Multiple sequence alignment - TraesCS7D01G263000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G263000 chr7D 100.000 4443 0 0 1 4443 242775723 242780165 0.000000e+00 8205.0
1 TraesCS7D01G263000 chr7D 80.288 208 33 7 2196 2399 404239181 404238978 2.770000e-32 150.0
2 TraesCS7D01G263000 chr7A 91.428 2858 164 44 847 3659 254903267 254900446 0.000000e+00 3845.0
3 TraesCS7D01G263000 chr7A 92.568 148 11 0 4262 4409 254900329 254900182 3.480000e-51 213.0
4 TraesCS7D01G263000 chr7A 95.652 92 4 0 1 92 34217585 34217676 9.960000e-32 148.0
5 TraesCS7D01G263000 chr7B 94.612 2060 54 22 1621 3644 218537435 218539473 0.000000e+00 3136.0
6 TraesCS7D01G263000 chr7B 95.400 1000 25 10 612 1593 218536301 218537297 0.000000e+00 1572.0
7 TraesCS7D01G263000 chr7B 91.054 313 11 7 293 600 218535665 218535965 1.490000e-109 407.0
8 TraesCS7D01G263000 chr7B 86.198 384 29 10 3709 4084 218544116 218544483 1.160000e-105 394.0
9 TraesCS7D01G263000 chr7B 90.123 162 4 1 4294 4443 218545475 218545636 2.710000e-47 200.0
10 TraesCS7D01G263000 chr7B 89.189 111 10 2 1 110 25891196 25891087 2.160000e-28 137.0
11 TraesCS7D01G263000 chr7B 97.674 43 1 0 3786 3828 255075442 255075400 1.710000e-09 75.0
12 TraesCS7D01G263000 chr6D 89.536 2026 115 48 1188 3164 27735758 27733781 0.000000e+00 2477.0
13 TraesCS7D01G263000 chr6D 80.966 1014 125 43 2480 3448 13092447 13093437 0.000000e+00 741.0
14 TraesCS7D01G263000 chr6D 89.362 423 29 10 3199 3612 27733782 27733367 6.590000e-143 518.0
15 TraesCS7D01G263000 chr6D 91.531 307 23 2 856 1161 27736049 27735745 1.910000e-113 420.0
16 TraesCS7D01G263000 chr6B 79.516 1323 177 61 2184 3444 23646334 23645044 0.000000e+00 856.0
17 TraesCS7D01G263000 chr6B 82.474 485 33 23 109 583 80978811 80978369 1.170000e-100 377.0
18 TraesCS7D01G263000 chr3B 85.627 654 48 17 109 751 424132251 424131633 0.000000e+00 645.0
19 TraesCS7D01G263000 chr2B 87.037 594 40 7 109 692 154247410 154247976 1.740000e-178 636.0
20 TraesCS7D01G263000 chr2B 95.745 47 2 0 3786 3832 134045498 134045452 4.770000e-10 76.8
21 TraesCS7D01G263000 chr2B 97.674 43 1 0 3786 3828 651362573 651362531 1.710000e-09 75.0
22 TraesCS7D01G263000 chr6A 87.900 438 44 8 3015 3448 14370941 14371373 1.430000e-139 507.0
23 TraesCS7D01G263000 chr6A 78.807 637 103 22 2236 2857 14370186 14370805 2.490000e-107 399.0
24 TraesCS7D01G263000 chr6A 79.150 494 81 16 961 1443 14369207 14369689 5.540000e-84 322.0
25 TraesCS7D01G263000 chr6A 95.556 45 2 0 3786 3830 427446054 427446098 6.160000e-09 73.1
26 TraesCS7D01G263000 chr1B 82.276 615 46 23 109 702 642193237 642192665 1.450000e-129 473.0
27 TraesCS7D01G263000 chr1B 78.829 222 38 7 2184 2399 572150433 572150651 1.670000e-29 141.0
28 TraesCS7D01G263000 chr5B 80.827 532 46 13 109 630 123695544 123696029 2.530000e-97 366.0
29 TraesCS7D01G263000 chr4B 86.728 324 21 2 428 751 274043895 274044196 1.530000e-89 340.0
30 TraesCS7D01G263000 chr4B 95.699 93 4 0 1 93 40472257 40472349 2.770000e-32 150.0
31 TraesCS7D01G263000 chr5D 97.826 92 2 0 1 92 330717466 330717375 4.600000e-35 159.0
32 TraesCS7D01G263000 chr5D 80.288 208 34 6 2196 2399 108957628 108957424 2.770000e-32 150.0
33 TraesCS7D01G263000 chr5D 94.737 95 5 0 1 95 87803444 87803350 9.960000e-32 148.0
34 TraesCS7D01G263000 chr5D 89.474 57 6 0 3773 3829 314384685 314384629 6.160000e-09 73.1
35 TraesCS7D01G263000 chr5D 97.143 35 1 0 3397 3431 167857744 167857710 4.800000e-05 60.2
36 TraesCS7D01G263000 chr4D 80.769 208 33 6 2196 2399 43407873 43408077 5.950000e-34 156.0
37 TraesCS7D01G263000 chr4D 95.652 92 4 0 1 92 48708748 48708657 9.960000e-32 148.0
38 TraesCS7D01G263000 chr2D 96.739 92 3 0 1 92 315803351 315803260 2.140000e-33 154.0
39 TraesCS7D01G263000 chr5A 95.699 93 4 0 1 93 263547376 263547468 2.770000e-32 150.0
40 TraesCS7D01G263000 chr5A 95.699 93 3 1 1 92 554186772 554186864 9.960000e-32 148.0
41 TraesCS7D01G263000 chr1D 97.727 44 1 0 3786 3829 305588313 305588270 4.770000e-10 76.8
42 TraesCS7D01G263000 chr1A 97.727 44 1 0 3786 3829 384333742 384333699 4.770000e-10 76.8
43 TraesCS7D01G263000 chr1A 93.750 48 2 1 3786 3832 343398368 343398415 2.220000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G263000 chr7D 242775723 242780165 4442 False 8205.000000 8205 100.000000 1 4443 1 chr7D.!!$F1 4442
1 TraesCS7D01G263000 chr7A 254900182 254903267 3085 True 2029.000000 3845 91.998000 847 4409 2 chr7A.!!$R1 3562
2 TraesCS7D01G263000 chr7B 218535665 218539473 3808 False 1705.000000 3136 93.688667 293 3644 3 chr7B.!!$F1 3351
3 TraesCS7D01G263000 chr7B 218544116 218545636 1520 False 297.000000 394 88.160500 3709 4443 2 chr7B.!!$F2 734
4 TraesCS7D01G263000 chr6D 27733367 27736049 2682 True 1138.333333 2477 90.143000 856 3612 3 chr6D.!!$R1 2756
5 TraesCS7D01G263000 chr6D 13092447 13093437 990 False 741.000000 741 80.966000 2480 3448 1 chr6D.!!$F1 968
6 TraesCS7D01G263000 chr6B 23645044 23646334 1290 True 856.000000 856 79.516000 2184 3444 1 chr6B.!!$R1 1260
7 TraesCS7D01G263000 chr3B 424131633 424132251 618 True 645.000000 645 85.627000 109 751 1 chr3B.!!$R1 642
8 TraesCS7D01G263000 chr2B 154247410 154247976 566 False 636.000000 636 87.037000 109 692 1 chr2B.!!$F1 583
9 TraesCS7D01G263000 chr6A 14369207 14371373 2166 False 409.333333 507 81.952333 961 3448 3 chr6A.!!$F2 2487
10 TraesCS7D01G263000 chr1B 642192665 642193237 572 True 473.000000 473 82.276000 109 702 1 chr1B.!!$R1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 265 0.387565 GCCAAGTCCCGCAAAAGAAA 59.612 50.000 0.00 0.0 0.00 2.52 F
854 1221 1.491563 CCGAACGCAGTGTTAGTGC 59.508 57.895 0.00 0.0 45.00 4.40 F
1808 2324 3.058983 TCATTGATCGTGTGTTTCAGCAC 60.059 43.478 0.00 0.0 39.65 4.40 F
2250 2798 3.066342 GTGCATTCCCATGATCAGAACAG 59.934 47.826 0.09 0.0 31.07 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 2324 4.950050 ACAACAGTACAGAGAGGTTGAAG 58.050 43.478 9.51 0.0 40.86 3.02 R
2509 3096 4.458989 AGAGTTGTCTTGCTCTCTACTCTG 59.541 45.833 0.00 0.0 40.54 3.35 R
2865 3497 0.170116 CAGCGAGACCAGTCAGAGAC 59.830 60.000 0.00 0.0 0.00 3.36 R
4198 5102 0.033090 GAACTCGAACCACCCTTCGT 59.967 55.000 1.63 0.0 42.97 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.640119 CTTTGTCAAAGTTTGCAAAGTTTAAC 57.360 30.769 33.51 30.70 42.71 2.01
47 48 7.954788 TTGTCAAAGTTTGCAAAGTTTAACT 57.045 28.000 33.51 16.98 38.98 2.24
48 49 7.954788 TGTCAAAGTTTGCAAAGTTTAACTT 57.045 28.000 33.51 21.13 40.80 2.66
67 68 8.958175 TTAACTTTGACCAAAACTAATATGCG 57.042 30.769 0.00 0.00 0.00 4.73
68 69 5.949735 ACTTTGACCAAAACTAATATGCGG 58.050 37.500 0.00 0.00 0.00 5.69
69 70 5.708230 ACTTTGACCAAAACTAATATGCGGA 59.292 36.000 0.00 0.00 0.00 5.54
70 71 5.811399 TTGACCAAAACTAATATGCGGAG 57.189 39.130 0.00 0.00 0.00 4.63
71 72 4.839121 TGACCAAAACTAATATGCGGAGT 58.161 39.130 0.00 0.00 0.00 3.85
72 73 5.979993 TGACCAAAACTAATATGCGGAGTA 58.020 37.500 0.00 0.00 0.00 2.59
73 74 6.408035 TGACCAAAACTAATATGCGGAGTAA 58.592 36.000 0.00 0.00 0.00 2.24
74 75 6.879993 TGACCAAAACTAATATGCGGAGTAAA 59.120 34.615 0.00 0.00 0.00 2.01
75 76 7.554835 TGACCAAAACTAATATGCGGAGTAAAT 59.445 33.333 0.00 0.00 0.00 1.40
76 77 8.967664 ACCAAAACTAATATGCGGAGTAAATA 57.032 30.769 0.00 0.00 0.00 1.40
77 78 9.398538 ACCAAAACTAATATGCGGAGTAAATAA 57.601 29.630 0.00 0.00 0.00 1.40
82 83 9.925268 AACTAATATGCGGAGTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
83 84 9.316730 ACTAATATGCGGAGTAAATAAAAACGA 57.683 29.630 0.00 0.00 0.00 3.85
86 87 5.285798 TGCGGAGTAAATAAAAACGAAGG 57.714 39.130 0.00 0.00 0.00 3.46
87 88 4.154556 TGCGGAGTAAATAAAAACGAAGGG 59.845 41.667 0.00 0.00 0.00 3.95
88 89 4.392754 GCGGAGTAAATAAAAACGAAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
89 90 5.446875 GCGGAGTAAATAAAAACGAAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
90 91 5.640783 CGGAGTAAATAAAAACGAAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
91 92 6.813152 CGGAGTAAATAAAAACGAAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
92 93 7.493645 CGGAGTAAATAAAAACGAAGGGAGTAT 59.506 37.037 0.00 0.00 0.00 2.12
93 94 9.170734 GGAGTAAATAAAAACGAAGGGAGTATT 57.829 33.333 0.00 0.00 0.00 1.89
96 97 9.926751 GTAAATAAAAACGAAGGGAGTATTAGC 57.073 33.333 0.00 0.00 0.00 3.09
97 98 8.803397 AAATAAAAACGAAGGGAGTATTAGCT 57.197 30.769 0.00 0.00 0.00 3.32
98 99 9.895138 AAATAAAAACGAAGGGAGTATTAGCTA 57.105 29.630 0.00 0.00 0.00 3.32
99 100 9.543783 AATAAAAACGAAGGGAGTATTAGCTAG 57.456 33.333 0.00 0.00 0.00 3.42
100 101 6.541934 AAAACGAAGGGAGTATTAGCTAGT 57.458 37.500 0.00 0.00 0.00 2.57
101 102 7.651027 AAAACGAAGGGAGTATTAGCTAGTA 57.349 36.000 0.00 0.00 0.00 1.82
102 103 6.631971 AACGAAGGGAGTATTAGCTAGTAC 57.368 41.667 16.45 16.45 0.00 2.73
103 104 5.939447 ACGAAGGGAGTATTAGCTAGTACT 58.061 41.667 24.34 24.34 32.33 2.73
104 105 7.072263 ACGAAGGGAGTATTAGCTAGTACTA 57.928 40.000 24.19 1.89 30.19 1.82
105 106 7.512992 ACGAAGGGAGTATTAGCTAGTACTAA 58.487 38.462 24.19 0.00 36.60 2.24
106 107 8.162746 ACGAAGGGAGTATTAGCTAGTACTAAT 58.837 37.037 24.19 13.02 43.55 1.73
107 108 9.664332 CGAAGGGAGTATTAGCTAGTACTAATA 57.336 37.037 24.19 4.79 41.80 0.98
130 131 8.788325 ATACTAGGTACCAATTCAACTGTTTC 57.212 34.615 15.94 0.00 0.00 2.78
139 141 1.234821 TCAACTGTTTCGATGGCACC 58.765 50.000 0.00 0.00 0.00 5.01
143 145 0.443869 CTGTTTCGATGGCACCGAAG 59.556 55.000 17.28 1.44 45.14 3.79
163 165 0.944311 CGTCCAGACTGAAACGGGTG 60.944 60.000 17.55 0.00 0.00 4.61
164 166 0.602905 GTCCAGACTGAAACGGGTGG 60.603 60.000 3.32 0.00 0.00 4.61
181 183 4.383118 CGGGTGGAATACAGACTGAAATCT 60.383 45.833 10.08 0.00 0.00 2.40
190 192 4.415596 ACAGACTGAAATCTCTCTCACCT 58.584 43.478 10.08 0.00 0.00 4.00
193 195 2.094286 ACTGAAATCTCTCTCACCTGCG 60.094 50.000 0.00 0.00 0.00 5.18
214 217 0.468400 AGCCCTCCCTCGATACAGAC 60.468 60.000 0.00 0.00 0.00 3.51
217 220 1.411787 CCCTCCCTCGATACAGACCTT 60.412 57.143 0.00 0.00 0.00 3.50
248 251 2.810439 TTTCGGTTGAATTGGCCAAG 57.190 45.000 24.94 8.35 33.20 3.61
260 263 1.901464 GGCCAAGTCCCGCAAAAGA 60.901 57.895 0.00 0.00 0.00 2.52
261 264 1.460273 GGCCAAGTCCCGCAAAAGAA 61.460 55.000 0.00 0.00 0.00 2.52
262 265 0.387565 GCCAAGTCCCGCAAAAGAAA 59.612 50.000 0.00 0.00 0.00 2.52
263 266 1.868109 GCCAAGTCCCGCAAAAGAAAC 60.868 52.381 0.00 0.00 0.00 2.78
280 283 5.169836 AGAAACAAAACGATTGGAGACAC 57.830 39.130 9.76 0.00 42.67 3.67
398 401 3.834056 CCCGGCCCTCCTCCTCTA 61.834 72.222 0.00 0.00 0.00 2.43
574 594 2.066393 CGGAAGGCCATCTCCTCCA 61.066 63.158 5.01 0.00 34.82 3.86
789 1141 7.175641 ACTCAACTAGATTTTCCAAGTCCATTG 59.824 37.037 0.00 0.00 38.74 2.82
799 1151 3.073798 TCCAAGTCCATTGCAGTTTCCTA 59.926 43.478 0.00 0.00 37.60 2.94
801 1153 4.321230 CCAAGTCCATTGCAGTTTCCTAAC 60.321 45.833 0.00 0.00 37.60 2.34
854 1221 1.491563 CCGAACGCAGTGTTAGTGC 59.508 57.895 0.00 0.00 45.00 4.40
903 1270 8.155821 TGTAGTACTAGTCTGATTGCTGATAC 57.844 38.462 1.87 0.00 0.00 2.24
905 1272 7.270757 AGTACTAGTCTGATTGCTGATACTG 57.729 40.000 0.00 0.00 0.00 2.74
907 1274 5.204292 ACTAGTCTGATTGCTGATACTGGA 58.796 41.667 0.00 0.00 0.00 3.86
1315 1693 6.211584 TGGTAGCTAATGGATATCCTCACTTC 59.788 42.308 22.35 10.07 36.82 3.01
1316 1694 6.211584 GGTAGCTAATGGATATCCTCACTTCA 59.788 42.308 22.35 0.53 36.82 3.02
1320 1698 8.223330 AGCTAATGGATATCCTCACTTCAAATT 58.777 33.333 22.35 12.19 36.82 1.82
1541 1947 3.314635 GCTAGCATTTGTTGAGGATCCAG 59.685 47.826 15.82 0.00 0.00 3.86
1703 2219 4.031089 GCGAATGCATCTGTATCAGTATCG 59.969 45.833 0.00 1.86 42.15 2.92
1808 2324 3.058983 TCATTGATCGTGTGTTTCAGCAC 60.059 43.478 0.00 0.00 39.65 4.40
2250 2798 3.066342 GTGCATTCCCATGATCAGAACAG 59.934 47.826 0.09 0.00 31.07 3.16
2281 2833 7.244886 TCATGACTTCCTTCTTGATTCAGTA 57.755 36.000 0.00 0.00 0.00 2.74
2298 2850 8.239314 TGATTCAGTATTTCAAAAGCTAAGCTG 58.761 33.333 0.00 0.00 39.62 4.24
2855 3467 7.776969 TCTGGCTTAATGCTCTCATTATTCTTT 59.223 33.333 0.00 0.00 42.75 2.52
2857 3469 8.192774 TGGCTTAATGCTCTCATTATTCTTTTG 58.807 33.333 0.00 0.00 42.75 2.44
2858 3470 7.650903 GGCTTAATGCTCTCATTATTCTTTTGG 59.349 37.037 0.00 0.00 42.75 3.28
2861 3473 6.705863 ATGCTCTCATTATTCTTTTGGACC 57.294 37.500 0.00 0.00 0.00 4.46
2865 3497 6.038050 GCTCTCATTATTCTTTTGGACCTCAG 59.962 42.308 0.00 0.00 0.00 3.35
2869 3501 7.106239 TCATTATTCTTTTGGACCTCAGTCTC 58.894 38.462 0.00 0.00 43.05 3.36
2929 3561 6.414732 TGAAAGCTGTAACCAGTGCTATATT 58.585 36.000 0.00 0.00 41.02 1.28
2932 3564 8.801882 AAAGCTGTAACCAGTGCTATATTTTA 57.198 30.769 0.00 0.00 41.02 1.52
3030 3669 7.541916 AAATATACTGGCTACCCTCTTACTC 57.458 40.000 0.00 0.00 0.00 2.59
3466 4158 1.295101 CCATGGCGTGTCACCAGTA 59.705 57.895 0.00 0.00 41.46 2.74
3471 4163 2.649034 CGTGTCACCAGTAGCCGT 59.351 61.111 0.00 0.00 0.00 5.68
3505 4197 4.523083 TGCAGTCTTGTAAACAGTCCTTT 58.477 39.130 0.00 0.00 0.00 3.11
3525 4217 8.553696 GTCCTTTTACGAAGATAAACTTGAACA 58.446 33.333 0.00 0.00 39.13 3.18
3528 4220 8.722342 TTTTACGAAGATAAACTTGAACATGC 57.278 30.769 0.00 0.00 39.13 4.06
3529 4221 7.667043 TTACGAAGATAAACTTGAACATGCT 57.333 32.000 0.00 0.00 39.13 3.79
3530 4222 8.766000 TTACGAAGATAAACTTGAACATGCTA 57.234 30.769 0.00 0.00 39.13 3.49
3532 4224 7.688372 ACGAAGATAAACTTGAACATGCTATG 58.312 34.615 0.00 0.00 39.13 2.23
3533 4225 7.334421 ACGAAGATAAACTTGAACATGCTATGT 59.666 33.333 0.00 0.00 41.40 2.29
3534 4226 8.177663 CGAAGATAAACTTGAACATGCTATGTT 58.822 33.333 12.41 12.41 46.26 2.71
3542 4234 2.315925 ACATGCTATGTTCCAGACGG 57.684 50.000 0.00 0.00 41.63 4.79
3586 4283 3.398406 TCGTTATGCAGTTTGCTGAAGA 58.602 40.909 2.48 0.00 45.31 2.87
3601 4298 4.834496 TGCTGAAGAAAAGATGTCCCATTT 59.166 37.500 0.00 0.00 0.00 2.32
3651 4353 4.097863 GCTGTTGCCCGCCGTTAC 62.098 66.667 0.00 0.00 0.00 2.50
3659 4361 1.310216 GCCCGCCGTTACTTTTGGAT 61.310 55.000 0.00 0.00 0.00 3.41
3660 4362 1.170442 CCCGCCGTTACTTTTGGATT 58.830 50.000 0.00 0.00 0.00 3.01
3661 4363 1.135517 CCCGCCGTTACTTTTGGATTG 60.136 52.381 0.00 0.00 0.00 2.67
3662 4364 1.135517 CCGCCGTTACTTTTGGATTGG 60.136 52.381 0.00 0.00 0.00 3.16
3663 4365 1.807742 CGCCGTTACTTTTGGATTGGA 59.192 47.619 0.00 0.00 0.00 3.53
3664 4366 2.226912 CGCCGTTACTTTTGGATTGGAA 59.773 45.455 0.00 0.00 0.00 3.53
3665 4367 3.304794 CGCCGTTACTTTTGGATTGGAAA 60.305 43.478 0.00 0.00 0.00 3.13
3666 4368 3.985279 GCCGTTACTTTTGGATTGGAAAC 59.015 43.478 0.00 0.00 0.00 2.78
3667 4369 4.500035 GCCGTTACTTTTGGATTGGAAACA 60.500 41.667 0.00 0.00 39.83 2.83
3668 4370 4.979815 CCGTTACTTTTGGATTGGAAACAC 59.020 41.667 0.00 0.00 42.67 3.32
3669 4371 4.979815 CGTTACTTTTGGATTGGAAACACC 59.020 41.667 0.00 0.00 42.67 4.16
3699 4401 6.638096 TTTTTGCTGATGAACATCTTCTGA 57.362 33.333 14.50 0.00 38.60 3.27
3757 4459 6.202954 AGCATGTAGACTTTTCTGTGTTGTAC 59.797 38.462 0.00 0.00 32.75 2.90
3758 4460 6.018262 GCATGTAGACTTTTCTGTGTTGTACA 60.018 38.462 0.00 0.00 37.78 2.90
3775 4477 6.761714 TGTTGTACACACACACACATACAATA 59.238 34.615 0.00 0.00 35.60 1.90
3776 4478 6.772770 TGTACACACACACACATACAATAC 57.227 37.500 0.00 0.00 0.00 1.89
3783 4485 4.081087 ACACACACATACAATACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
3785 4487 3.132289 CACACATACAATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
3793 4495 4.529377 ACAATACTCCCTCCGTTTGAACTA 59.471 41.667 0.00 0.00 0.00 2.24
3800 4502 3.824443 CCCTCCGTTTGAACTAAAACCAT 59.176 43.478 0.00 0.00 36.83 3.55
3802 4504 4.517453 CCTCCGTTTGAACTAAAACCATGA 59.483 41.667 0.00 0.00 36.83 3.07
3814 4516 8.986477 AACTAAAACCATGACAAGAATTATGC 57.014 30.769 0.00 0.00 0.00 3.14
3817 4519 7.656707 AAAACCATGACAAGAATTATGCAAC 57.343 32.000 0.00 0.00 0.00 4.17
3818 4520 5.981088 ACCATGACAAGAATTATGCAACA 57.019 34.783 0.00 0.00 0.00 3.33
3832 4534 3.126001 TGCAACAGAGGGAGTACTTTG 57.874 47.619 0.00 0.00 0.00 2.77
3833 4535 2.438021 TGCAACAGAGGGAGTACTTTGT 59.562 45.455 0.00 0.00 37.40 2.83
3841 4543 5.659079 CAGAGGGAGTACTTTGTAAGGAGAT 59.341 44.000 0.00 0.00 0.00 2.75
3846 4548 7.899709 AGGGAGTACTTTGTAAGGAGATAAAGA 59.100 37.037 0.00 0.00 34.94 2.52
3902 4611 5.246307 AGAATCTAAAGCCTTGCGTTTACT 58.754 37.500 0.00 0.00 32.01 2.24
3912 4621 4.403453 CCTTGCGTTTACTTTCAGCATAC 58.597 43.478 0.00 0.00 37.68 2.39
3943 4653 4.875544 TGTTTCTGCTCAAACAGTGTAC 57.124 40.909 9.04 0.00 40.57 2.90
3946 4656 4.400529 TTCTGCTCAAACAGTGTACAGA 57.599 40.909 0.00 2.67 38.00 3.41
3987 4697 1.821332 CCCTCGGCAGCTTCAATCC 60.821 63.158 0.00 0.00 0.00 3.01
4003 4713 3.820467 TCAATCCTAGCCACACAACTTTG 59.180 43.478 0.00 0.00 0.00 2.77
4035 4745 1.375523 AGGATGGCCAAACGTCGAC 60.376 57.895 10.96 5.18 36.29 4.20
4043 4753 1.694639 CCAAACGTCGACTCTGTACC 58.305 55.000 14.70 0.00 0.00 3.34
4044 4754 1.668047 CCAAACGTCGACTCTGTACCC 60.668 57.143 14.70 0.00 0.00 3.69
4045 4755 0.600057 AAACGTCGACTCTGTACCCC 59.400 55.000 14.70 0.00 0.00 4.95
4046 4756 0.538057 AACGTCGACTCTGTACCCCA 60.538 55.000 14.70 0.00 0.00 4.96
4047 4757 0.959372 ACGTCGACTCTGTACCCCAG 60.959 60.000 14.70 0.00 42.97 4.45
4048 4758 1.654954 CGTCGACTCTGTACCCCAGG 61.655 65.000 14.70 0.00 41.83 4.45
4066 4776 2.512896 CCCAGGGGCAGAGCATAC 59.487 66.667 0.00 0.00 0.00 2.39
4084 4794 0.036306 ACAACGGTTCCAGGACCATC 59.964 55.000 8.35 0.00 39.78 3.51
4085 4795 1.019278 CAACGGTTCCAGGACCATCG 61.019 60.000 8.35 1.18 39.78 3.84
4086 4796 1.189524 AACGGTTCCAGGACCATCGA 61.190 55.000 0.53 0.00 39.78 3.59
4087 4797 1.189524 ACGGTTCCAGGACCATCGAA 61.190 55.000 0.53 0.00 39.78 3.71
4088 4798 0.739813 CGGTTCCAGGACCATCGAAC 60.740 60.000 8.94 8.94 39.78 3.95
4090 4800 1.439679 GTTCCAGGACCATCGAACAC 58.560 55.000 11.45 0.00 35.71 3.32
4092 4802 1.348064 TCCAGGACCATCGAACACTT 58.652 50.000 0.00 0.00 0.00 3.16
4093 4803 1.001974 TCCAGGACCATCGAACACTTG 59.998 52.381 0.00 0.00 0.00 3.16
4094 4804 1.001974 CCAGGACCATCGAACACTTGA 59.998 52.381 0.00 0.00 0.00 3.02
4095 4805 2.341257 CAGGACCATCGAACACTTGAG 58.659 52.381 0.00 0.00 0.00 3.02
4096 4806 1.079503 GGACCATCGAACACTTGAGC 58.920 55.000 0.00 0.00 0.00 4.26
4097 4807 1.338200 GGACCATCGAACACTTGAGCT 60.338 52.381 0.00 0.00 0.00 4.09
4098 4808 1.728971 GACCATCGAACACTTGAGCTG 59.271 52.381 0.00 0.00 0.00 4.24
4099 4809 1.081892 CCATCGAACACTTGAGCTGG 58.918 55.000 0.00 0.00 0.00 4.85
4100 4810 1.081892 CATCGAACACTTGAGCTGGG 58.918 55.000 0.00 0.00 0.00 4.45
4101 4811 0.674895 ATCGAACACTTGAGCTGGGC 60.675 55.000 0.00 0.00 0.00 5.36
4102 4812 2.671177 CGAACACTTGAGCTGGGCG 61.671 63.158 0.00 0.00 0.00 6.13
4196 5100 0.803380 GACTACGGGCGCACGTATTT 60.803 55.000 41.26 31.26 46.77 1.40
4197 5101 0.803380 ACTACGGGCGCACGTATTTC 60.803 55.000 41.26 6.41 46.77 2.17
4198 5102 0.802994 CTACGGGCGCACGTATTTCA 60.803 55.000 41.26 24.14 46.77 2.69
4274 5798 2.364961 CCTCTTCCTCCCGGTCCT 59.635 66.667 0.00 0.00 0.00 3.85
4279 5803 4.715130 TCCTCCCGGTCCTGGTGG 62.715 72.222 12.99 12.99 37.78 4.61
4291 5815 3.868200 CTGGTGGTGGTGGGGCTTC 62.868 68.421 0.00 0.00 0.00 3.86
4361 5885 3.636300 TGGCTTGCAGAAATTTGTGTAGT 59.364 39.130 15.91 0.00 0.00 2.73
4394 5918 3.361786 TGGCTGCTGTATCAGTACTACA 58.638 45.455 0.00 0.00 36.49 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.371770 AGTTAAACTTTGCAAACTTTGACAAA 57.628 26.923 26.03 16.44 36.24 2.83
23 24 7.954788 AGTTAAACTTTGCAAACTTTGACAA 57.045 28.000 26.03 13.54 0.00 3.18
24 25 7.954788 AAGTTAAACTTTGCAAACTTTGACA 57.045 28.000 26.03 9.84 38.65 3.58
41 42 9.400638 CGCATATTAGTTTTGGTCAAAGTTAAA 57.599 29.630 0.00 0.00 30.16 1.52
42 43 8.024285 CCGCATATTAGTTTTGGTCAAAGTTAA 58.976 33.333 0.00 1.67 30.16 2.01
43 44 7.390996 TCCGCATATTAGTTTTGGTCAAAGTTA 59.609 33.333 0.00 0.00 30.16 2.24
44 45 6.207810 TCCGCATATTAGTTTTGGTCAAAGTT 59.792 34.615 0.00 0.00 30.16 2.66
45 46 5.708230 TCCGCATATTAGTTTTGGTCAAAGT 59.292 36.000 0.00 0.00 32.41 2.66
46 47 6.128007 ACTCCGCATATTAGTTTTGGTCAAAG 60.128 38.462 0.00 0.00 0.00 2.77
47 48 5.708230 ACTCCGCATATTAGTTTTGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
48 49 5.250200 ACTCCGCATATTAGTTTTGGTCAA 58.750 37.500 0.00 0.00 0.00 3.18
49 50 4.839121 ACTCCGCATATTAGTTTTGGTCA 58.161 39.130 0.00 0.00 0.00 4.02
50 51 6.913873 TTACTCCGCATATTAGTTTTGGTC 57.086 37.500 0.00 0.00 0.00 4.02
51 52 7.875327 ATTTACTCCGCATATTAGTTTTGGT 57.125 32.000 0.00 0.00 0.00 3.67
56 57 9.925268 CGTTTTTATTTACTCCGCATATTAGTT 57.075 29.630 0.00 0.00 0.00 2.24
57 58 9.316730 TCGTTTTTATTTACTCCGCATATTAGT 57.683 29.630 0.00 0.00 0.00 2.24
60 61 8.126700 CCTTCGTTTTTATTTACTCCGCATATT 58.873 33.333 0.00 0.00 0.00 1.28
61 62 7.255001 CCCTTCGTTTTTATTTACTCCGCATAT 60.255 37.037 0.00 0.00 0.00 1.78
62 63 6.037391 CCCTTCGTTTTTATTTACTCCGCATA 59.963 38.462 0.00 0.00 0.00 3.14
63 64 5.163693 CCCTTCGTTTTTATTTACTCCGCAT 60.164 40.000 0.00 0.00 0.00 4.73
64 65 4.154556 CCCTTCGTTTTTATTTACTCCGCA 59.845 41.667 0.00 0.00 0.00 5.69
65 66 4.392754 TCCCTTCGTTTTTATTTACTCCGC 59.607 41.667 0.00 0.00 0.00 5.54
66 67 5.640783 ACTCCCTTCGTTTTTATTTACTCCG 59.359 40.000 0.00 0.00 0.00 4.63
67 68 8.728337 ATACTCCCTTCGTTTTTATTTACTCC 57.272 34.615 0.00 0.00 0.00 3.85
70 71 9.926751 GCTAATACTCCCTTCGTTTTTATTTAC 57.073 33.333 0.00 0.00 0.00 2.01
71 72 9.895138 AGCTAATACTCCCTTCGTTTTTATTTA 57.105 29.630 0.00 0.00 0.00 1.40
72 73 8.803397 AGCTAATACTCCCTTCGTTTTTATTT 57.197 30.769 0.00 0.00 0.00 1.40
73 74 9.543783 CTAGCTAATACTCCCTTCGTTTTTATT 57.456 33.333 0.00 0.00 0.00 1.40
74 75 8.702819 ACTAGCTAATACTCCCTTCGTTTTTAT 58.297 33.333 0.00 0.00 0.00 1.40
75 76 8.071177 ACTAGCTAATACTCCCTTCGTTTTTA 57.929 34.615 0.00 0.00 0.00 1.52
76 77 6.944096 ACTAGCTAATACTCCCTTCGTTTTT 58.056 36.000 0.00 0.00 0.00 1.94
77 78 6.541934 ACTAGCTAATACTCCCTTCGTTTT 57.458 37.500 0.00 0.00 0.00 2.43
78 79 6.832900 AGTACTAGCTAATACTCCCTTCGTTT 59.167 38.462 9.05 0.00 0.00 3.60
79 80 6.363882 AGTACTAGCTAATACTCCCTTCGTT 58.636 40.000 9.05 0.00 0.00 3.85
80 81 5.939447 AGTACTAGCTAATACTCCCTTCGT 58.061 41.667 9.05 0.00 0.00 3.85
81 82 7.976135 TTAGTACTAGCTAATACTCCCTTCG 57.024 40.000 17.64 0.00 33.65 3.79
101 102 9.043548 ACAGTTGAATTGGTACCTAGTATTAGT 57.956 33.333 14.36 0.00 0.00 2.24
102 103 9.886132 AACAGTTGAATTGGTACCTAGTATTAG 57.114 33.333 14.36 0.00 0.00 1.73
104 105 9.227777 GAAACAGTTGAATTGGTACCTAGTATT 57.772 33.333 14.36 7.55 0.00 1.89
105 106 7.548075 CGAAACAGTTGAATTGGTACCTAGTAT 59.452 37.037 14.36 0.00 0.00 2.12
106 107 6.869913 CGAAACAGTTGAATTGGTACCTAGTA 59.130 38.462 14.36 0.00 0.00 1.82
107 108 5.699458 CGAAACAGTTGAATTGGTACCTAGT 59.301 40.000 14.36 4.37 0.00 2.57
115 116 3.244976 GCCATCGAAACAGTTGAATTGG 58.755 45.455 0.00 0.00 0.00 3.16
123 124 0.250124 TTCGGTGCCATCGAAACAGT 60.250 50.000 10.91 0.00 42.57 3.55
130 131 3.554692 GACGCTTCGGTGCCATCG 61.555 66.667 0.00 0.00 0.00 3.84
139 141 0.784778 GTTTCAGTCTGGACGCTTCG 59.215 55.000 0.00 0.00 36.20 3.79
143 145 2.027625 CCCGTTTCAGTCTGGACGC 61.028 63.158 18.38 0.00 36.20 5.19
163 165 6.978080 GTGAGAGAGATTTCAGTCTGTATTCC 59.022 42.308 0.00 0.00 0.00 3.01
164 166 6.978080 GGTGAGAGAGATTTCAGTCTGTATTC 59.022 42.308 0.00 0.00 0.00 1.75
181 183 4.074526 GGCTGCGCAGGTGAGAGA 62.075 66.667 36.47 0.00 0.00 3.10
193 195 2.093537 CTGTATCGAGGGAGGGCTGC 62.094 65.000 0.00 0.00 0.00 5.25
214 217 0.811616 CGAAATCGGAGGCAGGAAGG 60.812 60.000 0.00 0.00 35.37 3.46
241 244 2.123683 TTTTGCGGGACTTGGCCA 60.124 55.556 0.00 0.00 0.00 5.36
248 251 2.280445 CGTTTTGTTTCTTTTGCGGGAC 59.720 45.455 0.00 0.00 0.00 4.46
260 263 4.974368 TGTGTCTCCAATCGTTTTGTTT 57.026 36.364 1.37 0.00 0.00 2.83
261 264 4.733523 GCTTGTGTCTCCAATCGTTTTGTT 60.734 41.667 1.37 0.00 0.00 2.83
262 265 3.243068 GCTTGTGTCTCCAATCGTTTTGT 60.243 43.478 1.37 0.00 0.00 2.83
263 266 3.300009 GCTTGTGTCTCCAATCGTTTTG 58.700 45.455 0.00 0.00 0.00 2.44
280 283 4.821589 GGTCTCTCGCGGGGCTTG 62.822 72.222 5.94 0.00 0.00 4.01
430 445 1.557269 GCTGCAGGAGGAGGGAAAGA 61.557 60.000 17.12 0.00 33.18 2.52
841 1208 0.955428 ATGGTGGCACTAACACTGCG 60.955 55.000 18.45 0.00 38.83 5.18
903 1270 6.694411 CAGATTTCCGATTAAATTGCTTCCAG 59.306 38.462 0.00 0.00 0.00 3.86
905 1272 6.564328 ACAGATTTCCGATTAAATTGCTTCC 58.436 36.000 0.00 0.00 0.00 3.46
907 1274 7.872483 ACAAACAGATTTCCGATTAAATTGCTT 59.128 29.630 0.00 0.00 0.00 3.91
959 1326 3.711190 GGATTATTTCAAAGGGGGCACAT 59.289 43.478 0.00 0.00 0.00 3.21
1541 1947 8.379457 ACCGGCTGTATTTCTTTCTATAATTC 57.621 34.615 0.00 0.00 0.00 2.17
1808 2324 4.950050 ACAACAGTACAGAGAGGTTGAAG 58.050 43.478 9.51 0.00 40.86 3.02
2250 2798 5.707298 TCAAGAAGGAAGTCATGAATGAACC 59.293 40.000 0.00 1.48 38.75 3.62
2281 2833 5.767168 ACTCACTCAGCTTAGCTTTTGAAAT 59.233 36.000 3.00 0.00 36.40 2.17
2298 2850 8.174422 GCTTCAATCTTTTCTGAATACTCACTC 58.826 37.037 0.00 0.00 31.40 3.51
2478 3065 6.334989 CAGATTTTCATTTTCTGGCTGCATA 58.665 36.000 0.50 0.00 34.55 3.14
2509 3096 4.458989 AGAGTTGTCTTGCTCTCTACTCTG 59.541 45.833 0.00 0.00 40.54 3.35
2664 3263 6.014840 CCATCTGAGCCCTATTTAATTGCATT 60.015 38.462 0.00 0.00 0.00 3.56
2855 3467 2.685106 AGTCAGAGACTGAGGTCCAA 57.315 50.000 1.53 0.00 41.76 3.53
2865 3497 0.170116 CAGCGAGACCAGTCAGAGAC 59.830 60.000 0.00 0.00 0.00 3.36
2869 3501 2.376808 AAATCAGCGAGACCAGTCAG 57.623 50.000 0.00 0.00 0.00 3.51
3030 3669 3.265791 GTGCAGTTAGGAGATCCAACAG 58.734 50.000 0.92 2.73 38.89 3.16
3466 4158 3.700038 ACTGCAGTACTATCTTAACGGCT 59.300 43.478 20.16 0.00 35.68 5.52
3471 4163 9.635520 GTTTACAAGACTGCAGTACTATCTTAA 57.364 33.333 21.73 7.72 0.00 1.85
3505 4197 7.667043 AGCATGTTCAAGTTTATCTTCGTAA 57.333 32.000 0.00 0.00 33.63 3.18
3525 4217 2.101582 GTCTCCGTCTGGAACATAGCAT 59.898 50.000 0.00 0.00 45.87 3.79
3528 4220 2.014857 TCGTCTCCGTCTGGAACATAG 58.985 52.381 0.00 0.00 45.87 2.23
3529 4221 2.014857 CTCGTCTCCGTCTGGAACATA 58.985 52.381 0.00 0.00 45.87 2.29
3530 4222 0.811915 CTCGTCTCCGTCTGGAACAT 59.188 55.000 0.00 0.00 45.87 2.71
3532 4224 1.153997 GCTCGTCTCCGTCTGGAAC 60.154 63.158 0.00 0.00 45.87 3.62
3533 4225 0.965866 ATGCTCGTCTCCGTCTGGAA 60.966 55.000 0.00 0.00 45.87 3.53
3534 4226 0.965866 AATGCTCGTCTCCGTCTGGA 60.966 55.000 0.00 0.00 43.88 3.86
3535 4227 0.803768 CAATGCTCGTCTCCGTCTGG 60.804 60.000 0.00 0.00 35.01 3.86
3536 4228 1.416813 GCAATGCTCGTCTCCGTCTG 61.417 60.000 0.00 0.00 35.01 3.51
3537 4229 1.153745 GCAATGCTCGTCTCCGTCT 60.154 57.895 0.00 0.00 35.01 4.18
3538 4230 1.153745 AGCAATGCTCGTCTCCGTC 60.154 57.895 0.00 0.00 30.62 4.79
3539 4231 1.446792 CAGCAATGCTCGTCTCCGT 60.447 57.895 4.03 0.00 36.40 4.69
3540 4232 2.806856 GCAGCAATGCTCGTCTCCG 61.807 63.158 4.03 0.00 36.40 4.63
3541 4233 1.449246 AGCAGCAATGCTCGTCTCC 60.449 57.895 4.03 0.00 42.12 3.71
3542 4234 4.198625 AGCAGCAATGCTCGTCTC 57.801 55.556 4.03 0.00 42.12 3.36
3601 4298 0.810648 GTGAGCCGATGCATTTTCCA 59.189 50.000 0.00 0.00 41.13 3.53
3644 4346 3.926821 TTCCAATCCAAAAGTAACGGC 57.073 42.857 0.00 0.00 0.00 5.68
3646 4348 4.979815 GGTGTTTCCAATCCAAAAGTAACG 59.020 41.667 0.00 0.00 35.97 3.18
3676 4378 6.638096 TCAGAAGATGTTCATCAGCAAAAA 57.362 33.333 14.05 0.00 34.82 1.94
3677 4379 6.617879 CATCAGAAGATGTTCATCAGCAAAA 58.382 36.000 14.05 0.00 45.28 2.44
3678 4380 6.190954 CATCAGAAGATGTTCATCAGCAAA 57.809 37.500 14.05 0.00 45.28 3.68
3679 4381 5.813080 CATCAGAAGATGTTCATCAGCAA 57.187 39.130 14.05 0.00 45.28 3.91
3725 4427 8.226448 CACAGAAAAGTCTACATGCTTTTAGAG 58.774 37.037 8.26 5.31 42.71 2.43
3731 4433 5.590259 ACAACACAGAAAAGTCTACATGCTT 59.410 36.000 0.00 0.00 30.85 3.91
3757 4459 4.391830 GGGAGTATTGTATGTGTGTGTGTG 59.608 45.833 0.00 0.00 0.00 3.82
3758 4460 4.286032 AGGGAGTATTGTATGTGTGTGTGT 59.714 41.667 0.00 0.00 0.00 3.72
3759 4461 4.832248 AGGGAGTATTGTATGTGTGTGTG 58.168 43.478 0.00 0.00 0.00 3.82
3760 4462 4.081087 GGAGGGAGTATTGTATGTGTGTGT 60.081 45.833 0.00 0.00 0.00 3.72
3761 4463 4.442706 GGAGGGAGTATTGTATGTGTGTG 58.557 47.826 0.00 0.00 0.00 3.82
3762 4464 3.132289 CGGAGGGAGTATTGTATGTGTGT 59.868 47.826 0.00 0.00 0.00 3.72
3769 4471 4.529377 AGTTCAAACGGAGGGAGTATTGTA 59.471 41.667 0.00 0.00 0.00 2.41
3771 4473 3.939066 AGTTCAAACGGAGGGAGTATTG 58.061 45.455 0.00 0.00 0.00 1.90
3775 4477 4.132336 GTTTTAGTTCAAACGGAGGGAGT 58.868 43.478 0.00 0.00 0.00 3.85
3776 4478 3.501062 GGTTTTAGTTCAAACGGAGGGAG 59.499 47.826 0.00 0.00 37.50 4.30
3783 4485 6.491394 TCTTGTCATGGTTTTAGTTCAAACG 58.509 36.000 0.00 0.00 37.50 3.60
3793 4495 7.215789 TGTTGCATAATTCTTGTCATGGTTTT 58.784 30.769 0.00 0.00 0.00 2.43
3800 4502 4.701651 CCCTCTGTTGCATAATTCTTGTCA 59.298 41.667 0.00 0.00 0.00 3.58
3802 4504 4.922206 TCCCTCTGTTGCATAATTCTTGT 58.078 39.130 0.00 0.00 0.00 3.16
3814 4516 5.011738 TCCTTACAAAGTACTCCCTCTGTTG 59.988 44.000 0.00 0.00 0.00 3.33
3817 4519 5.017490 TCTCCTTACAAAGTACTCCCTCTG 58.983 45.833 0.00 0.00 0.00 3.35
3818 4520 5.272405 TCTCCTTACAAAGTACTCCCTCT 57.728 43.478 0.00 0.00 0.00 3.69
3832 4534 9.129209 GCACAAATTGTTTCTTTATCTCCTTAC 57.871 33.333 0.00 0.00 0.00 2.34
3833 4535 8.020819 CGCACAAATTGTTTCTTTATCTCCTTA 58.979 33.333 0.00 0.00 0.00 2.69
3841 4543 7.700322 TTTATGCGCACAAATTGTTTCTTTA 57.300 28.000 14.90 0.00 0.00 1.85
3846 4548 6.142002 GCAAATTTTATGCGCACAAATTGTTT 59.858 30.769 29.29 20.69 31.85 2.83
3883 4588 4.817464 TGAAAGTAAACGCAAGGCTTTAGA 59.183 37.500 0.00 0.00 46.39 2.10
3886 4595 3.795488 GCTGAAAGTAAACGCAAGGCTTT 60.795 43.478 0.00 0.00 37.99 3.51
3912 4621 2.029739 TGAGCAGAAACATGTGCATTGG 60.030 45.455 0.00 0.00 42.47 3.16
3987 4697 2.749621 GGATCCAAAGTTGTGTGGCTAG 59.250 50.000 6.95 0.00 34.68 3.42
4003 4713 1.097547 CATCCTGTGCCGTTGGATCC 61.098 60.000 4.20 4.20 38.41 3.36
4064 4774 1.276989 GATGGTCCTGGAACCGTTGTA 59.723 52.381 9.72 0.00 42.62 2.41
4065 4775 0.036306 GATGGTCCTGGAACCGTTGT 59.964 55.000 9.72 0.00 42.62 3.32
4066 4776 1.019278 CGATGGTCCTGGAACCGTTG 61.019 60.000 9.72 9.36 42.62 4.10
4084 4794 2.671177 CGCCCAGCTCAAGTGTTCG 61.671 63.158 0.00 0.00 0.00 3.95
4085 4795 2.970974 GCGCCCAGCTCAAGTGTTC 61.971 63.158 0.00 0.00 44.04 3.18
4086 4796 2.980233 GCGCCCAGCTCAAGTGTT 60.980 61.111 0.00 0.00 44.04 3.32
4145 5047 3.823369 CTAGGACTAGGAGCCCGAA 57.177 57.895 0.00 0.00 0.00 4.30
4178 5082 0.803380 GAAATACGTGCGCCCGTAGT 60.803 55.000 27.66 23.61 45.47 2.73
4181 5085 2.048033 TGAAATACGTGCGCCCGT 60.048 55.556 23.49 23.49 44.50 5.28
4196 5100 1.111116 ACTCGAACCACCCTTCGTGA 61.111 55.000 9.59 0.00 46.20 4.35
4197 5101 0.249741 AACTCGAACCACCCTTCGTG 60.250 55.000 1.63 2.22 42.97 4.35
4198 5102 0.033090 GAACTCGAACCACCCTTCGT 59.967 55.000 1.63 0.00 42.97 3.85
4274 5798 3.897122 GAAGCCCCACCACCACCA 61.897 66.667 0.00 0.00 0.00 4.17
4291 5815 2.357517 GTCACCACTCACCAGGCG 60.358 66.667 0.00 0.00 0.00 5.52
4394 5918 0.666374 GCGTGCAAGGTGGTAAACTT 59.334 50.000 0.79 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.