACC 60.027 50.000 0.00 0.00 0.00 3.77
3318 5815 3.880490 ACGAAGCAAGAACCATTGTGTTA 59.120 39.130 0.00 0.00 32.56 2.41
3363 5860 7.038017 ACCACTATCCAACATATGAATCCCTAG 60.038 40.741 10.38 5.74 0.00 3.02
3387 5884 4.988598 CAACAGCCCCTGCGTCGT 62.989 66.667 0.00 0.00 44.33 4.34
3388 5885 4.250305 AACAGCCCCTGCGTCGTT 62.250 61.111 0.00 0.00 44.33 3.85
3389 5886 4.681978 ACAGCCCCTGCGTCGTTC 62.682 66.667 0.00 0.00 44.33 3.95
3393 5890 4.760047 CCCCTGCGTCGTTCCCTG 62.760 72.222 0.00 0.00 0.00 4.45
3395 5892 4.680237 CCTGCGTCGTTCCCTGCA 62.680 66.667 0.00 0.00 35.75 4.41
3396 5893 3.414700 CTGCGTCGTTCCCTGCAC 61.415 66.667 0.00 0.00 33.12 4.57
3448 5945 2.787866 CTCCTCCCTTCCTCCCCA 59.212 66.667 0.00 0.00 0.00 4.96
3449 5946 1.690985 CTCCTCCCTTCCTCCCCAC 60.691 68.421 0.00 0.00 0.00 4.61
3571 6076 0.837272 ATCCCCGATTTGATCCACGT 59.163 50.000 0.00 0.00 0.00 4.49
3572 6077 0.177141 TCCCCGATTTGATCCACGTC 59.823 55.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.370587 CTCCTCCTCTCACGTCGTCC 61.371 65.000 0.00 0.00 0.00 4.79
1 2 1.370587 CCTCCTCCTCTCACGTCGTC 61.371 65.000 0.00 0.00 0.00 4.20
2 3 1.377463 CCTCCTCCTCTCACGTCGT 60.377 63.158 0.00 0.00 0.00 4.34
3 4 2.766400 GCCTCCTCCTCTCACGTCG 61.766 68.421 0.00 0.00 0.00 5.12
4 5 1.679305 TGCCTCCTCCTCTCACGTC 60.679 63.158 0.00 0.00 0.00 4.34
5 6 1.979693 GTGCCTCCTCCTCTCACGT 60.980 63.158 0.00 0.00 0.00 4.49
6 7 1.536073 TTGTGCCTCCTCCTCTCACG 61.536 60.000 0.00 0.00 0.00 4.35
7 8 0.036858 GTTGTGCCTCCTCCTCTCAC 60.037 60.000 0.00 0.00 0.00 3.51
8 9 1.536073 CGTTGTGCCTCCTCCTCTCA 61.536 60.000 0.00 0.00 0.00 3.27
9 10 1.216710 CGTTGTGCCTCCTCCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
10 11 1.534235 ACGTTGTGCCTCCTCCTCT 60.534 57.895 0.00 0.00 0.00 3.69
11 12 1.079750 GACGTTGTGCCTCCTCCTC 60.080 63.158 0.00 0.00 0.00 3.71
12 13 2.932234 CGACGTTGTGCCTCCTCCT 61.932 63.158 0.00 0.00 0.00 3.69
13 14 2.432628 CGACGTTGTGCCTCCTCC 60.433 66.667 0.00 0.00 0.00 4.30
14 15 3.112709 GCGACGTTGTGCCTCCTC 61.113 66.667 4.37 0.00 0.00 3.71
20 21 4.059459 CGACAGGCGACGTTGTGC 62.059 66.667 11.03 2.12 44.57 4.57
21 22 4.059459 GCGACAGGCGACGTTGTG 62.059 66.667 0.00 0.00 44.57 3.33
51 52 1.647545 CTATGGTGCCAGCGTGGTTG 61.648 60.000 0.00 0.00 40.46 3.77
52 53 1.377202 CTATGGTGCCAGCGTGGTT 60.377 57.895 0.00 0.00 40.46 3.67
53 54 2.268920 CTATGGTGCCAGCGTGGT 59.731 61.111 0.00 0.00 40.46 4.16
54 55 3.204827 GCTATGGTGCCAGCGTGG 61.205 66.667 0.00 0.00 41.55 4.94
58 59 4.175337 TCCCGCTATGGTGCCAGC 62.175 66.667 0.00 0.00 35.15 4.85
59 60 2.203070 GTCCCGCTATGGTGCCAG 60.203 66.667 0.00 0.00 35.15 4.85
60 61 2.687200 AGTCCCGCTATGGTGCCA 60.687 61.111 0.00 0.00 35.15 4.92
61 62 2.109181 GAGTCCCGCTATGGTGCC 59.891 66.667 0.00 0.00 35.15 5.01
62 63 2.109181 GGAGTCCCGCTATGGTGC 59.891 66.667 0.00 0.00 35.15 5.01
63 64 2.822399 GGGAGTCCCGCTATGGTG 59.178 66.667 13.89 0.00 32.13 4.17
72 73 2.037527 ACTCACCGAGGGAGTCCC 59.962 66.667 21.81 21.81 41.63 4.46
76 77 3.827898 GGCGACTCACCGAGGGAG 61.828 72.222 2.07 2.07 38.36 4.30
100 101 4.789075 TTCGGTCTACAGCGGCGC 62.789 66.667 26.86 26.86 43.94 6.53
109 110 3.529533 CTTCTCCTACTCGTTCGGTCTA 58.470 50.000 0.00 0.00 0.00 2.59
117 118 1.569548 TGGGATCCTTCTCCTACTCGT 59.430 52.381 12.58 0.00 35.50 4.18
143 144 2.213499 GACACTTGTCACAACCTGGAG 58.787 52.381 0.00 0.00 44.18 3.86
171 172 2.028112 GGTGGTGAGAAGTGATGCACTA 60.028 50.000 0.00 0.00 44.62 2.74
173 174 1.160137 GGTGGTGAGAAGTGATGCAC 58.840 55.000 0.00 0.00 34.10 4.57
178 179 2.225382 TATCCGGTGGTGAGAAGTGA 57.775 50.000 0.00 0.00 0.00 3.41
184 185 1.227263 CGCCTTATCCGGTGGTGAG 60.227 63.158 0.00 0.00 33.56 3.51
348 349 2.671632 GCTCTTTGGTACTCCAGACGTC 60.672 54.545 7.70 7.70 45.22 4.34
349 350 1.272769 GCTCTTTGGTACTCCAGACGT 59.727 52.381 0.00 0.00 45.22 4.34
350 351 1.404315 GGCTCTTTGGTACTCCAGACG 60.404 57.143 0.00 0.00 45.22 4.18
374 1528 4.833390 AGGATTTTCTTTAGGACTCCACG 58.167 43.478 0.00 0.00 0.00 4.94
375 1529 7.184067 TCTAGGATTTTCTTTAGGACTCCAC 57.816 40.000 0.00 0.00 0.00 4.02
379 1533 7.037945 ACAAGCTCTAGGATTTTCTTTAGGACT 60.038 37.037 0.00 0.00 0.00 3.85
402 1556 2.418628 GGCGCATAGTCTTGCTAAACAA 59.581 45.455 10.83 0.00 40.54 2.83
422 1576 4.939509 AAATGGTTTTATGTCGTCGAGG 57.060 40.909 0.00 0.00 0.00 4.63
467 1621 8.458575 TCCCTAGTTTACCCCTAAAAAGAAATT 58.541 33.333 0.00 0.00 0.00 1.82
469 1623 7.405228 TCCCTAGTTTACCCCTAAAAAGAAA 57.595 36.000 0.00 0.00 0.00 2.52
470 1624 7.593351 ATCCCTAGTTTACCCCTAAAAAGAA 57.407 36.000 0.00 0.00 0.00 2.52
472 1626 8.660295 AAAATCCCTAGTTTACCCCTAAAAAG 57.340 34.615 0.00 0.00 0.00 2.27
475 1629 9.925545 GAATAAAATCCCTAGTTTACCCCTAAA 57.074 33.333 0.00 0.00 28.76 1.85
476 1630 9.071334 TGAATAAAATCCCTAGTTTACCCCTAA 57.929 33.333 0.00 0.00 28.76 2.69
477 1631 8.641498 TGAATAAAATCCCTAGTTTACCCCTA 57.359 34.615 0.00 0.00 28.76 3.53
478 1632 7.533923 TGAATAAAATCCCTAGTTTACCCCT 57.466 36.000 0.00 0.00 28.76 4.79
479 1633 8.472413 GTTTGAATAAAATCCCTAGTTTACCCC 58.528 37.037 0.00 0.00 28.76 4.95
480 1634 9.027202 TGTTTGAATAAAATCCCTAGTTTACCC 57.973 33.333 0.00 0.00 28.76 3.69
489 1643 8.987890 CGTTTTGAATGTTTGAATAAAATCCCT 58.012 29.630 0.00 0.00 0.00 4.20
494 1648 9.360093 ACAGACGTTTTGAATGTTTGAATAAAA 57.640 25.926 9.63 0.00 36.37 1.52
495 1649 8.802856 CACAGACGTTTTGAATGTTTGAATAAA 58.197 29.630 9.63 0.00 36.37 1.40
496 1650 8.184848 TCACAGACGTTTTGAATGTTTGAATAA 58.815 29.630 9.63 0.00 36.37 1.40
497 1651 7.698628 TCACAGACGTTTTGAATGTTTGAATA 58.301 30.769 9.63 0.00 36.37 1.75
498 1652 6.559810 TCACAGACGTTTTGAATGTTTGAAT 58.440 32.000 9.63 0.00 36.37 2.57
501 1655 6.909895 TGTATCACAGACGTTTTGAATGTTTG 59.090 34.615 7.85 3.00 38.19 2.93
502 1656 7.022055 TGTATCACAGACGTTTTGAATGTTT 57.978 32.000 7.85 0.00 0.00 2.83
503 1657 6.612247 TGTATCACAGACGTTTTGAATGTT 57.388 33.333 7.85 0.00 0.00 2.71
517 1671 2.941064 CCTGACATTGCCTGTATCACAG 59.059 50.000 0.00 0.00 45.53 3.66
518 1672 2.571202 TCCTGACATTGCCTGTATCACA 59.429 45.455 0.00 0.00 38.54 3.58
520 1674 3.008923 TGTTCCTGACATTGCCTGTATCA 59.991 43.478 0.00 0.00 38.54 2.15
521 1675 3.609853 TGTTCCTGACATTGCCTGTATC 58.390 45.455 0.00 0.00 38.54 2.24
522 1676 3.719268 TGTTCCTGACATTGCCTGTAT 57.281 42.857 0.00 0.00 38.54 2.29
523 1677 3.500448 TTGTTCCTGACATTGCCTGTA 57.500 42.857 0.00 0.00 38.54 2.74
524 1678 2.363306 TTGTTCCTGACATTGCCTGT 57.637 45.000 0.00 0.00 42.15 4.00
526 1680 2.450476 GGATTGTTCCTGACATTGCCT 58.550 47.619 0.00 0.00 39.14 4.75
527 1681 1.478105 GGGATTGTTCCTGACATTGCC 59.522 52.381 0.00 0.00 41.04 4.52
528 1682 2.450476 AGGGATTGTTCCTGACATTGC 58.550 47.619 0.00 0.00 42.20 3.56
531 1685 2.173569 GGCTAGGGATTGTTCCTGACAT 59.826 50.000 0.00 0.00 42.20 3.06
532 1686 1.559682 GGCTAGGGATTGTTCCTGACA 59.440 52.381 0.00 0.00 42.20 3.58
533 1687 1.559682 TGGCTAGGGATTGTTCCTGAC 59.440 52.381 0.00 0.00 42.20 3.51
534 1688 1.559682 GTGGCTAGGGATTGTTCCTGA 59.440 52.381 0.00 0.00 42.20 3.86
535 1689 1.281867 TGTGGCTAGGGATTGTTCCTG 59.718 52.381 0.00 0.00 42.20 3.86
537 1691 1.004277 TGTGTGGCTAGGGATTGTTCC 59.996 52.381 0.00 0.00 41.77 3.62
539 1693 2.621407 CCATGTGTGGCTAGGGATTGTT 60.621 50.000 0.00 0.00 39.01 2.83
540 1694 1.064463 CCATGTGTGGCTAGGGATTGT 60.064 52.381 0.00 0.00 39.01 2.71
541 1695 1.683943 CCATGTGTGGCTAGGGATTG 58.316 55.000 0.00 0.00 39.01 2.67
552 1706 0.884259 TCTGTTGGACGCCATGTGTG 60.884 55.000 0.00 0.00 31.53 3.82
553 1707 0.603707 CTCTGTTGGACGCCATGTGT 60.604 55.000 0.00 0.00 31.53 3.72
554 1708 0.320683 TCTCTGTTGGACGCCATGTG 60.321 55.000 0.00 0.00 31.53 3.21
556 1710 0.247460 TCTCTCTGTTGGACGCCATG 59.753 55.000 0.00 0.00 31.53 3.66
557 1711 0.534412 CTCTCTCTGTTGGACGCCAT 59.466 55.000 0.00 0.00 31.53 4.40
558 1712 0.539669 TCTCTCTCTGTTGGACGCCA 60.540 55.000 0.00 0.00 0.00 5.69
559 1713 0.603569 TTCTCTCTCTGTTGGACGCC 59.396 55.000 0.00 0.00 0.00 5.68
560 1714 1.542030 TCTTCTCTCTCTGTTGGACGC 59.458 52.381 0.00 0.00 0.00 5.19
562 1716 3.258123 AGCTTCTTCTCTCTCTGTTGGAC 59.742 47.826 0.00 0.00 0.00 4.02
563 1717 3.505386 AGCTTCTTCTCTCTCTGTTGGA 58.495 45.455 0.00 0.00 0.00 3.53
564 1718 3.368323 GGAGCTTCTTCTCTCTCTGTTGG 60.368 52.174 0.00 0.00 33.70 3.77
565 1719 3.511146 AGGAGCTTCTTCTCTCTCTGTTG 59.489 47.826 0.00 0.00 33.70 3.33
566 1720 3.778265 AGGAGCTTCTTCTCTCTCTGTT 58.222 45.455 0.00 0.00 33.70 3.16
567 1721 3.456380 AGGAGCTTCTTCTCTCTCTGT 57.544 47.619 0.00 0.00 33.70 3.41
584 1738 3.009473 AGGCTCATTCTGTTGCTAAAGGA 59.991 43.478 0.00 0.00 0.00 3.36
585 1739 3.350833 AGGCTCATTCTGTTGCTAAAGG 58.649 45.455 0.00 0.00 0.00 3.11
586 1740 4.005650 TGAGGCTCATTCTGTTGCTAAAG 58.994 43.478 14.43 0.00 0.00 1.85
587 1741 4.019792 TGAGGCTCATTCTGTTGCTAAA 57.980 40.909 14.43 0.00 0.00 1.85
588 1742 3.701205 TGAGGCTCATTCTGTTGCTAA 57.299 42.857 14.43 0.00 0.00 3.09
589 1743 3.701205 TTGAGGCTCATTCTGTTGCTA 57.299 42.857 19.50 0.00 0.00 3.49
590 1744 2.574006 TTGAGGCTCATTCTGTTGCT 57.426 45.000 19.50 0.00 0.00 3.91
591 1745 3.648339 TTTTGAGGCTCATTCTGTTGC 57.352 42.857 19.50 0.00 0.00 4.17
592 1746 4.927425 CCAATTTTGAGGCTCATTCTGTTG 59.073 41.667 19.50 16.94 0.00 3.33
593 1747 4.834496 TCCAATTTTGAGGCTCATTCTGTT 59.166 37.500 19.50 6.66 0.00 3.16
597 1751 4.142293 GGAGTCCAATTTTGAGGCTCATTC 60.142 45.833 19.50 0.00 34.16 2.67
598 1752 3.766051 GGAGTCCAATTTTGAGGCTCATT 59.234 43.478 19.50 7.05 34.16 2.57
599 1753 3.359950 GGAGTCCAATTTTGAGGCTCAT 58.640 45.455 19.50 0.00 34.16 2.90
600 1754 2.555227 GGGAGTCCAATTTTGAGGCTCA 60.555 50.000 14.43 14.43 34.16 4.26
601 1755 2.095461 GGGAGTCCAATTTTGAGGCTC 58.905 52.381 12.30 7.79 32.75 4.70
603 1757 2.222227 AGGGAGTCCAATTTTGAGGC 57.778 50.000 12.30 0.00 34.83 4.70
604 1758 3.633986 GCATAGGGAGTCCAATTTTGAGG 59.366 47.826 12.30 0.00 34.83 3.86
605 1759 4.530875 AGCATAGGGAGTCCAATTTTGAG 58.469 43.478 12.30 0.00 34.83 3.02
606 1760 4.018506 TGAGCATAGGGAGTCCAATTTTGA 60.019 41.667 12.30 0.00 34.83 2.69
607 1761 4.272489 TGAGCATAGGGAGTCCAATTTTG 58.728 43.478 12.30 2.93 34.83 2.44
608 1762 4.591321 TGAGCATAGGGAGTCCAATTTT 57.409 40.909 12.30 0.00 34.83 1.82
610 1764 4.530875 CTTTGAGCATAGGGAGTCCAATT 58.469 43.478 12.30 0.00 34.83 2.32
612 1766 2.356125 GCTTTGAGCATAGGGAGTCCAA 60.356 50.000 12.30 0.00 41.89 3.53
613 1767 1.210478 GCTTTGAGCATAGGGAGTCCA 59.790 52.381 12.30 0.00 41.89 4.02
614 1768 1.960417 GCTTTGAGCATAGGGAGTCC 58.040 55.000 0.00 0.00 41.89 3.85
627 1781 9.515020 CTTTGATAGTGTTAGTTTTTGCTTTGA 57.485 29.630 0.00 0.00 0.00 2.69
628 1782 9.301153 ACTTTGATAGTGTTAGTTTTTGCTTTG 57.699 29.630 0.00 0.00 35.19 2.77
629 1783 9.869757 AACTTTGATAGTGTTAGTTTTTGCTTT 57.130 25.926 0.00 0.00 37.12 3.51
631 1785 9.301153 CAAACTTTGATAGTGTTAGTTTTTGCT 57.699 29.630 0.00 0.00 37.04 3.91
682 2704 3.053320 TGCCCCAACCCAATTTTTCTTTT 60.053 39.130 0.00 0.00 0.00 2.27
688 2710 0.770499 CCTTGCCCCAACCCAATTTT 59.230 50.000 0.00 0.00 0.00 1.82
710 2732 0.182775 GGCCTTCCATCATAACGGGT 59.817 55.000 0.00 0.00 0.00 5.28
731 2753 3.685550 CGACTAGGGCCTTCCATCAAAAT 60.686 47.826 13.45 0.00 38.24 1.82
732 2754 2.355716 CGACTAGGGCCTTCCATCAAAA 60.356 50.000 13.45 0.00 38.24 2.44
733 2755 1.209504 CGACTAGGGCCTTCCATCAAA 59.790 52.381 13.45 0.00 38.24 2.69
734 2756 0.830648 CGACTAGGGCCTTCCATCAA 59.169 55.000 13.45 0.00 38.24 2.57
735 2757 1.048724 CCGACTAGGGCCTTCCATCA 61.049 60.000 13.45 0.00 38.24 3.07
736 2758 0.759436 TCCGACTAGGGCCTTCCATC 60.759 60.000 13.45 3.52 41.52 3.51
737 2759 0.104934 ATCCGACTAGGGCCTTCCAT 60.105 55.000 13.45 0.00 41.52 3.41
738 2760 0.759436 GATCCGACTAGGGCCTTCCA 60.759 60.000 13.45 0.00 41.52 3.53
739 2761 1.473497 GGATCCGACTAGGGCCTTCC 61.473 65.000 13.45 6.94 41.52 3.46
740 2762 0.470268 AGGATCCGACTAGGGCCTTC 60.470 60.000 13.45 2.50 40.65 3.46
741 2763 0.031010 AAGGATCCGACTAGGGCCTT 60.031 55.000 13.45 0.00 44.63 4.35
743 2765 1.749033 CAAGGATCCGACTAGGGCC 59.251 63.158 5.98 0.00 41.52 5.80
745 2767 1.996798 TAGCAAGGATCCGACTAGGG 58.003 55.000 5.98 0.00 41.52 3.53
746 2768 2.494073 GGATAGCAAGGATCCGACTAGG 59.506 54.545 5.98 0.00 42.97 3.02
747 2769 2.494073 GGGATAGCAAGGATCCGACTAG 59.506 54.545 5.98 0.00 43.43 2.57
825 2851 1.073284 TGGTAAACTTGGACCAGGAGC 59.927 52.381 11.16 0.00 40.87 4.70
830 2856 2.691011 GCACTTTGGTAAACTTGGACCA 59.309 45.455 0.00 0.00 44.08 4.02
867 2894 3.649843 TGTATGGAGTGGGTAGGTTAGG 58.350 50.000 0.00 0.00 0.00 2.69
869 2896 5.603813 GGTTATGTATGGAGTGGGTAGGTTA 59.396 44.000 0.00 0.00 0.00 2.85
870 2897 4.411212 GGTTATGTATGGAGTGGGTAGGTT 59.589 45.833 0.00 0.00 0.00 3.50
872 2899 3.326880 GGGTTATGTATGGAGTGGGTAGG 59.673 52.174 0.00 0.00 0.00 3.18
879 2908 0.391597 CGCCGGGTTATGTATGGAGT 59.608 55.000 2.18 0.00 0.00 3.85
928 2957 1.566211 TGCTTGGAGAAGGAGGAGAG 58.434 55.000 0.00 0.00 0.00 3.20
1071 3100 3.489398 GCGACACACAAACCCAAAATACA 60.489 43.478 0.00 0.00 0.00 2.29
1133 3162 4.551892 CCGCGTTCAACAATTACATTACAC 59.448 41.667 4.92 0.00 0.00 2.90
1244 3273 4.223923 ACAGAGACCAGAACCCATAAGAAG 59.776 45.833 0.00 0.00 0.00 2.85
1248 3277 3.009033 CCAACAGAGACCAGAACCCATAA 59.991 47.826 0.00 0.00 0.00 1.90
1251 3280 0.764890 CCAACAGAGACCAGAACCCA 59.235 55.000 0.00 0.00 0.00 4.51
1268 3297 4.248842 CCACCACCAGTCGCACCA 62.249 66.667 0.00 0.00 0.00 4.17
1269 3298 3.883744 CTCCACCACCAGTCGCACC 62.884 68.421 0.00 0.00 0.00 5.01
1276 3305 0.251354 CAGATCCACTCCACCACCAG 59.749 60.000 0.00 0.00 0.00 4.00
1299 3328 3.122297 CGCATGCTTCCTCTAAGAGAAG 58.878 50.000 17.13 0.00 37.38 2.85
1350 3379 4.253685 ACACATCGTCAATCCAAGTTAGG 58.746 43.478 0.00 0.00 0.00 2.69
1355 3384 4.392754 TCATGAACACATCGTCAATCCAAG 59.607 41.667 0.00 0.00 0.00 3.61
1365 3394 4.034394 ACCAATCGAATCATGAACACATCG 59.966 41.667 0.00 5.75 0.00 3.84
1391 3420 5.508200 ACGATCCAAAACTTAACAAGCAA 57.492 34.783 0.00 0.00 0.00 3.91
1511 3540 3.876914 TCGCTAGCAAATAGTTCCAATGG 59.123 43.478 16.45 0.00 33.65 3.16
1598 3630 5.383476 CAATAAGAGGGCCAAAGATCAGAT 58.617 41.667 6.18 0.00 0.00 2.90
1758 3847 2.458592 AAGCAAATCGACATAAGCGC 57.541 45.000 0.00 0.00 0.00 5.92
1759 3848 2.527487 GCAAAGCAAATCGACATAAGCG 59.473 45.455 0.00 0.00 0.00 4.68
1769 3858 2.438868 AACCGGAAGCAAAGCAAATC 57.561 45.000 9.46 0.00 0.00 2.17
1786 3875 4.331968 TGTTGATGTACCATGAGGGAAAC 58.668 43.478 0.00 0.00 41.15 2.78
1800 3889 4.142315 GCCAGCTTGTGATATTGTTGATGT 60.142 41.667 0.00 0.00 0.00 3.06
1805 3894 5.410355 AATTGCCAGCTTGTGATATTGTT 57.590 34.783 0.00 0.00 0.00 2.83
1841 3930 3.287222 ACAACAGCAGCAGGAACTTAAA 58.713 40.909 0.00 0.00 34.60 1.52
1842 3931 2.930950 ACAACAGCAGCAGGAACTTAA 58.069 42.857 0.00 0.00 34.60 1.85
1843 3932 2.638480 ACAACAGCAGCAGGAACTTA 57.362 45.000 0.00 0.00 34.60 2.24
1845 3934 2.175878 CTACAACAGCAGCAGGAACT 57.824 50.000 0.00 0.00 43.88 3.01
1856 3945 3.612860 GGAACGAGTACATGCTACAACAG 59.387 47.826 0.00 0.00 0.00 3.16
1857 3946 3.006003 TGGAACGAGTACATGCTACAACA 59.994 43.478 0.00 0.00 0.00 3.33
1858 3947 3.367025 GTGGAACGAGTACATGCTACAAC 59.633 47.826 0.00 0.00 0.00 3.32
1859 3948 3.006003 TGTGGAACGAGTACATGCTACAA 59.994 43.478 0.00 0.00 42.39 2.41
1860 3949 2.559231 TGTGGAACGAGTACATGCTACA 59.441 45.455 0.00 0.00 42.39 2.74
1861 3950 3.179830 CTGTGGAACGAGTACATGCTAC 58.820 50.000 0.00 0.00 42.39 3.58
1862 3951 2.416836 GCTGTGGAACGAGTACATGCTA 60.417 50.000 0.00 0.00 42.39 3.49
1863 3952 1.673033 GCTGTGGAACGAGTACATGCT 60.673 52.381 0.00 0.00 42.39 3.79
1864 3953 0.721718 GCTGTGGAACGAGTACATGC 59.278 55.000 0.00 0.00 42.39 4.06
1865 3954 1.726791 GTGCTGTGGAACGAGTACATG 59.273 52.381 0.00 0.00 42.39 3.21
1866 3955 1.618837 AGTGCTGTGGAACGAGTACAT 59.381 47.619 0.00 0.00 42.39 2.29
1867 3956 1.037493 AGTGCTGTGGAACGAGTACA 58.963 50.000 0.00 0.00 42.39 2.90
1904 3993 1.271926 GGTGCAGCTTCTTCCCCTAAA 60.272 52.381 9.07 0.00 0.00 1.85
1914 4003 0.881796 GTAACCAAGGGTGCAGCTTC 59.118 55.000 16.65 0.00 35.34 3.86
2099 4190 8.821894 GCTCAGGAATTTGTGTTACTCTTATAG 58.178 37.037 0.00 0.00 0.00 1.31
2143 4234 8.253867 TCCAACGAGGGTATGTAGTTATAAAT 57.746 34.615 0.00 0.00 38.24 1.40
2166 4257 6.151648 TGAAATGGACACAGATGAAAATCTCC 59.848 38.462 0.00 0.00 0.00 3.71
2179 4293 7.495901 TGCTAAAAGAAATTGAAATGGACACA 58.504 30.769 0.00 0.00 0.00 3.72
2271 4385 8.916654 CATAGTTTTCATAGGTAGCATAAGTCG 58.083 37.037 0.00 0.00 0.00 4.18
2434 4551 2.230992 GCATTTGTCCCAGCACACATTA 59.769 45.455 0.00 0.00 0.00 1.90
2538 4655 2.550978 ACCTCTTCGCAATTATCACGG 58.449 47.619 0.00 0.00 0.00 4.94
2622 4742 1.888512 TGGCATGTTCAAAGGAAGCTC 59.111 47.619 0.00 0.00 32.62 4.09
2773 4902 9.505995 GATTGACTTAAAACGAAACCAACTAAA 57.494 29.630 0.00 0.00 0.00 1.85
2790 4919 7.337938 TGCCAGACTTCATATTGATTGACTTA 58.662 34.615 0.00 0.00 0.00 2.24
2800 4929 5.316167 TGACTTGTTGCCAGACTTCATATT 58.684 37.500 0.00 0.00 0.00 1.28
2872 5279 5.084818 TGGTAATCACATTCGACAGATGT 57.915 39.130 0.00 0.00 0.00 3.06
2885 5292 2.495669 CCCACCCAACAATGGTAATCAC 59.504 50.000 0.00 0.00 46.01 3.06
2902 5309 5.183904 AGTGCAGAAATTATGAAGTTCCCAC 59.816 40.000 0.00 10.34 37.93 4.61
2942 5349 7.255590 CCAACCATGGTTATCATCTTATCAACC 60.256 40.741 29.36 0.00 42.18 3.77
2943 5350 7.651808 CCAACCATGGTTATCATCTTATCAAC 58.348 38.462 29.36 0.00 42.18 3.18
2944 5351 7.822161 CCAACCATGGTTATCATCTTATCAA 57.178 36.000 29.36 0.00 42.18 2.57
2960 5367 0.890683 GAAGTTCCCAGCCAACCATG 59.109 55.000 0.00 0.00 0.00 3.66
2961 5368 0.482446 TGAAGTTCCCAGCCAACCAT 59.518 50.000 0.00 0.00 0.00 3.55
2962 5369 0.482446 ATGAAGTTCCCAGCCAACCA 59.518 50.000 0.00 0.00 0.00 3.67
2963 5370 2.507407 TATGAAGTTCCCAGCCAACC 57.493 50.000 0.00 0.00 0.00 3.77
2964 5371 5.185828 AGAAATTATGAAGTTCCCAGCCAAC 59.814 40.000 0.00 0.00 36.20 3.77
2965 5372 5.185635 CAGAAATTATGAAGTTCCCAGCCAA 59.814 40.000 0.00 0.00 36.20 4.52
2966 5373 4.706476 CAGAAATTATGAAGTTCCCAGCCA 59.294 41.667 0.00 0.00 36.20 4.75
2967 5374 4.440663 GCAGAAATTATGAAGTTCCCAGCC 60.441 45.833 0.00 0.00 36.20 4.85
2968 5375 4.158394 TGCAGAAATTATGAAGTTCCCAGC 59.842 41.667 0.00 0.61 36.20 4.85
2969 5376 5.416952 AGTGCAGAAATTATGAAGTTCCCAG 59.583 40.000 0.00 0.00 36.20 4.45
2970 5377 5.324409 AGTGCAGAAATTATGAAGTTCCCA 58.676 37.500 0.00 0.00 36.20 4.37
2971 5378 5.904362 AGTGCAGAAATTATGAAGTTCCC 57.096 39.130 0.00 0.00 36.20 3.97
2972 5379 7.377766 TGTAGTGCAGAAATTATGAAGTTCC 57.622 36.000 0.00 0.00 36.20 3.62
2980 5387 9.494271 CCACTGTATATGTAGTGCAGAAATTAT 57.506 33.333 13.01 0.00 42.21 1.28
2981 5388 8.482943 ACCACTGTATATGTAGTGCAGAAATTA 58.517 33.333 13.01 0.00 42.21 1.40
2982 5389 7.338710 ACCACTGTATATGTAGTGCAGAAATT 58.661 34.615 13.01 0.00 42.21 1.82
2983 5390 6.889198 ACCACTGTATATGTAGTGCAGAAAT 58.111 36.000 13.01 0.00 42.21 2.17
2984 5391 6.294361 ACCACTGTATATGTAGTGCAGAAA 57.706 37.500 13.01 0.00 42.21 2.52
2985 5392 5.932619 ACCACTGTATATGTAGTGCAGAA 57.067 39.130 13.01 0.00 42.21 3.02
2986 5393 5.420739 TCAACCACTGTATATGTAGTGCAGA 59.579 40.000 13.01 8.76 42.21 4.26
2987 5394 5.660460 TCAACCACTGTATATGTAGTGCAG 58.340 41.667 13.01 6.05 42.21 4.41
2988 5395 5.669164 TCAACCACTGTATATGTAGTGCA 57.331 39.130 13.01 0.00 42.21 4.57
2989 5396 7.926555 ACTTATCAACCACTGTATATGTAGTGC 59.073 37.037 13.01 0.00 42.21 4.40
2990 5397 9.817809 AACTTATCAACCACTGTATATGTAGTG 57.182 33.333 11.98 11.98 42.97 2.74
2997 5404 9.470399 TGAGACTAACTTATCAACCACTGTATA 57.530 33.333 0.00 0.00 0.00 1.47
2998 5405 8.362464 TGAGACTAACTTATCAACCACTGTAT 57.638 34.615 0.00 0.00 0.00 2.29
2999 5406 7.770366 TGAGACTAACTTATCAACCACTGTA 57.230 36.000 0.00 0.00 0.00 2.74
3000 5407 6.665992 TGAGACTAACTTATCAACCACTGT 57.334 37.500 0.00 0.00 0.00 3.55
3015 5422 3.711190 TGGCAGGCTTATGATGAGACTAA 59.289 43.478 0.00 0.00 29.33 2.24
3033 5440 4.185467 ACGCAATCATTTTTATGTGGCA 57.815 36.364 0.00 0.00 0.00 4.92
3055 5482 7.246763 TCCCCATTTTATTTAACCCTGTACAA 58.753 34.615 0.00 0.00 0.00 2.41
3091 5519 4.557301 GTGCAAAAGATATGTTTACGGCAC 59.443 41.667 22.20 22.20 36.15 5.01
3109 5575 0.819259 GCAGGTCTCTTGTGGTGCAA 60.819 55.000 0.00 0.00 35.50 4.08
3110 5576 1.227943 GCAGGTCTCTTGTGGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
3146 5612 8.946085 CCTTATGTTATAGCTTTTCTCAACACA 58.054 33.333 0.00 0.00 34.61 3.72
3147 5613 8.947115 ACCTTATGTTATAGCTTTTCTCAACAC 58.053 33.333 0.00 0.00 34.61 3.32
3148 5614 9.515226 AACCTTATGTTATAGCTTTTCTCAACA 57.485 29.630 0.00 0.00 34.69 3.33
3149 5615 9.774742 CAACCTTATGTTATAGCTTTTCTCAAC 57.225 33.333 0.00 0.00 34.69 3.18
3150 5616 9.733556 TCAACCTTATGTTATAGCTTTTCTCAA 57.266 29.630 0.00 0.00 34.69 3.02
3151 5617 9.905713 ATCAACCTTATGTTATAGCTTTTCTCA 57.094 29.630 0.00 0.00 34.69 3.27
3192 5685 2.479566 TCTTCCATTCACAGCTCCAC 57.520 50.000 0.00 0.00 0.00 4.02
3193 5686 3.507162 TTTCTTCCATTCACAGCTCCA 57.493 42.857 0.00 0.00 0.00 3.86
3194 5687 3.057245 GGTTTTCTTCCATTCACAGCTCC 60.057 47.826 0.00 0.00 0.00 4.70
3195 5688 3.365364 CGGTTTTCTTCCATTCACAGCTC 60.365 47.826 0.00 0.00 0.00 4.09
3196 5689 2.554032 CGGTTTTCTTCCATTCACAGCT 59.446 45.455 0.00 0.00 0.00 4.24
3197 5690 2.552315 TCGGTTTTCTTCCATTCACAGC 59.448 45.455 0.00 0.00 0.00 4.40
3198 5691 4.036262 TGTTCGGTTTTCTTCCATTCACAG 59.964 41.667 0.00 0.00 0.00 3.66
3199 5692 3.948473 TGTTCGGTTTTCTTCCATTCACA 59.052 39.130 0.00 0.00 0.00 3.58
3200 5693 4.561735 TGTTCGGTTTTCTTCCATTCAC 57.438 40.909 0.00 0.00 0.00 3.18
3201 5694 5.584253 TTTGTTCGGTTTTCTTCCATTCA 57.416 34.783 0.00 0.00 0.00 2.57
3202 5695 4.444388 GCTTTGTTCGGTTTTCTTCCATTC 59.556 41.667 0.00 0.00 0.00 2.67
3203 5696 4.368315 GCTTTGTTCGGTTTTCTTCCATT 58.632 39.130 0.00 0.00 0.00 3.16
3204 5697 3.243737 GGCTTTGTTCGGTTTTCTTCCAT 60.244 43.478 0.00 0.00 0.00 3.41
3278 5773 0.036306 GTGGTTGACAGGGTTCGGAT 59.964 55.000 0.00 0.00 0.00 4.18
3279 5774 1.448497 GTGGTTGACAGGGTTCGGA 59.552 57.895 0.00 0.00 0.00 4.55
3280 5775 1.959226 CGTGGTTGACAGGGTTCGG 60.959 63.158 0.00 0.00 0.00 4.30
3281 5776 0.531090 TTCGTGGTTGACAGGGTTCG 60.531 55.000 0.00 0.00 35.71 3.95
3282 5777 1.226746 CTTCGTGGTTGACAGGGTTC 58.773 55.000 0.00 0.00 35.71 3.62
3284 5779 1.227853 GCTTCGTGGTTGACAGGGT 60.228 57.895 0.00 0.00 35.71 4.34
3285 5780 0.817634 TTGCTTCGTGGTTGACAGGG 60.818 55.000 0.00 0.00 35.71 4.45
3286 5781 0.588252 CTTGCTTCGTGGTTGACAGG 59.412 55.000 0.00 0.00 36.32 4.00
3295 5792 2.033299 ACACAATGGTTCTTGCTTCGTG 59.967 45.455 0.00 0.00 0.00 4.35
3395 5892 4.539083 TTGTGTGCAGTCGCCCGT 62.539 61.111 0.00 0.00 37.32 5.28
3396 5893 3.276091 TTTGTGTGCAGTCGCCCG 61.276 61.111 0.00 0.00 37.32 6.13
3397 5894 2.331451 GTTTGTGTGCAGTCGCCC 59.669 61.111 0.00 0.00 37.32 6.13
3398 5895 2.331451 GGTTTGTGTGCAGTCGCC 59.669 61.111 0.00 0.00 37.32 5.54
3399 5896 2.331451 GGGTTTGTGTGCAGTCGC 59.669 61.111 0.00 0.00 39.24 5.19
3400 5897 1.821759 TGGGGTTTGTGTGCAGTCG 60.822 57.895 0.00 0.00 0.00 4.18
3401 5898 1.733526 GTGGGGTTTGTGTGCAGTC 59.266 57.895 0.00 0.00 0.00 3.51
3402 5899 1.756561 GGTGGGGTTTGTGTGCAGT 60.757 57.895 0.00 0.00 0.00 4.40
3403 5900 1.737355 CTGGTGGGGTTTGTGTGCAG 61.737 60.000 0.00 0.00 0.00 4.41
3404 5901 1.756172 CTGGTGGGGTTTGTGTGCA 60.756 57.895 0.00 0.00 0.00 4.57
3494 5998 1.693062 CTCCATGAGAGGGAGGTGATG 59.307 57.143 0.00 0.00 46.65 3.07
3552 6057 0.837272 ACGTGGATCAAATCGGGGAT 59.163 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.