Multiple sequence alignment - TraesCS7D01G263200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263200 chr7D 100.000 4455 0 0 1 4455 242806379 242801925 0.000000e+00 8227.0
1 TraesCS7D01G263200 chr7D 100.000 304 0 0 4860 5163 242801520 242801217 3.490000e-156 562.0
2 TraesCS7D01G263200 chr7D 82.979 282 42 6 137 414 409315654 409315933 3.090000e-62 250.0
3 TraesCS7D01G263200 chr7D 84.553 246 31 7 167 408 378509535 378509777 2.400000e-58 237.0
4 TraesCS7D01G263200 chr7D 75.600 250 43 15 58 295 116038658 116038901 1.970000e-19 108.0
5 TraesCS7D01G263200 chr7D 92.000 75 6 0 2675 2749 410057986 410057912 7.070000e-19 106.0
6 TraesCS7D01G263200 chr7A 95.098 2101 59 15 657 2752 254880848 254882909 0.000000e+00 3269.0
7 TraesCS7D01G263200 chr7A 96.239 1675 38 8 2799 4455 254883069 254884736 0.000000e+00 2721.0
8 TraesCS7D01G263200 chr7A 95.556 90 2 2 4860 4947 254884776 254884865 5.390000e-30 143.0
9 TraesCS7D01G263200 chr7B 94.548 1669 43 12 2799 4432 218562979 218561324 0.000000e+00 2534.0
10 TraesCS7D01G263200 chr7B 95.876 1067 32 7 1687 2752 218564188 218563133 0.000000e+00 1716.0
11 TraesCS7D01G263200 chr7B 96.131 1008 33 6 697 1701 218565209 218564205 0.000000e+00 1640.0
12 TraesCS7D01G263200 chr7B 89.375 320 17 8 4860 5163 218561312 218560994 2.250000e-103 387.0
13 TraesCS7D01G263200 chr7B 86.250 80 10 1 2669 2748 705478878 705478956 9.210000e-13 86.1
14 TraesCS7D01G263200 chr4D 79.082 392 71 10 29 413 121795365 121795752 5.130000e-65 259.0
15 TraesCS7D01G263200 chr6B 81.150 313 51 7 101 407 209219820 209220130 1.440000e-60 244.0
16 TraesCS7D01G263200 chr3D 84.739 249 33 5 171 415 267852583 267852830 1.440000e-60 244.0
17 TraesCS7D01G263200 chr1D 85.837 233 30 3 184 414 193078073 193078304 1.440000e-60 244.0
18 TraesCS7D01G263200 chr6D 83.137 255 39 4 163 414 244931798 244931545 4.020000e-56 230.0
19 TraesCS7D01G263200 chr3A 83.077 260 37 6 161 414 408555718 408555460 4.020000e-56 230.0
20 TraesCS7D01G263200 chr3B 83.465 254 31 9 160 408 821387541 821387788 5.200000e-55 226.0
21 TraesCS7D01G263200 chr5D 78.261 253 37 15 58 298 171484559 171484313 4.170000e-31 147.0
22 TraesCS7D01G263200 chr5D 87.838 74 8 1 2675 2748 487982259 487982187 9.210000e-13 86.1
23 TraesCS7D01G263200 chr2D 92.405 79 5 1 2671 2749 506776546 506776623 1.520000e-20 111.0
24 TraesCS7D01G263200 chr1B 90.123 81 8 0 2669 2749 332093221 332093301 7.070000e-19 106.0
25 TraesCS7D01G263200 chr1B 89.157 83 9 0 2667 2749 161992190 161992272 2.540000e-18 104.0
26 TraesCS7D01G263200 chr1B 91.667 72 6 0 2678 2749 161992279 161992208 3.290000e-17 100.0
27 TraesCS7D01G263200 chr1A 90.123 81 8 0 2669 2749 306683034 306682954 7.070000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263200 chr7D 242801217 242806379 5162 True 4394.500000 8227 100.0000 1 5163 2 chr7D.!!$R2 5162
1 TraesCS7D01G263200 chr7A 254880848 254884865 4017 False 2044.333333 3269 95.6310 657 4947 3 chr7A.!!$F1 4290
2 TraesCS7D01G263200 chr7B 218560994 218565209 4215 True 1569.250000 2534 93.9825 697 5163 4 chr7B.!!$R1 4466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.038166 GATGGCCTCCACTTTGACCA 59.962 55.000 3.32 0.0 35.80 4.02 F
333 334 0.040942 ACATGCCCCCAACATAGCAA 59.959 50.000 0.00 0.0 38.99 3.91 F
365 366 0.107654 CCCCTCCGATTTGTCTGACC 60.108 60.000 5.17 0.0 0.00 4.02 F
643 644 0.109723 TCGGGTTCCTCTTTTGTGGG 59.890 55.000 0.00 0.0 34.07 4.61 F
648 649 0.821711 TTCCTCTTTTGTGGGCCGTG 60.822 55.000 0.00 0.0 34.07 4.94 F
1485 1490 0.911769 TGATGGCTGTTACCCCAGAG 59.088 55.000 0.00 0.0 34.23 3.35 F
2527 2564 1.129624 GTGTTCTGTGTGTTTGTCGCA 59.870 47.619 0.00 0.0 0.00 5.10 F
3742 3909 0.400213 ATTTCCGGGCAAGAGTCACA 59.600 50.000 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 1381 1.200948 AGTACGAGGTAAACTGGCGAC 59.799 52.381 0.00 0.0 0.00 5.19 R
2306 2343 3.043586 CAGTCGTACAGCCTAAATAGCG 58.956 50.000 0.00 0.0 34.64 4.26 R
2372 2409 3.389221 ACAAAATTCGGCAAATGTGGTC 58.611 40.909 0.00 0.0 0.00 4.02 R
2527 2564 6.656693 CAGGAAAGTCATTTATGAGGTGTCTT 59.343 38.462 0.00 0.0 37.51 3.01 R
2602 2639 8.575565 AATTGTGATGTACTAGTATGCTTACG 57.424 34.615 5.75 0.0 33.32 3.18 R
3352 3517 0.250124 TGTACACCCAACAGAAGGCG 60.250 55.000 0.00 0.0 0.00 5.52 R
4097 4264 0.102481 CTCGTAGTAACATGGCCGCT 59.898 55.000 0.00 0.0 0.00 5.52 R
5059 5265 1.272704 GGGCACAAATTTCCTCTCCCT 60.273 52.381 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.630242 TTAAACTAAAGGCAATGAGAGATGG 57.370 36.000 0.00 0.00 0.00 3.51
40 41 3.549794 ACTAAAGGCAATGAGAGATGGC 58.450 45.455 0.00 0.00 42.00 4.40
41 42 1.772836 AAAGGCAATGAGAGATGGCC 58.227 50.000 0.00 0.00 42.61 5.36
43 44 3.018479 GGCAATGAGAGATGGCCTC 57.982 57.895 3.32 0.00 41.39 4.70
44 45 0.536915 GGCAATGAGAGATGGCCTCC 60.537 60.000 3.32 0.00 42.97 4.30
45 46 0.182061 GCAATGAGAGATGGCCTCCA 59.818 55.000 3.32 0.00 42.97 3.86
46 47 1.964552 CAATGAGAGATGGCCTCCAC 58.035 55.000 3.32 0.00 42.97 4.02
47 48 1.489649 CAATGAGAGATGGCCTCCACT 59.510 52.381 3.32 0.00 42.97 4.00
48 49 1.890552 ATGAGAGATGGCCTCCACTT 58.109 50.000 3.32 0.00 42.97 3.16
49 50 1.661463 TGAGAGATGGCCTCCACTTT 58.339 50.000 3.32 0.00 42.97 2.66
50 51 1.280133 TGAGAGATGGCCTCCACTTTG 59.720 52.381 3.32 0.00 42.97 2.77
51 52 1.556911 GAGAGATGGCCTCCACTTTGA 59.443 52.381 3.32 0.00 42.97 2.69
52 53 1.280421 AGAGATGGCCTCCACTTTGAC 59.720 52.381 3.32 0.00 42.97 3.18
53 54 0.329596 AGATGGCCTCCACTTTGACC 59.670 55.000 3.32 0.00 35.80 4.02
54 55 0.038166 GATGGCCTCCACTTTGACCA 59.962 55.000 3.32 0.00 35.80 4.02
55 56 0.706433 ATGGCCTCCACTTTGACCAT 59.294 50.000 3.32 0.00 35.80 3.55
56 57 0.251297 TGGCCTCCACTTTGACCATG 60.251 55.000 3.32 0.00 0.00 3.66
57 58 0.251341 GGCCTCCACTTTGACCATGT 60.251 55.000 0.00 0.00 0.00 3.21
58 59 1.620822 GCCTCCACTTTGACCATGTT 58.379 50.000 0.00 0.00 0.00 2.71
59 60 1.270550 GCCTCCACTTTGACCATGTTG 59.729 52.381 0.00 0.00 0.00 3.33
60 61 2.862541 CCTCCACTTTGACCATGTTGA 58.137 47.619 0.00 0.00 0.00 3.18
61 62 2.554032 CCTCCACTTTGACCATGTTGAC 59.446 50.000 0.00 0.00 0.00 3.18
62 63 3.213506 CTCCACTTTGACCATGTTGACA 58.786 45.455 0.00 0.00 0.00 3.58
63 64 3.625853 TCCACTTTGACCATGTTGACAA 58.374 40.909 0.00 0.00 0.00 3.18
64 65 3.631686 TCCACTTTGACCATGTTGACAAG 59.368 43.478 0.00 0.00 0.00 3.16
65 66 3.381272 CCACTTTGACCATGTTGACAAGT 59.619 43.478 0.00 0.00 0.00 3.16
66 67 4.498009 CCACTTTGACCATGTTGACAAGTC 60.498 45.833 9.48 9.48 35.21 3.01
67 68 4.096231 CACTTTGACCATGTTGACAAGTCA 59.904 41.667 13.26 13.26 39.71 3.41
68 69 4.704540 ACTTTGACCATGTTGACAAGTCAA 59.295 37.500 20.21 20.21 46.27 3.18
84 85 2.341846 TCAACCTTGACCTGGTCAAC 57.658 50.000 32.67 7.60 45.88 3.18
85 86 1.562008 TCAACCTTGACCTGGTCAACA 59.438 47.619 32.67 17.88 45.88 3.33
86 87 1.949525 CAACCTTGACCTGGTCAACAG 59.050 52.381 32.67 27.56 45.88 3.16
87 88 1.213296 ACCTTGACCTGGTCAACAGT 58.787 50.000 32.67 28.11 45.88 3.55
88 89 1.141053 ACCTTGACCTGGTCAACAGTC 59.859 52.381 32.67 5.37 45.88 3.51
89 90 1.140852 CCTTGACCTGGTCAACAGTCA 59.859 52.381 32.67 15.83 45.88 3.41
90 91 2.421388 CCTTGACCTGGTCAACAGTCAA 60.421 50.000 32.67 15.16 45.88 3.18
91 92 2.325583 TGACCTGGTCAACAGTCAAC 57.674 50.000 26.54 0.00 46.06 3.18
92 93 1.557371 TGACCTGGTCAACAGTCAACA 59.443 47.619 26.54 0.00 46.06 3.33
93 94 2.026729 TGACCTGGTCAACAGTCAACAA 60.027 45.455 26.54 0.00 46.06 2.83
94 95 3.013921 GACCTGGTCAACAGTCAACAAA 58.986 45.455 21.70 0.00 46.06 2.83
95 96 3.426615 ACCTGGTCAACAGTCAACAAAA 58.573 40.909 0.00 0.00 46.06 2.44
96 97 3.192633 ACCTGGTCAACAGTCAACAAAAC 59.807 43.478 0.00 0.00 46.06 2.43
97 98 3.428862 CCTGGTCAACAGTCAACAAAACC 60.429 47.826 0.00 0.00 46.06 3.27
98 99 2.494073 TGGTCAACAGTCAACAAAACCC 59.506 45.455 0.00 0.00 0.00 4.11
99 100 2.159156 GGTCAACAGTCAACAAAACCCC 60.159 50.000 0.00 0.00 0.00 4.95
100 101 2.104170 TCAACAGTCAACAAAACCCCC 58.896 47.619 0.00 0.00 0.00 5.40
101 102 2.107366 CAACAGTCAACAAAACCCCCT 58.893 47.619 0.00 0.00 0.00 4.79
102 103 1.775385 ACAGTCAACAAAACCCCCTG 58.225 50.000 0.00 0.00 0.00 4.45
103 104 1.286553 ACAGTCAACAAAACCCCCTGA 59.713 47.619 0.00 0.00 0.00 3.86
104 105 1.681264 CAGTCAACAAAACCCCCTGAC 59.319 52.381 0.00 0.00 37.30 3.51
105 106 1.037493 GTCAACAAAACCCCCTGACC 58.963 55.000 0.00 0.00 32.10 4.02
106 107 0.105913 TCAACAAAACCCCCTGACCC 60.106 55.000 0.00 0.00 0.00 4.46
107 108 1.118965 CAACAAAACCCCCTGACCCC 61.119 60.000 0.00 0.00 0.00 4.95
108 109 1.595058 AACAAAACCCCCTGACCCCA 61.595 55.000 0.00 0.00 0.00 4.96
109 110 1.234529 CAAAACCCCCTGACCCCAA 59.765 57.895 0.00 0.00 0.00 4.12
110 111 0.178906 CAAAACCCCCTGACCCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
111 112 0.178906 AAAACCCCCTGACCCCAATG 60.179 55.000 0.00 0.00 0.00 2.82
112 113 1.376249 AAACCCCCTGACCCCAATGT 61.376 55.000 0.00 0.00 0.00 2.71
113 114 1.800229 AACCCCCTGACCCCAATGTC 61.800 60.000 0.00 0.00 35.77 3.06
114 115 2.237965 CCCCCTGACCCCAATGTCA 61.238 63.158 0.00 0.00 42.75 3.58
115 116 1.583784 CCCCCTGACCCCAATGTCAT 61.584 60.000 0.00 0.00 43.86 3.06
116 117 0.396139 CCCCTGACCCCAATGTCATG 60.396 60.000 0.00 0.00 43.86 3.07
117 118 1.039233 CCCTGACCCCAATGTCATGC 61.039 60.000 0.00 0.00 43.86 4.06
118 119 0.323633 CCTGACCCCAATGTCATGCA 60.324 55.000 0.00 0.00 43.86 3.96
119 120 0.813184 CTGACCCCAATGTCATGCAC 59.187 55.000 0.00 0.00 43.86 4.57
120 121 0.405198 TGACCCCAATGTCATGCACT 59.595 50.000 0.00 0.00 40.22 4.40
121 122 1.632920 TGACCCCAATGTCATGCACTA 59.367 47.619 0.00 0.00 40.22 2.74
122 123 2.292267 GACCCCAATGTCATGCACTAG 58.708 52.381 0.00 0.00 35.29 2.57
123 124 1.064463 ACCCCAATGTCATGCACTAGG 60.064 52.381 0.00 0.00 0.00 3.02
124 125 1.027357 CCCAATGTCATGCACTAGGC 58.973 55.000 0.00 0.00 45.13 3.93
125 126 1.409241 CCCAATGTCATGCACTAGGCT 60.409 52.381 0.00 0.00 45.15 4.58
126 127 2.158769 CCCAATGTCATGCACTAGGCTA 60.159 50.000 0.00 0.00 45.15 3.93
127 128 3.136763 CCAATGTCATGCACTAGGCTAG 58.863 50.000 19.83 19.83 45.15 3.42
128 129 3.136763 CAATGTCATGCACTAGGCTAGG 58.863 50.000 24.57 14.57 45.15 3.02
129 130 0.465705 TGTCATGCACTAGGCTAGGC 59.534 55.000 24.57 22.58 45.15 3.93
130 131 0.465705 GTCATGCACTAGGCTAGGCA 59.534 55.000 28.02 28.02 45.15 4.75
131 132 1.134401 GTCATGCACTAGGCTAGGCAA 60.134 52.381 28.92 17.72 45.15 4.52
132 133 1.134401 TCATGCACTAGGCTAGGCAAC 60.134 52.381 28.92 16.04 45.15 4.17
133 134 0.181350 ATGCACTAGGCTAGGCAACC 59.819 55.000 28.92 13.77 45.15 3.77
134 135 1.153147 GCACTAGGCTAGGCAACCC 60.153 63.158 24.57 0.00 40.25 4.11
135 136 1.910580 GCACTAGGCTAGGCAACCCA 61.911 60.000 24.57 0.00 40.25 4.51
136 137 0.839946 CACTAGGCTAGGCAACCCAT 59.160 55.000 24.57 0.00 37.17 4.00
137 138 0.839946 ACTAGGCTAGGCAACCCATG 59.160 55.000 24.57 2.80 37.17 3.66
138 139 0.109342 CTAGGCTAGGCAACCCATGG 59.891 60.000 19.70 4.14 37.17 3.66
139 140 1.352622 TAGGCTAGGCAACCCATGGG 61.353 60.000 30.23 30.23 42.03 4.00
157 158 2.165319 GGTACCCATAGCGATTCCAC 57.835 55.000 0.00 0.00 0.00 4.02
158 159 1.270678 GGTACCCATAGCGATTCCACC 60.271 57.143 0.00 0.00 0.00 4.61
159 160 1.692519 GTACCCATAGCGATTCCACCT 59.307 52.381 0.00 0.00 0.00 4.00
160 161 1.213296 ACCCATAGCGATTCCACCTT 58.787 50.000 0.00 0.00 0.00 3.50
161 162 1.564348 ACCCATAGCGATTCCACCTTT 59.436 47.619 0.00 0.00 0.00 3.11
162 163 2.025321 ACCCATAGCGATTCCACCTTTT 60.025 45.455 0.00 0.00 0.00 2.27
163 164 3.201266 ACCCATAGCGATTCCACCTTTTA 59.799 43.478 0.00 0.00 0.00 1.52
164 165 4.204012 CCCATAGCGATTCCACCTTTTAA 58.796 43.478 0.00 0.00 0.00 1.52
165 166 4.642885 CCCATAGCGATTCCACCTTTTAAA 59.357 41.667 0.00 0.00 0.00 1.52
166 167 5.301805 CCCATAGCGATTCCACCTTTTAAAT 59.698 40.000 0.00 0.00 0.00 1.40
167 168 6.183360 CCCATAGCGATTCCACCTTTTAAATT 60.183 38.462 0.00 0.00 0.00 1.82
168 169 6.918022 CCATAGCGATTCCACCTTTTAAATTC 59.082 38.462 0.00 0.00 0.00 2.17
169 170 4.981794 AGCGATTCCACCTTTTAAATTCG 58.018 39.130 0.00 0.00 0.00 3.34
170 171 4.698304 AGCGATTCCACCTTTTAAATTCGA 59.302 37.500 0.00 0.00 0.00 3.71
171 172 5.182380 AGCGATTCCACCTTTTAAATTCGAA 59.818 36.000 0.00 0.00 0.00 3.71
172 173 6.033966 GCGATTCCACCTTTTAAATTCGAAT 58.966 36.000 4.39 4.39 0.00 3.34
173 174 6.530181 GCGATTCCACCTTTTAAATTCGAATT 59.470 34.615 17.60 17.60 0.00 2.17
174 175 7.698970 GCGATTCCACCTTTTAAATTCGAATTA 59.301 33.333 22.99 6.53 0.00 1.40
175 176 9.562583 CGATTCCACCTTTTAAATTCGAATTAA 57.437 29.630 22.99 12.31 0.00 1.40
233 234 9.753674 ACTTTGGAAATTCATAGAAGATAACCA 57.246 29.630 0.00 0.00 0.00 3.67
241 242 9.712305 AATTCATAGAAGATAACCATAACTCGG 57.288 33.333 0.00 0.00 0.00 4.63
242 243 8.473358 TTCATAGAAGATAACCATAACTCGGA 57.527 34.615 0.00 0.00 0.00 4.55
243 244 8.651589 TCATAGAAGATAACCATAACTCGGAT 57.348 34.615 0.00 0.00 0.00 4.18
244 245 8.523658 TCATAGAAGATAACCATAACTCGGATG 58.476 37.037 0.00 0.00 0.00 3.51
245 246 6.978674 AGAAGATAACCATAACTCGGATGA 57.021 37.500 0.00 0.00 0.00 2.92
246 247 7.361457 AGAAGATAACCATAACTCGGATGAA 57.639 36.000 0.00 0.00 0.00 2.57
247 248 7.792032 AGAAGATAACCATAACTCGGATGAAA 58.208 34.615 0.00 0.00 0.00 2.69
248 249 8.265055 AGAAGATAACCATAACTCGGATGAAAA 58.735 33.333 0.00 0.00 0.00 2.29
249 250 8.980481 AAGATAACCATAACTCGGATGAAAAT 57.020 30.769 0.00 0.00 0.00 1.82
290 291 6.828502 TGATCAGAAAATAAGACGAATCCG 57.171 37.500 0.00 0.00 42.50 4.18
291 292 6.569780 TGATCAGAAAATAAGACGAATCCGA 58.430 36.000 0.00 0.00 39.50 4.55
292 293 7.039270 TGATCAGAAAATAAGACGAATCCGAA 58.961 34.615 0.00 0.00 39.50 4.30
293 294 7.710907 TGATCAGAAAATAAGACGAATCCGAAT 59.289 33.333 0.00 0.00 39.50 3.34
294 295 9.193133 GATCAGAAAATAAGACGAATCCGAATA 57.807 33.333 0.00 0.00 39.50 1.75
295 296 9.712305 ATCAGAAAATAAGACGAATCCGAATAT 57.288 29.630 0.00 0.00 39.50 1.28
296 297 8.978539 TCAGAAAATAAGACGAATCCGAATATG 58.021 33.333 0.00 0.00 39.50 1.78
297 298 7.742089 CAGAAAATAAGACGAATCCGAATATGC 59.258 37.037 0.00 0.00 39.50 3.14
298 299 6.481954 AAATAAGACGAATCCGAATATGCC 57.518 37.500 0.00 0.00 39.50 4.40
299 300 3.469008 AAGACGAATCCGAATATGCCA 57.531 42.857 0.00 0.00 39.50 4.92
300 301 2.755650 AGACGAATCCGAATATGCCAC 58.244 47.619 0.00 0.00 39.50 5.01
301 302 1.798813 GACGAATCCGAATATGCCACC 59.201 52.381 0.00 0.00 39.50 4.61
302 303 1.156736 CGAATCCGAATATGCCACCC 58.843 55.000 0.00 0.00 38.22 4.61
303 304 1.542328 CGAATCCGAATATGCCACCCA 60.542 52.381 0.00 0.00 38.22 4.51
304 305 1.880027 GAATCCGAATATGCCACCCAC 59.120 52.381 0.00 0.00 0.00 4.61
305 306 0.843309 ATCCGAATATGCCACCCACA 59.157 50.000 0.00 0.00 0.00 4.17
306 307 0.843309 TCCGAATATGCCACCCACAT 59.157 50.000 0.00 0.00 0.00 3.21
307 308 2.050918 TCCGAATATGCCACCCACATA 58.949 47.619 0.00 0.00 34.64 2.29
308 309 2.151202 CCGAATATGCCACCCACATAC 58.849 52.381 0.00 0.00 33.03 2.39
309 310 2.151202 CGAATATGCCACCCACATACC 58.849 52.381 0.00 0.00 33.03 2.73
310 311 2.224523 CGAATATGCCACCCACATACCT 60.225 50.000 0.00 0.00 33.03 3.08
311 312 2.957402 ATATGCCACCCACATACCTG 57.043 50.000 0.00 0.00 33.03 4.00
312 313 1.590591 TATGCCACCCACATACCTGT 58.409 50.000 0.00 0.00 35.44 4.00
313 314 0.255890 ATGCCACCCACATACCTGTC 59.744 55.000 0.00 0.00 31.62 3.51
314 315 1.130678 TGCCACCCACATACCTGTCA 61.131 55.000 0.00 0.00 31.62 3.58
315 316 0.676782 GCCACCCACATACCTGTCAC 60.677 60.000 0.00 0.00 31.62 3.67
316 317 0.690192 CCACCCACATACCTGTCACA 59.310 55.000 0.00 0.00 31.62 3.58
317 318 1.281867 CCACCCACATACCTGTCACAT 59.718 52.381 0.00 0.00 31.62 3.21
318 319 2.358957 CACCCACATACCTGTCACATG 58.641 52.381 0.00 0.00 31.62 3.21
319 320 1.340017 ACCCACATACCTGTCACATGC 60.340 52.381 0.00 0.00 31.62 4.06
320 321 1.382522 CCACATACCTGTCACATGCC 58.617 55.000 0.00 0.00 31.62 4.40
321 322 1.382522 CACATACCTGTCACATGCCC 58.617 55.000 0.00 0.00 31.62 5.36
322 323 0.255890 ACATACCTGTCACATGCCCC 59.744 55.000 0.00 0.00 0.00 5.80
323 324 0.466189 CATACCTGTCACATGCCCCC 60.466 60.000 0.00 0.00 0.00 5.40
324 325 0.918799 ATACCTGTCACATGCCCCCA 60.919 55.000 0.00 0.00 0.00 4.96
325 326 1.136961 TACCTGTCACATGCCCCCAA 61.137 55.000 0.00 0.00 0.00 4.12
326 327 1.978617 CCTGTCACATGCCCCCAAC 60.979 63.158 0.00 0.00 0.00 3.77
327 328 1.228521 CTGTCACATGCCCCCAACA 60.229 57.895 0.00 0.00 0.00 3.33
328 329 0.612732 CTGTCACATGCCCCCAACAT 60.613 55.000 0.00 0.00 0.00 2.71
329 330 0.701147 TGTCACATGCCCCCAACATA 59.299 50.000 0.00 0.00 0.00 2.29
330 331 1.340893 TGTCACATGCCCCCAACATAG 60.341 52.381 0.00 0.00 0.00 2.23
331 332 0.395586 TCACATGCCCCCAACATAGC 60.396 55.000 0.00 0.00 0.00 2.97
332 333 0.683828 CACATGCCCCCAACATAGCA 60.684 55.000 0.00 0.00 40.00 3.49
333 334 0.040942 ACATGCCCCCAACATAGCAA 59.959 50.000 0.00 0.00 38.99 3.91
334 335 1.193323 CATGCCCCCAACATAGCAAA 58.807 50.000 0.00 0.00 38.99 3.68
335 336 1.134729 CATGCCCCCAACATAGCAAAC 60.135 52.381 0.00 0.00 38.99 2.93
336 337 0.178950 TGCCCCCAACATAGCAAACA 60.179 50.000 0.00 0.00 30.97 2.83
337 338 1.194218 GCCCCCAACATAGCAAACAT 58.806 50.000 0.00 0.00 0.00 2.71
338 339 1.134729 GCCCCCAACATAGCAAACATG 60.135 52.381 0.00 0.00 0.00 3.21
339 340 1.481772 CCCCCAACATAGCAAACATGG 59.518 52.381 0.00 0.00 0.00 3.66
340 341 2.455557 CCCCAACATAGCAAACATGGA 58.544 47.619 0.00 0.00 0.00 3.41
341 342 2.830923 CCCCAACATAGCAAACATGGAA 59.169 45.455 0.00 0.00 0.00 3.53
342 343 3.368323 CCCCAACATAGCAAACATGGAAC 60.368 47.826 0.00 0.00 0.00 3.62
343 344 3.368323 CCCAACATAGCAAACATGGAACC 60.368 47.826 0.00 0.00 0.00 3.62
344 345 3.511146 CCAACATAGCAAACATGGAACCT 59.489 43.478 0.00 0.00 0.00 3.50
345 346 4.021192 CCAACATAGCAAACATGGAACCTT 60.021 41.667 0.00 0.00 0.00 3.50
346 347 5.163513 CAACATAGCAAACATGGAACCTTC 58.836 41.667 0.00 0.00 0.00 3.46
355 356 4.068257 GGAACCTTCCCCTCCGAT 57.932 61.111 0.00 0.00 41.62 4.18
356 357 2.308185 GGAACCTTCCCCTCCGATT 58.692 57.895 0.00 0.00 41.62 3.34
357 358 0.624254 GGAACCTTCCCCTCCGATTT 59.376 55.000 0.00 0.00 41.62 2.17
358 359 1.682087 GGAACCTTCCCCTCCGATTTG 60.682 57.143 0.00 0.00 41.62 2.32
359 360 1.004394 GAACCTTCCCCTCCGATTTGT 59.996 52.381 0.00 0.00 0.00 2.83
360 361 0.618981 ACCTTCCCCTCCGATTTGTC 59.381 55.000 0.00 0.00 0.00 3.18
361 362 0.912486 CCTTCCCCTCCGATTTGTCT 59.088 55.000 0.00 0.00 0.00 3.41
362 363 1.407437 CCTTCCCCTCCGATTTGTCTG 60.407 57.143 0.00 0.00 0.00 3.51
363 364 1.555075 CTTCCCCTCCGATTTGTCTGA 59.445 52.381 0.00 0.00 0.00 3.27
364 365 0.902531 TCCCCTCCGATTTGTCTGAC 59.097 55.000 0.00 0.00 0.00 3.51
365 366 0.107654 CCCCTCCGATTTGTCTGACC 60.108 60.000 5.17 0.00 0.00 4.02
366 367 0.460284 CCCTCCGATTTGTCTGACCG 60.460 60.000 5.17 1.33 0.00 4.79
367 368 0.530744 CCTCCGATTTGTCTGACCGA 59.469 55.000 5.17 0.00 0.00 4.69
368 369 1.137086 CCTCCGATTTGTCTGACCGAT 59.863 52.381 5.17 0.00 0.00 4.18
369 370 2.361119 CCTCCGATTTGTCTGACCGATA 59.639 50.000 5.17 0.00 0.00 2.92
370 371 3.181479 CCTCCGATTTGTCTGACCGATAA 60.181 47.826 5.17 0.00 0.00 1.75
371 372 4.430007 CTCCGATTTGTCTGACCGATAAA 58.570 43.478 5.17 0.00 37.18 1.40
372 373 5.018539 TCCGATTTGTCTGACCGATAAAT 57.981 39.130 5.17 4.58 43.45 1.40
373 374 4.808895 TCCGATTTGTCTGACCGATAAATG 59.191 41.667 5.17 1.19 41.64 2.32
374 375 4.518217 CGATTTGTCTGACCGATAAATGC 58.482 43.478 5.17 0.00 41.64 3.56
375 376 4.271049 CGATTTGTCTGACCGATAAATGCT 59.729 41.667 5.17 0.00 41.64 3.79
376 377 5.220662 CGATTTGTCTGACCGATAAATGCTT 60.221 40.000 5.17 0.00 41.64 3.91
377 378 6.019075 CGATTTGTCTGACCGATAAATGCTTA 60.019 38.462 5.17 0.00 41.64 3.09
378 379 6.662414 TTTGTCTGACCGATAAATGCTTAG 57.338 37.500 5.17 0.00 29.19 2.18
379 380 5.592104 TGTCTGACCGATAAATGCTTAGA 57.408 39.130 5.17 0.00 0.00 2.10
380 381 5.592054 TGTCTGACCGATAAATGCTTAGAG 58.408 41.667 5.17 0.00 0.00 2.43
381 382 5.127194 TGTCTGACCGATAAATGCTTAGAGT 59.873 40.000 5.17 0.00 0.00 3.24
382 383 5.688176 GTCTGACCGATAAATGCTTAGAGTC 59.312 44.000 0.00 0.00 0.00 3.36
383 384 4.607955 TGACCGATAAATGCTTAGAGTCG 58.392 43.478 0.00 0.00 0.00 4.18
385 386 3.318017 CCGATAAATGCTTAGAGTCGGG 58.682 50.000 3.16 0.00 42.36 5.14
386 387 3.005472 CCGATAAATGCTTAGAGTCGGGA 59.995 47.826 3.16 0.00 42.36 5.14
387 388 4.500887 CCGATAAATGCTTAGAGTCGGGAA 60.501 45.833 3.16 0.00 42.36 3.97
388 389 5.047847 CGATAAATGCTTAGAGTCGGGAAA 58.952 41.667 0.00 0.00 0.00 3.13
389 390 5.522460 CGATAAATGCTTAGAGTCGGGAAAA 59.478 40.000 0.00 0.00 0.00 2.29
390 391 6.202954 CGATAAATGCTTAGAGTCGGGAAAAT 59.797 38.462 0.00 0.00 0.00 1.82
391 392 7.384115 CGATAAATGCTTAGAGTCGGGAAAATA 59.616 37.037 0.00 0.00 0.00 1.40
392 393 9.220767 GATAAATGCTTAGAGTCGGGAAAATAT 57.779 33.333 0.00 0.00 0.00 1.28
393 394 7.881775 AAATGCTTAGAGTCGGGAAAATATT 57.118 32.000 0.00 0.00 0.00 1.28
394 395 7.881775 AATGCTTAGAGTCGGGAAAATATTT 57.118 32.000 0.00 0.00 0.00 1.40
395 396 6.920569 TGCTTAGAGTCGGGAAAATATTTC 57.079 37.500 0.10 0.00 0.00 2.17
396 397 5.820947 TGCTTAGAGTCGGGAAAATATTTCC 59.179 40.000 12.42 12.42 37.86 3.13
410 411 8.561932 GAAAATATTTCCGAATACTTTCCTGC 57.438 34.615 0.10 0.00 37.71 4.85
411 412 7.881775 AAATATTTCCGAATACTTTCCTGCT 57.118 32.000 0.00 0.00 30.87 4.24
412 413 7.497925 AATATTTCCGAATACTTTCCTGCTC 57.502 36.000 0.00 0.00 30.87 4.26
413 414 2.981859 TCCGAATACTTTCCTGCTCC 57.018 50.000 0.00 0.00 0.00 4.70
414 415 2.184533 TCCGAATACTTTCCTGCTCCA 58.815 47.619 0.00 0.00 0.00 3.86
415 416 2.569853 TCCGAATACTTTCCTGCTCCAA 59.430 45.455 0.00 0.00 0.00 3.53
416 417 3.008594 TCCGAATACTTTCCTGCTCCAAA 59.991 43.478 0.00 0.00 0.00 3.28
417 418 3.375299 CCGAATACTTTCCTGCTCCAAAG 59.625 47.826 0.00 0.00 35.97 2.77
418 419 4.253685 CGAATACTTTCCTGCTCCAAAGA 58.746 43.478 8.31 0.00 34.30 2.52
419 420 4.695455 CGAATACTTTCCTGCTCCAAAGAA 59.305 41.667 8.31 0.00 34.30 2.52
420 421 5.390991 CGAATACTTTCCTGCTCCAAAGAAC 60.391 44.000 8.31 0.00 34.30 3.01
421 422 2.587522 ACTTTCCTGCTCCAAAGAACC 58.412 47.619 8.31 0.00 34.30 3.62
422 423 1.537202 CTTTCCTGCTCCAAAGAACCG 59.463 52.381 0.00 0.00 32.20 4.44
423 424 0.762418 TTCCTGCTCCAAAGAACCGA 59.238 50.000 0.00 0.00 0.00 4.69
424 425 0.762418 TCCTGCTCCAAAGAACCGAA 59.238 50.000 0.00 0.00 0.00 4.30
425 426 1.160137 CCTGCTCCAAAGAACCGAAG 58.840 55.000 0.00 0.00 0.00 3.79
445 446 4.459089 GGCTGCTCGGTCTGGGAC 62.459 72.222 0.00 0.00 0.00 4.46
446 447 4.803426 GCTGCTCGGTCTGGGACG 62.803 72.222 0.00 0.00 32.65 4.79
447 448 3.374402 CTGCTCGGTCTGGGACGT 61.374 66.667 0.00 0.00 32.65 4.34
448 449 3.343788 CTGCTCGGTCTGGGACGTC 62.344 68.421 7.13 7.13 32.65 4.34
449 450 3.371063 GCTCGGTCTGGGACGTCA 61.371 66.667 18.91 0.00 32.65 4.35
450 451 2.711922 GCTCGGTCTGGGACGTCAT 61.712 63.158 18.91 0.00 32.65 3.06
451 452 1.433879 CTCGGTCTGGGACGTCATC 59.566 63.158 18.91 9.49 32.65 2.92
452 453 1.001269 TCGGTCTGGGACGTCATCT 60.001 57.895 18.91 0.00 32.65 2.90
453 454 0.253894 TCGGTCTGGGACGTCATCTA 59.746 55.000 18.91 0.00 32.65 1.98
454 455 0.663688 CGGTCTGGGACGTCATCTAG 59.336 60.000 18.91 8.33 32.65 2.43
455 456 1.765230 GGTCTGGGACGTCATCTAGT 58.235 55.000 18.91 0.00 32.65 2.57
456 457 2.100989 GGTCTGGGACGTCATCTAGTT 58.899 52.381 18.91 0.00 32.65 2.24
457 458 2.496470 GGTCTGGGACGTCATCTAGTTT 59.504 50.000 18.91 0.00 32.65 2.66
458 459 3.698040 GGTCTGGGACGTCATCTAGTTTA 59.302 47.826 18.91 0.00 32.65 2.01
459 460 4.341520 GGTCTGGGACGTCATCTAGTTTAT 59.658 45.833 18.91 0.00 32.65 1.40
460 461 5.507650 GGTCTGGGACGTCATCTAGTTTATC 60.508 48.000 18.91 0.00 32.65 1.75
461 462 5.067413 GTCTGGGACGTCATCTAGTTTATCA 59.933 44.000 18.91 0.00 0.00 2.15
462 463 5.833667 TCTGGGACGTCATCTAGTTTATCAT 59.166 40.000 18.91 0.00 0.00 2.45
463 464 7.002276 TCTGGGACGTCATCTAGTTTATCATA 58.998 38.462 18.91 0.00 0.00 2.15
464 465 7.175119 TCTGGGACGTCATCTAGTTTATCATAG 59.825 40.741 18.91 0.00 0.00 2.23
465 466 7.002276 TGGGACGTCATCTAGTTTATCATAGA 58.998 38.462 18.91 0.00 32.79 1.98
466 467 7.670140 TGGGACGTCATCTAGTTTATCATAGAT 59.330 37.037 18.91 0.00 38.91 1.98
474 475 9.149225 CATCTAGTTTATCATAGATGCTGAACC 57.851 37.037 8.75 0.00 44.92 3.62
475 476 8.250143 TCTAGTTTATCATAGATGCTGAACCA 57.750 34.615 0.00 0.00 0.00 3.67
476 477 8.704668 TCTAGTTTATCATAGATGCTGAACCAA 58.295 33.333 0.00 0.00 0.00 3.67
477 478 9.330063 CTAGTTTATCATAGATGCTGAACCAAA 57.670 33.333 0.00 0.00 0.00 3.28
478 479 8.757982 AGTTTATCATAGATGCTGAACCAAAT 57.242 30.769 0.00 0.00 0.00 2.32
479 480 8.844244 AGTTTATCATAGATGCTGAACCAAATC 58.156 33.333 0.00 0.00 0.00 2.17
480 481 7.750229 TTATCATAGATGCTGAACCAAATCC 57.250 36.000 0.00 0.00 0.00 3.01
481 482 5.378230 TCATAGATGCTGAACCAAATCCT 57.622 39.130 0.00 0.00 0.00 3.24
482 483 5.128205 TCATAGATGCTGAACCAAATCCTG 58.872 41.667 0.00 0.00 0.00 3.86
483 484 3.446442 AGATGCTGAACCAAATCCTGT 57.554 42.857 0.00 0.00 0.00 4.00
484 485 3.087031 AGATGCTGAACCAAATCCTGTG 58.913 45.455 0.00 0.00 0.00 3.66
485 486 2.655090 TGCTGAACCAAATCCTGTGA 57.345 45.000 0.00 0.00 0.00 3.58
486 487 3.159213 TGCTGAACCAAATCCTGTGAT 57.841 42.857 0.00 0.00 0.00 3.06
487 488 3.499338 TGCTGAACCAAATCCTGTGATT 58.501 40.909 0.00 0.00 43.08 2.57
489 490 4.344679 TGCTGAACCAAATCCTGTGATTTT 59.655 37.500 0.00 0.00 46.57 1.82
490 491 4.687483 GCTGAACCAAATCCTGTGATTTTG 59.313 41.667 0.00 0.00 46.57 2.44
491 492 5.739935 GCTGAACCAAATCCTGTGATTTTGT 60.740 40.000 0.00 0.00 46.57 2.83
497 498 9.705290 AACCAAATCCTGTGATTTTGTTTATAC 57.295 29.630 10.12 0.00 46.48 1.47
498 499 8.865090 ACCAAATCCTGTGATTTTGTTTATACA 58.135 29.630 0.00 0.00 46.57 2.29
499 500 9.703892 CCAAATCCTGTGATTTTGTTTATACAA 57.296 29.630 0.00 0.00 46.57 2.41
564 565 7.513190 TCAATTTACAAATTAAATTCGCGGG 57.487 32.000 6.13 0.00 36.52 6.13
565 566 7.313646 TCAATTTACAAATTAAATTCGCGGGA 58.686 30.769 6.13 0.00 36.52 5.14
566 567 7.813148 TCAATTTACAAATTAAATTCGCGGGAA 59.187 29.630 17.84 17.84 36.52 3.97
567 568 6.931243 TTTACAAATTAAATTCGCGGGAAC 57.069 33.333 17.90 0.00 34.37 3.62
568 569 7.201367 AATTTACAAATTAAATTCGCGGGAACG 60.201 33.333 17.90 0.00 46.14 3.95
579 580 4.235731 GGGAACGGTTATGGGCTG 57.764 61.111 0.00 0.00 0.00 4.85
580 581 1.453197 GGGAACGGTTATGGGCTGG 60.453 63.158 0.00 0.00 0.00 4.85
581 582 2.119029 GGAACGGTTATGGGCTGGC 61.119 63.158 0.00 0.00 0.00 4.85
582 583 2.044352 AACGGTTATGGGCTGGCC 60.044 61.111 14.23 14.23 0.00 5.36
583 584 3.987954 AACGGTTATGGGCTGGCCG 62.988 63.158 16.08 4.79 46.83 6.13
584 585 4.169696 CGGTTATGGGCTGGCCGA 62.170 66.667 16.08 4.02 44.57 5.54
585 586 2.515901 GGTTATGGGCTGGCCGAT 59.484 61.111 16.08 13.23 38.15 4.18
586 587 1.152756 GGTTATGGGCTGGCCGATT 60.153 57.895 16.08 5.63 36.03 3.34
587 588 0.755327 GGTTATGGGCTGGCCGATTT 60.755 55.000 16.08 3.10 36.03 2.17
588 589 0.385390 GTTATGGGCTGGCCGATTTG 59.615 55.000 16.08 0.00 36.03 2.32
589 590 0.257328 TTATGGGCTGGCCGATTTGA 59.743 50.000 16.08 0.00 36.03 2.69
590 591 0.465460 TATGGGCTGGCCGATTTGAC 60.465 55.000 16.08 0.00 36.03 3.18
591 592 2.044946 GGGCTGGCCGATTTGACT 60.045 61.111 3.84 0.00 36.85 3.41
592 593 1.678970 GGGCTGGCCGATTTGACTT 60.679 57.895 3.84 0.00 36.85 3.01
593 594 1.250840 GGGCTGGCCGATTTGACTTT 61.251 55.000 3.84 0.00 36.85 2.66
594 595 0.603065 GGCTGGCCGATTTGACTTTT 59.397 50.000 0.00 0.00 0.00 2.27
595 596 1.000843 GGCTGGCCGATTTGACTTTTT 59.999 47.619 0.00 0.00 0.00 1.94
596 597 2.061028 GCTGGCCGATTTGACTTTTTG 58.939 47.619 0.00 0.00 0.00 2.44
597 598 2.545742 GCTGGCCGATTTGACTTTTTGT 60.546 45.455 0.00 0.00 0.00 2.83
598 599 3.308530 CTGGCCGATTTGACTTTTTGTC 58.691 45.455 0.00 0.00 45.54 3.18
599 600 2.035321 TGGCCGATTTGACTTTTTGTCC 59.965 45.455 0.00 0.00 44.75 4.02
600 601 2.609491 GGCCGATTTGACTTTTTGTCCC 60.609 50.000 0.00 0.00 44.75 4.46
601 602 2.296190 GCCGATTTGACTTTTTGTCCCT 59.704 45.455 0.00 0.00 44.75 4.20
602 603 3.857010 GCCGATTTGACTTTTTGTCCCTG 60.857 47.826 0.00 0.00 44.75 4.45
603 604 3.308530 CGATTTGACTTTTTGTCCCTGC 58.691 45.455 0.00 0.00 44.75 4.85
604 605 3.653344 GATTTGACTTTTTGTCCCTGCC 58.347 45.455 0.00 0.00 44.75 4.85
605 606 2.452600 TTGACTTTTTGTCCCTGCCT 57.547 45.000 0.00 0.00 44.75 4.75
606 607 1.691196 TGACTTTTTGTCCCTGCCTG 58.309 50.000 0.00 0.00 44.75 4.85
607 608 0.961753 GACTTTTTGTCCCTGCCTGG 59.038 55.000 0.00 0.00 39.69 4.45
608 609 0.555769 ACTTTTTGTCCCTGCCTGGA 59.444 50.000 0.00 0.00 38.35 3.86
609 610 1.251251 CTTTTTGTCCCTGCCTGGAG 58.749 55.000 0.00 0.00 38.35 3.86
610 611 0.827507 TTTTTGTCCCTGCCTGGAGC 60.828 55.000 0.00 0.00 44.14 4.70
623 624 2.888863 GGAGCACTCTCTCCGTGG 59.111 66.667 0.00 0.00 42.74 4.94
624 625 1.979693 GGAGCACTCTCTCCGTGGT 60.980 63.158 0.00 0.00 42.74 4.16
625 626 3.688086 AGCACTCTCTCCGTGGTC 58.312 61.111 0.00 0.00 38.61 4.02
626 627 2.179517 GCACTCTCTCCGTGGTCG 59.820 66.667 0.00 0.00 33.10 4.79
636 637 3.057337 CGTGGTCGGGTTCCTCTT 58.943 61.111 0.00 0.00 0.00 2.85
637 638 1.370064 CGTGGTCGGGTTCCTCTTT 59.630 57.895 0.00 0.00 0.00 2.52
638 639 0.250166 CGTGGTCGGGTTCCTCTTTT 60.250 55.000 0.00 0.00 0.00 2.27
639 640 1.235724 GTGGTCGGGTTCCTCTTTTG 58.764 55.000 0.00 0.00 0.00 2.44
640 641 0.841289 TGGTCGGGTTCCTCTTTTGT 59.159 50.000 0.00 0.00 0.00 2.83
641 642 1.235724 GGTCGGGTTCCTCTTTTGTG 58.764 55.000 0.00 0.00 0.00 3.33
642 643 1.235724 GTCGGGTTCCTCTTTTGTGG 58.764 55.000 0.00 0.00 34.56 4.17
643 644 0.109723 TCGGGTTCCTCTTTTGTGGG 59.890 55.000 0.00 0.00 34.07 4.61
644 645 1.524008 CGGGTTCCTCTTTTGTGGGC 61.524 60.000 0.00 0.00 34.07 5.36
645 646 1.185618 GGGTTCCTCTTTTGTGGGCC 61.186 60.000 0.00 0.00 34.07 5.80
646 647 1.524008 GGTTCCTCTTTTGTGGGCCG 61.524 60.000 0.00 0.00 34.07 6.13
647 648 0.822121 GTTCCTCTTTTGTGGGCCGT 60.822 55.000 0.00 0.00 34.07 5.68
648 649 0.821711 TTCCTCTTTTGTGGGCCGTG 60.822 55.000 0.00 0.00 34.07 4.94
649 650 2.644992 CTCTTTTGTGGGCCGTGC 59.355 61.111 0.00 0.00 0.00 5.34
650 651 3.254014 CTCTTTTGTGGGCCGTGCG 62.254 63.158 0.00 0.00 0.00 5.34
651 652 3.591835 CTTTTGTGGGCCGTGCGT 61.592 61.111 0.00 0.00 0.00 5.24
652 653 3.822403 CTTTTGTGGGCCGTGCGTG 62.822 63.158 0.00 0.00 0.00 5.34
1161 1163 2.470821 GATTTCGGTCTGGATGTACGG 58.529 52.381 0.00 0.00 0.00 4.02
1226 1230 9.358872 GAAATTGAGTTTTTCTTTCAAGAGTGT 57.641 29.630 0.00 0.00 36.22 3.55
1278 1283 4.695928 GTGGAGTTAGTCAGAATGGGTTTC 59.304 45.833 0.00 0.00 36.16 2.78
1376 1381 6.743575 ACTCTGAAATTATCTTTTGACCCG 57.256 37.500 0.00 0.00 0.00 5.28
1476 1481 1.376424 CCGCTCTGTGATGGCTGTT 60.376 57.895 0.00 0.00 0.00 3.16
1485 1490 0.911769 TGATGGCTGTTACCCCAGAG 59.088 55.000 0.00 0.00 34.23 3.35
1491 1496 2.026262 GGCTGTTACCCCAGAGAAATGA 60.026 50.000 0.00 0.00 34.23 2.57
1560 1566 9.981114 TTCATTATCATACAACGATACATCTGT 57.019 29.630 0.00 0.00 0.00 3.41
1564 1570 7.936950 ATCATACAACGATACATCTGTGAAG 57.063 36.000 0.00 0.00 0.00 3.02
1615 1621 7.712639 AGGTGAAATATATGTTGAGCAGTACAG 59.287 37.037 0.00 0.00 0.00 2.74
1752 1789 6.430925 AGCTGCAACTGATTTCAATTAGTACA 59.569 34.615 1.02 0.42 34.57 2.90
1846 1883 2.287308 TGCAATTGCTACCAACGTTGAC 60.287 45.455 29.35 15.28 42.66 3.18
1989 2026 7.801716 TTGAGTGCACTTACAATACTTCTTT 57.198 32.000 22.65 0.00 0.00 2.52
2082 2119 8.531622 AATCACGATAAATTGCATTTTGTTCA 57.468 26.923 15.14 0.00 33.82 3.18
2112 2149 7.161404 TCTGTACATATGGCTTGATATTGACC 58.839 38.462 7.80 0.00 0.00 4.02
2152 2189 9.905713 AGAGCTAAATAGTCAAAATGGTCATTA 57.094 29.630 0.00 0.00 0.00 1.90
2240 2277 8.232913 TGTTTAGGTGAGCTTCAACTTAAATT 57.767 30.769 8.68 0.00 42.87 1.82
2297 2334 1.761449 TGCAGCACTTCACAGGAAAA 58.239 45.000 0.00 0.00 31.35 2.29
2306 2343 4.800471 CACTTCACAGGAAAAGCTTTTGTC 59.200 41.667 28.42 18.86 31.35 3.18
2372 2409 8.786937 AATGTTTGCTATGATTGCTTATTACG 57.213 30.769 0.00 0.00 0.00 3.18
2527 2564 1.129624 GTGTTCTGTGTGTTTGTCGCA 59.870 47.619 0.00 0.00 0.00 5.10
2602 2639 2.401351 GTGGTTGTCTTCACCGTCTAC 58.599 52.381 0.00 0.00 0.00 2.59
2626 2663 7.713750 ACGTAAGCATACTAGTACATCACAAT 58.286 34.615 4.31 0.00 45.62 2.71
2629 2666 9.751542 GTAAGCATACTAGTACATCACAATTCT 57.248 33.333 4.31 0.00 0.00 2.40
2700 2737 6.126863 TCCCTCTGTTCACAAATGTAAGAT 57.873 37.500 0.00 0.00 0.00 2.40
2719 2756 9.853555 TGTAAGATGTTTTGGCAGTATAAATTG 57.146 29.630 0.00 0.00 0.00 2.32
2781 2904 6.939551 TTTGTTTACTGTCTCGTACATAGC 57.060 37.500 0.00 0.00 37.50 2.97
2826 2978 4.706962 ACACAACTGAGCTTCTTTTCCTTT 59.293 37.500 0.00 0.00 0.00 3.11
2867 3020 9.349713 CTACTTCTTCTTACATCTGGTAGAGAT 57.650 37.037 0.00 0.00 42.70 2.75
2901 3054 2.307768 CTCGCAATACTCACCCTCCTA 58.692 52.381 0.00 0.00 0.00 2.94
2902 3055 2.029623 TCGCAATACTCACCCTCCTAC 58.970 52.381 0.00 0.00 0.00 3.18
3035 3188 1.635663 CCTGCTTGCTTTACCGACCG 61.636 60.000 0.00 0.00 0.00 4.79
3261 3426 3.406764 GATTTCTGCTCACTCAGTTGGT 58.593 45.455 0.00 0.00 35.63 3.67
3352 3517 6.366332 CCATGTTAATCTGCCTCTACGTATTC 59.634 42.308 0.00 0.00 0.00 1.75
3397 3562 4.439968 TCAAGATTAGTGATGCTGAGCAG 58.560 43.478 14.36 0.00 43.65 4.24
3437 3602 3.126001 TGTTAAAGACACCAGCCTCAG 57.874 47.619 0.00 0.00 32.00 3.35
3727 3894 9.014297 TCTATTCCTCCTTCAAAGAACAATTTC 57.986 33.333 0.00 0.00 0.00 2.17
3742 3909 0.400213 ATTTCCGGGCAAGAGTCACA 59.600 50.000 0.00 0.00 0.00 3.58
3783 3950 2.950781 AGCACGATCTTCATCTAGGGA 58.049 47.619 0.00 0.00 0.00 4.20
3816 3983 2.103339 AACATGGGCAAGGCTGTTGC 62.103 55.000 13.90 13.90 44.22 4.17
3875 4042 2.202797 CCAGGACGACAGCCGATG 60.203 66.667 0.00 0.00 41.76 3.84
3929 4096 1.556911 TGGATGAGAAAGAGGGCAGAC 59.443 52.381 0.00 0.00 0.00 3.51
3972 4139 1.280457 AGCCGAGATGAACTTTCCCT 58.720 50.000 0.00 0.00 0.00 4.20
3991 4158 2.747855 GAGCTTGTGGAAGGCCGG 60.748 66.667 0.00 0.00 36.79 6.13
4081 4248 0.537143 CTGTGCAAACAGCCCCTACA 60.537 55.000 0.00 0.00 44.83 2.74
4146 4315 1.284297 GCAAGCACAAACGGAATGCC 61.284 55.000 0.00 0.00 40.33 4.40
4279 4448 2.052782 ACAGACTTCCCGTTGCTTTT 57.947 45.000 0.00 0.00 0.00 2.27
4284 4453 0.887387 CTTCCCGTTGCTTTTCCGGA 60.887 55.000 0.00 0.00 44.41 5.14
4436 4626 4.608948 TGGGACAGTTTGTGTTTGTTTT 57.391 36.364 0.00 0.00 40.56 2.43
4437 4627 4.561105 TGGGACAGTTTGTGTTTGTTTTC 58.439 39.130 0.00 0.00 40.56 2.29
4438 4628 4.282195 TGGGACAGTTTGTGTTTGTTTTCT 59.718 37.500 0.00 0.00 40.56 2.52
4966 5165 0.531200 CGCTCCGACCCTCTTTAGTT 59.469 55.000 0.00 0.00 0.00 2.24
4967 5166 1.469423 CGCTCCGACCCTCTTTAGTTC 60.469 57.143 0.00 0.00 0.00 3.01
4968 5167 1.469423 GCTCCGACCCTCTTTAGTTCG 60.469 57.143 0.00 0.00 0.00 3.95
4970 5169 1.815003 TCCGACCCTCTTTAGTTCGAC 59.185 52.381 0.00 0.00 31.22 4.20
4972 5171 3.012518 CCGACCCTCTTTAGTTCGACTA 58.987 50.000 0.00 0.00 31.22 2.59
4973 5172 3.441572 CCGACCCTCTTTAGTTCGACTAA 59.558 47.826 0.00 0.00 38.79 2.24
4975 5174 5.393896 CCGACCCTCTTTAGTTCGACTAAAT 60.394 44.000 15.70 5.85 46.10 1.40
4976 5175 5.515626 CGACCCTCTTTAGTTCGACTAAATG 59.484 44.000 15.70 12.64 46.10 2.32
4977 5176 6.600882 ACCCTCTTTAGTTCGACTAAATGA 57.399 37.500 15.70 14.02 46.10 2.57
4978 5177 6.631962 ACCCTCTTTAGTTCGACTAAATGAG 58.368 40.000 20.95 20.95 46.10 2.90
5021 5227 9.082313 ACATCACTTTTGAAAATCTAGTCCATT 57.918 29.630 0.00 0.00 34.61 3.16
5037 5243 8.567948 TCTAGTCCATTTGATTTGTTTCTTGTC 58.432 33.333 0.00 0.00 0.00 3.18
5039 5245 6.039270 AGTCCATTTGATTTGTTTCTTGTCGA 59.961 34.615 0.00 0.00 0.00 4.20
5050 5256 2.168326 TCTTGTCGAGCTGCATTCAA 57.832 45.000 1.02 1.25 0.00 2.69
5059 5265 3.489568 CGAGCTGCATTCAATATTTGCCA 60.490 43.478 1.02 0.00 35.51 4.92
5080 5286 1.272704 GGGAGAGGAAATTTGTGCCCT 60.273 52.381 0.00 0.00 0.00 5.19
5092 5298 1.108727 TGTGCCCTTTGTCTGCTTGG 61.109 55.000 0.00 0.00 0.00 3.61
5124 5330 1.959985 TGCTCAAAAATTGCTCCCGAA 59.040 42.857 0.00 0.00 0.00 4.30
5148 5354 2.029290 ACCACTACTACTTTGCAGACGG 60.029 50.000 0.00 0.00 0.00 4.79
5153 5359 1.414919 ACTACTTTGCAGACGGGTTCA 59.585 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.689972 CCATCTCTCATTGCCTTTAGTTTAATT 58.310 33.333 0.00 0.00 0.00 1.40
14 15 7.201857 GCCATCTCTCATTGCCTTTAGTTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
15 16 6.095440 GCCATCTCTCATTGCCTTTAGTTTAA 59.905 38.462 0.00 0.00 0.00 1.52
16 17 5.590259 GCCATCTCTCATTGCCTTTAGTTTA 59.410 40.000 0.00 0.00 0.00 2.01
17 18 4.400567 GCCATCTCTCATTGCCTTTAGTTT 59.599 41.667 0.00 0.00 0.00 2.66
18 19 3.950395 GCCATCTCTCATTGCCTTTAGTT 59.050 43.478 0.00 0.00 0.00 2.24
19 20 3.549794 GCCATCTCTCATTGCCTTTAGT 58.450 45.455 0.00 0.00 0.00 2.24
20 21 2.883386 GGCCATCTCTCATTGCCTTTAG 59.117 50.000 0.00 0.00 39.05 1.85
21 22 2.936202 GGCCATCTCTCATTGCCTTTA 58.064 47.619 0.00 0.00 39.05 1.85
22 23 1.772836 GGCCATCTCTCATTGCCTTT 58.227 50.000 0.00 0.00 39.05 3.11
23 24 3.509517 GGCCATCTCTCATTGCCTT 57.490 52.632 0.00 0.00 39.05 4.35
25 26 0.536915 GGAGGCCATCTCTCATTGCC 60.537 60.000 5.01 0.00 42.10 4.52
26 27 0.182061 TGGAGGCCATCTCTCATTGC 59.818 55.000 5.01 0.00 42.10 3.56
27 28 1.489649 AGTGGAGGCCATCTCTCATTG 59.510 52.381 5.01 0.00 42.10 2.82
28 29 1.890552 AGTGGAGGCCATCTCTCATT 58.109 50.000 5.01 0.00 42.10 2.57
29 30 1.890552 AAGTGGAGGCCATCTCTCAT 58.109 50.000 5.01 0.00 42.10 2.90
30 31 1.280133 CAAAGTGGAGGCCATCTCTCA 59.720 52.381 5.01 0.00 42.10 3.27
31 32 1.556911 TCAAAGTGGAGGCCATCTCTC 59.443 52.381 5.01 0.00 42.10 3.20
32 33 1.280421 GTCAAAGTGGAGGCCATCTCT 59.720 52.381 5.01 0.00 42.10 3.10
33 34 1.680249 GGTCAAAGTGGAGGCCATCTC 60.680 57.143 5.01 0.00 41.71 2.75
34 35 0.329596 GGTCAAAGTGGAGGCCATCT 59.670 55.000 5.01 0.00 35.28 2.90
35 36 0.038166 TGGTCAAAGTGGAGGCCATC 59.962 55.000 5.01 0.00 35.28 3.51
36 37 0.706433 ATGGTCAAAGTGGAGGCCAT 59.294 50.000 5.01 0.00 35.28 4.40
37 38 0.251297 CATGGTCAAAGTGGAGGCCA 60.251 55.000 5.01 0.00 0.00 5.36
38 39 0.251341 ACATGGTCAAAGTGGAGGCC 60.251 55.000 0.00 0.00 0.00 5.19
39 40 1.270550 CAACATGGTCAAAGTGGAGGC 59.729 52.381 0.00 0.00 0.00 4.70
40 41 2.554032 GTCAACATGGTCAAAGTGGAGG 59.446 50.000 0.00 0.00 0.00 4.30
41 42 3.213506 TGTCAACATGGTCAAAGTGGAG 58.786 45.455 0.00 0.00 0.00 3.86
42 43 3.289407 TGTCAACATGGTCAAAGTGGA 57.711 42.857 0.00 0.00 0.00 4.02
43 44 3.381272 ACTTGTCAACATGGTCAAAGTGG 59.619 43.478 0.00 0.00 0.00 4.00
44 45 4.096231 TGACTTGTCAACATGGTCAAAGTG 59.904 41.667 6.90 0.00 36.65 3.16
45 46 4.269183 TGACTTGTCAACATGGTCAAAGT 58.731 39.130 13.38 0.00 36.65 2.66
46 47 4.898829 TGACTTGTCAACATGGTCAAAG 57.101 40.909 13.38 0.00 36.65 2.77
47 48 4.992688 GTTGACTTGTCAACATGGTCAAA 58.007 39.130 30.22 11.66 46.57 2.69
48 49 4.630894 GTTGACTTGTCAACATGGTCAA 57.369 40.909 30.22 19.11 46.57 3.18
72 73 1.557371 TGTTGACTGTTGACCAGGTCA 59.443 47.619 19.21 19.21 46.06 4.02
73 74 2.325583 TGTTGACTGTTGACCAGGTC 57.674 50.000 13.35 13.35 46.06 3.85
74 75 2.799126 TTGTTGACTGTTGACCAGGT 57.201 45.000 0.00 0.00 46.06 4.00
75 76 3.428862 GGTTTTGTTGACTGTTGACCAGG 60.429 47.826 0.00 0.00 46.06 4.45
77 78 2.494073 GGGTTTTGTTGACTGTTGACCA 59.506 45.455 0.00 0.00 0.00 4.02
78 79 2.159156 GGGGTTTTGTTGACTGTTGACC 60.159 50.000 0.00 0.00 0.00 4.02
79 80 2.159156 GGGGGTTTTGTTGACTGTTGAC 60.159 50.000 0.00 0.00 0.00 3.18
80 81 2.104170 GGGGGTTTTGTTGACTGTTGA 58.896 47.619 0.00 0.00 0.00 3.18
81 82 2.107366 AGGGGGTTTTGTTGACTGTTG 58.893 47.619 0.00 0.00 0.00 3.33
82 83 2.107366 CAGGGGGTTTTGTTGACTGTT 58.893 47.619 0.00 0.00 0.00 3.16
83 84 1.286553 TCAGGGGGTTTTGTTGACTGT 59.713 47.619 0.00 0.00 0.00 3.55
84 85 1.681264 GTCAGGGGGTTTTGTTGACTG 59.319 52.381 0.00 0.00 36.21 3.51
85 86 1.411074 GGTCAGGGGGTTTTGTTGACT 60.411 52.381 3.35 0.00 38.49 3.41
86 87 1.037493 GGTCAGGGGGTTTTGTTGAC 58.963 55.000 0.00 0.00 37.90 3.18
87 88 0.105913 GGGTCAGGGGGTTTTGTTGA 60.106 55.000 0.00 0.00 0.00 3.18
88 89 1.118965 GGGGTCAGGGGGTTTTGTTG 61.119 60.000 0.00 0.00 0.00 3.33
89 90 1.234820 GGGGTCAGGGGGTTTTGTT 59.765 57.895 0.00 0.00 0.00 2.83
90 91 1.595058 TTGGGGTCAGGGGGTTTTGT 61.595 55.000 0.00 0.00 0.00 2.83
91 92 0.178906 ATTGGGGTCAGGGGGTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
92 93 0.178906 CATTGGGGTCAGGGGGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
93 94 1.376249 ACATTGGGGTCAGGGGGTTT 61.376 55.000 0.00 0.00 0.00 3.27
94 95 1.782608 ACATTGGGGTCAGGGGGTT 60.783 57.895 0.00 0.00 0.00 4.11
95 96 2.121042 ACATTGGGGTCAGGGGGT 60.121 61.111 0.00 0.00 0.00 4.95
96 97 2.237965 TGACATTGGGGTCAGGGGG 61.238 63.158 0.00 0.00 42.56 5.40
97 98 3.506808 TGACATTGGGGTCAGGGG 58.493 61.111 0.00 0.00 42.56 4.79
102 103 2.292267 CTAGTGCATGACATTGGGGTC 58.708 52.381 0.00 0.00 38.29 4.46
103 104 1.064463 CCTAGTGCATGACATTGGGGT 60.064 52.381 0.00 0.00 33.52 4.95
104 105 1.683943 CCTAGTGCATGACATTGGGG 58.316 55.000 0.00 0.00 33.52 4.96
105 106 1.027357 GCCTAGTGCATGACATTGGG 58.973 55.000 0.00 3.85 39.36 4.12
106 107 2.048444 AGCCTAGTGCATGACATTGG 57.952 50.000 0.00 0.06 44.83 3.16
107 108 3.136763 CCTAGCCTAGTGCATGACATTG 58.863 50.000 0.00 0.00 44.83 2.82
108 109 2.486191 GCCTAGCCTAGTGCATGACATT 60.486 50.000 0.00 0.00 44.83 2.71
109 110 1.071385 GCCTAGCCTAGTGCATGACAT 59.929 52.381 0.00 0.00 44.83 3.06
110 111 0.465705 GCCTAGCCTAGTGCATGACA 59.534 55.000 0.00 0.00 44.83 3.58
111 112 0.465705 TGCCTAGCCTAGTGCATGAC 59.534 55.000 9.85 0.00 44.83 3.06
112 113 1.134401 GTTGCCTAGCCTAGTGCATGA 60.134 52.381 13.38 0.87 44.83 3.07
113 114 1.303309 GTTGCCTAGCCTAGTGCATG 58.697 55.000 13.38 0.00 44.83 4.06
114 115 0.181350 GGTTGCCTAGCCTAGTGCAT 59.819 55.000 13.38 0.00 44.83 3.96
115 116 1.602237 GGTTGCCTAGCCTAGTGCA 59.398 57.895 9.85 9.85 44.83 4.57
116 117 1.153147 GGGTTGCCTAGCCTAGTGC 60.153 63.158 0.00 1.97 41.39 4.40
117 118 0.839946 ATGGGTTGCCTAGCCTAGTG 59.160 55.000 0.00 0.00 45.03 2.74
118 119 0.839946 CATGGGTTGCCTAGCCTAGT 59.160 55.000 0.00 0.00 45.03 2.57
119 120 0.109342 CCATGGGTTGCCTAGCCTAG 59.891 60.000 2.85 0.00 45.03 3.02
120 121 1.352622 CCCATGGGTTGCCTAGCCTA 61.353 60.000 23.93 0.00 45.03 3.93
121 122 2.693871 CCCATGGGTTGCCTAGCCT 61.694 63.158 23.93 0.00 45.03 4.58
122 123 2.123726 CCCATGGGTTGCCTAGCC 60.124 66.667 23.93 0.00 45.01 3.93
139 140 1.692519 AGGTGGAATCGCTATGGGTAC 59.307 52.381 0.00 0.00 0.00 3.34
140 141 2.097110 AGGTGGAATCGCTATGGGTA 57.903 50.000 0.00 0.00 0.00 3.69
141 142 1.213296 AAGGTGGAATCGCTATGGGT 58.787 50.000 0.00 0.00 0.00 4.51
142 143 2.348411 AAAGGTGGAATCGCTATGGG 57.652 50.000 0.00 0.00 0.00 4.00
143 144 5.828299 TTTAAAAGGTGGAATCGCTATGG 57.172 39.130 0.00 0.00 0.00 2.74
144 145 6.632834 CGAATTTAAAAGGTGGAATCGCTATG 59.367 38.462 0.00 0.00 0.00 2.23
145 146 6.540914 TCGAATTTAAAAGGTGGAATCGCTAT 59.459 34.615 0.00 0.00 0.00 2.97
146 147 5.875910 TCGAATTTAAAAGGTGGAATCGCTA 59.124 36.000 0.00 0.00 0.00 4.26
147 148 4.698304 TCGAATTTAAAAGGTGGAATCGCT 59.302 37.500 0.00 0.00 0.00 4.93
148 149 4.976987 TCGAATTTAAAAGGTGGAATCGC 58.023 39.130 0.00 0.00 0.00 4.58
149 150 9.562583 TTAATTCGAATTTAAAAGGTGGAATCG 57.437 29.630 27.10 0.00 0.00 3.34
207 208 9.753674 TGGTTATCTTCTATGAATTTCCAAAGT 57.246 29.630 0.00 0.00 0.00 2.66
215 216 9.712305 CCGAGTTATGGTTATCTTCTATGAATT 57.288 33.333 0.00 0.00 0.00 2.17
216 217 9.090103 TCCGAGTTATGGTTATCTTCTATGAAT 57.910 33.333 0.00 0.00 0.00 2.57
217 218 8.473358 TCCGAGTTATGGTTATCTTCTATGAA 57.527 34.615 0.00 0.00 0.00 2.57
218 219 8.523658 CATCCGAGTTATGGTTATCTTCTATGA 58.476 37.037 0.00 0.00 0.00 2.15
219 220 8.523658 TCATCCGAGTTATGGTTATCTTCTATG 58.476 37.037 0.00 0.00 0.00 2.23
220 221 8.651589 TCATCCGAGTTATGGTTATCTTCTAT 57.348 34.615 0.00 0.00 0.00 1.98
221 222 8.473358 TTCATCCGAGTTATGGTTATCTTCTA 57.527 34.615 0.00 0.00 0.00 2.10
222 223 6.978674 TCATCCGAGTTATGGTTATCTTCT 57.021 37.500 0.00 0.00 0.00 2.85
223 224 8.433421 TTTTCATCCGAGTTATGGTTATCTTC 57.567 34.615 0.00 0.00 0.00 2.87
224 225 8.980481 ATTTTCATCCGAGTTATGGTTATCTT 57.020 30.769 0.00 0.00 0.00 2.40
264 265 8.338259 CGGATTCGTCTTATTTTCTGATCAATT 58.662 33.333 0.00 0.00 0.00 2.32
265 266 7.710907 TCGGATTCGTCTTATTTTCTGATCAAT 59.289 33.333 0.00 0.00 37.69 2.57
266 267 7.039270 TCGGATTCGTCTTATTTTCTGATCAA 58.961 34.615 0.00 0.00 37.69 2.57
267 268 6.569780 TCGGATTCGTCTTATTTTCTGATCA 58.430 36.000 0.00 0.00 37.69 2.92
268 269 7.464830 TTCGGATTCGTCTTATTTTCTGATC 57.535 36.000 0.00 0.00 37.69 2.92
269 270 9.712305 ATATTCGGATTCGTCTTATTTTCTGAT 57.288 29.630 0.00 0.00 37.69 2.90
270 271 8.978539 CATATTCGGATTCGTCTTATTTTCTGA 58.021 33.333 0.00 0.00 37.69 3.27
271 272 7.742089 GCATATTCGGATTCGTCTTATTTTCTG 59.258 37.037 0.00 0.00 37.69 3.02
272 273 7.095187 GGCATATTCGGATTCGTCTTATTTTCT 60.095 37.037 0.00 0.00 37.69 2.52
273 274 7.015877 GGCATATTCGGATTCGTCTTATTTTC 58.984 38.462 0.00 0.00 37.69 2.29
274 275 6.485313 TGGCATATTCGGATTCGTCTTATTTT 59.515 34.615 0.00 0.00 37.69 1.82
275 276 5.995282 TGGCATATTCGGATTCGTCTTATTT 59.005 36.000 0.00 0.00 37.69 1.40
276 277 5.408604 GTGGCATATTCGGATTCGTCTTATT 59.591 40.000 0.00 0.00 37.69 1.40
277 278 4.929808 GTGGCATATTCGGATTCGTCTTAT 59.070 41.667 0.00 0.00 37.69 1.73
278 279 4.304110 GTGGCATATTCGGATTCGTCTTA 58.696 43.478 0.00 0.00 37.69 2.10
279 280 3.131396 GTGGCATATTCGGATTCGTCTT 58.869 45.455 0.00 0.00 37.69 3.01
280 281 2.548067 GGTGGCATATTCGGATTCGTCT 60.548 50.000 0.00 0.00 37.69 4.18
281 282 1.798813 GGTGGCATATTCGGATTCGTC 59.201 52.381 0.00 0.00 37.69 4.20
282 283 1.542547 GGGTGGCATATTCGGATTCGT 60.543 52.381 0.00 0.00 37.69 3.85
283 284 1.156736 GGGTGGCATATTCGGATTCG 58.843 55.000 0.00 0.00 37.82 3.34
284 285 1.880027 GTGGGTGGCATATTCGGATTC 59.120 52.381 0.00 0.00 0.00 2.52
285 286 1.214175 TGTGGGTGGCATATTCGGATT 59.786 47.619 0.00 0.00 0.00 3.01
286 287 0.843309 TGTGGGTGGCATATTCGGAT 59.157 50.000 0.00 0.00 0.00 4.18
287 288 0.843309 ATGTGGGTGGCATATTCGGA 59.157 50.000 0.00 0.00 0.00 4.55
288 289 2.151202 GTATGTGGGTGGCATATTCGG 58.849 52.381 0.00 0.00 32.32 4.30
289 290 2.151202 GGTATGTGGGTGGCATATTCG 58.849 52.381 0.00 0.00 32.32 3.34
290 291 3.149196 CAGGTATGTGGGTGGCATATTC 58.851 50.000 0.00 0.00 32.32 1.75
291 292 2.513738 ACAGGTATGTGGGTGGCATATT 59.486 45.455 0.00 0.00 38.57 1.28
292 293 2.106511 GACAGGTATGTGGGTGGCATAT 59.893 50.000 0.00 0.00 40.68 1.78
293 294 1.488812 GACAGGTATGTGGGTGGCATA 59.511 52.381 0.00 0.00 40.68 3.14
294 295 0.255890 GACAGGTATGTGGGTGGCAT 59.744 55.000 0.00 0.00 40.68 4.40
295 296 1.130678 TGACAGGTATGTGGGTGGCA 61.131 55.000 0.00 0.00 40.68 4.92
296 297 0.676782 GTGACAGGTATGTGGGTGGC 60.677 60.000 0.00 0.00 40.68 5.01
297 298 0.690192 TGTGACAGGTATGTGGGTGG 59.310 55.000 0.00 0.00 40.68 4.61
298 299 2.358957 CATGTGACAGGTATGTGGGTG 58.641 52.381 0.00 0.00 40.68 4.61
299 300 1.340017 GCATGTGACAGGTATGTGGGT 60.340 52.381 0.00 0.00 40.68 4.51
300 301 1.382522 GCATGTGACAGGTATGTGGG 58.617 55.000 0.00 0.00 40.68 4.61
301 302 1.382522 GGCATGTGACAGGTATGTGG 58.617 55.000 0.00 0.00 40.68 4.17
302 303 1.382522 GGGCATGTGACAGGTATGTG 58.617 55.000 0.00 0.00 40.68 3.21
303 304 0.255890 GGGGCATGTGACAGGTATGT 59.744 55.000 0.00 0.00 44.31 2.29
304 305 0.466189 GGGGGCATGTGACAGGTATG 60.466 60.000 0.00 0.00 0.00 2.39
305 306 0.918799 TGGGGGCATGTGACAGGTAT 60.919 55.000 0.00 0.00 0.00 2.73
306 307 1.136961 TTGGGGGCATGTGACAGGTA 61.137 55.000 0.00 0.00 0.00 3.08
307 308 2.468868 TTGGGGGCATGTGACAGGT 61.469 57.895 0.00 0.00 0.00 4.00
308 309 1.978617 GTTGGGGGCATGTGACAGG 60.979 63.158 0.00 0.00 0.00 4.00
309 310 0.612732 ATGTTGGGGGCATGTGACAG 60.613 55.000 0.00 0.00 0.00 3.51
310 311 0.701147 TATGTTGGGGGCATGTGACA 59.299 50.000 0.00 0.00 0.00 3.58
311 312 1.392589 CTATGTTGGGGGCATGTGAC 58.607 55.000 0.00 0.00 0.00 3.67
312 313 0.395586 GCTATGTTGGGGGCATGTGA 60.396 55.000 0.00 0.00 0.00 3.58
313 314 0.683828 TGCTATGTTGGGGGCATGTG 60.684 55.000 0.00 0.00 0.00 3.21
314 315 0.040942 TTGCTATGTTGGGGGCATGT 59.959 50.000 0.00 0.00 34.59 3.21
315 316 1.134729 GTTTGCTATGTTGGGGGCATG 60.135 52.381 0.00 0.00 34.59 4.06
316 317 1.194218 GTTTGCTATGTTGGGGGCAT 58.806 50.000 0.00 0.00 34.59 4.40
317 318 0.178950 TGTTTGCTATGTTGGGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
318 319 1.134729 CATGTTTGCTATGTTGGGGGC 60.135 52.381 0.00 0.00 0.00 5.80
319 320 1.481772 CCATGTTTGCTATGTTGGGGG 59.518 52.381 0.00 0.00 0.00 5.40
320 321 2.455557 TCCATGTTTGCTATGTTGGGG 58.544 47.619 0.00 0.00 0.00 4.96
321 322 3.368323 GGTTCCATGTTTGCTATGTTGGG 60.368 47.826 0.00 0.00 0.00 4.12
322 323 3.511146 AGGTTCCATGTTTGCTATGTTGG 59.489 43.478 0.00 0.00 0.00 3.77
323 324 4.789012 AGGTTCCATGTTTGCTATGTTG 57.211 40.909 0.00 0.00 0.00 3.33
324 325 4.220602 GGAAGGTTCCATGTTTGCTATGTT 59.779 41.667 3.73 0.00 46.76 2.71
325 326 3.763897 GGAAGGTTCCATGTTTGCTATGT 59.236 43.478 3.73 0.00 46.76 2.29
326 327 4.376340 GGAAGGTTCCATGTTTGCTATG 57.624 45.455 3.73 0.00 46.76 2.23
338 339 0.624254 AAATCGGAGGGGAAGGTTCC 59.376 55.000 0.00 0.00 46.82 3.62
339 340 1.004394 ACAAATCGGAGGGGAAGGTTC 59.996 52.381 0.00 0.00 0.00 3.62
340 341 1.004394 GACAAATCGGAGGGGAAGGTT 59.996 52.381 0.00 0.00 0.00 3.50
341 342 0.618981 GACAAATCGGAGGGGAAGGT 59.381 55.000 0.00 0.00 0.00 3.50
342 343 0.912486 AGACAAATCGGAGGGGAAGG 59.088 55.000 0.00 0.00 0.00 3.46
343 344 1.555075 TCAGACAAATCGGAGGGGAAG 59.445 52.381 0.00 0.00 0.00 3.46
344 345 1.278127 GTCAGACAAATCGGAGGGGAA 59.722 52.381 0.00 0.00 28.89 3.97
345 346 0.902531 GTCAGACAAATCGGAGGGGA 59.097 55.000 0.00 0.00 28.89 4.81
346 347 0.107654 GGTCAGACAAATCGGAGGGG 60.108 60.000 2.17 0.00 28.89 4.79
347 348 0.460284 CGGTCAGACAAATCGGAGGG 60.460 60.000 2.17 0.00 28.89 4.30
348 349 0.530744 TCGGTCAGACAAATCGGAGG 59.469 55.000 2.17 0.00 28.89 4.30
349 350 2.586258 ATCGGTCAGACAAATCGGAG 57.414 50.000 2.17 0.00 28.89 4.63
350 351 4.459390 TTTATCGGTCAGACAAATCGGA 57.541 40.909 2.17 0.00 0.00 4.55
351 352 4.552767 GCATTTATCGGTCAGACAAATCGG 60.553 45.833 2.17 0.00 34.02 4.18
352 353 4.271049 AGCATTTATCGGTCAGACAAATCG 59.729 41.667 2.17 0.00 34.02 3.34
353 354 5.741388 AGCATTTATCGGTCAGACAAATC 57.259 39.130 2.17 0.00 34.02 2.17
354 355 7.047891 TCTAAGCATTTATCGGTCAGACAAAT 58.952 34.615 2.17 0.00 36.48 2.32
355 356 6.403049 TCTAAGCATTTATCGGTCAGACAAA 58.597 36.000 2.17 0.00 28.89 2.83
356 357 5.972935 TCTAAGCATTTATCGGTCAGACAA 58.027 37.500 2.17 0.00 0.00 3.18
357 358 5.127194 ACTCTAAGCATTTATCGGTCAGACA 59.873 40.000 2.17 0.00 0.00 3.41
358 359 5.593010 ACTCTAAGCATTTATCGGTCAGAC 58.407 41.667 0.00 0.00 0.00 3.51
359 360 5.505819 CGACTCTAAGCATTTATCGGTCAGA 60.506 44.000 0.00 0.00 0.00 3.27
360 361 4.677378 CGACTCTAAGCATTTATCGGTCAG 59.323 45.833 0.00 0.00 0.00 3.51
361 362 4.499188 CCGACTCTAAGCATTTATCGGTCA 60.499 45.833 0.00 0.00 42.05 4.02
362 363 3.982058 CCGACTCTAAGCATTTATCGGTC 59.018 47.826 0.00 0.00 42.05 4.79
363 364 3.243771 CCCGACTCTAAGCATTTATCGGT 60.244 47.826 8.76 0.00 44.77 4.69
364 365 3.005472 TCCCGACTCTAAGCATTTATCGG 59.995 47.826 2.83 2.83 45.59 4.18
365 366 4.238761 TCCCGACTCTAAGCATTTATCG 57.761 45.455 0.00 0.00 0.00 2.92
366 367 6.920569 TTTTCCCGACTCTAAGCATTTATC 57.079 37.500 0.00 0.00 0.00 1.75
367 368 9.574516 AATATTTTCCCGACTCTAAGCATTTAT 57.425 29.630 0.00 0.00 0.00 1.40
368 369 8.974060 AATATTTTCCCGACTCTAAGCATTTA 57.026 30.769 0.00 0.00 0.00 1.40
369 370 7.881775 AATATTTTCCCGACTCTAAGCATTT 57.118 32.000 0.00 0.00 0.00 2.32
370 371 7.013369 GGAAATATTTTCCCGACTCTAAGCATT 59.987 37.037 1.43 0.00 32.48 3.56
371 372 6.486993 GGAAATATTTTCCCGACTCTAAGCAT 59.513 38.462 1.43 0.00 32.48 3.79
372 373 5.820947 GGAAATATTTTCCCGACTCTAAGCA 59.179 40.000 1.43 0.00 32.48 3.91
373 374 5.050295 CGGAAATATTTTCCCGACTCTAAGC 60.050 44.000 18.76 0.00 44.29 3.09
374 375 6.278363 TCGGAAATATTTTCCCGACTCTAAG 58.722 40.000 21.03 0.00 45.04 2.18
375 376 6.224665 TCGGAAATATTTTCCCGACTCTAA 57.775 37.500 21.03 4.64 45.04 2.10
376 377 5.857471 TCGGAAATATTTTCCCGACTCTA 57.143 39.130 21.03 5.21 45.04 2.43
377 378 4.748277 TCGGAAATATTTTCCCGACTCT 57.252 40.909 21.03 0.00 45.04 3.24
385 386 8.406297 AGCAGGAAAGTATTCGGAAATATTTTC 58.594 33.333 1.43 13.46 44.84 2.29
386 387 8.293699 AGCAGGAAAGTATTCGGAAATATTTT 57.706 30.769 1.43 0.00 38.95 1.82
387 388 7.013369 GGAGCAGGAAAGTATTCGGAAATATTT 59.987 37.037 0.00 0.00 36.36 1.40
388 389 6.486993 GGAGCAGGAAAGTATTCGGAAATATT 59.513 38.462 0.00 0.00 36.36 1.28
389 390 5.998363 GGAGCAGGAAAGTATTCGGAAATAT 59.002 40.000 0.00 0.00 36.36 1.28
390 391 5.104693 TGGAGCAGGAAAGTATTCGGAAATA 60.105 40.000 0.00 0.00 36.36 1.40
391 392 4.200092 GGAGCAGGAAAGTATTCGGAAAT 58.800 43.478 0.00 0.00 36.36 2.17
392 393 3.008594 TGGAGCAGGAAAGTATTCGGAAA 59.991 43.478 0.00 0.00 36.36 3.13
393 394 2.569853 TGGAGCAGGAAAGTATTCGGAA 59.430 45.455 0.00 0.00 36.36 4.30
394 395 2.184533 TGGAGCAGGAAAGTATTCGGA 58.815 47.619 0.00 0.00 36.36 4.55
395 396 2.691409 TGGAGCAGGAAAGTATTCGG 57.309 50.000 0.00 0.00 36.36 4.30
396 397 4.253685 TCTTTGGAGCAGGAAAGTATTCG 58.746 43.478 0.00 0.00 36.36 3.34
397 398 5.106118 GGTTCTTTGGAGCAGGAAAGTATTC 60.106 44.000 0.00 0.00 32.11 1.75
398 399 4.767409 GGTTCTTTGGAGCAGGAAAGTATT 59.233 41.667 0.00 0.00 32.11 1.89
399 400 4.336280 GGTTCTTTGGAGCAGGAAAGTAT 58.664 43.478 0.00 0.00 32.11 2.12
400 401 3.751518 GGTTCTTTGGAGCAGGAAAGTA 58.248 45.455 0.00 0.00 32.11 2.24
401 402 2.587522 GGTTCTTTGGAGCAGGAAAGT 58.412 47.619 0.00 0.00 32.11 2.66
402 403 1.537202 CGGTTCTTTGGAGCAGGAAAG 59.463 52.381 0.00 0.00 0.00 2.62
403 404 1.142060 TCGGTTCTTTGGAGCAGGAAA 59.858 47.619 0.00 0.00 0.00 3.13
404 405 0.762418 TCGGTTCTTTGGAGCAGGAA 59.238 50.000 0.00 0.00 0.00 3.36
405 406 0.762418 TTCGGTTCTTTGGAGCAGGA 59.238 50.000 0.00 0.00 0.00 3.86
406 407 1.160137 CTTCGGTTCTTTGGAGCAGG 58.840 55.000 0.00 0.00 0.00 4.85
407 408 1.160137 CCTTCGGTTCTTTGGAGCAG 58.840 55.000 0.00 0.00 0.00 4.24
408 409 0.889186 GCCTTCGGTTCTTTGGAGCA 60.889 55.000 0.00 0.00 0.00 4.26
409 410 1.876664 GCCTTCGGTTCTTTGGAGC 59.123 57.895 0.00 0.00 0.00 4.70
410 411 2.162716 CGCCTTCGGTTCTTTGGAG 58.837 57.895 0.00 0.00 0.00 3.86
411 412 4.371975 CGCCTTCGGTTCTTTGGA 57.628 55.556 0.00 0.00 0.00 3.53
428 429 4.459089 GTCCCAGACCGAGCAGCC 62.459 72.222 0.00 0.00 0.00 4.85
429 430 4.803426 CGTCCCAGACCGAGCAGC 62.803 72.222 0.00 0.00 0.00 5.25
430 431 3.343788 GACGTCCCAGACCGAGCAG 62.344 68.421 3.51 0.00 0.00 4.24
431 432 3.371063 GACGTCCCAGACCGAGCA 61.371 66.667 3.51 0.00 0.00 4.26
432 433 2.615262 GATGACGTCCCAGACCGAGC 62.615 65.000 14.12 0.00 0.00 5.03
433 434 1.032657 AGATGACGTCCCAGACCGAG 61.033 60.000 14.12 0.00 0.00 4.63
434 435 0.253894 TAGATGACGTCCCAGACCGA 59.746 55.000 14.12 0.00 0.00 4.69
435 436 0.663688 CTAGATGACGTCCCAGACCG 59.336 60.000 14.12 0.00 0.00 4.79
436 437 1.765230 ACTAGATGACGTCCCAGACC 58.235 55.000 14.12 0.00 0.00 3.85
437 438 3.870633 AAACTAGATGACGTCCCAGAC 57.129 47.619 14.12 0.00 0.00 3.51
438 439 5.198207 TGATAAACTAGATGACGTCCCAGA 58.802 41.667 14.12 0.00 0.00 3.86
439 440 5.515797 TGATAAACTAGATGACGTCCCAG 57.484 43.478 14.12 7.14 0.00 4.45
440 441 7.002276 TCTATGATAAACTAGATGACGTCCCA 58.998 38.462 14.12 0.00 0.00 4.37
441 442 7.450124 TCTATGATAAACTAGATGACGTCCC 57.550 40.000 14.12 4.95 0.00 4.46
449 450 8.874156 TGGTTCAGCATCTATGATAAACTAGAT 58.126 33.333 0.00 0.00 35.55 1.98
450 451 8.250143 TGGTTCAGCATCTATGATAAACTAGA 57.750 34.615 0.00 0.00 0.00 2.43
451 452 8.893219 TTGGTTCAGCATCTATGATAAACTAG 57.107 34.615 0.00 0.00 0.00 2.57
452 453 9.851686 ATTTGGTTCAGCATCTATGATAAACTA 57.148 29.630 0.00 0.00 0.00 2.24
453 454 8.757982 ATTTGGTTCAGCATCTATGATAAACT 57.242 30.769 0.00 0.00 0.00 2.66
454 455 8.078596 GGATTTGGTTCAGCATCTATGATAAAC 58.921 37.037 0.00 0.00 0.00 2.01
455 456 8.000709 AGGATTTGGTTCAGCATCTATGATAAA 58.999 33.333 0.00 0.00 0.00 1.40
456 457 7.446319 CAGGATTTGGTTCAGCATCTATGATAA 59.554 37.037 0.00 0.00 0.00 1.75
457 458 6.938596 CAGGATTTGGTTCAGCATCTATGATA 59.061 38.462 0.00 0.00 0.00 2.15
458 459 5.768662 CAGGATTTGGTTCAGCATCTATGAT 59.231 40.000 0.00 0.00 0.00 2.45
459 460 5.128205 CAGGATTTGGTTCAGCATCTATGA 58.872 41.667 0.00 0.00 0.00 2.15
460 461 4.885907 ACAGGATTTGGTTCAGCATCTATG 59.114 41.667 0.00 0.00 0.00 2.23
461 462 4.885907 CACAGGATTTGGTTCAGCATCTAT 59.114 41.667 0.00 0.00 0.00 1.98
462 463 4.019411 TCACAGGATTTGGTTCAGCATCTA 60.019 41.667 0.00 0.00 0.00 1.98
463 464 3.087031 CACAGGATTTGGTTCAGCATCT 58.913 45.455 0.00 0.00 0.00 2.90
464 465 3.084039 TCACAGGATTTGGTTCAGCATC 58.916 45.455 0.00 0.00 0.00 3.91
465 466 3.159213 TCACAGGATTTGGTTCAGCAT 57.841 42.857 0.00 0.00 0.00 3.79
466 467 2.655090 TCACAGGATTTGGTTCAGCA 57.345 45.000 0.00 0.00 0.00 4.41
538 539 8.599774 CCCGCGAATTTAATTTGTAAATTGATT 58.400 29.630 8.23 11.04 38.90 2.57
539 540 7.976734 TCCCGCGAATTTAATTTGTAAATTGAT 59.023 29.630 8.23 4.59 38.90 2.57
540 541 7.313646 TCCCGCGAATTTAATTTGTAAATTGA 58.686 30.769 8.23 2.30 38.90 2.57
541 542 7.513190 TCCCGCGAATTTAATTTGTAAATTG 57.487 32.000 8.23 3.90 38.90 2.32
542 543 7.201367 CGTTCCCGCGAATTTAATTTGTAAATT 60.201 33.333 8.23 7.62 41.24 1.82
543 544 6.251801 CGTTCCCGCGAATTTAATTTGTAAAT 59.748 34.615 8.23 0.00 0.00 1.40
544 545 5.568296 CGTTCCCGCGAATTTAATTTGTAAA 59.432 36.000 8.23 0.00 0.00 2.01
545 546 5.087397 CGTTCCCGCGAATTTAATTTGTAA 58.913 37.500 8.23 0.00 0.00 2.41
546 547 4.437121 CCGTTCCCGCGAATTTAATTTGTA 60.437 41.667 8.23 0.00 0.00 2.41
547 548 3.494232 CGTTCCCGCGAATTTAATTTGT 58.506 40.909 8.23 0.00 0.00 2.83
548 549 2.849473 CCGTTCCCGCGAATTTAATTTG 59.151 45.455 8.23 0.72 0.00 2.32
549 550 2.488937 ACCGTTCCCGCGAATTTAATTT 59.511 40.909 8.23 0.00 0.00 1.82
550 551 2.086094 ACCGTTCCCGCGAATTTAATT 58.914 42.857 8.23 0.00 0.00 1.40
551 552 1.741528 ACCGTTCCCGCGAATTTAAT 58.258 45.000 8.23 0.00 0.00 1.40
552 553 1.521580 AACCGTTCCCGCGAATTTAA 58.478 45.000 8.23 0.00 0.00 1.52
553 554 2.376808 TAACCGTTCCCGCGAATTTA 57.623 45.000 8.23 0.00 0.00 1.40
554 555 1.399089 CATAACCGTTCCCGCGAATTT 59.601 47.619 8.23 0.00 0.00 1.82
555 556 1.011333 CATAACCGTTCCCGCGAATT 58.989 50.000 8.23 0.00 0.00 2.17
556 557 0.812412 CCATAACCGTTCCCGCGAAT 60.812 55.000 8.23 0.00 0.00 3.34
557 558 1.448189 CCATAACCGTTCCCGCGAA 60.448 57.895 8.23 0.00 0.00 4.70
558 559 2.184836 CCATAACCGTTCCCGCGA 59.815 61.111 8.23 0.00 0.00 5.87
559 560 2.893404 CCCATAACCGTTCCCGCG 60.893 66.667 0.00 0.00 0.00 6.46
560 561 3.206957 GCCCATAACCGTTCCCGC 61.207 66.667 0.00 0.00 0.00 6.13
561 562 1.817941 CAGCCCATAACCGTTCCCG 60.818 63.158 0.00 0.00 0.00 5.14
562 563 1.453197 CCAGCCCATAACCGTTCCC 60.453 63.158 0.00 0.00 0.00 3.97
563 564 2.119029 GCCAGCCCATAACCGTTCC 61.119 63.158 0.00 0.00 0.00 3.62
564 565 2.119029 GGCCAGCCCATAACCGTTC 61.119 63.158 0.00 0.00 0.00 3.95
565 566 2.044352 GGCCAGCCCATAACCGTT 60.044 61.111 0.00 0.00 0.00 4.44
566 567 4.483243 CGGCCAGCCCATAACCGT 62.483 66.667 2.24 0.00 39.05 4.83
567 568 2.958578 AATCGGCCAGCCCATAACCG 62.959 60.000 2.24 0.00 45.15 4.44
568 569 0.755327 AAATCGGCCAGCCCATAACC 60.755 55.000 2.24 0.00 0.00 2.85
569 570 0.385390 CAAATCGGCCAGCCCATAAC 59.615 55.000 2.24 0.00 0.00 1.89
570 571 0.257328 TCAAATCGGCCAGCCCATAA 59.743 50.000 2.24 0.00 0.00 1.90
571 572 0.465460 GTCAAATCGGCCAGCCCATA 60.465 55.000 2.24 0.00 0.00 2.74
572 573 1.754234 GTCAAATCGGCCAGCCCAT 60.754 57.895 2.24 0.00 0.00 4.00
573 574 2.361104 GTCAAATCGGCCAGCCCA 60.361 61.111 2.24 0.00 0.00 5.36
574 575 1.250840 AAAGTCAAATCGGCCAGCCC 61.251 55.000 2.24 0.00 0.00 5.19
575 576 0.603065 AAAAGTCAAATCGGCCAGCC 59.397 50.000 2.24 0.00 0.00 4.85
576 577 2.061028 CAAAAAGTCAAATCGGCCAGC 58.939 47.619 2.24 0.00 0.00 4.85
577 578 3.308530 GACAAAAAGTCAAATCGGCCAG 58.691 45.455 2.24 0.00 46.77 4.85
578 579 3.363341 GACAAAAAGTCAAATCGGCCA 57.637 42.857 2.24 0.00 46.77 5.36
588 589 0.961753 CCAGGCAGGGACAAAAAGTC 59.038 55.000 0.00 0.00 46.83 3.01
589 590 0.555769 TCCAGGCAGGGACAAAAAGT 59.444 50.000 0.00 0.00 38.24 2.66
590 591 1.251251 CTCCAGGCAGGGACAAAAAG 58.749 55.000 0.00 0.00 38.24 2.27
591 592 0.827507 GCTCCAGGCAGGGACAAAAA 60.828 55.000 0.00 0.00 41.35 1.94
592 593 1.228552 GCTCCAGGCAGGGACAAAA 60.229 57.895 0.00 0.00 41.35 2.44
593 594 2.436109 GCTCCAGGCAGGGACAAA 59.564 61.111 0.00 0.00 41.35 2.83
607 608 1.509004 GACCACGGAGAGAGTGCTC 59.491 63.158 0.00 0.00 41.62 4.26
608 609 2.336478 CGACCACGGAGAGAGTGCT 61.336 63.158 0.00 0.00 38.22 4.40
609 610 2.179517 CGACCACGGAGAGAGTGC 59.820 66.667 0.00 0.00 38.22 4.40
619 620 0.250166 AAAAGAGGAACCCGACCACG 60.250 55.000 0.00 0.00 39.43 4.94
620 621 1.235724 CAAAAGAGGAACCCGACCAC 58.764 55.000 0.00 0.00 0.00 4.16
621 622 0.841289 ACAAAAGAGGAACCCGACCA 59.159 50.000 0.00 0.00 0.00 4.02
622 623 1.235724 CACAAAAGAGGAACCCGACC 58.764 55.000 0.00 0.00 0.00 4.79
623 624 1.235724 CCACAAAAGAGGAACCCGAC 58.764 55.000 0.00 0.00 0.00 4.79
624 625 0.109723 CCCACAAAAGAGGAACCCGA 59.890 55.000 0.00 0.00 0.00 5.14
625 626 1.524008 GCCCACAAAAGAGGAACCCG 61.524 60.000 0.00 0.00 0.00 5.28
626 627 1.185618 GGCCCACAAAAGAGGAACCC 61.186 60.000 0.00 0.00 0.00 4.11
627 628 1.524008 CGGCCCACAAAAGAGGAACC 61.524 60.000 0.00 0.00 0.00 3.62
628 629 0.822121 ACGGCCCACAAAAGAGGAAC 60.822 55.000 0.00 0.00 0.00 3.62
629 630 0.821711 CACGGCCCACAAAAGAGGAA 60.822 55.000 0.00 0.00 0.00 3.36
630 631 1.228124 CACGGCCCACAAAAGAGGA 60.228 57.895 0.00 0.00 0.00 3.71
631 632 2.919494 GCACGGCCCACAAAAGAGG 61.919 63.158 0.00 0.00 0.00 3.69
632 633 2.644992 GCACGGCCCACAAAAGAG 59.355 61.111 0.00 0.00 0.00 2.85
633 634 3.283684 CGCACGGCCCACAAAAGA 61.284 61.111 0.00 0.00 0.00 2.52
634 635 3.591835 ACGCACGGCCCACAAAAG 61.592 61.111 0.00 0.00 0.00 2.27
635 636 3.893763 CACGCACGGCCCACAAAA 61.894 61.111 0.00 0.00 0.00 2.44
648 649 4.724602 TCTGCAGTCGGAGCACGC 62.725 66.667 14.67 0.00 43.86 5.34
649 650 2.276863 ATCTCTGCAGTCGGAGCACG 62.277 60.000 14.67 0.00 43.78 5.34
650 651 0.527385 GATCTCTGCAGTCGGAGCAC 60.527 60.000 14.67 4.00 43.78 4.40
651 652 0.967380 TGATCTCTGCAGTCGGAGCA 60.967 55.000 14.67 15.66 43.78 4.26
652 653 0.388659 ATGATCTCTGCAGTCGGAGC 59.611 55.000 14.67 13.37 43.78 4.70
653 654 2.886862 AATGATCTCTGCAGTCGGAG 57.113 50.000 14.67 3.78 45.13 4.63
654 655 3.055891 TCAAAATGATCTCTGCAGTCGGA 60.056 43.478 14.67 11.01 0.00 4.55
655 656 3.264947 TCAAAATGATCTCTGCAGTCGG 58.735 45.455 14.67 5.72 0.00 4.79
661 662 2.031437 GGCGTCTCAAAATGATCTCTGC 59.969 50.000 0.00 0.00 0.00 4.26
716 717 4.736896 GACAGGGACGTGGTCGCC 62.737 72.222 8.91 2.89 44.82 5.54
1076 1078 1.453148 GAGAACGTACGTTGTTTCCGG 59.547 52.381 36.11 0.00 38.60 5.14
1161 1163 2.665537 GCATAGAGCGCATCTGTACATC 59.334 50.000 11.47 0.00 39.20 3.06
1252 1257 4.256920 CCCATTCTGACTAACTCCACAAG 58.743 47.826 0.00 0.00 0.00 3.16
1376 1381 1.200948 AGTACGAGGTAAACTGGCGAC 59.799 52.381 0.00 0.00 0.00 5.19
1476 1481 5.076873 CCAAACTTTCATTTCTCTGGGGTA 58.923 41.667 0.00 0.00 0.00 3.69
1485 1490 6.765512 TCCAAATGGAACCAAACTTTCATTTC 59.234 34.615 0.00 0.00 42.18 2.17
1652 1658 6.276091 TCATAGAGACAAAGACCAATCATCG 58.724 40.000 0.00 0.00 0.00 3.84
1752 1789 8.353423 ACTTTGCATAGTTTCATTTCACCTAT 57.647 30.769 3.73 0.00 0.00 2.57
1846 1883 8.900511 AAATCATCGTTATCAACTTGAACATG 57.099 30.769 0.00 0.00 0.00 3.21
1879 1916 3.069443 GGCTTGGATGTCAGGAAACAAAA 59.931 43.478 0.00 0.00 31.81 2.44
1989 2026 7.038531 AGGTCCATCATATCTAAGAGCTAGA 57.961 40.000 0.00 0.00 41.00 2.43
2082 2119 9.632638 AATATCAAGCCATATGTACAGAAAAGT 57.367 29.630 0.33 0.00 0.00 2.66
2306 2343 3.043586 CAGTCGTACAGCCTAAATAGCG 58.956 50.000 0.00 0.00 34.64 4.26
2372 2409 3.389221 ACAAAATTCGGCAAATGTGGTC 58.611 40.909 0.00 0.00 0.00 4.02
2527 2564 6.656693 CAGGAAAGTCATTTATGAGGTGTCTT 59.343 38.462 0.00 0.00 37.51 3.01
2602 2639 8.575565 AATTGTGATGTACTAGTATGCTTACG 57.424 34.615 5.75 0.00 33.32 3.18
2667 2704 4.141482 TGTGAACAGAGGGAGTAGCTTTTT 60.141 41.667 0.00 0.00 0.00 1.94
2719 2756 3.955771 TGTAAGACGTTTTGGCAGTTC 57.044 42.857 0.83 0.00 0.00 3.01
2781 2904 1.178534 ACAAAGAACCATGGCCGGTG 61.179 55.000 13.04 9.88 39.95 4.94
2826 2978 5.916661 AGAAGTAGCGTCAAATCCTAGAA 57.083 39.130 0.00 0.00 0.00 2.10
2901 3054 2.846206 TCCCATAGATGCTTTCAGGTGT 59.154 45.455 0.00 0.00 0.00 4.16
2902 3055 3.474600 CTCCCATAGATGCTTTCAGGTG 58.525 50.000 0.00 0.00 0.00 4.00
2992 3145 6.430000 GGTGTCACAATACTTAACCTTCACAT 59.570 38.462 5.12 0.00 0.00 3.21
3035 3188 0.671781 AACAGTGTGAGCATCGAGGC 60.672 55.000 15.45 15.45 38.61 4.70
3352 3517 0.250124 TGTACACCCAACAGAAGGCG 60.250 55.000 0.00 0.00 0.00 5.52
3397 3562 1.337118 TTGCCCTCCCAATTGACAAC 58.663 50.000 7.12 0.00 0.00 3.32
3437 3602 7.920738 AGAAAACAGTAGACAATCAGAACAAC 58.079 34.615 0.00 0.00 0.00 3.32
3587 3753 7.827729 AGTTGTCTACAAAGGAAATGGGTATAC 59.172 37.037 0.00 0.00 37.63 1.47
3727 3894 0.108615 CTACTGTGACTCTTGCCCGG 60.109 60.000 0.00 0.00 0.00 5.73
3742 3909 4.561734 GCTTGTTCTACACCTTGCTCTACT 60.562 45.833 0.00 0.00 0.00 2.57
3783 3950 2.112998 CCATGTTGGGGCTCATGAAAT 58.887 47.619 0.00 0.00 42.52 2.17
3816 3983 4.677250 GCTTCTTGCCCATTTCAAGATCTG 60.677 45.833 0.00 0.00 46.26 2.90
3875 4042 1.270678 ACCTACTTCCAAGTCGCCAAC 60.271 52.381 0.00 0.00 40.37 3.77
3929 4096 0.846015 TCTGGGGATGCATGGGTTAG 59.154 55.000 2.46 0.00 0.00 2.34
3972 4139 2.436109 GGCCTTCCACAAGCTCCA 59.564 61.111 0.00 0.00 0.00 3.86
4081 4248 0.755686 CGCTCCCATTAGCTTCCTCT 59.244 55.000 0.00 0.00 40.49 3.69
4097 4264 0.102481 CTCGTAGTAACATGGCCGCT 59.898 55.000 0.00 0.00 0.00 5.52
4146 4315 4.672024 GCAGAGCTCAAATGTTCATCTGTG 60.672 45.833 17.77 0.80 36.07 3.66
4279 4448 2.359169 GGTCTGATGCACCTCCGGA 61.359 63.158 2.93 2.93 0.00 5.14
4284 4453 0.396435 TTGAACGGTCTGATGCACCT 59.604 50.000 0.33 0.00 0.00 4.00
4966 5165 9.706691 ATTCTGAAACTTTACTCATTTAGTCGA 57.293 29.630 0.00 0.00 39.80 4.20
4975 5174 8.559536 GTGATGTGAATTCTGAAACTTTACTCA 58.440 33.333 7.05 0.00 0.00 3.41
4976 5175 8.778358 AGTGATGTGAATTCTGAAACTTTACTC 58.222 33.333 7.05 0.00 0.00 2.59
4977 5176 8.682936 AGTGATGTGAATTCTGAAACTTTACT 57.317 30.769 7.05 4.50 0.00 2.24
4978 5177 9.736023 AAAGTGATGTGAATTCTGAAACTTTAC 57.264 29.630 17.41 9.19 34.52 2.01
4998 5204 9.130661 TCAAATGGACTAGATTTTCAAAAGTGA 57.869 29.630 0.00 0.00 0.00 3.41
5021 5227 4.789481 GCAGCTCGACAAGAAACAAATCAA 60.789 41.667 0.00 0.00 0.00 2.57
5037 5243 3.047796 GGCAAATATTGAATGCAGCTCG 58.952 45.455 11.64 0.00 41.80 5.03
5039 5245 3.181469 CCTGGCAAATATTGAATGCAGCT 60.181 43.478 11.64 0.00 41.80 4.24
5050 5256 4.821532 ATTTCCTCTCCCTGGCAAATAT 57.178 40.909 0.00 0.00 0.00 1.28
5059 5265 1.272704 GGGCACAAATTTCCTCTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
5080 5286 5.324409 ACATCCTTATTCCAAGCAGACAAA 58.676 37.500 0.00 0.00 0.00 2.83
5092 5298 7.332678 AGCAATTTTTGAGCAACATCCTTATTC 59.667 33.333 0.00 0.00 0.00 1.75
5124 5330 5.408356 CGTCTGCAAAGTAGTAGTGGTAAT 58.592 41.667 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.