Multiple sequence alignment - TraesCS7D01G263500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263500 chr7D 100.000 2912 0 0 1 2912 244145034 244147945 0.000000e+00 5378.0
1 TraesCS7D01G263500 chr7D 82.866 321 34 12 2435 2737 504515734 504515417 4.780000e-68 268.0
2 TraesCS7D01G263500 chr7D 92.157 51 4 0 772 822 327397547 327397597 4.030000e-09 73.1
3 TraesCS7D01G263500 chr7D 90.196 51 5 0 772 822 507239859 507239909 1.870000e-07 67.6
4 TraesCS7D01G263500 chr7D 100.000 30 0 0 79 108 259217264 259217235 4.050000e-04 56.5
5 TraesCS7D01G263500 chr7D 100.000 30 0 0 79 108 404966089 404966060 4.050000e-04 56.5
6 TraesCS7D01G263500 chr7A 91.758 1650 60 20 826 2431 259557043 259558660 0.000000e+00 2224.0
7 TraesCS7D01G263500 chr7A 92.655 177 12 1 2736 2912 259558657 259558832 1.340000e-63 254.0
8 TraesCS7D01G263500 chr7B 88.333 1260 64 33 995 2241 219461885 219463074 0.000000e+00 1435.0
9 TraesCS7D01G263500 chr7B 94.040 151 9 0 2285 2435 219463075 219463225 2.260000e-56 230.0
10 TraesCS7D01G263500 chr7B 92.517 147 11 0 2731 2877 219464416 219464562 8.180000e-51 211.0
11 TraesCS7D01G263500 chr1D 90.878 581 38 7 112 689 3632333 3632901 0.000000e+00 765.0
12 TraesCS7D01G263500 chr1D 90.799 576 38 9 112 684 5083480 5082917 0.000000e+00 756.0
13 TraesCS7D01G263500 chr1D 74.303 323 65 12 132 446 4667448 4667136 1.420000e-23 121.0
14 TraesCS7D01G263500 chr1D 90.196 51 5 0 772 822 19904471 19904521 1.870000e-07 67.6
15 TraesCS7D01G263500 chr1B 88.346 266 25 3 429 693 7083509 7083249 6.060000e-82 315.0
16 TraesCS7D01G263500 chr1B 85.121 289 40 2 112 398 7083792 7083505 2.840000e-75 292.0
17 TraesCS7D01G263500 chr1B 79.581 191 34 4 210 398 629637193 629637380 6.550000e-27 132.0
18 TraesCS7D01G263500 chr2B 83.636 330 35 8 2427 2739 98312405 98312732 2.840000e-75 292.0
19 TraesCS7D01G263500 chr5B 82.927 328 38 9 2430 2740 31873792 31874118 2.210000e-71 279.0
20 TraesCS7D01G263500 chr5B 85.185 54 7 1 768 820 655014347 655014294 1.000000e-03 54.7
21 TraesCS7D01G263500 chr3D 82.569 327 38 8 2427 2736 210410145 210410469 1.330000e-68 270.0
22 TraesCS7D01G263500 chr3D 90.196 51 5 0 772 822 304026312 304026262 1.870000e-07 67.6
23 TraesCS7D01G263500 chr4A 82.609 322 36 11 2433 2736 323696687 323696368 1.720000e-67 267.0
24 TraesCS7D01G263500 chr3B 82.121 330 39 9 2425 2736 397413615 397413942 6.190000e-67 265.0
25 TraesCS7D01G263500 chr3B 81.627 332 42 6 2425 2739 177076574 177076245 1.040000e-64 257.0
26 TraesCS7D01G263500 chr3B 82.428 313 37 5 2436 2731 412699469 412699780 1.040000e-64 257.0
27 TraesCS7D01G263500 chr2A 82.263 327 39 5 2427 2736 15461105 15461429 6.190000e-67 265.0
28 TraesCS7D01G263500 chr2A 82.090 335 35 12 2423 2739 738408074 738407747 2.230000e-66 263.0
29 TraesCS7D01G263500 chr2A 86.391 169 22 1 2426 2594 700977827 700977660 1.780000e-42 183.0
30 TraesCS7D01G263500 chr4B 82.500 320 37 6 2433 2735 363317872 363317555 2.230000e-66 263.0
31 TraesCS7D01G263500 chr5A 82.143 336 31 11 2433 2743 643858817 643858486 8.000000e-66 261.0
32 TraesCS7D01G263500 chr5D 81.873 331 39 10 2427 2740 264879563 264879889 2.880000e-65 259.0
33 TraesCS7D01G263500 chr2D 91.034 145 13 0 2597 2741 17796226 17796082 2.290000e-46 196.0
34 TraesCS7D01G263500 chr4D 90.780 141 13 0 2598 2738 379253253 379253113 3.830000e-44 189.0
35 TraesCS7D01G263500 chr4D 90.714 140 13 0 2597 2736 489204457 489204318 1.380000e-43 187.0
36 TraesCS7D01G263500 chr4D 90.196 51 5 0 772 822 473868508 473868558 1.870000e-07 67.6
37 TraesCS7D01G263500 chr3A 89.510 143 15 0 2597 2739 42217033 42216891 6.410000e-42 182.0
38 TraesCS7D01G263500 chr3A 91.379 58 5 0 772 829 746410448 746410505 2.410000e-11 80.5
39 TraesCS7D01G263500 chr6D 92.157 51 4 0 772 822 435533857 435533907 4.030000e-09 73.1
40 TraesCS7D01G263500 chr1A 92.157 51 4 0 772 822 535341966 535342016 4.030000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263500 chr7D 244145034 244147945 2911 False 5378.000000 5378 100.0000 1 2912 1 chr7D.!!$F1 2911
1 TraesCS7D01G263500 chr7A 259557043 259558832 1789 False 1239.000000 2224 92.2065 826 2912 2 chr7A.!!$F1 2086
2 TraesCS7D01G263500 chr7B 219461885 219464562 2677 False 625.333333 1435 91.6300 995 2877 3 chr7B.!!$F1 1882
3 TraesCS7D01G263500 chr1D 3632333 3632901 568 False 765.000000 765 90.8780 112 689 1 chr1D.!!$F1 577
4 TraesCS7D01G263500 chr1D 5082917 5083480 563 True 756.000000 756 90.7990 112 684 1 chr1D.!!$R2 572
5 TraesCS7D01G263500 chr1B 7083249 7083792 543 True 303.500000 315 86.7335 112 693 2 chr1B.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 519 0.253327 TAAGGGCACACACACACACA 59.747 50.0 0.0 0.0 0.00 3.72 F
762 766 0.669077 CCGAAGAGGGGAGTATCGTG 59.331 60.0 0.0 0.0 34.37 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 1544 0.242825 TTGACCTGGACATCGACGTC 59.757 55.0 2.32 2.32 35.03 4.34 R
2696 3953 0.033503 TCTCAGGGTGATGCCTCGTA 60.034 55.0 0.00 0.00 37.43 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.707030 CTGTGCAGCTAATTTTCCATGA 57.293 40.909 0.00 0.00 0.00 3.07
24 25 5.063180 CTGTGCAGCTAATTTTCCATGAA 57.937 39.130 0.00 0.00 0.00 2.57
25 26 4.808558 TGTGCAGCTAATTTTCCATGAAC 58.191 39.130 0.00 0.00 0.00 3.18
26 27 3.853671 GTGCAGCTAATTTTCCATGAACG 59.146 43.478 0.00 0.00 0.00 3.95
27 28 3.505680 TGCAGCTAATTTTCCATGAACGT 59.494 39.130 0.00 0.00 0.00 3.99
28 29 4.022416 TGCAGCTAATTTTCCATGAACGTT 60.022 37.500 0.00 0.00 0.00 3.99
29 30 4.923281 GCAGCTAATTTTCCATGAACGTTT 59.077 37.500 0.46 0.00 0.00 3.60
30 31 5.164061 GCAGCTAATTTTCCATGAACGTTTG 60.164 40.000 0.46 0.00 0.00 2.93
31 32 5.345741 CAGCTAATTTTCCATGAACGTTTGG 59.654 40.000 12.04 12.04 0.00 3.28
32 33 4.625311 GCTAATTTTCCATGAACGTTTGGG 59.375 41.667 16.97 12.09 33.62 4.12
33 34 3.676291 ATTTTCCATGAACGTTTGGGG 57.324 42.857 16.97 11.78 33.62 4.96
34 35 2.074729 TTTCCATGAACGTTTGGGGT 57.925 45.000 16.97 0.00 33.62 4.95
35 36 2.074729 TTCCATGAACGTTTGGGGTT 57.925 45.000 16.97 0.00 33.62 4.11
36 37 2.074729 TCCATGAACGTTTGGGGTTT 57.925 45.000 16.97 0.00 33.62 3.27
37 38 3.225177 TCCATGAACGTTTGGGGTTTA 57.775 42.857 16.97 0.00 33.62 2.01
38 39 3.150767 TCCATGAACGTTTGGGGTTTAG 58.849 45.455 16.97 0.00 33.62 1.85
39 40 2.230266 CCATGAACGTTTGGGGTTTAGG 59.770 50.000 10.64 0.00 0.00 2.69
40 41 1.984066 TGAACGTTTGGGGTTTAGGG 58.016 50.000 0.46 0.00 0.00 3.53
41 42 1.214923 TGAACGTTTGGGGTTTAGGGT 59.785 47.619 0.46 0.00 0.00 4.34
42 43 2.309613 GAACGTTTGGGGTTTAGGGTT 58.690 47.619 0.46 0.00 0.00 4.11
43 44 2.457813 ACGTTTGGGGTTTAGGGTTT 57.542 45.000 0.00 0.00 0.00 3.27
44 45 3.591695 ACGTTTGGGGTTTAGGGTTTA 57.408 42.857 0.00 0.00 0.00 2.01
45 46 3.489355 ACGTTTGGGGTTTAGGGTTTAG 58.511 45.455 0.00 0.00 0.00 1.85
46 47 2.821378 CGTTTGGGGTTTAGGGTTTAGG 59.179 50.000 0.00 0.00 0.00 2.69
47 48 3.167485 GTTTGGGGTTTAGGGTTTAGGG 58.833 50.000 0.00 0.00 0.00 3.53
48 49 2.152680 TGGGGTTTAGGGTTTAGGGT 57.847 50.000 0.00 0.00 0.00 4.34
49 50 2.441354 TGGGGTTTAGGGTTTAGGGTT 58.559 47.619 0.00 0.00 0.00 4.11
50 51 2.379567 TGGGGTTTAGGGTTTAGGGTTC 59.620 50.000 0.00 0.00 0.00 3.62
51 52 2.651334 GGGGTTTAGGGTTTAGGGTTCT 59.349 50.000 0.00 0.00 0.00 3.01
52 53 3.562826 GGGGTTTAGGGTTTAGGGTTCTG 60.563 52.174 0.00 0.00 0.00 3.02
53 54 3.074985 GGGTTTAGGGTTTAGGGTTCTGT 59.925 47.826 0.00 0.00 0.00 3.41
54 55 4.289410 GGGTTTAGGGTTTAGGGTTCTGTA 59.711 45.833 0.00 0.00 0.00 2.74
55 56 5.248640 GGTTTAGGGTTTAGGGTTCTGTAC 58.751 45.833 0.00 0.00 0.00 2.90
56 57 5.221904 GGTTTAGGGTTTAGGGTTCTGTACA 60.222 44.000 0.00 0.00 0.00 2.90
57 58 6.479006 GTTTAGGGTTTAGGGTTCTGTACAT 58.521 40.000 0.00 0.00 0.00 2.29
58 59 7.311234 GGTTTAGGGTTTAGGGTTCTGTACATA 60.311 40.741 0.00 0.00 0.00 2.29
59 60 5.688814 AGGGTTTAGGGTTCTGTACATAC 57.311 43.478 0.00 0.00 0.00 2.39
60 61 5.095809 AGGGTTTAGGGTTCTGTACATACA 58.904 41.667 0.00 0.00 34.56 2.29
61 62 5.729718 AGGGTTTAGGGTTCTGTACATACAT 59.270 40.000 0.00 0.00 35.36 2.29
62 63 5.820947 GGGTTTAGGGTTCTGTACATACATG 59.179 44.000 0.00 0.00 35.36 3.21
63 64 6.352394 GGGTTTAGGGTTCTGTACATACATGA 60.352 42.308 0.00 0.00 35.36 3.07
64 65 7.107542 GGTTTAGGGTTCTGTACATACATGAA 58.892 38.462 0.00 0.00 35.36 2.57
65 66 7.065443 GGTTTAGGGTTCTGTACATACATGAAC 59.935 40.741 13.71 13.71 40.06 3.18
66 67 4.755411 AGGGTTCTGTACATACATGAACG 58.245 43.478 14.96 0.00 40.76 3.95
67 68 4.222145 AGGGTTCTGTACATACATGAACGT 59.778 41.667 14.96 6.00 40.76 3.99
68 69 4.933400 GGGTTCTGTACATACATGAACGTT 59.067 41.667 14.96 0.00 40.76 3.99
69 70 5.063060 GGGTTCTGTACATACATGAACGTTC 59.937 44.000 21.42 21.42 40.76 3.95
70 71 5.636121 GGTTCTGTACATACATGAACGTTCA 59.364 40.000 31.41 31.41 40.76 3.18
72 73 7.490079 GGTTCTGTACATACATGAACGTTCATA 59.510 37.037 36.18 25.38 45.62 2.15
73 74 9.031360 GTTCTGTACATACATGAACGTTCATAT 57.969 33.333 36.18 30.32 45.62 1.78
74 75 8.574196 TCTGTACATACATGAACGTTCATATG 57.426 34.615 36.18 34.28 45.62 1.78
75 76 8.410141 TCTGTACATACATGAACGTTCATATGA 58.590 33.333 37.24 27.90 45.62 2.15
76 77 8.574196 TGTACATACATGAACGTTCATATGAG 57.426 34.615 37.24 29.22 45.62 2.90
77 78 8.194769 TGTACATACATGAACGTTCATATGAGT 58.805 33.333 37.24 31.82 45.62 3.41
78 79 7.468922 ACATACATGAACGTTCATATGAGTG 57.531 36.000 37.24 30.56 45.62 3.51
79 80 4.864916 ACATGAACGTTCATATGAGTGC 57.135 40.909 36.18 6.42 45.62 4.40
80 81 4.252878 ACATGAACGTTCATATGAGTGCA 58.747 39.130 36.18 11.93 45.62 4.57
81 82 4.330894 ACATGAACGTTCATATGAGTGCAG 59.669 41.667 36.18 24.41 45.62 4.41
82 83 4.186856 TGAACGTTCATATGAGTGCAGA 57.813 40.909 26.53 0.00 31.01 4.26
83 84 3.926527 TGAACGTTCATATGAGTGCAGAC 59.073 43.478 26.53 0.00 31.01 3.51
84 85 2.530177 ACGTTCATATGAGTGCAGACG 58.470 47.619 18.89 18.89 0.00 4.18
85 86 1.854743 CGTTCATATGAGTGCAGACGG 59.145 52.381 14.65 0.97 0.00 4.79
86 87 1.594862 GTTCATATGAGTGCAGACGGC 59.405 52.381 5.39 0.00 45.13 5.68
96 97 3.461843 GCAGACGGCAAAGTTTCTG 57.538 52.632 0.00 0.00 43.97 3.02
97 98 0.944386 GCAGACGGCAAAGTTTCTGA 59.056 50.000 5.82 0.00 43.97 3.27
98 99 1.537202 GCAGACGGCAAAGTTTCTGAT 59.463 47.619 5.82 0.00 43.97 2.90
99 100 2.030805 GCAGACGGCAAAGTTTCTGATT 60.031 45.455 5.82 0.00 43.97 2.57
100 101 3.814945 CAGACGGCAAAGTTTCTGATTC 58.185 45.455 0.00 0.00 38.19 2.52
101 102 2.814336 AGACGGCAAAGTTTCTGATTCC 59.186 45.455 0.00 0.00 0.00 3.01
102 103 2.814336 GACGGCAAAGTTTCTGATTCCT 59.186 45.455 0.00 0.00 0.00 3.36
103 104 2.554032 ACGGCAAAGTTTCTGATTCCTG 59.446 45.455 0.00 0.00 0.00 3.86
104 105 2.554032 CGGCAAAGTTTCTGATTCCTGT 59.446 45.455 0.00 0.00 0.00 4.00
105 106 3.751175 CGGCAAAGTTTCTGATTCCTGTA 59.249 43.478 0.00 0.00 0.00 2.74
106 107 4.142816 CGGCAAAGTTTCTGATTCCTGTAG 60.143 45.833 0.00 0.00 0.00 2.74
107 108 4.762251 GGCAAAGTTTCTGATTCCTGTAGT 59.238 41.667 0.00 0.00 0.00 2.73
108 109 5.938125 GGCAAAGTTTCTGATTCCTGTAGTA 59.062 40.000 0.00 0.00 0.00 1.82
109 110 6.430000 GGCAAAGTTTCTGATTCCTGTAGTAA 59.570 38.462 0.00 0.00 0.00 2.24
110 111 7.298854 GCAAAGTTTCTGATTCCTGTAGTAAC 58.701 38.462 0.00 0.00 0.00 2.50
118 119 5.957798 TGATTCCTGTAGTAACGGTAACAG 58.042 41.667 5.49 5.49 39.22 3.16
165 166 7.722363 TGGCTCGTGATATTGAAAATAGAGTA 58.278 34.615 0.00 0.00 0.00 2.59
207 208 8.898761 ACTACTGTTCTCTTAGATACTCACATG 58.101 37.037 0.00 0.00 0.00 3.21
227 228 8.641541 TCACATGGAAAAGCTTTTCTTAATTCT 58.358 29.630 37.59 19.65 44.49 2.40
279 280 5.766150 CAATCTCGAGAGTGGATAGTTCT 57.234 43.478 30.17 3.00 36.59 3.01
283 284 8.356657 CAATCTCGAGAGTGGATAGTTCTAAAT 58.643 37.037 30.17 1.29 36.59 1.40
324 325 6.604396 TCCCGATGTCTACTTACAGTTTCATA 59.396 38.462 0.00 0.00 31.70 2.15
363 364 2.542766 AGGTTGCACGATATTTTGCG 57.457 45.000 0.00 0.00 41.96 4.85
405 408 0.831288 TTGGGTGACAAAGCATGGGG 60.831 55.000 0.00 0.00 35.79 4.96
424 427 3.567164 GGGGCATGATACTCTCAATGTTG 59.433 47.826 0.00 0.00 37.44 3.33
512 515 2.719531 TTTCTAAGGGCACACACACA 57.280 45.000 0.00 0.00 0.00 3.72
513 516 1.961793 TTCTAAGGGCACACACACAC 58.038 50.000 0.00 0.00 0.00 3.82
514 517 0.833949 TCTAAGGGCACACACACACA 59.166 50.000 0.00 0.00 0.00 3.72
515 518 0.944386 CTAAGGGCACACACACACAC 59.056 55.000 0.00 0.00 0.00 3.82
516 519 0.253327 TAAGGGCACACACACACACA 59.747 50.000 0.00 0.00 0.00 3.72
554 557 9.646427 GTATTCAAGTGAGTCTCAAAATAGAGT 57.354 33.333 3.51 0.00 36.97 3.24
558 561 9.249053 TCAAGTGAGTCTCAAAATAGAGTAGAT 57.751 33.333 3.51 0.00 36.97 1.98
642 646 4.808558 TCATGGAAAATTAGCTGCACAAC 58.191 39.130 1.02 0.00 0.00 3.32
653 657 1.812235 CTGCACAACAGGCACTCATA 58.188 50.000 0.00 0.00 43.19 2.15
668 672 6.015180 AGGCACTCATATGAACATTTGTGTTT 60.015 34.615 17.08 7.35 28.87 2.83
700 704 7.930217 GCAATAGGCATTTTCTCTAACATACA 58.070 34.615 0.00 0.00 43.97 2.29
701 705 7.857885 GCAATAGGCATTTTCTCTAACATACAC 59.142 37.037 0.00 0.00 43.97 2.90
702 706 7.715265 ATAGGCATTTTCTCTAACATACACG 57.285 36.000 0.00 0.00 0.00 4.49
703 707 5.730550 AGGCATTTTCTCTAACATACACGA 58.269 37.500 0.00 0.00 0.00 4.35
704 708 6.170506 AGGCATTTTCTCTAACATACACGAA 58.829 36.000 0.00 0.00 0.00 3.85
705 709 6.092259 AGGCATTTTCTCTAACATACACGAAC 59.908 38.462 0.00 0.00 0.00 3.95
706 710 5.952064 GCATTTTCTCTAACATACACGAACG 59.048 40.000 0.00 0.00 0.00 3.95
707 711 6.400727 GCATTTTCTCTAACATACACGAACGT 60.401 38.462 0.00 0.00 0.00 3.99
708 712 7.507304 CATTTTCTCTAACATACACGAACGTT 58.493 34.615 0.00 0.00 0.00 3.99
709 713 7.467557 TTTTCTCTAACATACACGAACGTTT 57.532 32.000 0.46 0.00 0.00 3.60
710 714 7.467557 TTTCTCTAACATACACGAACGTTTT 57.532 32.000 0.46 0.00 0.00 2.43
711 715 6.442487 TCTCTAACATACACGAACGTTTTG 57.558 37.500 0.46 5.75 0.00 2.44
712 716 5.978919 TCTCTAACATACACGAACGTTTTGT 59.021 36.000 17.50 17.50 0.00 2.83
713 717 7.138081 TCTCTAACATACACGAACGTTTTGTA 58.862 34.615 19.92 19.92 0.00 2.41
714 718 7.809331 TCTCTAACATACACGAACGTTTTGTAT 59.191 33.333 21.82 21.82 36.99 2.29
715 719 8.962857 TCTAACATACACGAACGTTTTGTATA 57.037 30.769 24.72 13.10 35.20 1.47
716 720 9.571810 TCTAACATACACGAACGTTTTGTATAT 57.428 29.630 24.72 20.40 35.20 0.86
719 723 8.686397 ACATACACGAACGTTTTGTATATACA 57.314 30.769 24.72 11.62 35.20 2.29
720 724 8.586273 ACATACACGAACGTTTTGTATATACAC 58.414 33.333 24.72 3.70 35.20 2.90
721 725 6.069665 ACACGAACGTTTTGTATATACACG 57.930 37.500 15.20 16.78 35.64 4.49
722 726 4.945597 CACGAACGTTTTGTATATACACGC 59.054 41.667 15.20 7.57 35.64 5.34
723 727 4.620609 ACGAACGTTTTGTATATACACGCA 59.379 37.500 15.20 0.00 35.64 5.24
724 728 5.178260 CGAACGTTTTGTATATACACGCAG 58.822 41.667 15.20 9.85 35.64 5.18
725 729 4.509915 ACGTTTTGTATATACACGCAGC 57.490 40.909 15.20 4.29 35.64 5.25
726 730 3.927758 ACGTTTTGTATATACACGCAGCA 59.072 39.130 15.20 0.00 35.64 4.41
727 731 4.201647 ACGTTTTGTATATACACGCAGCAC 60.202 41.667 15.20 5.43 35.64 4.40
742 746 2.743928 CACGCAGCCAGGTTCCTC 60.744 66.667 0.00 0.00 0.00 3.71
743 747 4.021925 ACGCAGCCAGGTTCCTCC 62.022 66.667 0.00 0.00 0.00 4.30
744 748 4.785453 CGCAGCCAGGTTCCTCCC 62.785 72.222 0.00 0.00 36.75 4.30
745 749 4.785453 GCAGCCAGGTTCCTCCCG 62.785 72.222 0.00 0.00 36.75 5.14
746 750 3.003173 CAGCCAGGTTCCTCCCGA 61.003 66.667 0.00 0.00 36.75 5.14
747 751 2.203938 AGCCAGGTTCCTCCCGAA 60.204 61.111 0.00 0.00 36.75 4.30
748 752 2.269241 GCCAGGTTCCTCCCGAAG 59.731 66.667 0.00 0.00 36.75 3.79
749 753 2.291043 GCCAGGTTCCTCCCGAAGA 61.291 63.158 0.00 0.00 36.75 2.87
750 754 1.901085 CCAGGTTCCTCCCGAAGAG 59.099 63.158 0.00 0.00 42.83 2.85
761 765 3.112965 CCGAAGAGGGGAGTATCGT 57.887 57.895 0.00 0.00 34.37 3.73
762 766 0.669077 CCGAAGAGGGGAGTATCGTG 59.331 60.000 0.00 0.00 34.37 4.35
763 767 1.390565 CGAAGAGGGGAGTATCGTGT 58.609 55.000 0.00 0.00 34.37 4.49
764 768 1.065701 CGAAGAGGGGAGTATCGTGTG 59.934 57.143 0.00 0.00 34.37 3.82
765 769 1.409427 GAAGAGGGGAGTATCGTGTGG 59.591 57.143 0.00 0.00 34.37 4.17
766 770 1.043673 AGAGGGGAGTATCGTGTGGC 61.044 60.000 0.00 0.00 34.37 5.01
767 771 1.001760 AGGGGAGTATCGTGTGGCT 59.998 57.895 0.00 0.00 34.37 4.75
768 772 1.144057 GGGGAGTATCGTGTGGCTG 59.856 63.158 0.00 0.00 34.37 4.85
769 773 1.521681 GGGAGTATCGTGTGGCTGC 60.522 63.158 0.00 0.00 34.37 5.25
770 774 1.878522 GGAGTATCGTGTGGCTGCG 60.879 63.158 0.00 0.00 34.37 5.18
771 775 1.153823 GAGTATCGTGTGGCTGCGT 60.154 57.895 0.00 0.00 0.00 5.24
772 776 1.413767 GAGTATCGTGTGGCTGCGTG 61.414 60.000 0.00 0.00 0.00 5.34
773 777 2.813474 TATCGTGTGGCTGCGTGC 60.813 61.111 0.00 0.00 41.94 5.34
774 778 3.295304 TATCGTGTGGCTGCGTGCT 62.295 57.895 0.00 0.00 42.39 4.40
778 782 3.934962 TGTGGCTGCGTGCTGGTA 61.935 61.111 0.00 0.00 42.39 3.25
779 783 3.423154 GTGGCTGCGTGCTGGTAC 61.423 66.667 0.00 0.00 42.39 3.34
781 785 4.735132 GGCTGCGTGCTGGTACGA 62.735 66.667 14.64 0.50 46.46 3.43
782 786 3.479269 GCTGCGTGCTGGTACGAC 61.479 66.667 14.64 6.97 46.46 4.34
783 787 2.809601 CTGCGTGCTGGTACGACC 60.810 66.667 14.64 0.00 46.46 4.79
784 788 4.710695 TGCGTGCTGGTACGACCG 62.711 66.667 14.64 0.00 46.46 4.79
790 794 3.697747 CTGGTACGACCGGCCCAA 61.698 66.667 0.00 0.00 42.58 4.12
791 795 3.240011 TGGTACGACCGGCCCAAA 61.240 61.111 0.00 0.00 42.58 3.28
792 796 2.435410 GGTACGACCGGCCCAAAG 60.435 66.667 0.00 0.00 0.00 2.77
793 797 2.344872 GTACGACCGGCCCAAAGT 59.655 61.111 0.00 0.00 0.00 2.66
794 798 1.301953 GTACGACCGGCCCAAAGTT 60.302 57.895 0.00 0.00 0.00 2.66
795 799 1.301874 TACGACCGGCCCAAAGTTG 60.302 57.895 0.00 0.00 0.00 3.16
819 823 4.958396 CGCGCCCGCTCGTAGTAG 62.958 72.222 11.12 0.00 39.32 2.57
820 824 3.885521 GCGCCCGCTCGTAGTAGT 61.886 66.667 5.27 0.00 38.26 2.73
821 825 2.024305 CGCCCGCTCGTAGTAGTG 59.976 66.667 0.00 0.00 0.00 2.74
822 826 2.758089 CGCCCGCTCGTAGTAGTGT 61.758 63.158 0.00 0.00 0.00 3.55
823 827 1.063811 GCCCGCTCGTAGTAGTGTC 59.936 63.158 0.00 0.00 0.00 3.67
824 828 1.375098 GCCCGCTCGTAGTAGTGTCT 61.375 60.000 0.00 0.00 0.00 3.41
825 829 1.093159 CCCGCTCGTAGTAGTGTCTT 58.907 55.000 0.00 0.00 0.00 3.01
826 830 1.471684 CCCGCTCGTAGTAGTGTCTTT 59.528 52.381 0.00 0.00 0.00 2.52
827 831 2.094854 CCCGCTCGTAGTAGTGTCTTTT 60.095 50.000 0.00 0.00 0.00 2.27
828 832 3.572584 CCGCTCGTAGTAGTGTCTTTTT 58.427 45.455 0.00 0.00 0.00 1.94
829 833 3.364023 CCGCTCGTAGTAGTGTCTTTTTG 59.636 47.826 0.00 0.00 0.00 2.44
830 834 3.364023 CGCTCGTAGTAGTGTCTTTTTGG 59.636 47.826 0.00 0.00 0.00 3.28
831 835 4.553323 GCTCGTAGTAGTGTCTTTTTGGA 58.447 43.478 0.00 0.00 0.00 3.53
832 836 4.986659 GCTCGTAGTAGTGTCTTTTTGGAA 59.013 41.667 0.00 0.00 0.00 3.53
833 837 5.118817 GCTCGTAGTAGTGTCTTTTTGGAAG 59.881 44.000 0.00 0.00 0.00 3.46
834 838 5.535333 TCGTAGTAGTGTCTTTTTGGAAGG 58.465 41.667 0.00 0.00 0.00 3.46
864 868 5.757850 ATTTTTGTTCGCTGAGAGAAACT 57.242 34.783 0.00 0.00 0.00 2.66
873 877 5.570344 TCGCTGAGAGAAACTAATAACTCG 58.430 41.667 0.00 0.00 34.98 4.18
951 955 3.976339 CGAGAGGCCGATCAGAATT 57.024 52.632 10.38 0.00 0.00 2.17
952 956 1.495878 CGAGAGGCCGATCAGAATTG 58.504 55.000 10.38 0.00 0.00 2.32
953 957 1.871408 CGAGAGGCCGATCAGAATTGG 60.871 57.143 10.38 0.00 39.24 3.16
954 958 1.414181 GAGAGGCCGATCAGAATTGGA 59.586 52.381 0.00 0.00 38.59 3.53
955 959 1.415659 AGAGGCCGATCAGAATTGGAG 59.584 52.381 0.00 0.00 38.59 3.86
956 960 1.414181 GAGGCCGATCAGAATTGGAGA 59.586 52.381 0.00 0.00 38.59 3.71
957 961 1.139853 AGGCCGATCAGAATTGGAGAC 59.860 52.381 0.00 0.00 38.59 3.36
958 962 1.587547 GCCGATCAGAATTGGAGACC 58.412 55.000 0.00 0.00 38.59 3.85
959 963 1.811941 GCCGATCAGAATTGGAGACCC 60.812 57.143 0.00 0.00 38.59 4.46
960 964 1.202698 CCGATCAGAATTGGAGACCCC 60.203 57.143 0.00 0.00 38.59 4.95
961 965 1.486310 CGATCAGAATTGGAGACCCCA 59.514 52.381 0.00 0.00 44.93 4.96
968 972 3.936408 TGGAGACCCCAAGCCAAT 58.064 55.556 0.00 0.00 43.29 3.16
969 973 1.691219 TGGAGACCCCAAGCCAATC 59.309 57.895 0.00 0.00 43.29 2.67
1233 1237 4.664677 GGACGTGGACGCAGCAGT 62.665 66.667 0.00 0.00 44.43 4.40
1339 1349 2.186243 AGAGATCAAGGAGAAGCAGCA 58.814 47.619 0.00 0.00 0.00 4.41
1364 1374 1.275291 TCGCTCGAGTGGGAAGAAAAT 59.725 47.619 24.88 0.00 0.00 1.82
1381 1391 4.576463 AGAAAATCAAGGGATCCGATTTCG 59.424 41.667 20.04 3.86 38.16 3.46
1696 1718 3.077519 GCCGGGTACGTGATGAGCT 62.078 63.158 2.18 0.00 38.78 4.09
1828 1850 1.194781 GGAGAGCAAGGTCAGGGACA 61.195 60.000 1.84 0.00 33.68 4.02
1887 1909 1.142748 CGAGACAGAGCATGACCCC 59.857 63.158 0.00 0.00 0.00 4.95
1917 1939 1.822990 CCTCCTTCACGTTAGGTAGCA 59.177 52.381 12.07 0.00 34.29 3.49
1937 1959 3.853671 GCAATCGAGTAGCAACAATTTGG 59.146 43.478 0.78 0.00 32.81 3.28
1939 1961 4.946784 ATCGAGTAGCAACAATTTGGTC 57.053 40.909 0.78 0.00 42.54 4.02
1996 2022 0.445436 GACTTCGCTGCACATCTTGG 59.555 55.000 0.00 0.00 0.00 3.61
2090 2132 6.149973 TCAGGTATTGAGCATCTTTGTTTCAG 59.850 38.462 0.00 0.00 34.92 3.02
2099 2141 4.268405 GCATCTTTGTTTCAGTGTTTGGTG 59.732 41.667 0.00 0.00 0.00 4.17
2103 2145 4.991153 TTGTTTCAGTGTTTGGTGCATA 57.009 36.364 0.00 0.00 0.00 3.14
2104 2146 4.991153 TGTTTCAGTGTTTGGTGCATAA 57.009 36.364 0.00 0.00 0.00 1.90
2105 2147 4.677584 TGTTTCAGTGTTTGGTGCATAAC 58.322 39.130 0.00 0.00 0.00 1.89
2111 2153 4.156556 CAGTGTTTGGTGCATAACATAGCT 59.843 41.667 12.96 0.00 36.72 3.32
2283 2329 4.697352 CCTGTCAAAAGTTATCAGTCCAGG 59.303 45.833 0.00 0.00 0.00 4.45
2315 2369 4.329462 TTTGTCAAAAGTTACCCATGGC 57.671 40.909 6.09 0.00 0.00 4.40
2331 2385 1.583477 GGCTGCACTGAAGAAAGCC 59.417 57.895 0.50 0.00 46.04 4.35
2332 2386 1.208614 GCTGCACTGAAGAAAGCCG 59.791 57.895 0.00 0.00 0.00 5.52
2384 2438 9.155975 TCTTGCTTTATTATGACAAGTTCTCTC 57.844 33.333 0.00 0.00 38.99 3.20
2405 2459 7.450014 TCTCTCTGAGTCTTCTGTTTCTTACAT 59.550 37.037 4.32 0.00 35.85 2.29
2406 2460 7.598278 TCTCTGAGTCTTCTGTTTCTTACATC 58.402 38.462 4.32 0.00 35.85 3.06
2431 3688 7.344612 TCTGTCTGTATTTGGGCTTCTATTAGA 59.655 37.037 0.00 0.00 0.00 2.10
2432 3689 7.500992 TGTCTGTATTTGGGCTTCTATTAGAG 58.499 38.462 0.00 0.00 0.00 2.43
2433 3690 6.425417 GTCTGTATTTGGGCTTCTATTAGAGC 59.575 42.308 6.60 6.60 0.00 4.09
2434 3691 6.099701 TCTGTATTTGGGCTTCTATTAGAGCA 59.900 38.462 13.52 0.00 0.00 4.26
2435 3692 6.841601 TGTATTTGGGCTTCTATTAGAGCAT 58.158 36.000 13.52 5.12 0.00 3.79
2436 3693 6.712095 TGTATTTGGGCTTCTATTAGAGCATG 59.288 38.462 13.52 0.00 0.00 4.06
2437 3694 4.778213 TTGGGCTTCTATTAGAGCATGT 57.222 40.909 13.52 0.00 0.00 3.21
2438 3695 5.887214 TTGGGCTTCTATTAGAGCATGTA 57.113 39.130 13.52 0.00 0.00 2.29
2439 3696 5.215252 TGGGCTTCTATTAGAGCATGTAC 57.785 43.478 13.52 0.00 0.00 2.90
2440 3697 4.653801 TGGGCTTCTATTAGAGCATGTACA 59.346 41.667 0.00 0.00 0.00 2.90
2441 3698 5.130311 TGGGCTTCTATTAGAGCATGTACAA 59.870 40.000 0.00 0.00 0.00 2.41
2442 3699 6.183361 TGGGCTTCTATTAGAGCATGTACAAT 60.183 38.462 0.00 0.00 0.00 2.71
2443 3700 6.148480 GGGCTTCTATTAGAGCATGTACAATG 59.852 42.308 0.00 0.12 0.00 2.82
2444 3701 6.148480 GGCTTCTATTAGAGCATGTACAATGG 59.852 42.308 0.00 0.00 0.00 3.16
2445 3702 6.708054 GCTTCTATTAGAGCATGTACAATGGT 59.292 38.462 0.00 4.68 0.00 3.55
2446 3703 7.307632 GCTTCTATTAGAGCATGTACAATGGTG 60.308 40.741 0.00 0.00 0.00 4.17
2447 3704 6.524734 TCTATTAGAGCATGTACAATGGTGG 58.475 40.000 0.00 0.00 0.00 4.61
2448 3705 1.755179 AGAGCATGTACAATGGTGGC 58.245 50.000 0.00 0.00 0.00 5.01
2449 3706 1.004628 AGAGCATGTACAATGGTGGCA 59.995 47.619 0.00 0.00 0.00 4.92
2450 3707 2.026641 GAGCATGTACAATGGTGGCAT 58.973 47.619 0.00 0.00 0.00 4.40
2451 3708 3.117926 AGAGCATGTACAATGGTGGCATA 60.118 43.478 0.00 0.00 0.00 3.14
2452 3709 3.822735 GAGCATGTACAATGGTGGCATAT 59.177 43.478 0.00 0.00 0.00 1.78
2453 3710 3.570975 AGCATGTACAATGGTGGCATATG 59.429 43.478 0.00 0.00 0.00 1.78
2454 3711 3.569277 GCATGTACAATGGTGGCATATGA 59.431 43.478 6.97 0.00 0.00 2.15
2455 3712 4.037803 GCATGTACAATGGTGGCATATGAA 59.962 41.667 6.97 0.00 0.00 2.57
2456 3713 5.279106 GCATGTACAATGGTGGCATATGAAT 60.279 40.000 6.97 0.00 0.00 2.57
2457 3714 5.771153 TGTACAATGGTGGCATATGAATG 57.229 39.130 6.97 0.00 36.09 2.67
2473 3730 8.549338 CATATGAATGCAGATGTCTCATAACT 57.451 34.615 0.00 0.00 38.57 2.24
2474 3731 9.649167 CATATGAATGCAGATGTCTCATAACTA 57.351 33.333 0.00 0.00 38.57 2.24
2476 3733 8.969260 ATGAATGCAGATGTCTCATAACTAAA 57.031 30.769 0.00 0.00 0.00 1.85
2477 3734 8.791327 TGAATGCAGATGTCTCATAACTAAAA 57.209 30.769 0.00 0.00 0.00 1.52
2478 3735 8.886719 TGAATGCAGATGTCTCATAACTAAAAG 58.113 33.333 0.00 0.00 0.00 2.27
2479 3736 8.798859 AATGCAGATGTCTCATAACTAAAAGT 57.201 30.769 0.00 0.00 0.00 2.66
2480 3737 9.890629 AATGCAGATGTCTCATAACTAAAAGTA 57.109 29.630 0.00 0.00 0.00 2.24
2481 3738 8.932945 TGCAGATGTCTCATAACTAAAAGTAG 57.067 34.615 0.00 0.00 0.00 2.57
2482 3739 8.531982 TGCAGATGTCTCATAACTAAAAGTAGT 58.468 33.333 0.00 0.00 42.66 2.73
2488 3745 9.706691 TGTCTCATAACTAAAAGTAGTTTGGAG 57.293 33.333 14.67 14.67 46.38 3.86
2489 3746 9.708092 GTCTCATAACTAAAAGTAGTTTGGAGT 57.292 33.333 17.50 1.09 46.38 3.85
2523 3780 2.252976 TTTTTGTCCCCAATGCAAGC 57.747 45.000 0.00 0.00 0.00 4.01
2524 3781 1.422531 TTTTGTCCCCAATGCAAGCT 58.577 45.000 0.00 0.00 0.00 3.74
2525 3782 2.300956 TTTGTCCCCAATGCAAGCTA 57.699 45.000 0.00 0.00 0.00 3.32
2526 3783 2.300956 TTGTCCCCAATGCAAGCTAA 57.699 45.000 0.00 0.00 0.00 3.09
2527 3784 1.544724 TGTCCCCAATGCAAGCTAAC 58.455 50.000 0.00 0.00 0.00 2.34
2528 3785 1.202989 TGTCCCCAATGCAAGCTAACA 60.203 47.619 0.00 0.00 0.00 2.41
2529 3786 1.892474 GTCCCCAATGCAAGCTAACAA 59.108 47.619 0.00 0.00 0.00 2.83
2530 3787 2.497273 GTCCCCAATGCAAGCTAACAAT 59.503 45.455 0.00 0.00 0.00 2.71
2531 3788 3.699038 GTCCCCAATGCAAGCTAACAATA 59.301 43.478 0.00 0.00 0.00 1.90
2532 3789 3.953612 TCCCCAATGCAAGCTAACAATAG 59.046 43.478 0.00 0.00 0.00 1.73
2539 3796 4.878878 GCTAACAATAGCGGGCCT 57.121 55.556 0.84 0.00 44.70 5.19
2540 3797 2.618165 GCTAACAATAGCGGGCCTC 58.382 57.895 0.84 0.00 44.70 4.70
2541 3798 1.222115 GCTAACAATAGCGGGCCTCG 61.222 60.000 0.84 5.90 44.70 4.63
2542 3799 0.104304 CTAACAATAGCGGGCCTCGT 59.896 55.000 13.97 5.16 41.72 4.18
2543 3800 0.538118 TAACAATAGCGGGCCTCGTT 59.462 50.000 13.97 10.98 41.72 3.85
2544 3801 0.538118 AACAATAGCGGGCCTCGTTA 59.462 50.000 13.97 12.63 41.72 3.18
2545 3802 0.538118 ACAATAGCGGGCCTCGTTAA 59.462 50.000 12.60 2.04 38.03 2.01
2546 3803 1.217882 CAATAGCGGGCCTCGTTAAG 58.782 55.000 12.60 6.60 38.03 1.85
2547 3804 1.117150 AATAGCGGGCCTCGTTAAGA 58.883 50.000 12.60 0.00 38.03 2.10
2548 3805 0.674534 ATAGCGGGCCTCGTTAAGAG 59.325 55.000 12.60 0.00 46.44 2.85
2577 3834 9.372369 AGAAAATAAAGACTCTAGTACACATGC 57.628 33.333 0.00 0.00 0.00 4.06
2578 3835 9.151471 GAAAATAAAGACTCTAGTACACATGCA 57.849 33.333 0.00 0.00 0.00 3.96
2579 3836 9.672673 AAAATAAAGACTCTAGTACACATGCAT 57.327 29.630 0.00 0.00 0.00 3.96
2580 3837 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
2581 3838 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
2582 3839 6.537453 AAGACTCTAGTACACATGCATCTT 57.463 37.500 0.00 0.00 0.00 2.40
2583 3840 6.537453 AGACTCTAGTACACATGCATCTTT 57.463 37.500 0.00 0.00 0.00 2.52
2584 3841 7.646548 AGACTCTAGTACACATGCATCTTTA 57.353 36.000 0.00 0.00 0.00 1.85
2585 3842 8.243961 AGACTCTAGTACACATGCATCTTTAT 57.756 34.615 0.00 0.00 0.00 1.40
2586 3843 8.700051 AGACTCTAGTACACATGCATCTTTATT 58.300 33.333 0.00 0.00 0.00 1.40
2587 3844 9.319143 GACTCTAGTACACATGCATCTTTATTT 57.681 33.333 0.00 0.00 0.00 1.40
2588 3845 9.672673 ACTCTAGTACACATGCATCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
2592 3849 8.970691 AGTACACATGCATCTTTATTTTTCAC 57.029 30.769 0.00 0.00 0.00 3.18
2593 3850 8.796475 AGTACACATGCATCTTTATTTTTCACT 58.204 29.630 0.00 0.00 0.00 3.41
2594 3851 7.878477 ACACATGCATCTTTATTTTTCACTG 57.122 32.000 0.00 0.00 0.00 3.66
2595 3852 6.366877 ACACATGCATCTTTATTTTTCACTGC 59.633 34.615 0.00 0.00 0.00 4.40
2596 3853 6.366604 CACATGCATCTTTATTTTTCACTGCA 59.633 34.615 0.00 0.00 41.96 4.41
2597 3854 6.366877 ACATGCATCTTTATTTTTCACTGCAC 59.633 34.615 0.00 0.00 40.73 4.57
2598 3855 5.840715 TGCATCTTTATTTTTCACTGCACA 58.159 33.333 0.00 0.00 33.80 4.57
2599 3856 5.691305 TGCATCTTTATTTTTCACTGCACAC 59.309 36.000 0.00 0.00 33.80 3.82
2600 3857 5.922544 GCATCTTTATTTTTCACTGCACACT 59.077 36.000 0.00 0.00 0.00 3.55
2601 3858 6.129009 GCATCTTTATTTTTCACTGCACACTG 60.129 38.462 0.00 0.00 0.00 3.66
2602 3859 5.830912 TCTTTATTTTTCACTGCACACTGG 58.169 37.500 0.00 0.00 0.00 4.00
2603 3860 5.592282 TCTTTATTTTTCACTGCACACTGGA 59.408 36.000 0.00 0.00 0.00 3.86
2604 3861 3.715628 ATTTTTCACTGCACACTGGAC 57.284 42.857 0.00 0.00 0.00 4.02
2605 3862 1.388547 TTTTCACTGCACACTGGACC 58.611 50.000 0.00 0.00 0.00 4.46
2606 3863 0.254462 TTTCACTGCACACTGGACCA 59.746 50.000 0.00 0.00 0.00 4.02
2607 3864 0.463654 TTCACTGCACACTGGACCAC 60.464 55.000 0.00 0.00 0.00 4.16
2608 3865 1.153188 CACTGCACACTGGACCACA 60.153 57.895 0.00 0.00 0.00 4.17
2609 3866 1.153168 ACTGCACACTGGACCACAC 60.153 57.895 0.00 0.00 0.00 3.82
2610 3867 1.146930 CTGCACACTGGACCACACT 59.853 57.895 0.00 0.00 0.00 3.55
2611 3868 0.464373 CTGCACACTGGACCACACTT 60.464 55.000 0.00 0.00 0.00 3.16
2612 3869 0.034574 TGCACACTGGACCACACTTT 60.035 50.000 0.00 0.00 0.00 2.66
2613 3870 1.210722 TGCACACTGGACCACACTTTA 59.789 47.619 0.00 0.00 0.00 1.85
2614 3871 2.158682 TGCACACTGGACCACACTTTAT 60.159 45.455 0.00 0.00 0.00 1.40
2615 3872 2.484264 GCACACTGGACCACACTTTATC 59.516 50.000 0.00 0.00 0.00 1.75
2616 3873 3.807209 GCACACTGGACCACACTTTATCT 60.807 47.826 0.00 0.00 0.00 1.98
2617 3874 3.997021 CACACTGGACCACACTTTATCTC 59.003 47.826 0.00 0.00 0.00 2.75
2618 3875 3.904339 ACACTGGACCACACTTTATCTCT 59.096 43.478 0.00 0.00 0.00 3.10
2619 3876 4.021016 ACACTGGACCACACTTTATCTCTC 60.021 45.833 0.00 0.00 0.00 3.20
2620 3877 3.515901 ACTGGACCACACTTTATCTCTCC 59.484 47.826 0.00 0.00 0.00 3.71
2621 3878 3.515502 CTGGACCACACTTTATCTCTCCA 59.484 47.826 0.00 0.00 0.00 3.86
2622 3879 3.907474 TGGACCACACTTTATCTCTCCAA 59.093 43.478 0.00 0.00 0.00 3.53
2623 3880 4.020218 TGGACCACACTTTATCTCTCCAAG 60.020 45.833 0.00 0.00 0.00 3.61
2624 3881 3.935828 GACCACACTTTATCTCTCCAAGC 59.064 47.826 0.00 0.00 0.00 4.01
2625 3882 3.327757 ACCACACTTTATCTCTCCAAGCA 59.672 43.478 0.00 0.00 0.00 3.91
2626 3883 3.686726 CCACACTTTATCTCTCCAAGCAC 59.313 47.826 0.00 0.00 0.00 4.40
2627 3884 3.686726 CACACTTTATCTCTCCAAGCACC 59.313 47.826 0.00 0.00 0.00 5.01
2628 3885 3.274288 CACTTTATCTCTCCAAGCACCC 58.726 50.000 0.00 0.00 0.00 4.61
2629 3886 2.093447 ACTTTATCTCTCCAAGCACCCG 60.093 50.000 0.00 0.00 0.00 5.28
2630 3887 0.178068 TTATCTCTCCAAGCACCCGC 59.822 55.000 0.00 0.00 38.99 6.13
2631 3888 1.686325 TATCTCTCCAAGCACCCGCC 61.686 60.000 0.00 0.00 39.83 6.13
2632 3889 3.710722 CTCTCCAAGCACCCGCCT 61.711 66.667 0.00 0.00 39.83 5.52
2633 3890 3.672295 CTCTCCAAGCACCCGCCTC 62.672 68.421 0.00 0.00 39.83 4.70
2634 3891 4.785453 CTCCAAGCACCCGCCTCC 62.785 72.222 0.00 0.00 39.83 4.30
2641 3898 4.463879 CACCCGCCTCCTGCAGAG 62.464 72.222 17.39 10.61 42.83 3.35
2642 3899 4.704103 ACCCGCCTCCTGCAGAGA 62.704 66.667 17.39 10.01 46.50 3.10
2643 3900 3.393970 CCCGCCTCCTGCAGAGAA 61.394 66.667 17.39 0.00 46.50 2.87
2644 3901 2.739996 CCCGCCTCCTGCAGAGAAT 61.740 63.158 17.39 0.00 46.50 2.40
2645 3902 1.222936 CCGCCTCCTGCAGAGAATT 59.777 57.895 17.39 0.00 46.50 2.17
2646 3903 0.813210 CCGCCTCCTGCAGAGAATTC 60.813 60.000 17.39 0.00 46.50 2.17
2647 3904 0.813210 CGCCTCCTGCAGAGAATTCC 60.813 60.000 17.39 0.00 46.50 3.01
2648 3905 0.813210 GCCTCCTGCAGAGAATTCCG 60.813 60.000 17.39 0.00 46.50 4.30
2649 3906 0.813210 CCTCCTGCAGAGAATTCCGC 60.813 60.000 17.39 3.51 46.50 5.54
2650 3907 0.177604 CTCCTGCAGAGAATTCCGCT 59.822 55.000 17.39 0.00 46.50 5.52
2651 3908 0.615331 TCCTGCAGAGAATTCCGCTT 59.385 50.000 17.39 0.00 0.00 4.68
2652 3909 1.012841 CCTGCAGAGAATTCCGCTTC 58.987 55.000 17.39 0.00 0.00 3.86
2653 3910 1.012841 CTGCAGAGAATTCCGCTTCC 58.987 55.000 8.42 0.00 0.00 3.46
2654 3911 0.392998 TGCAGAGAATTCCGCTTCCC 60.393 55.000 0.65 0.00 0.00 3.97
2655 3912 0.107459 GCAGAGAATTCCGCTTCCCT 60.107 55.000 0.65 0.00 0.00 4.20
2656 3913 1.139058 GCAGAGAATTCCGCTTCCCTA 59.861 52.381 0.65 0.00 0.00 3.53
2657 3914 2.224402 GCAGAGAATTCCGCTTCCCTAT 60.224 50.000 0.65 0.00 0.00 2.57
2658 3915 3.658709 CAGAGAATTCCGCTTCCCTATC 58.341 50.000 0.65 0.00 0.00 2.08
2659 3916 2.635427 AGAGAATTCCGCTTCCCTATCC 59.365 50.000 0.65 0.00 0.00 2.59
2660 3917 1.344763 AGAATTCCGCTTCCCTATCCG 59.655 52.381 0.65 0.00 0.00 4.18
2661 3918 1.343465 GAATTCCGCTTCCCTATCCGA 59.657 52.381 0.00 0.00 0.00 4.55
2662 3919 1.420430 ATTCCGCTTCCCTATCCGAA 58.580 50.000 0.00 0.00 0.00 4.30
2663 3920 0.462789 TTCCGCTTCCCTATCCGAAC 59.537 55.000 0.00 0.00 0.00 3.95
2664 3921 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
2665 3922 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
2666 3923 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
2667 3924 1.893801 CGCTTCCCTATCCGAACCTAT 59.106 52.381 0.00 0.00 0.00 2.57
2668 3925 2.299297 CGCTTCCCTATCCGAACCTATT 59.701 50.000 0.00 0.00 0.00 1.73
2669 3926 3.244112 CGCTTCCCTATCCGAACCTATTT 60.244 47.826 0.00 0.00 0.00 1.40
2670 3927 4.715713 GCTTCCCTATCCGAACCTATTTT 58.284 43.478 0.00 0.00 0.00 1.82
2671 3928 5.510179 CGCTTCCCTATCCGAACCTATTTTA 60.510 44.000 0.00 0.00 0.00 1.52
2672 3929 6.473758 GCTTCCCTATCCGAACCTATTTTAT 58.526 40.000 0.00 0.00 0.00 1.40
2673 3930 6.594547 GCTTCCCTATCCGAACCTATTTTATC 59.405 42.308 0.00 0.00 0.00 1.75
2674 3931 7.527363 GCTTCCCTATCCGAACCTATTTTATCT 60.527 40.741 0.00 0.00 0.00 1.98
2675 3932 8.961293 TTCCCTATCCGAACCTATTTTATCTA 57.039 34.615 0.00 0.00 0.00 1.98
2676 3933 8.961293 TCCCTATCCGAACCTATTTTATCTAA 57.039 34.615 0.00 0.00 0.00 2.10
2677 3934 9.556772 TCCCTATCCGAACCTATTTTATCTAAT 57.443 33.333 0.00 0.00 0.00 1.73
2683 3940 9.246670 TCCGAACCTATTTTATCTAATATCCGA 57.753 33.333 0.00 0.00 0.00 4.55
2694 3951 5.854010 TCTAATATCCGATCCTACATGGC 57.146 43.478 0.00 0.00 35.26 4.40
2695 3952 5.269189 TCTAATATCCGATCCTACATGGCA 58.731 41.667 0.00 0.00 35.26 4.92
2696 3953 5.899547 TCTAATATCCGATCCTACATGGCAT 59.100 40.000 0.00 0.00 35.26 4.40
2697 3954 7.066781 TCTAATATCCGATCCTACATGGCATA 58.933 38.462 0.00 0.00 35.26 3.14
2698 3955 3.895232 ATCCGATCCTACATGGCATAC 57.105 47.619 0.00 0.00 35.26 2.39
2699 3956 1.544246 TCCGATCCTACATGGCATACG 59.456 52.381 0.00 0.00 35.26 3.06
2700 3957 1.544246 CCGATCCTACATGGCATACGA 59.456 52.381 0.00 0.00 35.26 3.43
2701 3958 2.416027 CCGATCCTACATGGCATACGAG 60.416 54.545 0.00 0.00 35.26 4.18
2702 3959 2.416027 CGATCCTACATGGCATACGAGG 60.416 54.545 12.92 12.92 35.26 4.63
2703 3960 0.679505 TCCTACATGGCATACGAGGC 59.320 55.000 13.89 0.00 35.26 4.70
2708 3965 4.855105 TGGCATACGAGGCATCAC 57.145 55.556 0.00 0.00 39.34 3.06
2709 3966 1.146041 TGGCATACGAGGCATCACC 59.854 57.895 0.00 0.00 39.34 4.02
2710 3967 1.598130 GGCATACGAGGCATCACCC 60.598 63.158 0.00 0.00 40.58 4.61
2711 3968 1.447643 GCATACGAGGCATCACCCT 59.552 57.895 0.00 0.00 40.58 4.34
2712 3969 0.882042 GCATACGAGGCATCACCCTG 60.882 60.000 0.00 0.00 40.58 4.45
2713 3970 0.752658 CATACGAGGCATCACCCTGA 59.247 55.000 0.00 0.00 40.58 3.86
2714 3971 1.043816 ATACGAGGCATCACCCTGAG 58.956 55.000 0.00 0.00 40.58 3.35
2715 3972 0.033503 TACGAGGCATCACCCTGAGA 60.034 55.000 0.00 0.00 40.58 3.27
2716 3973 1.142748 CGAGGCATCACCCTGAGAC 59.857 63.158 0.00 0.00 40.58 3.36
2717 3974 1.326213 CGAGGCATCACCCTGAGACT 61.326 60.000 0.00 0.00 40.58 3.24
2718 3975 1.781786 GAGGCATCACCCTGAGACTA 58.218 55.000 0.00 0.00 40.58 2.59
2719 3976 2.324541 GAGGCATCACCCTGAGACTAT 58.675 52.381 0.00 0.00 40.58 2.12
2720 3977 2.036992 GAGGCATCACCCTGAGACTATG 59.963 54.545 0.00 0.00 40.58 2.23
2721 3978 1.542108 GGCATCACCCTGAGACTATGC 60.542 57.143 0.00 0.00 39.13 3.14
2722 3979 1.139654 GCATCACCCTGAGACTATGCA 59.860 52.381 0.00 0.00 39.53 3.96
2723 3980 2.224475 GCATCACCCTGAGACTATGCAT 60.224 50.000 3.79 3.79 39.53 3.96
2724 3981 3.746751 GCATCACCCTGAGACTATGCATT 60.747 47.826 3.54 0.00 39.53 3.56
2725 3982 3.548745 TCACCCTGAGACTATGCATTG 57.451 47.619 3.54 5.32 0.00 2.82
2726 3983 2.840038 TCACCCTGAGACTATGCATTGT 59.160 45.455 13.75 13.75 0.00 2.71
2727 3984 4.030216 TCACCCTGAGACTATGCATTGTA 58.970 43.478 13.85 0.00 0.00 2.41
2728 3985 4.122776 CACCCTGAGACTATGCATTGTAC 58.877 47.826 13.85 11.33 0.00 2.90
2729 3986 3.774766 ACCCTGAGACTATGCATTGTACA 59.225 43.478 13.85 14.76 0.00 2.90
2730 3987 4.410228 ACCCTGAGACTATGCATTGTACAT 59.590 41.667 13.85 3.55 0.00 2.29
2731 3988 4.753610 CCCTGAGACTATGCATTGTACATG 59.246 45.833 13.85 12.76 0.00 3.21
2732 3989 4.212847 CCTGAGACTATGCATTGTACATGC 59.787 45.833 13.85 17.91 44.76 4.06
2733 3990 4.129380 TGAGACTATGCATTGTACATGCC 58.871 43.478 13.85 0.88 43.94 4.40
2734 3991 3.480470 AGACTATGCATTGTACATGCCC 58.520 45.455 13.85 0.19 43.94 5.36
2735 3992 3.137176 AGACTATGCATTGTACATGCCCT 59.863 43.478 13.85 13.49 43.94 5.19
2736 3993 3.885297 GACTATGCATTGTACATGCCCTT 59.115 43.478 13.85 11.92 43.94 3.95
2737 3994 5.047566 ACTATGCATTGTACATGCCCTTA 57.952 39.130 12.24 12.26 43.94 2.69
2738 3995 5.065914 ACTATGCATTGTACATGCCCTTAG 58.934 41.667 12.24 18.91 43.94 2.18
2757 4014 2.045045 TTCCAGCTGAATGGCCCG 60.045 61.111 17.39 0.00 40.41 6.13
2832 4089 3.499157 GGCTACACGGTGTACAAAATTCA 59.501 43.478 16.63 0.00 0.00 2.57
2847 4104 7.499321 ACAAAATTCATGTCAAATGCATGTT 57.501 28.000 0.00 0.00 42.94 2.71
2877 4134 6.137415 TCGTAAATTTCAAAACGATCGCTTT 58.863 32.000 16.60 13.29 39.25 3.51
2878 4135 7.289395 TCGTAAATTTCAAAACGATCGCTTTA 58.711 30.769 16.60 0.94 39.25 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.707030 TCATGGAAAATTAGCTGCACAG 57.293 40.909 1.02 0.00 0.00 3.66
5 6 3.505680 ACGTTCATGGAAAATTAGCTGCA 59.494 39.130 1.02 0.00 0.00 4.41
6 7 4.096732 ACGTTCATGGAAAATTAGCTGC 57.903 40.909 0.00 0.00 0.00 5.25
7 8 5.345741 CCAAACGTTCATGGAAAATTAGCTG 59.654 40.000 12.81 0.00 39.12 4.24
10 11 5.167845 CCCCAAACGTTCATGGAAAATTAG 58.832 41.667 18.61 2.27 39.12 1.73
11 12 4.589374 ACCCCAAACGTTCATGGAAAATTA 59.411 37.500 18.61 0.00 39.12 1.40
12 13 3.389656 ACCCCAAACGTTCATGGAAAATT 59.610 39.130 18.61 0.00 39.12 1.82
13 14 2.969262 ACCCCAAACGTTCATGGAAAAT 59.031 40.909 18.61 0.76 39.12 1.82
14 15 2.389715 ACCCCAAACGTTCATGGAAAA 58.610 42.857 18.61 0.00 39.12 2.29
15 16 2.074729 ACCCCAAACGTTCATGGAAA 57.925 45.000 18.61 0.00 39.12 3.13
16 17 2.074729 AACCCCAAACGTTCATGGAA 57.925 45.000 18.61 0.00 39.12 3.53
17 18 2.074729 AAACCCCAAACGTTCATGGA 57.925 45.000 18.61 0.00 39.12 3.41
18 19 2.230266 CCTAAACCCCAAACGTTCATGG 59.770 50.000 11.40 11.40 36.42 3.66
19 20 2.230266 CCCTAAACCCCAAACGTTCATG 59.770 50.000 0.00 0.00 0.00 3.07
20 21 2.158430 ACCCTAAACCCCAAACGTTCAT 60.158 45.455 0.00 0.00 0.00 2.57
21 22 1.214923 ACCCTAAACCCCAAACGTTCA 59.785 47.619 0.00 0.00 0.00 3.18
22 23 1.985473 ACCCTAAACCCCAAACGTTC 58.015 50.000 0.00 0.00 0.00 3.95
23 24 2.457813 AACCCTAAACCCCAAACGTT 57.542 45.000 0.00 0.00 0.00 3.99
24 25 2.457813 AAACCCTAAACCCCAAACGT 57.542 45.000 0.00 0.00 0.00 3.99
25 26 2.821378 CCTAAACCCTAAACCCCAAACG 59.179 50.000 0.00 0.00 0.00 3.60
26 27 3.167485 CCCTAAACCCTAAACCCCAAAC 58.833 50.000 0.00 0.00 0.00 2.93
27 28 2.796561 ACCCTAAACCCTAAACCCCAAA 59.203 45.455 0.00 0.00 0.00 3.28
28 29 2.441354 ACCCTAAACCCTAAACCCCAA 58.559 47.619 0.00 0.00 0.00 4.12
29 30 2.152680 ACCCTAAACCCTAAACCCCA 57.847 50.000 0.00 0.00 0.00 4.96
30 31 2.651334 AGAACCCTAAACCCTAAACCCC 59.349 50.000 0.00 0.00 0.00 4.95
31 32 3.074985 ACAGAACCCTAAACCCTAAACCC 59.925 47.826 0.00 0.00 0.00 4.11
32 33 4.377762 ACAGAACCCTAAACCCTAAACC 57.622 45.455 0.00 0.00 0.00 3.27
33 34 5.868454 TGTACAGAACCCTAAACCCTAAAC 58.132 41.667 0.00 0.00 0.00 2.01
34 35 6.707273 ATGTACAGAACCCTAAACCCTAAA 57.293 37.500 0.33 0.00 0.00 1.85
35 36 6.730038 TGTATGTACAGAACCCTAAACCCTAA 59.270 38.462 0.33 0.00 0.00 2.69
36 37 6.262980 TGTATGTACAGAACCCTAAACCCTA 58.737 40.000 0.33 0.00 0.00 3.53
37 38 5.095809 TGTATGTACAGAACCCTAAACCCT 58.904 41.667 0.33 0.00 0.00 4.34
38 39 5.425196 TGTATGTACAGAACCCTAAACCC 57.575 43.478 0.33 0.00 0.00 4.11
39 40 6.646267 TCATGTATGTACAGAACCCTAAACC 58.354 40.000 0.33 0.00 39.92 3.27
40 41 7.201496 CGTTCATGTATGTACAGAACCCTAAAC 60.201 40.741 15.41 10.23 39.00 2.01
41 42 6.814644 CGTTCATGTATGTACAGAACCCTAAA 59.185 38.462 15.41 0.00 39.00 1.85
42 43 6.071221 ACGTTCATGTATGTACAGAACCCTAA 60.071 38.462 15.41 3.56 39.00 2.69
43 44 5.419788 ACGTTCATGTATGTACAGAACCCTA 59.580 40.000 15.41 0.00 39.00 3.53
44 45 4.222145 ACGTTCATGTATGTACAGAACCCT 59.778 41.667 15.41 3.09 39.00 4.34
45 46 4.501071 ACGTTCATGTATGTACAGAACCC 58.499 43.478 15.41 0.00 39.00 4.11
46 47 5.636121 TGAACGTTCATGTATGTACAGAACC 59.364 40.000 26.53 6.22 39.00 3.62
47 48 6.699895 TGAACGTTCATGTATGTACAGAAC 57.300 37.500 26.53 12.57 39.92 3.01
48 49 9.030301 CATATGAACGTTCATGTATGTACAGAA 57.970 33.333 40.58 23.57 46.68 3.02
49 50 8.410141 TCATATGAACGTTCATGTATGTACAGA 58.590 33.333 40.58 26.68 46.68 3.41
50 51 8.574196 TCATATGAACGTTCATGTATGTACAG 57.426 34.615 40.58 25.26 46.68 2.74
51 52 8.194769 ACTCATATGAACGTTCATGTATGTACA 58.805 33.333 40.58 25.23 46.68 2.90
52 53 8.480066 CACTCATATGAACGTTCATGTATGTAC 58.520 37.037 40.58 11.11 46.68 2.90
53 54 7.169140 GCACTCATATGAACGTTCATGTATGTA 59.831 37.037 40.58 26.47 46.68 2.29
54 55 6.018751 GCACTCATATGAACGTTCATGTATGT 60.019 38.462 40.58 31.83 46.68 2.29
55 56 6.018832 TGCACTCATATGAACGTTCATGTATG 60.019 38.462 40.58 35.28 46.68 2.39
56 57 6.048509 TGCACTCATATGAACGTTCATGTAT 58.951 36.000 40.58 29.08 46.68 2.29
57 58 5.415221 TGCACTCATATGAACGTTCATGTA 58.585 37.500 40.58 28.33 46.68 2.29
58 59 4.252878 TGCACTCATATGAACGTTCATGT 58.747 39.130 40.58 34.76 46.68 3.21
59 60 4.567959 TCTGCACTCATATGAACGTTCATG 59.432 41.667 40.58 30.91 46.68 3.07
61 62 3.926527 GTCTGCACTCATATGAACGTTCA 59.073 43.478 31.41 31.41 42.14 3.18
62 63 3.000674 CGTCTGCACTCATATGAACGTTC 60.001 47.826 21.42 21.42 0.00 3.95
63 64 2.923655 CGTCTGCACTCATATGAACGTT 59.076 45.455 14.36 0.00 0.00 3.99
64 65 2.530177 CGTCTGCACTCATATGAACGT 58.470 47.619 14.36 4.83 0.00 3.99
65 66 1.854743 CCGTCTGCACTCATATGAACG 59.145 52.381 15.25 15.25 0.00 3.95
66 67 1.594862 GCCGTCTGCACTCATATGAAC 59.405 52.381 6.90 0.00 40.77 3.18
67 68 1.939974 GCCGTCTGCACTCATATGAA 58.060 50.000 6.90 0.00 40.77 2.57
68 69 3.667448 GCCGTCTGCACTCATATGA 57.333 52.632 5.07 5.07 40.77 2.15
78 79 0.944386 TCAGAAACTTTGCCGTCTGC 59.056 50.000 0.00 0.00 37.90 4.26
79 80 3.365364 GGAATCAGAAACTTTGCCGTCTG 60.365 47.826 0.00 0.00 39.09 3.51
80 81 2.814336 GGAATCAGAAACTTTGCCGTCT 59.186 45.455 0.00 0.00 0.00 4.18
81 82 2.814336 AGGAATCAGAAACTTTGCCGTC 59.186 45.455 0.00 0.00 0.00 4.79
82 83 2.554032 CAGGAATCAGAAACTTTGCCGT 59.446 45.455 0.00 0.00 0.00 5.68
83 84 2.554032 ACAGGAATCAGAAACTTTGCCG 59.446 45.455 0.00 0.00 0.00 5.69
84 85 4.762251 ACTACAGGAATCAGAAACTTTGCC 59.238 41.667 0.00 0.00 0.00 4.52
85 86 5.948992 ACTACAGGAATCAGAAACTTTGC 57.051 39.130 0.00 0.00 0.00 3.68
86 87 7.360101 CCGTTACTACAGGAATCAGAAACTTTG 60.360 40.741 0.00 0.00 0.00 2.77
87 88 6.649557 CCGTTACTACAGGAATCAGAAACTTT 59.350 38.462 0.00 0.00 0.00 2.66
88 89 6.164176 CCGTTACTACAGGAATCAGAAACTT 58.836 40.000 0.00 0.00 0.00 2.66
89 90 5.245526 ACCGTTACTACAGGAATCAGAAACT 59.754 40.000 0.00 0.00 0.00 2.66
90 91 5.476614 ACCGTTACTACAGGAATCAGAAAC 58.523 41.667 0.00 0.00 0.00 2.78
91 92 5.733620 ACCGTTACTACAGGAATCAGAAA 57.266 39.130 0.00 0.00 0.00 2.52
92 93 6.209192 TGTTACCGTTACTACAGGAATCAGAA 59.791 38.462 0.00 0.00 0.00 3.02
93 94 5.711506 TGTTACCGTTACTACAGGAATCAGA 59.288 40.000 0.00 0.00 0.00 3.27
94 95 5.957798 TGTTACCGTTACTACAGGAATCAG 58.042 41.667 0.00 0.00 0.00 2.90
95 96 5.477984 ACTGTTACCGTTACTACAGGAATCA 59.522 40.000 0.00 0.00 41.69 2.57
96 97 5.958955 ACTGTTACCGTTACTACAGGAATC 58.041 41.667 0.00 0.00 41.69 2.52
97 98 5.990120 ACTGTTACCGTTACTACAGGAAT 57.010 39.130 0.00 0.00 41.69 3.01
98 99 5.789643 AACTGTTACCGTTACTACAGGAA 57.210 39.130 0.00 0.00 41.69 3.36
99 100 6.254281 GTAACTGTTACCGTTACTACAGGA 57.746 41.667 17.78 0.00 41.99 3.86
118 119 8.947115 AGCCAAAATAGATTTACAGTCAGTAAC 58.053 33.333 0.00 0.00 42.19 2.50
165 166 4.141482 ACAGTAGTTGGAACCACTGACAAT 60.141 41.667 20.41 0.55 46.90 2.71
227 228 3.631453 GCATCGGCAATGGGATCTA 57.369 52.632 0.00 0.00 40.72 1.98
250 251 0.539051 ACTCTCGAGATTGGCCAAGG 59.461 55.000 24.94 12.75 0.00 3.61
252 253 0.250234 CCACTCTCGAGATTGGCCAA 59.750 55.000 31.51 23.00 37.92 4.52
279 280 6.771749 TCGGGAAAGGAAGTTGTTAACATTTA 59.228 34.615 9.56 0.00 0.00 1.40
283 284 4.153673 TCGGGAAAGGAAGTTGTTAACA 57.846 40.909 3.59 3.59 0.00 2.41
324 325 7.334171 GCAACCTTTTAAGTATGATGGCAAAAT 59.666 33.333 0.00 0.00 0.00 1.82
338 339 6.452350 CGCAAAATATCGTGCAACCTTTTAAG 60.452 38.462 10.28 0.00 40.94 1.85
341 342 3.672867 CGCAAAATATCGTGCAACCTTTT 59.327 39.130 10.28 0.00 40.94 2.27
363 364 6.487299 AATAATGTTGGAGAGTCTAGTCCC 57.513 41.667 0.00 0.00 31.04 4.46
405 408 3.004106 GGCCAACATTGAGAGTATCATGC 59.996 47.826 0.00 0.00 37.89 4.06
424 427 0.681175 ACAGGCTTGATTTTGTGGCC 59.319 50.000 1.40 0.00 42.74 5.36
493 496 2.294074 GTGTGTGTGTGCCCTTAGAAA 58.706 47.619 0.00 0.00 0.00 2.52
512 515 3.812609 TGAATACACTTTGCATCGTGTGT 59.187 39.130 23.85 19.46 43.59 3.72
513 516 4.403015 TGAATACACTTTGCATCGTGTG 57.597 40.909 23.85 15.80 43.59 3.82
514 517 4.515191 ACTTGAATACACTTTGCATCGTGT 59.485 37.500 20.70 20.70 45.49 4.49
515 518 4.847757 CACTTGAATACACTTTGCATCGTG 59.152 41.667 12.70 12.70 37.18 4.35
516 519 4.754618 TCACTTGAATACACTTTGCATCGT 59.245 37.500 0.00 0.00 0.00 3.73
599 603 6.313519 TGAAGCATATGTAGAGGGACTTTT 57.686 37.500 4.29 0.00 41.55 2.27
603 607 4.284490 TCCATGAAGCATATGTAGAGGGAC 59.716 45.833 4.29 0.00 0.00 4.46
642 646 5.106038 ACACAAATGTTCATATGAGTGCCTG 60.106 40.000 16.33 10.77 34.46 4.85
679 683 6.869695 TCGTGTATGTTAGAGAAAATGCCTA 58.130 36.000 0.00 0.00 0.00 3.93
689 693 6.206600 ACAAAACGTTCGTGTATGTTAGAG 57.793 37.500 14.11 0.00 0.00 2.43
690 694 7.872163 ATACAAAACGTTCGTGTATGTTAGA 57.128 32.000 25.32 9.20 37.14 2.10
693 697 9.138062 TGTATATACAAAACGTTCGTGTATGTT 57.862 29.630 29.75 23.08 38.56 2.71
694 698 8.586273 GTGTATATACAAAACGTTCGTGTATGT 58.414 33.333 29.75 27.08 38.56 2.29
695 699 7.779812 CGTGTATATACAAAACGTTCGTGTATG 59.220 37.037 29.75 17.60 38.56 2.39
696 700 7.513505 GCGTGTATATACAAAACGTTCGTGTAT 60.514 37.037 27.28 27.28 40.60 2.29
697 701 6.237175 GCGTGTATATACAAAACGTTCGTGTA 60.237 38.462 17.07 20.67 38.04 2.90
698 702 5.443170 GCGTGTATATACAAAACGTTCGTGT 60.443 40.000 17.07 18.29 38.04 4.49
699 703 4.945597 GCGTGTATATACAAAACGTTCGTG 59.054 41.667 17.07 5.79 38.04 4.35
700 704 4.620609 TGCGTGTATATACAAAACGTTCGT 59.379 37.500 17.07 4.80 38.04 3.85
701 705 5.116055 TGCGTGTATATACAAAACGTTCG 57.884 39.130 17.07 14.55 38.04 3.95
702 706 4.953814 GCTGCGTGTATATACAAAACGTTC 59.046 41.667 17.07 6.20 38.04 3.95
703 707 4.389382 TGCTGCGTGTATATACAAAACGTT 59.611 37.500 17.07 0.00 38.04 3.99
704 708 3.927758 TGCTGCGTGTATATACAAAACGT 59.072 39.130 17.07 0.00 38.04 3.99
705 709 4.260670 GTGCTGCGTGTATATACAAAACG 58.739 43.478 17.07 16.49 38.04 3.60
706 710 4.260670 CGTGCTGCGTGTATATACAAAAC 58.739 43.478 17.07 9.99 38.04 2.43
707 711 3.242155 GCGTGCTGCGTGTATATACAAAA 60.242 43.478 17.07 5.37 43.66 2.44
708 712 2.283086 GCGTGCTGCGTGTATATACAAA 59.717 45.455 17.07 5.70 43.66 2.83
709 713 1.855978 GCGTGCTGCGTGTATATACAA 59.144 47.619 17.07 1.51 43.66 2.41
710 714 1.483316 GCGTGCTGCGTGTATATACA 58.517 50.000 11.62 11.62 43.66 2.29
722 726 3.730761 GAACCTGGCTGCGTGCTG 61.731 66.667 0.00 0.00 42.39 4.41
725 729 2.743928 GAGGAACCTGGCTGCGTG 60.744 66.667 0.00 0.00 0.00 5.34
726 730 4.021925 GGAGGAACCTGGCTGCGT 62.022 66.667 0.00 0.00 35.41 5.24
727 731 4.785453 GGGAGGAACCTGGCTGCG 62.785 72.222 0.00 0.00 38.98 5.18
728 732 4.785453 CGGGAGGAACCTGGCTGC 62.785 72.222 0.00 0.00 41.14 5.25
729 733 2.527951 CTTCGGGAGGAACCTGGCTG 62.528 65.000 0.00 0.00 44.73 4.85
730 734 2.203938 TTCGGGAGGAACCTGGCT 60.204 61.111 0.00 0.00 44.73 4.75
731 735 2.245438 CTCTTCGGGAGGAACCTGGC 62.245 65.000 0.00 0.00 44.73 4.85
732 736 1.901085 CTCTTCGGGAGGAACCTGG 59.099 63.158 0.00 0.00 44.73 4.45
743 747 0.669077 CACGATACTCCCCTCTTCGG 59.331 60.000 0.00 0.00 34.28 4.30
744 748 1.065701 CACACGATACTCCCCTCTTCG 59.934 57.143 0.00 0.00 35.99 3.79
745 749 1.409427 CCACACGATACTCCCCTCTTC 59.591 57.143 0.00 0.00 0.00 2.87
746 750 1.486211 CCACACGATACTCCCCTCTT 58.514 55.000 0.00 0.00 0.00 2.85
747 751 1.043673 GCCACACGATACTCCCCTCT 61.044 60.000 0.00 0.00 0.00 3.69
748 752 1.043673 AGCCACACGATACTCCCCTC 61.044 60.000 0.00 0.00 0.00 4.30
749 753 1.001760 AGCCACACGATACTCCCCT 59.998 57.895 0.00 0.00 0.00 4.79
750 754 1.144057 CAGCCACACGATACTCCCC 59.856 63.158 0.00 0.00 0.00 4.81
751 755 1.521681 GCAGCCACACGATACTCCC 60.522 63.158 0.00 0.00 0.00 4.30
752 756 1.878522 CGCAGCCACACGATACTCC 60.879 63.158 0.00 0.00 0.00 3.85
753 757 1.153823 ACGCAGCCACACGATACTC 60.154 57.895 0.00 0.00 0.00 2.59
754 758 1.446099 CACGCAGCCACACGATACT 60.446 57.895 0.00 0.00 0.00 2.12
755 759 3.081133 CACGCAGCCACACGATAC 58.919 61.111 0.00 0.00 0.00 2.24
756 760 2.813474 GCACGCAGCCACACGATA 60.813 61.111 0.00 0.00 37.23 2.92
765 769 3.479269 GTCGTACCAGCACGCAGC 61.479 66.667 0.00 0.00 41.67 5.25
766 770 2.809601 GGTCGTACCAGCACGCAG 60.810 66.667 0.00 0.00 41.67 5.18
767 771 4.710695 CGGTCGTACCAGCACGCA 62.711 66.667 5.15 0.00 41.67 5.24
773 777 3.242897 TTTGGGCCGGTCGTACCAG 62.243 63.158 1.90 0.00 38.47 4.00
774 778 3.240011 TTTGGGCCGGTCGTACCA 61.240 61.111 1.90 1.26 38.47 3.25
775 779 2.435410 CTTTGGGCCGGTCGTACC 60.435 66.667 1.90 0.00 34.05 3.34
776 780 1.301953 AACTTTGGGCCGGTCGTAC 60.302 57.895 1.90 0.00 0.00 3.67
777 781 1.301874 CAACTTTGGGCCGGTCGTA 60.302 57.895 1.90 0.00 0.00 3.43
778 782 2.593436 CAACTTTGGGCCGGTCGT 60.593 61.111 1.90 0.00 0.00 4.34
779 783 3.361977 CCAACTTTGGGCCGGTCG 61.362 66.667 1.90 0.00 44.70 4.79
803 807 3.885521 ACTACTACGAGCGGGCGC 61.886 66.667 0.00 0.00 42.33 6.53
804 808 2.024305 CACTACTACGAGCGGGCG 59.976 66.667 0.00 0.00 37.29 6.13
805 809 1.063811 GACACTACTACGAGCGGGC 59.936 63.158 0.00 0.00 0.00 6.13
806 810 1.093159 AAGACACTACTACGAGCGGG 58.907 55.000 0.00 0.00 0.00 6.13
807 811 2.915738 AAAGACACTACTACGAGCGG 57.084 50.000 0.00 0.00 0.00 5.52
808 812 3.364023 CCAAAAAGACACTACTACGAGCG 59.636 47.826 0.00 0.00 0.00 5.03
809 813 4.553323 TCCAAAAAGACACTACTACGAGC 58.447 43.478 0.00 0.00 0.00 5.03
810 814 5.634020 CCTTCCAAAAAGACACTACTACGAG 59.366 44.000 0.00 0.00 0.00 4.18
811 815 5.302568 TCCTTCCAAAAAGACACTACTACGA 59.697 40.000 0.00 0.00 0.00 3.43
812 816 5.535333 TCCTTCCAAAAAGACACTACTACG 58.465 41.667 0.00 0.00 0.00 3.51
813 817 7.797038 TTTCCTTCCAAAAAGACACTACTAC 57.203 36.000 0.00 0.00 0.00 2.73
814 818 8.810990 TTTTTCCTTCCAAAAAGACACTACTA 57.189 30.769 0.00 0.00 31.65 1.82
815 819 7.712204 TTTTTCCTTCCAAAAAGACACTACT 57.288 32.000 0.00 0.00 31.65 2.57
843 847 6.671614 TTAGTTTCTCTCAGCGAACAAAAA 57.328 33.333 0.00 0.00 0.00 1.94
855 859 8.245491 AGTTTCTCCGAGTTATTAGTTTCTCTC 58.755 37.037 0.00 0.00 0.00 3.20
864 868 4.096984 GGGTCGAGTTTCTCCGAGTTATTA 59.903 45.833 0.00 0.00 35.31 0.98
873 877 1.079057 GGCAGGGTCGAGTTTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
951 955 0.846427 AGATTGGCTTGGGGTCTCCA 60.846 55.000 0.00 0.00 45.43 3.86
952 956 0.106967 GAGATTGGCTTGGGGTCTCC 60.107 60.000 0.00 0.00 31.41 3.71
953 957 0.106967 GGAGATTGGCTTGGGGTCTC 60.107 60.000 0.00 0.00 35.68 3.36
954 958 1.915078 CGGAGATTGGCTTGGGGTCT 61.915 60.000 0.00 0.00 0.00 3.85
955 959 1.452108 CGGAGATTGGCTTGGGGTC 60.452 63.158 0.00 0.00 0.00 4.46
956 960 2.677228 CGGAGATTGGCTTGGGGT 59.323 61.111 0.00 0.00 0.00 4.95
957 961 2.830370 GCGGAGATTGGCTTGGGG 60.830 66.667 0.00 0.00 0.00 4.96
958 962 2.830370 GGCGGAGATTGGCTTGGG 60.830 66.667 0.00 0.00 0.00 4.12
959 963 1.821332 GAGGCGGAGATTGGCTTGG 60.821 63.158 0.00 0.00 42.99 3.61
960 964 1.821332 GGAGGCGGAGATTGGCTTG 60.821 63.158 0.00 0.00 42.99 4.01
961 965 2.592308 GGAGGCGGAGATTGGCTT 59.408 61.111 0.00 0.00 42.99 4.35
962 966 3.483869 GGGAGGCGGAGATTGGCT 61.484 66.667 0.00 0.00 45.97 4.75
963 967 4.570874 GGGGAGGCGGAGATTGGC 62.571 72.222 0.00 0.00 0.00 4.52
964 968 2.965226 TAGGGGGAGGCGGAGATTGG 62.965 65.000 0.00 0.00 0.00 3.16
965 969 1.054406 TTAGGGGGAGGCGGAGATTG 61.054 60.000 0.00 0.00 0.00 2.67
966 970 0.327191 TTTAGGGGGAGGCGGAGATT 60.327 55.000 0.00 0.00 0.00 2.40
967 971 1.054978 GTTTAGGGGGAGGCGGAGAT 61.055 60.000 0.00 0.00 0.00 2.75
968 972 1.688187 GTTTAGGGGGAGGCGGAGA 60.688 63.158 0.00 0.00 0.00 3.71
969 973 2.743179 GGTTTAGGGGGAGGCGGAG 61.743 68.421 0.00 0.00 0.00 4.63
1281 1291 0.171231 TCTCCGAGTCAACATCGCTG 59.829 55.000 0.00 0.00 38.84 5.18
1339 1349 0.320374 TTCCCACTCGAGCGATTGTT 59.680 50.000 13.61 0.00 0.00 2.83
1381 1391 3.122971 GTGTTTACCGGAGCCGCC 61.123 66.667 9.46 0.00 38.24 6.13
1421 1431 3.680620 TTCTCATCGCCGGCCTTGG 62.681 63.158 23.46 6.82 0.00 3.61
1533 1543 1.226323 GACCTGGACATCGACGTCG 60.226 63.158 31.30 31.30 36.73 5.12
1534 1544 0.242825 TTGACCTGGACATCGACGTC 59.757 55.000 2.32 2.32 35.03 4.34
1696 1718 3.385384 CCTCGAGTGCCTGCTCCA 61.385 66.667 12.31 0.00 32.11 3.86
1828 1850 4.379243 CACGAGGCGCCTGAGGTT 62.379 66.667 38.41 9.08 0.00 3.50
1887 1909 1.078214 TGAAGGAGGCATGGCGAAG 60.078 57.895 14.30 0.00 0.00 3.79
1917 1939 4.142902 CGACCAAATTGTTGCTACTCGATT 60.143 41.667 0.00 0.00 33.01 3.34
1969 1995 2.553602 TGTGCAGCGAAGTCAATCAAAT 59.446 40.909 0.00 0.00 0.00 2.32
1996 2022 7.972832 AGACTTTACAGATACTACGTTTAAGGC 59.027 37.037 0.00 0.00 0.00 4.35
2090 2132 4.701956 AGCTATGTTATGCACCAAACAC 57.298 40.909 11.93 2.60 38.35 3.32
2099 2141 3.306166 ACGAACGTGAAGCTATGTTATGC 59.694 43.478 0.00 0.00 30.32 3.14
2103 2145 2.478894 CCAACGAACGTGAAGCTATGTT 59.521 45.455 0.00 0.00 32.72 2.71
2104 2146 2.066262 CCAACGAACGTGAAGCTATGT 58.934 47.619 0.00 0.00 0.00 2.29
2105 2147 2.066262 ACCAACGAACGTGAAGCTATG 58.934 47.619 0.00 0.00 0.00 2.23
2111 2153 0.727970 CACCAACCAACGAACGTGAA 59.272 50.000 0.00 0.00 0.00 3.18
2142 2187 5.308014 CATGTACTGAAGGCCAAGCATATA 58.692 41.667 5.01 0.00 0.00 0.86
2143 2188 3.931907 TGTACTGAAGGCCAAGCATAT 57.068 42.857 5.01 0.00 0.00 1.78
2241 2287 5.977635 ACAGGAATCGAGTGATGAATGTAA 58.022 37.500 0.00 0.00 34.24 2.41
2242 2288 5.127031 TGACAGGAATCGAGTGATGAATGTA 59.873 40.000 0.00 0.00 34.24 2.29
2315 2369 1.208614 GCGGCTTTCTTCAGTGCAG 59.791 57.895 0.00 0.00 0.00 4.41
2331 2385 4.920376 ACATATTTCCGATCCTTTTTGCG 58.080 39.130 0.00 0.00 0.00 4.85
2332 2386 5.519927 CCAACATATTTCCGATCCTTTTTGC 59.480 40.000 0.00 0.00 0.00 3.68
2384 2438 7.151308 ACAGATGTAAGAAACAGAAGACTCAG 58.849 38.462 0.00 0.00 42.70 3.35
2405 2459 5.957771 ATAGAAGCCCAAATACAGACAGA 57.042 39.130 0.00 0.00 0.00 3.41
2406 2460 7.500992 TCTAATAGAAGCCCAAATACAGACAG 58.499 38.462 0.00 0.00 0.00 3.51
2431 3688 2.148446 ATGCCACCATTGTACATGCT 57.852 45.000 0.00 0.00 0.00 3.79
2432 3689 3.569277 TCATATGCCACCATTGTACATGC 59.431 43.478 0.00 0.00 32.85 4.06
2433 3690 5.771153 TTCATATGCCACCATTGTACATG 57.229 39.130 0.00 0.00 32.85 3.21
2434 3691 6.335471 CATTCATATGCCACCATTGTACAT 57.665 37.500 0.00 0.00 32.85 2.29
2435 3692 5.771153 CATTCATATGCCACCATTGTACA 57.229 39.130 0.00 0.00 32.85 2.90
2448 3705 8.549338 AGTTATGAGACATCTGCATTCATATG 57.451 34.615 0.00 0.00 32.56 1.78
2451 3708 8.969260 TTTAGTTATGAGACATCTGCATTCAT 57.031 30.769 0.00 0.00 33.44 2.57
2452 3709 8.791327 TTTTAGTTATGAGACATCTGCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
2453 3710 8.887717 ACTTTTAGTTATGAGACATCTGCATTC 58.112 33.333 0.00 0.00 0.00 2.67
2454 3711 8.798859 ACTTTTAGTTATGAGACATCTGCATT 57.201 30.769 0.00 0.00 0.00 3.56
2455 3712 9.539825 CTACTTTTAGTTATGAGACATCTGCAT 57.460 33.333 0.00 0.00 0.00 3.96
2456 3713 8.531982 ACTACTTTTAGTTATGAGACATCTGCA 58.468 33.333 0.00 0.00 34.66 4.41
2457 3714 8.934507 ACTACTTTTAGTTATGAGACATCTGC 57.065 34.615 0.00 0.00 34.66 4.26
2462 3719 9.706691 CTCCAAACTACTTTTAGTTATGAGACA 57.293 33.333 13.14 0.00 46.10 3.41
2463 3720 9.708092 ACTCCAAACTACTTTTAGTTATGAGAC 57.292 33.333 19.75 0.00 46.10 3.36
2508 3765 1.202989 TGTTAGCTTGCATTGGGGACA 60.203 47.619 0.00 0.00 39.83 4.02
2509 3766 1.544724 TGTTAGCTTGCATTGGGGAC 58.455 50.000 0.00 0.00 0.00 4.46
2510 3767 2.300956 TTGTTAGCTTGCATTGGGGA 57.699 45.000 0.00 0.00 0.00 4.81
2511 3768 3.491447 GCTATTGTTAGCTTGCATTGGGG 60.491 47.826 0.00 0.00 46.13 4.96
2512 3769 3.709987 GCTATTGTTAGCTTGCATTGGG 58.290 45.455 0.00 0.00 46.13 4.12
2522 3779 1.222115 CGAGGCCCGCTATTGTTAGC 61.222 60.000 0.00 0.00 46.16 3.09
2523 3780 0.104304 ACGAGGCCCGCTATTGTTAG 59.896 55.000 12.78 0.00 43.32 2.34
2524 3781 0.538118 AACGAGGCCCGCTATTGTTA 59.462 50.000 12.78 0.00 43.32 2.41
2525 3782 0.538118 TAACGAGGCCCGCTATTGTT 59.462 50.000 12.78 6.66 43.32 2.83
2526 3783 0.538118 TTAACGAGGCCCGCTATTGT 59.462 50.000 12.78 0.00 43.32 2.71
2527 3784 1.202486 TCTTAACGAGGCCCGCTATTG 60.202 52.381 12.78 0.00 43.32 1.90
2528 3785 1.068741 CTCTTAACGAGGCCCGCTATT 59.931 52.381 12.78 3.95 43.32 1.73
2529 3786 0.674534 CTCTTAACGAGGCCCGCTAT 59.325 55.000 12.78 3.65 43.32 2.97
2530 3787 0.394762 TCTCTTAACGAGGCCCGCTA 60.395 55.000 12.78 3.45 43.32 4.26
2531 3788 1.043673 ATCTCTTAACGAGGCCCGCT 61.044 55.000 12.78 4.39 43.32 5.52
2532 3789 0.672342 TATCTCTTAACGAGGCCCGC 59.328 55.000 12.78 0.00 43.32 6.13
2533 3790 2.228059 TCTATCTCTTAACGAGGCCCG 58.772 52.381 11.48 11.48 40.30 6.13
2534 3791 4.667519 TTTCTATCTCTTAACGAGGCCC 57.332 45.455 0.00 0.00 40.30 5.80
2535 3792 8.658499 TTTATTTTCTATCTCTTAACGAGGCC 57.342 34.615 0.00 0.00 40.30 5.19
2536 3793 9.530633 TCTTTATTTTCTATCTCTTAACGAGGC 57.469 33.333 0.00 0.00 40.30 4.70
2551 3808 9.372369 GCATGTGTACTAGAGTCTTTATTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
2552 3809 9.151471 TGCATGTGTACTAGAGTCTTTATTTTC 57.849 33.333 0.00 0.00 0.00 2.29
2553 3810 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
2554 3811 9.319143 GATGCATGTGTACTAGAGTCTTTATTT 57.681 33.333 2.46 0.00 0.00 1.40
2555 3812 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
2556 3813 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
2557 3814 7.646548 AGATGCATGTGTACTAGAGTCTTTA 57.353 36.000 2.46 0.00 0.00 1.85
2558 3815 6.537453 AGATGCATGTGTACTAGAGTCTTT 57.463 37.500 2.46 0.00 0.00 2.52
2559 3816 6.537453 AAGATGCATGTGTACTAGAGTCTT 57.463 37.500 2.46 0.00 0.00 3.01
2560 3817 6.537453 AAAGATGCATGTGTACTAGAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
2561 3818 8.879342 AATAAAGATGCATGTGTACTAGAGTC 57.121 34.615 2.46 0.00 0.00 3.36
2562 3819 9.672673 AAAATAAAGATGCATGTGTACTAGAGT 57.327 29.630 2.46 0.00 0.00 3.24
2567 3824 8.796475 AGTGAAAAATAAAGATGCATGTGTACT 58.204 29.630 2.46 0.00 0.00 2.73
2568 3825 8.853345 CAGTGAAAAATAAAGATGCATGTGTAC 58.147 33.333 2.46 0.00 0.00 2.90
2569 3826 7.541783 GCAGTGAAAAATAAAGATGCATGTGTA 59.458 33.333 2.46 0.00 32.79 2.90
2570 3827 6.366877 GCAGTGAAAAATAAAGATGCATGTGT 59.633 34.615 2.46 0.00 32.79 3.72
2571 3828 6.366604 TGCAGTGAAAAATAAAGATGCATGTG 59.633 34.615 2.46 0.00 37.50 3.21
2572 3829 6.366877 GTGCAGTGAAAAATAAAGATGCATGT 59.633 34.615 2.46 0.00 43.50 3.21
2573 3830 6.366604 TGTGCAGTGAAAAATAAAGATGCATG 59.633 34.615 2.46 0.00 43.50 4.06
2574 3831 6.366877 GTGTGCAGTGAAAAATAAAGATGCAT 59.633 34.615 0.00 0.00 43.50 3.96
2575 3832 5.691305 GTGTGCAGTGAAAAATAAAGATGCA 59.309 36.000 0.00 0.00 39.89 3.96
2576 3833 5.922544 AGTGTGCAGTGAAAAATAAAGATGC 59.077 36.000 0.00 0.00 0.00 3.91
2577 3834 6.364165 CCAGTGTGCAGTGAAAAATAAAGATG 59.636 38.462 8.46 0.00 33.67 2.90
2578 3835 6.265196 TCCAGTGTGCAGTGAAAAATAAAGAT 59.735 34.615 8.46 0.00 33.67 2.40
2579 3836 5.592282 TCCAGTGTGCAGTGAAAAATAAAGA 59.408 36.000 8.46 0.00 33.67 2.52
2580 3837 5.687285 GTCCAGTGTGCAGTGAAAAATAAAG 59.313 40.000 8.46 0.00 33.67 1.85
2581 3838 5.451242 GGTCCAGTGTGCAGTGAAAAATAAA 60.451 40.000 8.46 0.00 33.67 1.40
2582 3839 4.037446 GGTCCAGTGTGCAGTGAAAAATAA 59.963 41.667 8.46 0.00 33.67 1.40
2583 3840 3.568007 GGTCCAGTGTGCAGTGAAAAATA 59.432 43.478 8.46 0.00 33.67 1.40
2584 3841 2.362077 GGTCCAGTGTGCAGTGAAAAAT 59.638 45.455 8.46 0.00 33.67 1.82
2585 3842 1.748493 GGTCCAGTGTGCAGTGAAAAA 59.252 47.619 8.46 0.00 33.67 1.94
2586 3843 1.340502 TGGTCCAGTGTGCAGTGAAAA 60.341 47.619 8.46 0.00 33.67 2.29
2587 3844 0.254462 TGGTCCAGTGTGCAGTGAAA 59.746 50.000 8.46 0.00 33.67 2.69
2588 3845 0.463654 GTGGTCCAGTGTGCAGTGAA 60.464 55.000 8.46 0.00 33.67 3.18
2589 3846 1.146041 GTGGTCCAGTGTGCAGTGA 59.854 57.895 8.46 0.00 33.67 3.41
2590 3847 1.153188 TGTGGTCCAGTGTGCAGTG 60.153 57.895 0.00 0.26 0.00 3.66
2591 3848 1.153168 GTGTGGTCCAGTGTGCAGT 60.153 57.895 0.00 0.00 0.00 4.40
2592 3849 0.464373 AAGTGTGGTCCAGTGTGCAG 60.464 55.000 0.00 0.00 0.00 4.41
2593 3850 0.034574 AAAGTGTGGTCCAGTGTGCA 60.035 50.000 0.00 0.00 0.00 4.57
2594 3851 1.961793 TAAAGTGTGGTCCAGTGTGC 58.038 50.000 0.00 0.00 0.00 4.57
2595 3852 3.997021 GAGATAAAGTGTGGTCCAGTGTG 59.003 47.826 0.00 0.00 0.00 3.82
2596 3853 3.904339 AGAGATAAAGTGTGGTCCAGTGT 59.096 43.478 0.00 0.00 0.00 3.55
2597 3854 4.499183 GAGAGATAAAGTGTGGTCCAGTG 58.501 47.826 0.00 0.00 0.00 3.66
2598 3855 3.515901 GGAGAGATAAAGTGTGGTCCAGT 59.484 47.826 0.00 0.00 0.00 4.00
2599 3856 3.515502 TGGAGAGATAAAGTGTGGTCCAG 59.484 47.826 0.00 0.00 0.00 3.86
2600 3857 3.516586 TGGAGAGATAAAGTGTGGTCCA 58.483 45.455 0.00 0.00 0.00 4.02
2601 3858 4.508662 CTTGGAGAGATAAAGTGTGGTCC 58.491 47.826 0.00 0.00 0.00 4.46
2602 3859 3.935828 GCTTGGAGAGATAAAGTGTGGTC 59.064 47.826 0.00 0.00 0.00 4.02
2603 3860 3.327757 TGCTTGGAGAGATAAAGTGTGGT 59.672 43.478 0.00 0.00 0.00 4.16
2604 3861 3.686726 GTGCTTGGAGAGATAAAGTGTGG 59.313 47.826 0.00 0.00 0.00 4.17
2605 3862 3.686726 GGTGCTTGGAGAGATAAAGTGTG 59.313 47.826 0.00 0.00 0.00 3.82
2606 3863 3.307762 GGGTGCTTGGAGAGATAAAGTGT 60.308 47.826 0.00 0.00 0.00 3.55
2607 3864 3.274288 GGGTGCTTGGAGAGATAAAGTG 58.726 50.000 0.00 0.00 0.00 3.16
2608 3865 2.093447 CGGGTGCTTGGAGAGATAAAGT 60.093 50.000 0.00 0.00 0.00 2.66
2609 3866 2.555199 CGGGTGCTTGGAGAGATAAAG 58.445 52.381 0.00 0.00 0.00 1.85
2610 3867 1.406887 GCGGGTGCTTGGAGAGATAAA 60.407 52.381 0.00 0.00 38.39 1.40
2611 3868 0.178068 GCGGGTGCTTGGAGAGATAA 59.822 55.000 0.00 0.00 38.39 1.75
2612 3869 1.686325 GGCGGGTGCTTGGAGAGATA 61.686 60.000 0.00 0.00 42.25 1.98
2613 3870 2.586792 GCGGGTGCTTGGAGAGAT 59.413 61.111 0.00 0.00 38.39 2.75
2614 3871 3.706373 GGCGGGTGCTTGGAGAGA 61.706 66.667 0.00 0.00 42.25 3.10
2615 3872 3.672295 GAGGCGGGTGCTTGGAGAG 62.672 68.421 0.00 0.00 42.25 3.20
2616 3873 3.706373 GAGGCGGGTGCTTGGAGA 61.706 66.667 0.00 0.00 42.25 3.71
2617 3874 4.785453 GGAGGCGGGTGCTTGGAG 62.785 72.222 0.00 0.00 42.25 3.86
2629 3886 0.813210 CGGAATTCTCTGCAGGAGGC 60.813 60.000 15.13 3.72 42.10 4.70
2630 3887 3.376218 CGGAATTCTCTGCAGGAGG 57.624 57.895 15.13 4.92 42.10 4.30
2637 3894 3.556004 GGATAGGGAAGCGGAATTCTCTG 60.556 52.174 5.23 0.00 40.30 3.35
2638 3895 2.635427 GGATAGGGAAGCGGAATTCTCT 59.365 50.000 5.23 0.26 42.68 3.10
2639 3896 2.610727 CGGATAGGGAAGCGGAATTCTC 60.611 54.545 5.23 0.00 0.00 2.87
2640 3897 1.344763 CGGATAGGGAAGCGGAATTCT 59.655 52.381 5.23 0.00 0.00 2.40
2641 3898 1.343465 TCGGATAGGGAAGCGGAATTC 59.657 52.381 0.00 0.00 0.00 2.17
2642 3899 1.420430 TCGGATAGGGAAGCGGAATT 58.580 50.000 0.00 0.00 0.00 2.17
2643 3900 1.070289 GTTCGGATAGGGAAGCGGAAT 59.930 52.381 0.00 0.00 0.00 3.01
2644 3901 0.462789 GTTCGGATAGGGAAGCGGAA 59.537 55.000 0.00 0.00 0.00 4.30
2645 3902 1.397390 GGTTCGGATAGGGAAGCGGA 61.397 60.000 0.00 0.00 32.96 5.54
2646 3903 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
2647 3904 1.325355 TAGGTTCGGATAGGGAAGCG 58.675 55.000 0.00 0.00 44.35 4.68
2648 3905 4.353383 AAATAGGTTCGGATAGGGAAGC 57.647 45.455 0.00 0.00 41.06 3.86
2649 3906 7.908453 AGATAAAATAGGTTCGGATAGGGAAG 58.092 38.462 0.00 0.00 0.00 3.46
2650 3907 7.867160 AGATAAAATAGGTTCGGATAGGGAA 57.133 36.000 0.00 0.00 0.00 3.97
2651 3908 8.961293 TTAGATAAAATAGGTTCGGATAGGGA 57.039 34.615 0.00 0.00 0.00 4.20
2657 3914 9.246670 TCGGATATTAGATAAAATAGGTTCGGA 57.753 33.333 0.00 0.00 0.00 4.55
2668 3925 8.421784 GCCATGTAGGATCGGATATTAGATAAA 58.578 37.037 0.00 0.00 41.22 1.40
2669 3926 7.563556 TGCCATGTAGGATCGGATATTAGATAA 59.436 37.037 0.00 0.00 41.22 1.75
2670 3927 7.066781 TGCCATGTAGGATCGGATATTAGATA 58.933 38.462 0.00 0.00 41.22 1.98
2671 3928 5.899547 TGCCATGTAGGATCGGATATTAGAT 59.100 40.000 0.00 0.00 41.22 1.98
2672 3929 5.269189 TGCCATGTAGGATCGGATATTAGA 58.731 41.667 0.00 0.00 41.22 2.10
2673 3930 5.598416 TGCCATGTAGGATCGGATATTAG 57.402 43.478 0.00 0.00 41.22 1.73
2674 3931 6.238925 CGTATGCCATGTAGGATCGGATATTA 60.239 42.308 0.00 0.00 41.22 0.98
2675 3932 5.451937 CGTATGCCATGTAGGATCGGATATT 60.452 44.000 0.00 0.00 41.22 1.28
2676 3933 4.038042 CGTATGCCATGTAGGATCGGATAT 59.962 45.833 0.00 0.00 41.22 1.63
2677 3934 3.380320 CGTATGCCATGTAGGATCGGATA 59.620 47.826 0.00 0.00 41.22 2.59
2678 3935 2.166459 CGTATGCCATGTAGGATCGGAT 59.834 50.000 0.00 0.00 41.22 4.18
2679 3936 1.544246 CGTATGCCATGTAGGATCGGA 59.456 52.381 0.00 0.00 41.22 4.55
2680 3937 1.544246 TCGTATGCCATGTAGGATCGG 59.456 52.381 0.00 0.00 41.22 4.18
2681 3938 2.416027 CCTCGTATGCCATGTAGGATCG 60.416 54.545 0.00 0.00 41.22 3.69
2682 3939 2.675317 GCCTCGTATGCCATGTAGGATC 60.675 54.545 6.11 0.00 41.22 3.36
2683 3940 1.276421 GCCTCGTATGCCATGTAGGAT 59.724 52.381 6.11 0.00 41.22 3.24
2684 3941 0.679505 GCCTCGTATGCCATGTAGGA 59.320 55.000 6.11 0.00 41.22 2.94
2685 3942 0.392706 TGCCTCGTATGCCATGTAGG 59.607 55.000 0.00 0.00 41.84 3.18
2686 3943 2.289010 TGATGCCTCGTATGCCATGTAG 60.289 50.000 0.00 0.00 0.00 2.74
2687 3944 1.691434 TGATGCCTCGTATGCCATGTA 59.309 47.619 0.00 0.00 0.00 2.29
2688 3945 0.469494 TGATGCCTCGTATGCCATGT 59.531 50.000 0.00 0.00 0.00 3.21
2689 3946 0.870393 GTGATGCCTCGTATGCCATG 59.130 55.000 0.00 0.00 0.00 3.66
2690 3947 0.250467 GGTGATGCCTCGTATGCCAT 60.250 55.000 0.00 0.00 0.00 4.40
2691 3948 1.146041 GGTGATGCCTCGTATGCCA 59.854 57.895 0.00 0.00 0.00 4.92
2692 3949 1.598130 GGGTGATGCCTCGTATGCC 60.598 63.158 0.00 0.00 37.43 4.40
2693 3950 0.882042 CAGGGTGATGCCTCGTATGC 60.882 60.000 0.00 0.00 37.43 3.14
2694 3951 0.752658 TCAGGGTGATGCCTCGTATG 59.247 55.000 0.00 0.00 37.43 2.39
2695 3952 1.043816 CTCAGGGTGATGCCTCGTAT 58.956 55.000 0.00 0.00 37.43 3.06
2696 3953 0.033503 TCTCAGGGTGATGCCTCGTA 60.034 55.000 0.00 0.00 37.43 3.43
2697 3954 1.305297 TCTCAGGGTGATGCCTCGT 60.305 57.895 0.00 0.00 37.43 4.18
2698 3955 1.142748 GTCTCAGGGTGATGCCTCG 59.857 63.158 0.00 0.00 37.43 4.63
2699 3956 1.781786 TAGTCTCAGGGTGATGCCTC 58.218 55.000 0.00 0.00 37.43 4.70
2700 3957 2.045524 CATAGTCTCAGGGTGATGCCT 58.954 52.381 0.00 0.00 37.43 4.75
2701 3958 1.542108 GCATAGTCTCAGGGTGATGCC 60.542 57.143 0.00 0.00 34.88 4.40
2702 3959 1.139654 TGCATAGTCTCAGGGTGATGC 59.860 52.381 0.00 0.00 40.04 3.91
2703 3960 3.766068 ATGCATAGTCTCAGGGTGATG 57.234 47.619 0.00 0.00 0.00 3.07
2704 3961 3.457380 ACAATGCATAGTCTCAGGGTGAT 59.543 43.478 0.00 0.00 0.00 3.06
2705 3962 2.840038 ACAATGCATAGTCTCAGGGTGA 59.160 45.455 0.00 0.00 0.00 4.02
2706 3963 3.272574 ACAATGCATAGTCTCAGGGTG 57.727 47.619 0.00 0.00 0.00 4.61
2707 3964 3.774766 TGTACAATGCATAGTCTCAGGGT 59.225 43.478 0.00 0.00 0.00 4.34
2708 3965 4.406648 TGTACAATGCATAGTCTCAGGG 57.593 45.455 0.00 0.00 0.00 4.45
2709 3966 4.212847 GCATGTACAATGCATAGTCTCAGG 59.787 45.833 19.12 0.00 44.00 3.86
2710 3967 4.212847 GGCATGTACAATGCATAGTCTCAG 59.787 45.833 22.92 0.00 46.21 3.35
2711 3968 4.129380 GGCATGTACAATGCATAGTCTCA 58.871 43.478 22.92 0.00 46.21 3.27
2712 3969 3.499918 GGGCATGTACAATGCATAGTCTC 59.500 47.826 22.92 10.19 46.21 3.36
2713 3970 3.137176 AGGGCATGTACAATGCATAGTCT 59.863 43.478 22.92 13.23 46.21 3.24
2714 3971 3.480470 AGGGCATGTACAATGCATAGTC 58.520 45.455 22.92 11.16 46.21 2.59
2715 3972 3.582998 AGGGCATGTACAATGCATAGT 57.417 42.857 22.92 8.67 46.21 2.12
2716 3973 4.083110 GCTAAGGGCATGTACAATGCATAG 60.083 45.833 22.92 20.62 46.21 2.23
2717 3974 3.820467 GCTAAGGGCATGTACAATGCATA 59.180 43.478 22.92 14.96 46.21 3.14
2718 3975 2.624838 GCTAAGGGCATGTACAATGCAT 59.375 45.455 22.92 14.73 46.21 3.96
2719 3976 2.023673 GCTAAGGGCATGTACAATGCA 58.976 47.619 22.92 0.00 46.21 3.96
2720 3977 2.301346 AGCTAAGGGCATGTACAATGC 58.699 47.619 17.01 17.01 44.79 3.56
2721 3978 3.316308 GGAAGCTAAGGGCATGTACAATG 59.684 47.826 0.00 0.12 44.79 2.82
2722 3979 3.053693 TGGAAGCTAAGGGCATGTACAAT 60.054 43.478 0.00 0.00 44.79 2.71
2723 3980 2.307392 TGGAAGCTAAGGGCATGTACAA 59.693 45.455 0.00 0.00 44.79 2.41
2724 3981 1.912731 TGGAAGCTAAGGGCATGTACA 59.087 47.619 0.00 0.00 44.79 2.90
2725 3982 2.565841 CTGGAAGCTAAGGGCATGTAC 58.434 52.381 0.00 0.00 44.79 2.90
2727 3984 3.890527 CTGGAAGCTAAGGGCATGT 57.109 52.632 0.00 0.00 44.79 3.21
2749 4006 2.515991 CATGTACGCCGGGCCATT 60.516 61.111 14.55 0.05 0.00 3.16
2757 4014 2.286184 CGGCATAAAGTTCATGTACGCC 60.286 50.000 7.85 7.85 0.00 5.68
2832 4089 5.927689 ACGATTTCAAACATGCATTTGACAT 59.072 32.000 13.67 12.85 45.84 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.