Multiple sequence alignment - TraesCS7D01G262800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G262800 chr7D 100.000 4161 0 0 1 4161 242009932 242005772 0.000000e+00 7685.0
1 TraesCS7D01G262800 chr7A 94.356 2569 105 14 776 3321 256008336 256010887 0.000000e+00 3904.0
2 TraesCS7D01G262800 chr7A 86.527 334 33 3 302 623 256006365 256006698 1.420000e-94 357.0
3 TraesCS7D01G262800 chr7A 88.210 229 24 3 1294 1520 437683300 437683073 1.910000e-68 270.0
4 TraesCS7D01G262800 chr7A 88.210 229 24 3 1294 1520 525545844 525545617 1.910000e-68 270.0
5 TraesCS7D01G262800 chr7A 94.595 148 8 0 646 793 256008170 256008317 3.240000e-56 230.0
6 TraesCS7D01G262800 chr7B 93.175 2066 64 18 1809 3852 217801378 217799368 0.000000e+00 2963.0
7 TraesCS7D01G262800 chr7B 94.463 1228 53 8 676 1902 217802605 217801392 0.000000e+00 1877.0
8 TraesCS7D01G262800 chr7B 93.333 135 7 1 3854 3986 217799325 217799191 9.120000e-47 198.0
9 TraesCS7D01G262800 chr7B 87.805 123 11 4 4042 4161 538562186 538562065 1.560000e-29 141.0
10 TraesCS7D01G262800 chr7B 87.805 123 11 4 4042 4161 538563404 538563283 1.560000e-29 141.0
11 TraesCS7D01G262800 chr6D 87.255 306 35 4 1 304 263100315 263100618 3.080000e-91 346.0
12 TraesCS7D01G262800 chr6D 90.476 210 20 0 1308 1517 234473683 234473892 1.140000e-70 278.0
13 TraesCS7D01G262800 chr5B 82.400 375 41 18 1158 1517 473742093 473741729 1.880000e-78 303.0
14 TraesCS7D01G262800 chr5D 92.381 210 16 0 1308 1517 393877748 393877539 2.430000e-77 300.0
15 TraesCS7D01G262800 chr5A 92.381 210 16 0 1308 1517 495884696 495884487 2.430000e-77 300.0
16 TraesCS7D01G262800 chr5A 85.484 124 13 5 4042 4161 441523112 441522990 1.570000e-24 124.0
17 TraesCS7D01G262800 chr5A 89.552 67 7 0 305 371 345375230 345375164 7.410000e-13 86.1
18 TraesCS7D01G262800 chr3D 91.429 210 18 0 1308 1517 568318519 568318310 5.260000e-74 289.0
19 TraesCS7D01G262800 chr3D 85.484 124 13 5 4042 4161 40485982 40485860 1.570000e-24 124.0
20 TraesCS7D01G262800 chr1D 80.719 306 54 5 1 303 234498179 234497876 2.500000e-57 233.0
21 TraesCS7D01G262800 chr1D 85.950 121 13 4 4044 4161 105339815 105339934 4.370000e-25 126.0
22 TraesCS7D01G262800 chr4A 82.576 264 43 3 43 304 184134133 184134395 3.240000e-56 230.0
23 TraesCS7D01G262800 chr4A 77.597 308 63 6 1 304 468922243 468922548 9.190000e-42 182.0
24 TraesCS7D01G262800 chr4B 80.198 303 54 5 6 304 372571909 372571609 5.410000e-54 222.0
25 TraesCS7D01G262800 chr3A 78.502 307 58 8 1 304 118691276 118690975 1.180000e-45 195.0
26 TraesCS7D01G262800 chr3A 86.667 120 13 3 4043 4161 208723255 208723138 3.380000e-26 130.0
27 TraesCS7D01G262800 chr2B 80.081 246 48 1 47 292 271625821 271626065 9.190000e-42 182.0
28 TraesCS7D01G262800 chr2B 89.908 109 10 1 4042 4149 763291623 763291515 5.610000e-29 139.0
29 TraesCS7D01G262800 chr2D 78.125 288 58 5 11 295 160842569 160842854 1.190000e-40 178.0
30 TraesCS7D01G262800 chr4D 79.352 247 45 5 47 290 287533238 287532995 7.150000e-38 169.0
31 TraesCS7D01G262800 chr6B 86.179 123 14 3 4042 4161 693792722 693792844 3.380000e-26 130.0
32 TraesCS7D01G262800 chrUn 86.066 122 14 3 4042 4161 225713099 225713219 1.210000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G262800 chr7D 242005772 242009932 4160 True 7685.000000 7685 100.000 1 4161 1 chr7D.!!$R1 4160
1 TraesCS7D01G262800 chr7A 256006365 256010887 4522 False 1497.000000 3904 91.826 302 3321 3 chr7A.!!$F1 3019
2 TraesCS7D01G262800 chr7B 217799191 217802605 3414 True 1679.333333 2963 93.657 676 3986 3 chr7B.!!$R1 3310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.034960 GGAAGGACCCTCAAGCTTCC 60.035 60.0 0.00 0.0 34.46 3.46 F
135 136 0.034960 GAAGGACCCTCAAGCTTCCC 60.035 60.0 0.00 0.0 0.00 3.97 F
236 237 0.035439 TGCCGGAATCCAAGGAAGAC 60.035 55.0 5.05 0.0 0.00 3.01 F
339 340 0.043053 CGTCTGTCACAGTTGCGTTG 60.043 55.0 4.28 0.0 32.61 4.10 F
1113 2611 0.250513 ATCCTCGGGCAACTTCACTC 59.749 55.0 0.00 0.0 0.00 3.51 F
1229 2727 0.307760 AGAAGAAAACGGTGCGCTTG 59.692 50.0 9.73 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 2727 0.037790 AGAGAGGTTTCAGTGAGCGC 60.038 55.000 0.00 0.0 0.00 5.92 R
1765 3271 1.068948 TGCTACCAAGGCCTAAACCA 58.931 50.000 5.16 0.0 0.00 3.67 R
2187 3801 1.151668 CAGTTCAACGGAGGAGCTTG 58.848 55.000 0.00 0.0 0.00 4.01 R
2192 3806 4.773674 TCCTTAATACAGTTCAACGGAGGA 59.226 41.667 0.00 0.0 0.00 3.71 R
2879 4500 0.836606 TGGTCAGGCACAGAACAGAA 59.163 50.000 0.00 0.0 36.39 3.02 R
3207 4843 2.553602 CAAACAGCCACAGTATGCTTGA 59.446 45.455 0.00 0.0 42.53 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.622826 CCCCCAAGACGTCGGTGT 61.623 66.667 10.46 0.00 0.00 4.16
25 26 2.277591 CCCCCAAGACGTCGGTGTA 61.278 63.158 10.46 0.00 0.00 2.90
26 27 1.214589 CCCCAAGACGTCGGTGTAG 59.785 63.158 10.46 6.30 0.00 2.74
27 28 1.246056 CCCCAAGACGTCGGTGTAGA 61.246 60.000 10.46 0.00 0.00 2.59
28 29 0.815734 CCCAAGACGTCGGTGTAGAT 59.184 55.000 10.46 0.00 0.00 1.98
29 30 1.469251 CCCAAGACGTCGGTGTAGATG 60.469 57.143 10.46 0.00 0.00 2.90
30 31 1.269166 CAAGACGTCGGTGTAGATGC 58.731 55.000 10.46 0.00 0.00 3.91
31 32 0.172803 AAGACGTCGGTGTAGATGCC 59.827 55.000 10.46 0.00 0.00 4.40
48 49 2.793831 CCGAAGGCCTAACAATGGG 58.206 57.895 5.16 0.00 46.14 4.00
49 50 0.254747 CCGAAGGCCTAACAATGGGA 59.745 55.000 5.16 0.00 46.14 4.37
50 51 1.340600 CCGAAGGCCTAACAATGGGAA 60.341 52.381 5.16 0.00 46.14 3.97
51 52 1.743394 CGAAGGCCTAACAATGGGAAC 59.257 52.381 5.16 0.00 0.00 3.62
68 69 2.723231 ACCCAGTGGTAAAAACGCC 58.277 52.632 8.74 0.00 45.45 5.68
69 70 0.106619 ACCCAGTGGTAAAAACGCCA 60.107 50.000 8.74 0.00 45.45 5.69
70 71 0.312729 CCCAGTGGTAAAAACGCCAC 59.687 55.000 8.74 5.65 0.00 5.01
71 72 0.312729 CCAGTGGTAAAAACGCCACC 59.687 55.000 0.00 0.00 34.15 4.61
72 73 0.040781 CAGTGGTAAAAACGCCACCG 60.041 55.000 9.76 0.00 41.14 4.94
73 74 1.370778 GTGGTAAAAACGCCACCGC 60.371 57.895 2.54 0.00 38.22 5.68
74 75 1.526455 TGGTAAAAACGCCACCGCT 60.526 52.632 0.00 0.00 38.22 5.52
75 76 1.081708 GGTAAAAACGCCACCGCTG 60.082 57.895 0.00 0.00 38.22 5.18
76 77 1.508808 GGTAAAAACGCCACCGCTGA 61.509 55.000 0.00 0.00 38.22 4.26
77 78 0.385098 GTAAAAACGCCACCGCTGAC 60.385 55.000 0.00 0.00 38.22 3.51
78 79 0.814410 TAAAAACGCCACCGCTGACA 60.814 50.000 0.00 0.00 38.22 3.58
79 80 1.658686 AAAAACGCCACCGCTGACAA 61.659 50.000 0.00 0.00 38.22 3.18
80 81 2.331019 AAAACGCCACCGCTGACAAC 62.331 55.000 0.00 0.00 38.22 3.32
100 101 4.717629 CGACGCAACAGCCGAGGA 62.718 66.667 0.00 0.00 0.00 3.71
101 102 3.112709 GACGCAACAGCCGAGGAC 61.113 66.667 0.00 0.00 0.00 3.85
119 120 4.452733 GCCGACGACCCTGGGAAG 62.453 72.222 22.23 14.89 0.00 3.46
120 121 3.771160 CCGACGACCCTGGGAAGG 61.771 72.222 22.23 10.24 0.00 3.46
121 122 2.678934 CGACGACCCTGGGAAGGA 60.679 66.667 22.23 0.00 0.00 3.36
122 123 2.979649 GACGACCCTGGGAAGGAC 59.020 66.667 22.23 4.52 0.00 3.85
123 124 2.606826 ACGACCCTGGGAAGGACC 60.607 66.667 22.23 0.11 38.08 4.46
133 134 3.560534 GGAAGGACCCTCAAGCTTC 57.439 57.895 0.00 0.00 0.00 3.86
134 135 0.034960 GGAAGGACCCTCAAGCTTCC 60.035 60.000 0.00 0.00 34.46 3.46
135 136 0.034960 GAAGGACCCTCAAGCTTCCC 60.035 60.000 0.00 0.00 0.00 3.97
136 137 1.501654 AAGGACCCTCAAGCTTCCCC 61.502 60.000 0.00 0.00 0.00 4.81
137 138 2.231380 GGACCCTCAAGCTTCCCCA 61.231 63.158 0.00 0.00 0.00 4.96
138 139 1.301293 GACCCTCAAGCTTCCCCAG 59.699 63.158 0.00 0.00 0.00 4.45
139 140 1.464198 ACCCTCAAGCTTCCCCAGT 60.464 57.895 0.00 0.00 0.00 4.00
140 141 1.001641 CCCTCAAGCTTCCCCAGTG 60.002 63.158 0.00 0.00 0.00 3.66
141 142 1.676967 CCTCAAGCTTCCCCAGTGC 60.677 63.158 0.00 0.00 0.00 4.40
142 143 2.032528 TCAAGCTTCCCCAGTGCG 59.967 61.111 0.00 0.00 0.00 5.34
143 144 3.058160 CAAGCTTCCCCAGTGCGG 61.058 66.667 0.00 0.00 0.00 5.69
144 145 3.249189 AAGCTTCCCCAGTGCGGA 61.249 61.111 0.00 0.00 36.56 5.54
145 146 2.829384 AAGCTTCCCCAGTGCGGAA 61.829 57.895 8.94 8.94 37.04 4.30
146 147 3.056328 GCTTCCCCAGTGCGGAAC 61.056 66.667 5.09 0.15 34.40 3.62
147 148 2.429930 CTTCCCCAGTGCGGAACA 59.570 61.111 5.09 0.00 34.40 3.18
148 149 1.672356 CTTCCCCAGTGCGGAACAG 60.672 63.158 5.09 0.00 34.40 3.16
149 150 3.842925 TTCCCCAGTGCGGAACAGC 62.843 63.158 5.09 0.00 34.40 4.40
150 151 4.641645 CCCCAGTGCGGAACAGCA 62.642 66.667 0.00 0.00 45.96 4.41
156 157 2.125310 TGCGGAACAGCATACCCG 60.125 61.111 0.00 0.00 42.92 5.28
157 158 2.185867 GCGGAACAGCATACCCGA 59.814 61.111 10.98 0.00 44.29 5.14
158 159 1.448893 GCGGAACAGCATACCCGAA 60.449 57.895 10.98 0.00 44.29 4.30
159 160 1.429148 GCGGAACAGCATACCCGAAG 61.429 60.000 10.98 0.00 44.29 3.79
174 175 1.479709 CGAAGGACATCCAGAGGACT 58.520 55.000 0.00 0.00 38.89 3.85
175 176 1.827969 CGAAGGACATCCAGAGGACTT 59.172 52.381 0.00 0.00 38.89 3.01
176 177 3.024547 CGAAGGACATCCAGAGGACTTA 58.975 50.000 0.00 0.00 38.89 2.24
177 178 3.067461 CGAAGGACATCCAGAGGACTTAG 59.933 52.174 0.00 0.00 38.89 2.18
178 179 4.282496 GAAGGACATCCAGAGGACTTAGA 58.718 47.826 0.00 0.00 38.89 2.10
179 180 4.551215 AGGACATCCAGAGGACTTAGAT 57.449 45.455 0.00 0.00 38.89 1.98
180 181 4.479158 AGGACATCCAGAGGACTTAGATC 58.521 47.826 0.00 0.00 38.89 2.75
181 182 3.576550 GGACATCCAGAGGACTTAGATCC 59.423 52.174 0.00 0.00 32.98 3.36
182 183 3.576550 GACATCCAGAGGACTTAGATCCC 59.423 52.174 0.00 0.00 39.91 3.85
183 184 2.366640 TCCAGAGGACTTAGATCCCG 57.633 55.000 0.00 0.00 39.91 5.14
184 185 1.850998 TCCAGAGGACTTAGATCCCGA 59.149 52.381 0.00 0.00 39.91 5.14
185 186 2.447429 TCCAGAGGACTTAGATCCCGAT 59.553 50.000 0.00 0.00 39.91 4.18
186 187 2.560542 CCAGAGGACTTAGATCCCGATG 59.439 54.545 0.00 0.00 39.91 3.84
187 188 3.491342 CAGAGGACTTAGATCCCGATGA 58.509 50.000 0.00 0.00 39.91 2.92
188 189 3.254657 CAGAGGACTTAGATCCCGATGAC 59.745 52.174 0.00 0.00 39.91 3.06
189 190 2.559231 GAGGACTTAGATCCCGATGACC 59.441 54.545 0.00 0.00 39.91 4.02
190 191 2.178106 AGGACTTAGATCCCGATGACCT 59.822 50.000 0.00 0.00 39.91 3.85
191 192 2.559231 GGACTTAGATCCCGATGACCTC 59.441 54.545 0.00 0.00 31.94 3.85
192 193 3.492337 GACTTAGATCCCGATGACCTCT 58.508 50.000 0.00 0.00 0.00 3.69
193 194 3.892588 GACTTAGATCCCGATGACCTCTT 59.107 47.826 0.00 0.00 0.00 2.85
194 195 4.290942 ACTTAGATCCCGATGACCTCTTT 58.709 43.478 0.00 0.00 0.00 2.52
195 196 4.100189 ACTTAGATCCCGATGACCTCTTTG 59.900 45.833 0.00 0.00 0.00 2.77
196 197 1.765314 AGATCCCGATGACCTCTTTGG 59.235 52.381 0.00 0.00 42.93 3.28
197 198 1.762957 GATCCCGATGACCTCTTTGGA 59.237 52.381 0.00 0.00 39.71 3.53
198 199 1.195115 TCCCGATGACCTCTTTGGAG 58.805 55.000 0.00 0.00 39.71 3.86
206 207 3.324713 CTCTTTGGAGGGGGCGAT 58.675 61.111 0.00 0.00 36.03 4.58
207 208 1.153086 CTCTTTGGAGGGGGCGATG 60.153 63.158 0.00 0.00 36.03 3.84
208 209 1.615124 TCTTTGGAGGGGGCGATGA 60.615 57.895 0.00 0.00 0.00 2.92
209 210 1.452108 CTTTGGAGGGGGCGATGAC 60.452 63.158 0.00 0.00 0.00 3.06
210 211 2.196997 CTTTGGAGGGGGCGATGACA 62.197 60.000 0.00 0.00 0.00 3.58
211 212 1.784301 TTTGGAGGGGGCGATGACAA 61.784 55.000 0.00 0.00 0.00 3.18
212 213 1.570857 TTGGAGGGGGCGATGACAAT 61.571 55.000 0.00 0.00 0.00 2.71
213 214 1.227383 GGAGGGGGCGATGACAATT 59.773 57.895 0.00 0.00 0.00 2.32
214 215 0.472471 GGAGGGGGCGATGACAATTA 59.528 55.000 0.00 0.00 0.00 1.40
215 216 1.594331 GAGGGGGCGATGACAATTAC 58.406 55.000 0.00 0.00 0.00 1.89
216 217 0.916086 AGGGGGCGATGACAATTACA 59.084 50.000 0.00 0.00 0.00 2.41
217 218 1.494721 AGGGGGCGATGACAATTACAT 59.505 47.619 0.00 0.00 0.00 2.29
218 219 1.608590 GGGGGCGATGACAATTACATG 59.391 52.381 0.00 0.00 0.00 3.21
219 220 1.001378 GGGGCGATGACAATTACATGC 60.001 52.381 0.00 6.44 0.00 4.06
220 221 1.001378 GGGCGATGACAATTACATGCC 60.001 52.381 18.37 18.37 39.15 4.40
221 222 1.334059 GGCGATGACAATTACATGCCG 60.334 52.381 15.10 9.76 34.81 5.69
222 223 1.334059 GCGATGACAATTACATGCCGG 60.334 52.381 0.00 0.00 0.00 6.13
223 224 2.209273 CGATGACAATTACATGCCGGA 58.791 47.619 5.05 0.00 0.00 5.14
224 225 2.611751 CGATGACAATTACATGCCGGAA 59.388 45.455 5.05 0.00 0.00 4.30
225 226 3.250762 CGATGACAATTACATGCCGGAAT 59.749 43.478 5.05 0.00 0.00 3.01
226 227 4.611355 CGATGACAATTACATGCCGGAATC 60.611 45.833 5.05 0.00 0.00 2.52
227 228 2.948979 TGACAATTACATGCCGGAATCC 59.051 45.455 5.05 0.00 0.00 3.01
228 229 2.948979 GACAATTACATGCCGGAATCCA 59.051 45.455 5.05 0.00 0.00 3.41
229 230 3.360867 ACAATTACATGCCGGAATCCAA 58.639 40.909 5.05 0.00 0.00 3.53
230 231 3.381272 ACAATTACATGCCGGAATCCAAG 59.619 43.478 5.05 0.00 0.00 3.61
231 232 2.051334 TTACATGCCGGAATCCAAGG 57.949 50.000 5.05 0.00 0.00 3.61
232 233 1.208706 TACATGCCGGAATCCAAGGA 58.791 50.000 5.05 0.00 0.00 3.36
233 234 0.331278 ACATGCCGGAATCCAAGGAA 59.669 50.000 5.05 0.00 0.00 3.36
234 235 1.027357 CATGCCGGAATCCAAGGAAG 58.973 55.000 5.05 0.00 0.00 3.46
235 236 0.918983 ATGCCGGAATCCAAGGAAGA 59.081 50.000 5.05 0.00 0.00 2.87
236 237 0.035439 TGCCGGAATCCAAGGAAGAC 60.035 55.000 5.05 0.00 0.00 3.01
237 238 1.090052 GCCGGAATCCAAGGAAGACG 61.090 60.000 5.05 0.00 0.00 4.18
238 239 0.535335 CCGGAATCCAAGGAAGACGA 59.465 55.000 0.00 0.00 0.00 4.20
239 240 1.471676 CCGGAATCCAAGGAAGACGAG 60.472 57.143 0.00 0.22 0.00 4.18
240 241 1.476891 CGGAATCCAAGGAAGACGAGA 59.523 52.381 0.00 0.00 0.00 4.04
241 242 2.480416 CGGAATCCAAGGAAGACGAGAG 60.480 54.545 0.00 0.00 0.00 3.20
242 243 2.545731 GAATCCAAGGAAGACGAGAGC 58.454 52.381 0.00 0.00 0.00 4.09
243 244 0.827368 ATCCAAGGAAGACGAGAGCC 59.173 55.000 0.00 0.00 0.00 4.70
244 245 0.251832 TCCAAGGAAGACGAGAGCCT 60.252 55.000 0.00 0.00 0.00 4.58
245 246 0.174617 CCAAGGAAGACGAGAGCCTC 59.825 60.000 0.00 0.00 0.00 4.70
262 263 3.111405 TCGGCATCGAGGACTATGT 57.889 52.632 0.00 0.00 40.88 2.29
263 264 0.952280 TCGGCATCGAGGACTATGTC 59.048 55.000 0.00 0.00 40.88 3.06
264 265 0.386100 CGGCATCGAGGACTATGTCG 60.386 60.000 0.00 0.00 43.73 4.35
265 266 0.669077 GGCATCGAGGACTATGTCGT 59.331 55.000 0.00 0.00 37.46 4.34
266 267 1.335142 GGCATCGAGGACTATGTCGTC 60.335 57.143 0.00 9.51 41.98 4.20
271 272 4.247781 GGACTATGTCGTCCCCGA 57.752 61.111 0.00 0.00 46.19 5.14
272 273 2.496942 GGACTATGTCGTCCCCGAA 58.503 57.895 0.00 0.00 46.19 4.30
273 274 0.384669 GGACTATGTCGTCCCCGAAG 59.615 60.000 0.00 0.00 46.19 3.79
274 275 1.386533 GACTATGTCGTCCCCGAAGA 58.613 55.000 0.00 0.00 46.26 2.87
275 276 1.065251 GACTATGTCGTCCCCGAAGAC 59.935 57.143 1.40 1.40 46.26 3.01
276 277 0.384669 CTATGTCGTCCCCGAAGACC 59.615 60.000 5.47 0.00 46.26 3.85
277 278 1.039233 TATGTCGTCCCCGAAGACCC 61.039 60.000 5.47 0.00 46.26 4.46
278 279 2.679287 GTCGTCCCCGAAGACCCT 60.679 66.667 0.00 0.00 46.26 4.34
279 280 2.118951 TCGTCCCCGAAGACCCTT 59.881 61.111 0.00 0.00 40.86 3.95
280 281 1.534717 TCGTCCCCGAAGACCCTTT 60.535 57.895 0.00 0.00 40.86 3.11
281 282 1.079336 CGTCCCCGAAGACCCTTTC 60.079 63.158 0.00 0.00 35.63 2.62
291 292 2.171341 AGACCCTTTCGAACAAGAGC 57.829 50.000 0.00 0.00 0.00 4.09
292 293 0.790814 GACCCTTTCGAACAAGAGCG 59.209 55.000 0.00 0.00 0.00 5.03
293 294 1.228657 ACCCTTTCGAACAAGAGCGC 61.229 55.000 0.00 0.00 0.00 5.92
294 295 0.951040 CCCTTTCGAACAAGAGCGCT 60.951 55.000 11.27 11.27 0.00 5.92
295 296 0.440371 CCTTTCGAACAAGAGCGCTC 59.560 55.000 30.01 30.01 0.00 5.03
296 297 0.440371 CTTTCGAACAAGAGCGCTCC 59.560 55.000 32.94 16.60 0.00 4.70
297 298 0.949105 TTTCGAACAAGAGCGCTCCC 60.949 55.000 32.94 11.28 0.00 4.30
298 299 3.181967 CGAACAAGAGCGCTCCCG 61.182 66.667 32.94 25.44 37.57 5.14
299 300 2.815647 GAACAAGAGCGCTCCCGG 60.816 66.667 32.94 23.69 34.32 5.73
323 324 2.347755 GCCTGAACTCGTAAAATCCGTC 59.652 50.000 0.00 0.00 0.00 4.79
331 332 3.571571 TCGTAAAATCCGTCTGTCACAG 58.428 45.455 0.00 0.00 0.00 3.66
337 338 1.591594 CCGTCTGTCACAGTTGCGT 60.592 57.895 4.28 0.00 32.61 5.24
338 339 1.151777 CCGTCTGTCACAGTTGCGTT 61.152 55.000 4.28 0.00 32.61 4.84
339 340 0.043053 CGTCTGTCACAGTTGCGTTG 60.043 55.000 4.28 0.00 32.61 4.10
343 344 0.934496 TGTCACAGTTGCGTTGTAGC 59.066 50.000 0.00 0.00 37.71 3.58
362 363 5.903010 TGTAGCTAGGATCAACCCTTATTCA 59.097 40.000 0.00 0.00 40.05 2.57
373 374 5.605488 TCAACCCTTATTCATACCCCTACTC 59.395 44.000 0.00 0.00 0.00 2.59
379 380 6.212993 CCTTATTCATACCCCTACTCCTTACC 59.787 46.154 0.00 0.00 0.00 2.85
384 385 1.077663 ACCCCTACTCCTTACCGTCAA 59.922 52.381 0.00 0.00 0.00 3.18
404 405 4.282195 TCAAAATAATCCCCACAACACCAC 59.718 41.667 0.00 0.00 0.00 4.16
405 406 3.534357 AATAATCCCCACAACACCACA 57.466 42.857 0.00 0.00 0.00 4.17
421 422 4.055360 CACCACACTTGTCGAGATAACAA 58.945 43.478 0.00 0.00 35.44 2.83
435 436 8.219769 GTCGAGATAACAATGCTAGATTGAATG 58.780 37.037 16.77 1.10 33.51 2.67
448 449 2.042686 TTGAATGCCTCAAGATCCCG 57.957 50.000 0.00 0.00 39.20 5.14
453 454 0.984230 TGCCTCAAGATCCCGAAAGT 59.016 50.000 0.00 0.00 0.00 2.66
455 456 1.927895 CCTCAAGATCCCGAAAGTCG 58.072 55.000 0.00 0.00 40.07 4.18
459 460 2.823747 TCAAGATCCCGAAAGTCGAAGA 59.176 45.455 0.00 0.00 43.74 2.87
490 491 3.272334 GGGCGCGTCATCACATCC 61.272 66.667 14.93 0.00 0.00 3.51
498 499 3.466836 GCGTCATCACATCCCAAGATAA 58.533 45.455 0.00 0.00 0.00 1.75
499 500 3.496130 GCGTCATCACATCCCAAGATAAG 59.504 47.826 0.00 0.00 0.00 1.73
501 502 4.712476 GTCATCACATCCCAAGATAAGCT 58.288 43.478 0.00 0.00 0.00 3.74
502 503 5.509670 CGTCATCACATCCCAAGATAAGCTA 60.510 44.000 0.00 0.00 0.00 3.32
505 518 4.298626 TCACATCCCAAGATAAGCTACCT 58.701 43.478 0.00 0.00 0.00 3.08
509 522 4.755266 TCCCAAGATAAGCTACCTTGTC 57.245 45.455 16.46 0.00 38.90 3.18
517 530 1.196012 AGCTACCTTGTCTGCTACCC 58.804 55.000 0.00 0.00 33.64 3.69
612 625 9.262358 AGAATAAATCGGAATAGTTTGAGCTAC 57.738 33.333 0.00 0.00 0.00 3.58
616 629 5.854010 TCGGAATAGTTTGAGCTACTGAT 57.146 39.130 0.00 0.00 0.00 2.90
632 654 6.094603 AGCTACTGATTTTACATTCCTTGCAG 59.905 38.462 0.00 0.00 0.00 4.41
637 659 5.243507 TGATTTTACATTCCTTGCAGCAGAA 59.756 36.000 0.00 0.00 0.00 3.02
642 664 2.490328 TTCCTTGCAGCAGAAAAACG 57.510 45.000 0.00 0.00 0.00 3.60
643 665 1.674359 TCCTTGCAGCAGAAAAACGA 58.326 45.000 0.00 0.00 0.00 3.85
658 2120 6.640499 CAGAAAAACGAGAAATACAAATGCCA 59.360 34.615 0.00 0.00 0.00 4.92
668 2130 7.602753 AGAAATACAAATGCCAAGTAACCTTC 58.397 34.615 0.00 0.00 0.00 3.46
673 2135 2.356665 TGCCAAGTAACCTTCTGCAA 57.643 45.000 0.00 0.00 34.34 4.08
747 2209 0.407528 TATCACAGCCCAGCCCAAAA 59.592 50.000 0.00 0.00 0.00 2.44
752 2214 0.532640 CAGCCCAGCCCAAAACAAAC 60.533 55.000 0.00 0.00 0.00 2.93
1113 2611 0.250513 ATCCTCGGGCAACTTCACTC 59.749 55.000 0.00 0.00 0.00 3.51
1115 2613 1.006102 CTCGGGCAACTTCACTCGT 60.006 57.895 0.00 0.00 0.00 4.18
1127 2625 0.459585 TCACTCGTATCTTTGCCGCC 60.460 55.000 0.00 0.00 0.00 6.13
1152 2650 1.134818 TGCGAGCCACTGATTATCGTT 60.135 47.619 0.00 0.00 35.87 3.85
1229 2727 0.307760 AGAAGAAAACGGTGCGCTTG 59.692 50.000 9.73 0.00 0.00 4.01
1339 2838 0.882927 CCAACCCGCTGTTCGAGAAA 60.883 55.000 0.00 0.00 41.67 2.52
1577 3079 2.758423 TCCATGCTAAGCTCGTACTGAA 59.242 45.455 0.00 0.00 0.00 3.02
1578 3080 3.384789 TCCATGCTAAGCTCGTACTGAAT 59.615 43.478 0.00 0.00 0.00 2.57
1582 3084 5.578005 TGCTAAGCTCGTACTGAATAAGT 57.422 39.130 0.00 0.00 43.40 2.24
1583 3085 6.688637 TGCTAAGCTCGTACTGAATAAGTA 57.311 37.500 0.00 0.00 40.56 2.24
1613 3115 7.255208 GGAACTAGGATAGCTACTAGACACAAC 60.255 44.444 19.93 8.09 44.39 3.32
1654 3156 7.760340 ACTCAAATCTTAGATAACGTTCTCACC 59.240 37.037 15.13 0.00 0.00 4.02
1682 3184 7.824779 GTGGGTCTATAGTTTTCTCTCATTTGT 59.175 37.037 0.00 0.00 0.00 2.83
1718 3220 5.484290 ACATGGCAACCTACTTAAGTACTCT 59.516 40.000 11.38 0.00 0.00 3.24
1746 3248 7.769044 ACCTATTTAGTTACCAGCTGTATGTTG 59.231 37.037 13.81 0.00 0.00 3.33
1847 3459 2.089980 TGCTAGACTTACGACCCTGTC 58.910 52.381 0.00 0.00 0.00 3.51
1849 3461 2.490903 GCTAGACTTACGACCCTGTCAA 59.509 50.000 0.00 0.00 32.09 3.18
1956 3568 7.327761 GTCAATTGGCATCAGAATTATATGCAC 59.672 37.037 4.85 9.42 46.18 4.57
1966 3578 0.464735 TTATATGCACGGCCACCACC 60.465 55.000 2.24 0.00 0.00 4.61
1979 3591 1.302511 ACCACCGGTGCTGTGATTC 60.303 57.895 29.75 0.00 35.74 2.52
2182 3796 6.113411 ACCGATCCCAACTAGTTTCATAAAG 58.887 40.000 5.07 0.00 0.00 1.85
2187 3801 7.916914 TCCCAACTAGTTTCATAAAGCTTAC 57.083 36.000 5.07 0.00 0.00 2.34
2235 3852 4.651503 AGGAGTAATGGAGGTGTATGTCAG 59.348 45.833 0.00 0.00 0.00 3.51
2377 3998 7.662897 TGTTAACTGACCAACTTTCAAACTTT 58.337 30.769 7.22 0.00 0.00 2.66
2501 4122 1.760029 GGGAAAACTGTTGAGGCCAAA 59.240 47.619 5.01 0.00 33.49 3.28
2578 4199 4.218417 GGCATGTTCTTCTGCTTTCCTTTA 59.782 41.667 0.00 0.00 38.45 1.85
2634 4255 7.928908 TGCACTTTGTTGATAATTCAAGTTC 57.071 32.000 0.00 0.00 42.41 3.01
2879 4500 4.712476 AGATTGTTCACAAGAAGACTGCT 58.288 39.130 0.00 0.00 39.47 4.24
2954 4575 5.559148 AGATCCTTGAGGCTATTAAGGTG 57.441 43.478 18.57 1.94 41.32 4.00
2985 4621 6.150140 GGCTATGATGTATTGGTTTCCATCTC 59.850 42.308 0.00 0.00 35.76 2.75
2998 4634 5.449725 GGTTTCCATCTCTGCTGCTTATTTC 60.450 44.000 0.00 0.00 0.00 2.17
3207 4843 6.897966 TCTATTCCTCATCCTTGAGTAGTGTT 59.102 38.462 2.61 0.00 46.71 3.32
3241 4877 1.538849 GCTGTTTGGCTCCAGTTTTGG 60.539 52.381 0.00 0.00 46.49 3.28
3339 4975 5.912528 AGTATTTTTGTCGAACACGTCATC 58.087 37.500 0.00 0.00 0.00 2.92
3361 4997 0.948678 GGCTGCCAAACGTTAAGTGA 59.051 50.000 15.17 0.00 0.00 3.41
3383 5021 4.559862 AGTATTCTTCAGACAAGGGTGG 57.440 45.455 0.00 0.00 0.00 4.61
3398 5036 1.963515 GGGTGGCAAAACATTCAGAGT 59.036 47.619 0.00 0.00 0.00 3.24
3403 5041 5.009610 GGTGGCAAAACATTCAGAGTTCTTA 59.990 40.000 0.00 0.00 0.00 2.10
3406 5044 5.631096 GGCAAAACATTCAGAGTTCTTAAGC 59.369 40.000 0.00 0.00 0.00 3.09
3428 5067 0.836400 GGGTCCTGACAACTCCCAGA 60.836 60.000 0.00 0.00 38.15 3.86
3486 5125 5.907866 GGAAAACCTTCCGGATAAAATCA 57.092 39.130 4.15 0.00 41.89 2.57
3487 5126 6.275494 GGAAAACCTTCCGGATAAAATCAA 57.725 37.500 4.15 0.00 41.89 2.57
3488 5127 6.693466 GGAAAACCTTCCGGATAAAATCAAA 58.307 36.000 4.15 0.00 41.89 2.69
3489 5128 6.811665 GGAAAACCTTCCGGATAAAATCAAAG 59.188 38.462 4.15 0.00 41.89 2.77
3490 5129 6.911250 AAACCTTCCGGATAAAATCAAAGT 57.089 33.333 4.15 0.00 0.00 2.66
3491 5130 6.510879 AACCTTCCGGATAAAATCAAAGTC 57.489 37.500 4.15 0.00 0.00 3.01
3492 5131 5.816682 ACCTTCCGGATAAAATCAAAGTCT 58.183 37.500 4.15 0.00 0.00 3.24
3493 5132 6.246163 ACCTTCCGGATAAAATCAAAGTCTT 58.754 36.000 4.15 0.00 0.00 3.01
3494 5133 6.374613 ACCTTCCGGATAAAATCAAAGTCTTC 59.625 38.462 4.15 0.00 0.00 2.87
3495 5134 6.183360 CCTTCCGGATAAAATCAAAGTCTTCC 60.183 42.308 4.15 0.00 0.00 3.46
3496 5135 6.062258 TCCGGATAAAATCAAAGTCTTCCT 57.938 37.500 0.00 0.00 0.00 3.36
3513 5152 1.705186 TCCTAAGTTGCTGCTTCCCTT 59.295 47.619 0.00 0.47 0.00 3.95
3530 5169 1.005805 CCTTGGTGATCCATTGGACCA 59.994 52.381 7.76 9.10 43.91 4.02
3578 5217 2.156098 CTCCTCGTACTCTAGGGATGC 58.844 57.143 0.00 0.00 33.40 3.91
3618 5261 0.399233 GCCCCACTCTGATAGTCCCT 60.399 60.000 0.00 0.00 35.76 4.20
3619 5262 1.972207 GCCCCACTCTGATAGTCCCTT 60.972 57.143 0.00 0.00 35.76 3.95
3620 5263 1.765314 CCCCACTCTGATAGTCCCTTG 59.235 57.143 0.00 0.00 35.76 3.61
3621 5264 2.626950 CCCCACTCTGATAGTCCCTTGA 60.627 54.545 0.00 0.00 35.76 3.02
3622 5265 3.312890 CCCACTCTGATAGTCCCTTGAT 58.687 50.000 0.00 0.00 35.76 2.57
3623 5266 4.483950 CCCACTCTGATAGTCCCTTGATA 58.516 47.826 0.00 0.00 35.76 2.15
3624 5267 4.901849 CCCACTCTGATAGTCCCTTGATAA 59.098 45.833 0.00 0.00 35.76 1.75
3625 5268 5.366768 CCCACTCTGATAGTCCCTTGATAAA 59.633 44.000 0.00 0.00 35.76 1.40
3626 5269 6.463614 CCCACTCTGATAGTCCCTTGATAAAG 60.464 46.154 0.00 0.00 35.76 1.85
3627 5270 6.463614 CCACTCTGATAGTCCCTTGATAAAGG 60.464 46.154 1.11 1.11 35.76 3.11
3628 5271 6.098982 CACTCTGATAGTCCCTTGATAAAGGT 59.901 42.308 8.14 0.00 35.76 3.50
3629 5272 7.287927 CACTCTGATAGTCCCTTGATAAAGGTA 59.712 40.741 8.14 0.00 35.76 3.08
3654 5297 0.324943 GGAGAGGGCACTGCTGTTTA 59.675 55.000 0.00 0.00 0.00 2.01
3731 5377 9.959721 ATCAGGTGAATGTTTGTAAGTAGTAAT 57.040 29.630 0.00 0.00 0.00 1.89
3805 5451 6.617371 ACATACCCTGAGAAGGTAAAGATGAT 59.383 38.462 0.00 0.00 42.99 2.45
3806 5452 7.127955 ACATACCCTGAGAAGGTAAAGATGATT 59.872 37.037 0.00 0.00 42.99 2.57
3807 5453 8.651389 CATACCCTGAGAAGGTAAAGATGATTA 58.349 37.037 0.00 0.00 42.99 1.75
3808 5454 7.698163 ACCCTGAGAAGGTAAAGATGATTAT 57.302 36.000 0.00 0.00 35.24 1.28
3809 5455 7.512992 ACCCTGAGAAGGTAAAGATGATTATG 58.487 38.462 0.00 0.00 35.24 1.90
3810 5456 7.127955 ACCCTGAGAAGGTAAAGATGATTATGT 59.872 37.037 0.00 0.00 35.24 2.29
3811 5457 7.995488 CCCTGAGAAGGTAAAGATGATTATGTT 59.005 37.037 0.00 0.00 0.00 2.71
3812 5458 9.401058 CCTGAGAAGGTAAAGATGATTATGTTT 57.599 33.333 0.00 0.00 34.54 2.83
3814 5460 9.958180 TGAGAAGGTAAAGATGATTATGTTTCA 57.042 29.630 0.00 0.00 32.64 2.69
3862 5549 7.332926 GGTTTCTATCAATCATCGCTCATGTAT 59.667 37.037 0.00 0.00 33.66 2.29
3893 5580 5.462068 GTGACAACAAGCAAATAGAAAACCC 59.538 40.000 0.00 0.00 0.00 4.11
3913 5602 8.902540 AAACCCTAAATTGAAAAATGAGGAAC 57.097 30.769 0.00 0.00 0.00 3.62
3925 5614 2.570415 TGAGGAACGGTAAATTGGCA 57.430 45.000 0.00 0.00 0.00 4.92
3953 5642 4.194640 CTGGAGATGGTACCACAAATCAG 58.805 47.826 19.09 16.51 32.44 2.90
3979 5668 0.806868 CCTAGTGCCACAATGTGCAG 59.193 55.000 8.05 0.00 31.34 4.41
3986 5675 2.203337 ACAATGTGCAGTGGCGGT 60.203 55.556 4.67 0.00 45.35 5.68
3987 5676 1.827789 ACAATGTGCAGTGGCGGTT 60.828 52.632 4.67 0.00 45.35 4.44
3988 5677 1.372004 CAATGTGCAGTGGCGGTTG 60.372 57.895 0.00 0.00 45.35 3.77
3989 5678 3.211564 AATGTGCAGTGGCGGTTGC 62.212 57.895 0.00 1.34 45.35 4.17
3990 5679 4.873810 TGTGCAGTGGCGGTTGCT 62.874 61.111 8.73 0.00 45.35 3.91
3991 5680 4.332637 GTGCAGTGGCGGTTGCTG 62.333 66.667 8.73 0.00 45.35 4.41
3994 5683 4.034258 CAGTGGCGGTTGCTGCTG 62.034 66.667 0.00 0.00 42.25 4.41
3999 5688 4.712425 GCGGTTGCTGCTGGCTTG 62.712 66.667 0.00 0.00 42.39 4.01
4000 5689 4.712425 CGGTTGCTGCTGGCTTGC 62.712 66.667 0.00 0.00 42.39 4.01
4001 5690 3.608662 GGTTGCTGCTGGCTTGCA 61.609 61.111 0.00 8.94 42.39 4.08
4002 5691 2.418356 GTTGCTGCTGGCTTGCAA 59.582 55.556 16.95 16.95 42.83 4.08
4003 5692 1.663702 GTTGCTGCTGGCTTGCAAG 60.664 57.895 22.44 22.44 45.55 4.01
4004 5693 2.863346 TTGCTGCTGGCTTGCAAGG 61.863 57.895 27.10 12.31 42.83 3.61
4005 5694 4.065281 GCTGCTGGCTTGCAAGGG 62.065 66.667 27.10 4.86 42.83 3.95
4006 5695 4.065281 CTGCTGGCTTGCAAGGGC 62.065 66.667 27.10 19.31 42.83 5.19
4029 5718 4.875713 GCCGGCCGGGTGAATGAT 62.876 66.667 43.31 0.00 38.44 2.45
4030 5719 2.901840 CCGGCCGGGTGAATGATG 60.902 66.667 37.42 6.27 0.00 3.07
4031 5720 2.189257 CGGCCGGGTGAATGATGA 59.811 61.111 20.10 0.00 0.00 2.92
4032 5721 1.451207 CGGCCGGGTGAATGATGAA 60.451 57.895 20.10 0.00 0.00 2.57
4033 5722 1.714899 CGGCCGGGTGAATGATGAAC 61.715 60.000 20.10 0.00 0.00 3.18
4034 5723 0.394352 GGCCGGGTGAATGATGAACT 60.394 55.000 2.18 0.00 0.00 3.01
4035 5724 1.134220 GGCCGGGTGAATGATGAACTA 60.134 52.381 2.18 0.00 0.00 2.24
4036 5725 2.487265 GGCCGGGTGAATGATGAACTAT 60.487 50.000 2.18 0.00 0.00 2.12
4037 5726 3.214328 GCCGGGTGAATGATGAACTATT 58.786 45.455 2.18 0.00 0.00 1.73
4038 5727 3.632145 GCCGGGTGAATGATGAACTATTT 59.368 43.478 2.18 0.00 0.00 1.40
4039 5728 4.097892 GCCGGGTGAATGATGAACTATTTT 59.902 41.667 2.18 0.00 0.00 1.82
4040 5729 5.581605 CCGGGTGAATGATGAACTATTTTG 58.418 41.667 0.00 0.00 0.00 2.44
4041 5730 5.125417 CCGGGTGAATGATGAACTATTTTGT 59.875 40.000 0.00 0.00 0.00 2.83
4042 5731 6.350110 CCGGGTGAATGATGAACTATTTTGTT 60.350 38.462 0.00 0.00 0.00 2.83
4043 5732 7.090173 CGGGTGAATGATGAACTATTTTGTTT 58.910 34.615 0.00 0.00 0.00 2.83
4044 5733 7.598493 CGGGTGAATGATGAACTATTTTGTTTT 59.402 33.333 0.00 0.00 0.00 2.43
4045 5734 9.271828 GGGTGAATGATGAACTATTTTGTTTTT 57.728 29.630 0.00 0.00 0.00 1.94
4098 5787 9.445786 TGATTAACTTTTCTCAAATTCGTGAAC 57.554 29.630 0.00 0.00 0.00 3.18
4099 5788 9.665264 GATTAACTTTTCTCAAATTCGTGAACT 57.335 29.630 0.00 0.00 0.00 3.01
4101 5790 7.971004 AACTTTTCTCAAATTCGTGAACTTC 57.029 32.000 0.00 0.00 0.00 3.01
4102 5791 7.321745 ACTTTTCTCAAATTCGTGAACTTCT 57.678 32.000 0.00 0.00 0.00 2.85
4103 5792 7.762382 ACTTTTCTCAAATTCGTGAACTTCTT 58.238 30.769 0.00 0.00 0.00 2.52
4104 5793 8.244113 ACTTTTCTCAAATTCGTGAACTTCTTT 58.756 29.630 0.00 0.00 0.00 2.52
4105 5794 8.980143 TTTTCTCAAATTCGTGAACTTCTTTT 57.020 26.923 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.221906 CTACACCGACGTCTTGGGGG 62.222 65.000 14.70 11.32 30.93 5.40
8 9 1.214589 CTACACCGACGTCTTGGGG 59.785 63.158 14.70 12.10 33.76 4.96
9 10 0.815734 ATCTACACCGACGTCTTGGG 59.184 55.000 14.70 10.20 0.00 4.12
10 11 1.909376 CATCTACACCGACGTCTTGG 58.091 55.000 14.70 10.97 0.00 3.61
11 12 1.269166 GCATCTACACCGACGTCTTG 58.731 55.000 14.70 12.79 0.00 3.02
12 13 0.172803 GGCATCTACACCGACGTCTT 59.827 55.000 14.70 0.00 0.00 3.01
13 14 1.807886 GGCATCTACACCGACGTCT 59.192 57.895 14.70 0.00 0.00 4.18
14 15 4.396854 GGCATCTACACCGACGTC 57.603 61.111 5.18 5.18 0.00 4.34
30 31 0.254747 TCCCATTGTTAGGCCTTCGG 59.745 55.000 12.58 2.45 0.00 4.30
31 32 1.743394 GTTCCCATTGTTAGGCCTTCG 59.257 52.381 12.58 0.00 0.00 3.79
32 33 2.100197 GGTTCCCATTGTTAGGCCTTC 58.900 52.381 12.58 5.51 0.00 3.46
33 34 1.273041 GGGTTCCCATTGTTAGGCCTT 60.273 52.381 12.58 0.00 0.00 4.35
34 35 0.335019 GGGTTCCCATTGTTAGGCCT 59.665 55.000 11.78 11.78 0.00 5.19
35 36 0.040499 TGGGTTCCCATTGTTAGGCC 59.960 55.000 6.46 0.00 0.00 5.19
36 37 1.272480 ACTGGGTTCCCATTGTTAGGC 60.272 52.381 11.26 0.00 35.33 3.93
37 38 2.446435 CACTGGGTTCCCATTGTTAGG 58.554 52.381 16.79 5.12 35.33 2.69
38 39 2.446435 CCACTGGGTTCCCATTGTTAG 58.554 52.381 21.23 8.66 35.73 2.34
39 40 2.595750 CCACTGGGTTCCCATTGTTA 57.404 50.000 21.23 0.00 35.73 2.41
40 41 3.455737 CCACTGGGTTCCCATTGTT 57.544 52.632 21.23 2.61 35.73 2.83
51 52 2.721945 TGGCGTTTTTACCACTGGG 58.278 52.632 0.00 0.00 41.29 4.45
56 57 1.526455 AGCGGTGGCGTTTTTACCA 60.526 52.632 0.00 0.00 46.35 3.25
57 58 1.081708 CAGCGGTGGCGTTTTTACC 60.082 57.895 6.74 0.00 46.35 2.85
58 59 0.385098 GTCAGCGGTGGCGTTTTTAC 60.385 55.000 15.67 0.00 46.35 2.01
59 60 0.814410 TGTCAGCGGTGGCGTTTTTA 60.814 50.000 15.24 0.00 46.35 1.52
60 61 1.658686 TTGTCAGCGGTGGCGTTTTT 61.659 50.000 15.24 0.00 46.35 1.94
61 62 2.115911 TTGTCAGCGGTGGCGTTTT 61.116 52.632 15.24 0.00 46.35 2.43
62 63 2.515057 TTGTCAGCGGTGGCGTTT 60.515 55.556 15.24 0.00 46.35 3.60
63 64 3.276846 GTTGTCAGCGGTGGCGTT 61.277 61.111 15.24 0.00 46.35 4.84
73 74 3.334751 TTGCGTCGCCGTTGTCAG 61.335 61.111 15.88 0.00 36.15 3.51
74 75 3.632107 GTTGCGTCGCCGTTGTCA 61.632 61.111 15.88 0.00 36.15 3.58
75 76 3.558282 CTGTTGCGTCGCCGTTGTC 62.558 63.158 15.88 0.00 36.15 3.18
76 77 3.636043 CTGTTGCGTCGCCGTTGT 61.636 61.111 15.88 0.00 36.15 3.32
83 84 4.717629 TCCTCGGCTGTTGCGTCG 62.718 66.667 0.00 0.00 40.82 5.12
84 85 3.112709 GTCCTCGGCTGTTGCGTC 61.113 66.667 0.00 0.00 40.82 5.19
102 103 4.452733 CTTCCCAGGGTCGTCGGC 62.453 72.222 5.01 0.00 0.00 5.54
103 104 3.771160 CCTTCCCAGGGTCGTCGG 61.771 72.222 5.01 0.00 36.36 4.79
104 105 2.678934 TCCTTCCCAGGGTCGTCG 60.679 66.667 5.01 0.00 41.25 5.12
105 106 2.657066 GGTCCTTCCCAGGGTCGTC 61.657 68.421 5.01 0.00 41.25 4.20
106 107 2.606826 GGTCCTTCCCAGGGTCGT 60.607 66.667 5.01 0.00 41.25 4.34
115 116 0.034960 GGAAGCTTGAGGGTCCTTCC 60.035 60.000 2.10 2.87 44.43 3.46
116 117 0.034960 GGGAAGCTTGAGGGTCCTTC 60.035 60.000 2.10 0.00 34.43 3.46
117 118 1.501654 GGGGAAGCTTGAGGGTCCTT 61.502 60.000 2.10 0.00 0.00 3.36
118 119 1.925972 GGGGAAGCTTGAGGGTCCT 60.926 63.158 2.10 0.00 0.00 3.85
119 120 2.203549 CTGGGGAAGCTTGAGGGTCC 62.204 65.000 2.10 0.00 0.00 4.46
120 121 1.301293 CTGGGGAAGCTTGAGGGTC 59.699 63.158 2.10 0.00 0.00 4.46
121 122 1.464198 ACTGGGGAAGCTTGAGGGT 60.464 57.895 2.10 0.00 0.00 4.34
122 123 1.001641 CACTGGGGAAGCTTGAGGG 60.002 63.158 2.10 0.00 0.00 4.30
123 124 1.676967 GCACTGGGGAAGCTTGAGG 60.677 63.158 2.10 0.00 0.00 3.86
124 125 2.037136 CGCACTGGGGAAGCTTGAG 61.037 63.158 2.10 0.00 0.00 3.02
125 126 2.032528 CGCACTGGGGAAGCTTGA 59.967 61.111 2.10 0.00 0.00 3.02
126 127 3.058160 CCGCACTGGGGAAGCTTG 61.058 66.667 2.10 0.00 37.91 4.01
127 128 3.249189 TCCGCACTGGGGAAGCTT 61.249 61.111 12.34 0.00 41.69 3.74
132 133 4.329545 GCTGTTCCGCACTGGGGA 62.330 66.667 10.76 10.76 42.93 4.81
133 134 2.535485 TATGCTGTTCCGCACTGGGG 62.535 60.000 5.75 5.75 43.61 4.96
134 135 1.078497 TATGCTGTTCCGCACTGGG 60.078 57.895 0.00 0.00 43.61 4.45
135 136 1.369091 GGTATGCTGTTCCGCACTGG 61.369 60.000 0.00 0.00 43.61 4.00
136 137 1.369091 GGGTATGCTGTTCCGCACTG 61.369 60.000 0.00 0.00 43.61 3.66
137 138 1.078426 GGGTATGCTGTTCCGCACT 60.078 57.895 0.00 0.00 43.61 4.40
138 139 2.461110 CGGGTATGCTGTTCCGCAC 61.461 63.158 0.00 0.00 43.61 5.34
139 140 2.125310 CGGGTATGCTGTTCCGCA 60.125 61.111 0.00 0.00 45.10 5.69
140 141 1.429148 CTTCGGGTATGCTGTTCCGC 61.429 60.000 0.00 0.00 41.98 5.54
141 142 0.810031 CCTTCGGGTATGCTGTTCCG 60.810 60.000 0.00 0.00 43.42 4.30
142 143 0.539986 TCCTTCGGGTATGCTGTTCC 59.460 55.000 0.00 0.00 36.28 3.62
143 144 1.066430 TGTCCTTCGGGTATGCTGTTC 60.066 52.381 0.00 0.00 36.28 3.18
144 145 0.981183 TGTCCTTCGGGTATGCTGTT 59.019 50.000 0.00 0.00 36.28 3.16
145 146 1.139058 GATGTCCTTCGGGTATGCTGT 59.861 52.381 0.00 0.00 36.28 4.40
146 147 1.541233 GGATGTCCTTCGGGTATGCTG 60.541 57.143 0.00 0.00 36.28 4.41
147 148 0.759346 GGATGTCCTTCGGGTATGCT 59.241 55.000 0.00 0.00 36.28 3.79
148 149 0.468226 TGGATGTCCTTCGGGTATGC 59.532 55.000 0.09 0.00 36.82 3.14
149 150 2.036475 CTCTGGATGTCCTTCGGGTATG 59.964 54.545 0.09 0.00 36.82 2.39
150 151 2.320781 CTCTGGATGTCCTTCGGGTAT 58.679 52.381 0.09 0.00 36.82 2.73
151 152 1.688311 CCTCTGGATGTCCTTCGGGTA 60.688 57.143 0.09 0.00 36.82 3.69
152 153 0.978146 CCTCTGGATGTCCTTCGGGT 60.978 60.000 0.09 0.00 36.82 5.28
153 154 0.687757 TCCTCTGGATGTCCTTCGGG 60.688 60.000 0.09 0.00 36.82 5.14
154 155 0.461961 GTCCTCTGGATGTCCTTCGG 59.538 60.000 0.09 0.00 36.82 4.30
155 156 1.479709 AGTCCTCTGGATGTCCTTCG 58.520 55.000 0.09 0.00 36.82 3.79
156 157 4.282496 TCTAAGTCCTCTGGATGTCCTTC 58.718 47.826 0.09 0.00 36.82 3.46
157 158 4.338795 TCTAAGTCCTCTGGATGTCCTT 57.661 45.455 0.09 0.00 36.82 3.36
158 159 4.479158 GATCTAAGTCCTCTGGATGTCCT 58.521 47.826 0.09 0.00 36.82 3.85
159 160 3.576550 GGATCTAAGTCCTCTGGATGTCC 59.423 52.174 0.00 0.00 35.32 4.02
160 161 3.576550 GGGATCTAAGTCCTCTGGATGTC 59.423 52.174 0.00 0.00 38.38 3.06
161 162 3.582164 GGGATCTAAGTCCTCTGGATGT 58.418 50.000 0.00 0.00 38.38 3.06
162 163 2.560542 CGGGATCTAAGTCCTCTGGATG 59.439 54.545 0.00 0.00 38.38 3.51
163 164 2.447429 TCGGGATCTAAGTCCTCTGGAT 59.553 50.000 0.00 0.00 38.38 3.41
164 165 1.850998 TCGGGATCTAAGTCCTCTGGA 59.149 52.381 0.00 0.00 38.38 3.86
165 166 2.366640 TCGGGATCTAAGTCCTCTGG 57.633 55.000 0.00 0.00 38.38 3.86
166 167 3.254657 GTCATCGGGATCTAAGTCCTCTG 59.745 52.174 0.00 0.00 38.38 3.35
167 168 3.492337 GTCATCGGGATCTAAGTCCTCT 58.508 50.000 0.00 0.00 38.38 3.69
168 169 2.559231 GGTCATCGGGATCTAAGTCCTC 59.441 54.545 0.00 0.00 38.38 3.71
169 170 2.178106 AGGTCATCGGGATCTAAGTCCT 59.822 50.000 0.00 0.00 34.34 3.85
170 171 2.559231 GAGGTCATCGGGATCTAAGTCC 59.441 54.545 0.00 0.00 37.00 3.85
171 172 3.492337 AGAGGTCATCGGGATCTAAGTC 58.508 50.000 0.00 0.00 37.00 3.01
172 173 3.603965 AGAGGTCATCGGGATCTAAGT 57.396 47.619 0.00 0.00 37.00 2.24
173 174 4.502259 CCAAAGAGGTCATCGGGATCTAAG 60.502 50.000 0.00 0.00 37.00 2.18
174 175 3.388024 CCAAAGAGGTCATCGGGATCTAA 59.612 47.826 0.00 0.00 37.00 2.10
175 176 2.965831 CCAAAGAGGTCATCGGGATCTA 59.034 50.000 0.00 0.00 37.00 1.98
176 177 1.765314 CCAAAGAGGTCATCGGGATCT 59.235 52.381 0.00 0.00 40.60 2.75
177 178 1.762957 TCCAAAGAGGTCATCGGGATC 59.237 52.381 0.00 0.00 39.02 3.36
178 179 1.765314 CTCCAAAGAGGTCATCGGGAT 59.235 52.381 0.00 0.00 39.02 3.85
179 180 1.195115 CTCCAAAGAGGTCATCGGGA 58.805 55.000 0.00 0.00 39.02 5.14
180 181 3.768633 CTCCAAAGAGGTCATCGGG 57.231 57.895 0.00 0.00 39.02 5.14
189 190 1.153086 CATCGCCCCCTCCAAAGAG 60.153 63.158 0.00 0.00 40.09 2.85
190 191 1.615124 TCATCGCCCCCTCCAAAGA 60.615 57.895 0.00 0.00 0.00 2.52
191 192 1.452108 GTCATCGCCCCCTCCAAAG 60.452 63.158 0.00 0.00 0.00 2.77
192 193 1.784301 TTGTCATCGCCCCCTCCAAA 61.784 55.000 0.00 0.00 0.00 3.28
193 194 1.570857 ATTGTCATCGCCCCCTCCAA 61.571 55.000 0.00 0.00 0.00 3.53
194 195 1.570857 AATTGTCATCGCCCCCTCCA 61.571 55.000 0.00 0.00 0.00 3.86
195 196 0.472471 TAATTGTCATCGCCCCCTCC 59.528 55.000 0.00 0.00 0.00 4.30
196 197 1.134220 TGTAATTGTCATCGCCCCCTC 60.134 52.381 0.00 0.00 0.00 4.30
197 198 0.916086 TGTAATTGTCATCGCCCCCT 59.084 50.000 0.00 0.00 0.00 4.79
198 199 1.608590 CATGTAATTGTCATCGCCCCC 59.391 52.381 0.00 0.00 0.00 5.40
199 200 1.001378 GCATGTAATTGTCATCGCCCC 60.001 52.381 0.00 0.00 0.00 5.80
200 201 1.001378 GGCATGTAATTGTCATCGCCC 60.001 52.381 17.32 8.01 35.53 6.13
201 202 1.334059 CGGCATGTAATTGTCATCGCC 60.334 52.381 17.72 17.72 36.79 5.54
202 203 1.334059 CCGGCATGTAATTGTCATCGC 60.334 52.381 0.00 0.96 0.00 4.58
203 204 2.209273 TCCGGCATGTAATTGTCATCG 58.791 47.619 0.00 0.00 0.00 3.84
204 205 4.320494 GGATTCCGGCATGTAATTGTCATC 60.320 45.833 0.00 0.00 0.00 2.92
205 206 3.569701 GGATTCCGGCATGTAATTGTCAT 59.430 43.478 0.00 0.00 0.00 3.06
206 207 2.948979 GGATTCCGGCATGTAATTGTCA 59.051 45.455 0.00 0.00 0.00 3.58
207 208 2.948979 TGGATTCCGGCATGTAATTGTC 59.051 45.455 0.00 0.00 0.00 3.18
208 209 3.011566 TGGATTCCGGCATGTAATTGT 57.988 42.857 0.00 0.00 0.00 2.71
209 210 3.243501 CCTTGGATTCCGGCATGTAATTG 60.244 47.826 0.00 0.00 0.00 2.32
210 211 2.958355 CCTTGGATTCCGGCATGTAATT 59.042 45.455 0.00 0.00 0.00 1.40
211 212 2.174639 TCCTTGGATTCCGGCATGTAAT 59.825 45.455 0.00 0.00 0.00 1.89
212 213 1.562008 TCCTTGGATTCCGGCATGTAA 59.438 47.619 0.00 0.00 0.00 2.41
213 214 1.208706 TCCTTGGATTCCGGCATGTA 58.791 50.000 0.00 0.00 0.00 2.29
214 215 0.331278 TTCCTTGGATTCCGGCATGT 59.669 50.000 0.00 0.00 0.00 3.21
215 216 1.027357 CTTCCTTGGATTCCGGCATG 58.973 55.000 0.00 0.00 0.00 4.06
216 217 0.918983 TCTTCCTTGGATTCCGGCAT 59.081 50.000 0.00 0.00 0.00 4.40
217 218 0.035439 GTCTTCCTTGGATTCCGGCA 60.035 55.000 0.00 0.00 0.00 5.69
218 219 1.090052 CGTCTTCCTTGGATTCCGGC 61.090 60.000 0.00 0.00 0.00 6.13
219 220 0.535335 TCGTCTTCCTTGGATTCCGG 59.465 55.000 0.00 0.00 0.00 5.14
220 221 1.476891 TCTCGTCTTCCTTGGATTCCG 59.523 52.381 0.00 0.00 0.00 4.30
221 222 2.740256 GCTCTCGTCTTCCTTGGATTCC 60.740 54.545 0.00 0.00 0.00 3.01
222 223 2.545731 GCTCTCGTCTTCCTTGGATTC 58.454 52.381 0.00 0.00 0.00 2.52
223 224 1.208293 GGCTCTCGTCTTCCTTGGATT 59.792 52.381 0.00 0.00 0.00 3.01
224 225 0.827368 GGCTCTCGTCTTCCTTGGAT 59.173 55.000 0.00 0.00 0.00 3.41
225 226 0.251832 AGGCTCTCGTCTTCCTTGGA 60.252 55.000 0.00 0.00 0.00 3.53
226 227 0.174617 GAGGCTCTCGTCTTCCTTGG 59.825 60.000 7.40 0.00 0.00 3.61
227 228 3.731295 GAGGCTCTCGTCTTCCTTG 57.269 57.895 7.40 0.00 0.00 3.61
244 245 0.952280 GACATAGTCCTCGATGCCGA 59.048 55.000 0.00 0.00 43.35 5.54
245 246 0.386100 CGACATAGTCCTCGATGCCG 60.386 60.000 0.00 0.00 31.45 5.69
246 247 0.669077 ACGACATAGTCCTCGATGCC 59.331 55.000 0.00 0.00 33.96 4.40
247 248 2.039327 GACGACATAGTCCTCGATGC 57.961 55.000 0.00 0.00 35.22 3.91
264 265 1.079336 CGAAAGGGTCTTCGGGGAC 60.079 63.158 0.00 1.10 43.51 4.46
265 266 0.832983 TTCGAAAGGGTCTTCGGGGA 60.833 55.000 0.00 0.00 46.44 4.81
266 267 0.672711 GTTCGAAAGGGTCTTCGGGG 60.673 60.000 0.00 0.00 46.44 5.73
267 268 0.034337 TGTTCGAAAGGGTCTTCGGG 59.966 55.000 0.00 0.00 46.44 5.14
268 269 1.798813 CTTGTTCGAAAGGGTCTTCGG 59.201 52.381 0.00 0.00 46.44 4.30
270 271 2.480802 GCTCTTGTTCGAAAGGGTCTTC 59.519 50.000 0.00 0.00 29.74 2.87
271 272 2.495084 GCTCTTGTTCGAAAGGGTCTT 58.505 47.619 0.00 0.00 29.74 3.01
272 273 1.605712 CGCTCTTGTTCGAAAGGGTCT 60.606 52.381 0.00 0.00 29.74 3.85
273 274 0.790814 CGCTCTTGTTCGAAAGGGTC 59.209 55.000 0.00 0.00 29.74 4.46
274 275 1.228657 GCGCTCTTGTTCGAAAGGGT 61.229 55.000 0.00 0.00 29.74 4.34
275 276 0.951040 AGCGCTCTTGTTCGAAAGGG 60.951 55.000 2.64 3.16 0.00 3.95
276 277 0.440371 GAGCGCTCTTGTTCGAAAGG 59.560 55.000 29.88 0.00 0.00 3.11
277 278 0.440371 GGAGCGCTCTTGTTCGAAAG 59.560 55.000 34.46 0.00 0.00 2.62
278 279 0.949105 GGGAGCGCTCTTGTTCGAAA 60.949 55.000 34.46 0.00 0.00 3.46
279 280 1.374252 GGGAGCGCTCTTGTTCGAA 60.374 57.895 34.46 0.00 0.00 3.71
280 281 2.261671 GGGAGCGCTCTTGTTCGA 59.738 61.111 34.46 0.00 0.00 3.71
281 282 3.181967 CGGGAGCGCTCTTGTTCG 61.182 66.667 34.46 24.32 0.00 3.95
282 283 2.815647 CCGGGAGCGCTCTTGTTC 60.816 66.667 34.46 18.65 0.00 3.18
297 298 3.636313 TTACGAGTTCAGGCCGCCG 62.636 63.158 3.05 0.00 0.00 6.46
298 299 0.952010 TTTTACGAGTTCAGGCCGCC 60.952 55.000 0.00 0.00 0.00 6.13
299 300 1.062148 GATTTTACGAGTTCAGGCCGC 59.938 52.381 0.00 0.00 0.00 6.53
300 301 1.664151 GGATTTTACGAGTTCAGGCCG 59.336 52.381 0.00 0.00 0.00 6.13
305 306 4.232221 GACAGACGGATTTTACGAGTTCA 58.768 43.478 0.00 0.00 34.93 3.18
323 324 1.070577 GCTACAACGCAACTGTGACAG 60.071 52.381 11.70 11.70 37.52 3.51
331 332 2.888594 TGATCCTAGCTACAACGCAAC 58.111 47.619 0.00 0.00 0.00 4.17
337 338 6.385759 TGAATAAGGGTTGATCCTAGCTACAA 59.614 38.462 0.00 0.00 35.80 2.41
338 339 5.903010 TGAATAAGGGTTGATCCTAGCTACA 59.097 40.000 0.00 0.00 35.80 2.74
339 340 6.420913 TGAATAAGGGTTGATCCTAGCTAC 57.579 41.667 0.00 0.00 35.80 3.58
343 344 6.296489 GGGGTATGAATAAGGGTTGATCCTAG 60.296 46.154 0.00 0.00 35.80 3.02
362 363 2.515429 TGACGGTAAGGAGTAGGGGTAT 59.485 50.000 0.00 0.00 0.00 2.73
373 374 4.337274 GTGGGGATTATTTTGACGGTAAGG 59.663 45.833 0.00 0.00 0.00 2.69
379 380 4.481463 GTGTTGTGGGGATTATTTTGACG 58.519 43.478 0.00 0.00 0.00 4.35
384 385 3.576550 GTGTGGTGTTGTGGGGATTATTT 59.423 43.478 0.00 0.00 0.00 1.40
404 405 6.036470 TCTAGCATTGTTATCTCGACAAGTG 58.964 40.000 0.00 0.00 40.04 3.16
405 406 6.208988 TCTAGCATTGTTATCTCGACAAGT 57.791 37.500 0.00 0.00 40.04 3.16
421 422 5.045012 TCTTGAGGCATTCAATCTAGCAT 57.955 39.130 3.70 0.00 44.48 3.79
435 436 1.657822 GACTTTCGGGATCTTGAGGC 58.342 55.000 0.00 0.00 0.00 4.70
443 444 1.477295 GGAGTCTTCGACTTTCGGGAT 59.523 52.381 0.00 0.00 43.53 3.85
448 449 3.388345 ACCTTGGAGTCTTCGACTTTC 57.612 47.619 0.00 0.00 43.53 2.62
478 479 3.496130 GCTTATCTTGGGATGTGATGACG 59.504 47.826 0.00 0.00 33.71 4.35
498 499 1.196012 GGGTAGCAGACAAGGTAGCT 58.804 55.000 0.00 0.00 39.28 3.32
499 500 0.178301 GGGGTAGCAGACAAGGTAGC 59.822 60.000 0.00 0.00 38.77 3.58
501 502 2.116238 GATGGGGTAGCAGACAAGGTA 58.884 52.381 0.00 0.00 0.00 3.08
502 503 0.912486 GATGGGGTAGCAGACAAGGT 59.088 55.000 0.00 0.00 0.00 3.50
505 518 3.153919 GTTTTGATGGGGTAGCAGACAA 58.846 45.455 0.00 0.00 0.00 3.18
509 522 3.809832 CGATAGTTTTGATGGGGTAGCAG 59.190 47.826 0.00 0.00 0.00 4.24
571 584 7.920151 CCGATTTATTCTATGGCATGTTTCAAA 59.080 33.333 10.98 5.64 0.00 2.69
572 585 7.284261 TCCGATTTATTCTATGGCATGTTTCAA 59.716 33.333 10.98 0.00 0.00 2.69
595 608 6.910536 AAATCAGTAGCTCAAACTATTCCG 57.089 37.500 0.00 0.00 0.00 4.30
610 623 5.709631 TGCTGCAAGGAATGTAAAATCAGTA 59.290 36.000 0.00 0.00 0.00 2.74
612 625 5.063180 TGCTGCAAGGAATGTAAAATCAG 57.937 39.130 0.00 0.00 0.00 2.90
616 629 5.528043 TTTCTGCTGCAAGGAATGTAAAA 57.472 34.783 3.02 0.00 29.53 1.52
632 654 6.399986 GGCATTTGTATTTCTCGTTTTTCTGC 60.400 38.462 0.00 0.00 0.00 4.26
637 659 6.512297 ACTTGGCATTTGTATTTCTCGTTTT 58.488 32.000 0.00 0.00 0.00 2.43
642 664 7.158099 AGGTTACTTGGCATTTGTATTTCTC 57.842 36.000 0.00 0.00 0.00 2.87
643 665 7.451566 AGAAGGTTACTTGGCATTTGTATTTCT 59.548 33.333 0.00 1.26 36.97 2.52
658 2120 3.496870 CCTGGTCTTGCAGAAGGTTACTT 60.497 47.826 0.00 0.00 40.34 2.24
668 2130 0.825010 AAACAGGCCTGGTCTTGCAG 60.825 55.000 35.42 8.62 34.19 4.41
673 2135 3.392616 CCATATCTAAACAGGCCTGGTCT 59.607 47.826 35.42 21.71 34.19 3.85
747 2209 4.221703 AGAAGATGATGAGAGGTCGTTTGT 59.778 41.667 0.00 0.00 0.00 2.83
752 2214 2.100418 TGCAGAAGATGATGAGAGGTCG 59.900 50.000 0.00 0.00 0.00 4.79
883 2381 2.897969 GGGCTAGTTCGATAAGATGGGA 59.102 50.000 0.00 0.00 0.00 4.37
887 2385 8.532819 CCTTTATAAGGGCTAGTTCGATAAGAT 58.467 37.037 0.00 0.00 45.27 2.40
1104 2602 2.993899 CGGCAAAGATACGAGTGAAGTT 59.006 45.455 0.00 0.00 0.00 2.66
1113 2611 4.279535 CGCGGCGGCAAAGATACG 62.280 66.667 15.84 0.00 39.92 3.06
1152 2650 3.273434 CCTGCAAGATTCGGATCAAGAA 58.727 45.455 6.44 5.51 34.07 2.52
1229 2727 0.037790 AGAGAGGTTTCAGTGAGCGC 60.038 55.000 0.00 0.00 0.00 5.92
1578 3080 9.391227 AGTAGCTATCCTAGTTCCTAGTACTTA 57.609 37.037 0.00 0.00 32.62 2.24
1582 3084 9.034800 GTCTAGTAGCTATCCTAGTTCCTAGTA 57.965 40.741 14.74 0.00 32.62 1.82
1583 3085 7.513436 TGTCTAGTAGCTATCCTAGTTCCTAGT 59.487 40.741 14.74 0.00 32.62 2.57
1584 3086 7.820872 GTGTCTAGTAGCTATCCTAGTTCCTAG 59.179 44.444 14.74 9.47 33.81 3.02
1613 3115 1.679139 TGAGTCTGTTGCACAAAGGG 58.321 50.000 0.00 0.00 0.00 3.95
1654 3156 6.531503 TGAGAGAAAACTATAGACCCACAG 57.468 41.667 6.78 0.00 0.00 3.66
1718 3220 7.125204 ACATACAGCTGGTAACTAAATAGGTGA 59.875 37.037 19.93 0.00 39.44 4.02
1746 3248 5.824904 ACCAATGAGCAATGACATAAGTC 57.175 39.130 0.00 0.00 45.19 3.01
1759 3265 1.478105 CCAAGGCCTAAACCAATGAGC 59.522 52.381 5.16 0.00 0.00 4.26
1760 3266 2.807676 ACCAAGGCCTAAACCAATGAG 58.192 47.619 5.16 0.00 0.00 2.90
1761 3267 2.990740 ACCAAGGCCTAAACCAATGA 57.009 45.000 5.16 0.00 0.00 2.57
1762 3268 2.427095 GCTACCAAGGCCTAAACCAATG 59.573 50.000 5.16 0.00 0.00 2.82
1763 3269 2.042433 TGCTACCAAGGCCTAAACCAAT 59.958 45.455 5.16 0.00 0.00 3.16
1764 3270 1.425831 TGCTACCAAGGCCTAAACCAA 59.574 47.619 5.16 0.00 0.00 3.67
1765 3271 1.068948 TGCTACCAAGGCCTAAACCA 58.931 50.000 5.16 0.00 0.00 3.67
1847 3459 7.424803 TCAAACAGTTTGGATGTATTGACTTG 58.575 34.615 23.14 0.00 40.98 3.16
1849 3461 7.448161 TCATCAAACAGTTTGGATGTATTGACT 59.552 33.333 23.14 0.00 40.98 3.41
1938 3550 3.426695 GGCCGTGCATATAATTCTGATGC 60.427 47.826 10.64 10.64 45.02 3.91
1966 3578 1.934589 TAATCCGAATCACAGCACCG 58.065 50.000 0.00 0.00 0.00 4.94
2067 3681 5.538849 TGACCCTCCCAAACAAAATAAAC 57.461 39.130 0.00 0.00 0.00 2.01
2100 3714 2.976185 TCCTTGACAACACATACTGGGA 59.024 45.455 0.00 0.00 0.00 4.37
2107 3721 7.448161 TGATTACTTCAATCCTTGACAACACAT 59.552 33.333 0.00 0.00 42.17 3.21
2111 3725 8.134895 TGTTTGATTACTTCAATCCTTGACAAC 58.865 33.333 0.00 0.00 43.73 3.32
2187 3801 1.151668 CAGTTCAACGGAGGAGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
2191 3805 5.105473 TCCTTAATACAGTTCAACGGAGGAG 60.105 44.000 0.00 0.00 0.00 3.69
2192 3806 4.773674 TCCTTAATACAGTTCAACGGAGGA 59.226 41.667 0.00 0.00 0.00 3.71
2193 3807 5.080969 TCCTTAATACAGTTCAACGGAGG 57.919 43.478 0.00 0.00 0.00 4.30
2253 3870 8.145767 CCACAATGCCATAAGATGATTTACAAT 58.854 33.333 0.00 0.00 0.00 2.71
2338 3958 5.023452 TCAGTTAACAGAGAATAGCAGGGA 58.977 41.667 8.61 0.00 0.00 4.20
2501 4122 5.105756 GCCATACTTCACAACTATTGGCTTT 60.106 40.000 3.47 0.00 35.98 3.51
2589 4210 4.502950 GCAAGATAAGTCTATCAGCTGCCT 60.503 45.833 9.47 0.84 37.05 4.75
2634 4255 2.015736 ACTCTGCAAGAAGGCATACG 57.984 50.000 3.37 0.00 46.34 3.06
2879 4500 0.836606 TGGTCAGGCACAGAACAGAA 59.163 50.000 0.00 0.00 36.39 3.02
2954 4575 3.149196 CCAATACATCATAGCCCCACAC 58.851 50.000 0.00 0.00 0.00 3.82
2985 4621 4.268884 GGTTAGTCGAGAAATAAGCAGCAG 59.731 45.833 0.00 0.00 0.00 4.24
2998 4634 7.982371 ATTAGTCAATAAACGGTTAGTCGAG 57.018 36.000 0.00 0.00 0.00 4.04
3207 4843 2.553602 CAAACAGCCACAGTATGCTTGA 59.446 45.455 0.00 0.00 42.53 3.02
3241 4877 7.250569 TGTCTCAGACAAACAAAAATGACTTC 58.749 34.615 4.55 0.00 39.78 3.01
3339 4975 0.165944 CTTAACGTTTGGCAGCCTCG 59.834 55.000 14.15 16.50 0.00 4.63
3361 4997 4.807643 GCCACCCTTGTCTGAAGAATACTT 60.808 45.833 0.00 0.00 39.24 2.24
3383 5021 6.442112 AGCTTAAGAACTCTGAATGTTTTGC 58.558 36.000 6.67 0.00 0.00 3.68
3398 5036 3.786553 TGTCAGGACCCTAGCTTAAGAA 58.213 45.455 6.67 0.00 0.00 2.52
3403 5041 1.903183 GAGTTGTCAGGACCCTAGCTT 59.097 52.381 0.00 0.00 0.00 3.74
3406 5044 1.196012 GGGAGTTGTCAGGACCCTAG 58.804 60.000 0.00 0.00 37.75 3.02
3428 5067 3.157881 TGAGGACAAGTTCGATCTCAGT 58.842 45.455 0.00 0.00 0.00 3.41
3486 5125 4.092116 AGCAGCAACTTAGGAAGACTTT 57.908 40.909 0.00 0.00 0.00 2.66
3487 5126 3.778954 AGCAGCAACTTAGGAAGACTT 57.221 42.857 0.00 0.00 0.00 3.01
3488 5127 3.558109 GGAAGCAGCAACTTAGGAAGACT 60.558 47.826 0.00 0.00 0.00 3.24
3489 5128 2.744741 GGAAGCAGCAACTTAGGAAGAC 59.255 50.000 0.00 0.00 0.00 3.01
3490 5129 2.290323 GGGAAGCAGCAACTTAGGAAGA 60.290 50.000 0.00 0.00 0.00 2.87
3491 5130 2.087646 GGGAAGCAGCAACTTAGGAAG 58.912 52.381 0.00 0.00 0.00 3.46
3492 5131 1.705186 AGGGAAGCAGCAACTTAGGAA 59.295 47.619 0.00 0.00 0.00 3.36
3493 5132 1.362224 AGGGAAGCAGCAACTTAGGA 58.638 50.000 0.00 0.00 0.00 2.94
3494 5133 1.815003 CAAGGGAAGCAGCAACTTAGG 59.185 52.381 0.00 0.00 0.00 2.69
3495 5134 1.815003 CCAAGGGAAGCAGCAACTTAG 59.185 52.381 0.00 0.00 0.00 2.18
3496 5135 1.144913 ACCAAGGGAAGCAGCAACTTA 59.855 47.619 0.00 0.00 0.00 2.24
3513 5152 3.420705 GGCTGGTCCAATGGATCACCA 62.421 57.143 21.37 16.60 37.99 4.17
3530 5169 2.047061 TGTTCTAGTGGTTCAGTGGCT 58.953 47.619 0.00 0.00 0.00 4.75
3578 5217 3.458189 CCTCAGGCCATACTAGAAAACG 58.542 50.000 5.01 0.00 0.00 3.60
3618 5261 5.425539 CCCTCTCCTTCACTACCTTTATCAA 59.574 44.000 0.00 0.00 0.00 2.57
3619 5262 4.962995 CCCTCTCCTTCACTACCTTTATCA 59.037 45.833 0.00 0.00 0.00 2.15
3620 5263 4.202274 GCCCTCTCCTTCACTACCTTTATC 60.202 50.000 0.00 0.00 0.00 1.75
3621 5264 3.712218 GCCCTCTCCTTCACTACCTTTAT 59.288 47.826 0.00 0.00 0.00 1.40
3622 5265 3.105283 GCCCTCTCCTTCACTACCTTTA 58.895 50.000 0.00 0.00 0.00 1.85
3623 5266 1.909986 GCCCTCTCCTTCACTACCTTT 59.090 52.381 0.00 0.00 0.00 3.11
3624 5267 1.203313 TGCCCTCTCCTTCACTACCTT 60.203 52.381 0.00 0.00 0.00 3.50
3625 5268 0.413832 TGCCCTCTCCTTCACTACCT 59.586 55.000 0.00 0.00 0.00 3.08
3626 5269 0.537653 GTGCCCTCTCCTTCACTACC 59.462 60.000 0.00 0.00 0.00 3.18
3627 5270 1.205893 CAGTGCCCTCTCCTTCACTAC 59.794 57.143 0.00 0.00 37.66 2.73
3628 5271 1.561643 CAGTGCCCTCTCCTTCACTA 58.438 55.000 0.00 0.00 37.66 2.74
3629 5272 1.835927 GCAGTGCCCTCTCCTTCACT 61.836 60.000 2.85 0.00 40.08 3.41
3654 5297 5.599656 CCACCCTGGATTCAAATCATATTGT 59.400 40.000 0.00 0.00 40.96 2.71
3709 5355 8.512138 AGCAATTACTACTTACAAACATTCACC 58.488 33.333 0.00 0.00 0.00 4.02
3731 5377 4.826733 TCTTTTATGCCAAACTGAGAGCAA 59.173 37.500 0.00 0.00 38.99 3.91
3811 5457 9.859427 CCAGTTTCTTATTGCAGAATTATTGAA 57.141 29.630 0.00 0.00 32.69 2.69
3812 5458 9.023962 ACCAGTTTCTTATTGCAGAATTATTGA 57.976 29.630 0.00 0.00 32.69 2.57
3813 5459 9.643693 AACCAGTTTCTTATTGCAGAATTATTG 57.356 29.630 0.00 0.00 32.69 1.90
3815 5461 9.860898 GAAACCAGTTTCTTATTGCAGAATTAT 57.139 29.630 14.55 0.00 44.03 1.28
3852 5498 4.620982 TGTCACTATCCAATACATGAGCG 58.379 43.478 0.00 0.00 0.00 5.03
3862 5549 6.939730 TCTATTTGCTTGTTGTCACTATCCAA 59.060 34.615 0.00 0.00 0.00 3.53
3893 5580 9.685828 TTTACCGTTCCTCATTTTTCAATTTAG 57.314 29.630 0.00 0.00 0.00 1.85
3913 5602 2.327568 CAGCAACTTGCCAATTTACCG 58.672 47.619 10.25 0.00 46.52 4.02
3925 5614 1.985159 TGGTACCATCTCCAGCAACTT 59.015 47.619 11.60 0.00 0.00 2.66
3986 5675 2.732016 CTTGCAAGCCAGCAGCAA 59.268 55.556 14.65 17.61 46.54 3.91
3987 5676 3.299977 CCTTGCAAGCCAGCAGCA 61.300 61.111 21.43 5.79 46.54 4.41
3988 5677 4.065281 CCCTTGCAAGCCAGCAGC 62.065 66.667 21.43 0.00 46.54 5.25
3989 5678 4.065281 GCCCTTGCAAGCCAGCAG 62.065 66.667 21.43 6.05 46.54 4.24
4012 5701 4.875713 ATCATTCACCCGGCCGGC 62.876 66.667 39.46 21.18 33.26 6.13
4013 5702 2.884997 TTCATCATTCACCCGGCCGG 62.885 60.000 37.99 37.99 37.81 6.13
4014 5703 1.451207 TTCATCATTCACCCGGCCG 60.451 57.895 21.04 21.04 0.00 6.13
4015 5704 0.394352 AGTTCATCATTCACCCGGCC 60.394 55.000 0.00 0.00 0.00 6.13
4016 5705 2.325583 TAGTTCATCATTCACCCGGC 57.674 50.000 0.00 0.00 0.00 6.13
4017 5706 5.125417 ACAAAATAGTTCATCATTCACCCGG 59.875 40.000 0.00 0.00 0.00 5.73
4018 5707 6.194796 ACAAAATAGTTCATCATTCACCCG 57.805 37.500 0.00 0.00 0.00 5.28
4019 5708 8.831715 AAAACAAAATAGTTCATCATTCACCC 57.168 30.769 0.00 0.00 0.00 4.61
4072 5761 9.445786 GTTCACGAATTTGAGAAAAGTTAATCA 57.554 29.630 7.08 0.00 0.00 2.57
4073 5762 9.665264 AGTTCACGAATTTGAGAAAAGTTAATC 57.335 29.630 7.08 0.00 0.00 1.75
4075 5764 9.498307 GAAGTTCACGAATTTGAGAAAAGTTAA 57.502 29.630 7.08 0.00 0.00 2.01
4076 5765 8.889717 AGAAGTTCACGAATTTGAGAAAAGTTA 58.110 29.630 5.50 0.00 0.00 2.24
4077 5766 7.762382 AGAAGTTCACGAATTTGAGAAAAGTT 58.238 30.769 5.50 2.68 0.00 2.66
4078 5767 7.321745 AGAAGTTCACGAATTTGAGAAAAGT 57.678 32.000 5.50 0.00 0.00 2.66
4079 5768 8.620533 AAAGAAGTTCACGAATTTGAGAAAAG 57.379 30.769 5.50 0.00 0.00 2.27
4080 5769 8.980143 AAAAGAAGTTCACGAATTTGAGAAAA 57.020 26.923 5.50 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.