Multiple sequence alignment - TraesCS7D01G262400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G262400 chr7D 100.000 4525 0 0 1 4525 241100275 241095751 0.000000e+00 8357.0
1 TraesCS7D01G262400 chr7A 90.005 2021 119 37 1 1965 257354126 257356119 0.000000e+00 2536.0
2 TraesCS7D01G262400 chr7A 94.675 1521 47 19 2591 4079 257358266 257359784 0.000000e+00 2329.0
3 TraesCS7D01G262400 chr7A 89.251 521 36 11 1972 2482 257356218 257356728 6.390000e-178 634.0
4 TraesCS7D01G262400 chr7B 93.031 1564 44 19 2632 4136 216679826 216678269 0.000000e+00 2224.0
5 TraesCS7D01G262400 chr7B 93.271 1278 48 16 707 1965 216682179 216680921 0.000000e+00 1849.0
6 TraesCS7D01G262400 chr7B 87.767 515 27 10 1973 2481 216680698 216680214 1.830000e-158 569.0
7 TraesCS7D01G262400 chr7B 80.818 709 77 21 1 683 216682850 216682175 6.760000e-138 501.0
8 TraesCS7D01G262400 chr5B 92.800 125 8 1 4377 4501 380330153 380330030 3.600000e-41 180.0
9 TraesCS7D01G262400 chr5D 82.540 189 33 0 2660 2848 393801908 393801720 2.800000e-37 167.0
10 TraesCS7D01G262400 chr3B 85.870 92 11 2 2767 2857 437909594 437909684 3.730000e-16 97.1
11 TraesCS7D01G262400 chr3D 84.375 96 13 2 2767 2861 339303994 339304088 4.820000e-15 93.5
12 TraesCS7D01G262400 chr3D 82.500 80 12 2 2758 2836 170659613 170659691 8.120000e-08 69.4
13 TraesCS7D01G262400 chr6D 86.154 65 9 0 2792 2856 72405988 72406052 2.260000e-08 71.3
14 TraesCS7D01G262400 chr6A 86.154 65 9 0 2792 2856 89303007 89303071 2.260000e-08 71.3
15 TraesCS7D01G262400 chr3A 82.500 80 12 2 2758 2836 208222062 208222140 8.120000e-08 69.4
16 TraesCS7D01G262400 chr2B 97.297 37 1 0 3096 3132 793446505 793446469 3.780000e-06 63.9
17 TraesCS7D01G262400 chr2A 97.297 37 1 0 3096 3132 768306236 768306200 3.780000e-06 63.9
18 TraesCS7D01G262400 chr2A 97.297 37 1 0 3096 3132 768429915 768429951 3.780000e-06 63.9
19 TraesCS7D01G262400 chr2D 97.222 36 1 0 3096 3131 643468066 643468031 1.360000e-05 62.1
20 TraesCS7D01G262400 chr4A 94.737 38 2 0 4339 4376 584034435 584034398 4.890000e-05 60.2
21 TraesCS7D01G262400 chr4B 81.818 66 12 0 4459 4524 629961730 629961665 6.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G262400 chr7D 241095751 241100275 4524 True 8357.00 8357 100.000000 1 4525 1 chr7D.!!$R1 4524
1 TraesCS7D01G262400 chr7A 257354126 257359784 5658 False 1833.00 2536 91.310333 1 4079 3 chr7A.!!$F1 4078
2 TraesCS7D01G262400 chr7B 216678269 216682850 4581 True 1285.75 2224 88.721750 1 4136 4 chr7B.!!$R1 4135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 871 0.527565 CCAAATCCTGAAGCGGGTTG 59.472 55.0 0.00 0.0 0.00 3.77 F
1513 1559 0.036022 GCTCCAACTGTTCTCCAGCT 59.964 55.0 0.00 0.0 45.68 4.24 F
1947 2017 0.319297 TCGCCGCAGATCATCATCAG 60.319 55.0 0.00 0.0 0.00 2.90 F
2936 4912 0.463116 CCCTGCGCCCTACGTAAATT 60.463 55.0 4.18 0.0 46.11 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2017 0.955919 AAGCAAACGTAGAGCTGGGC 60.956 55.000 9.64 0.0 38.86 5.36 R
2894 4870 1.066858 TCAGAACTGAAGGACGATGCC 60.067 52.381 1.79 0.0 36.53 4.40 R
3437 5413 1.536922 CCCACCTTCATCATCGACTCG 60.537 57.143 0.00 0.0 0.00 4.18 R
4430 6453 0.172578 GGGTTATCGGCAAAACAGGC 59.827 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.529389 GGAGGTGGTGGGAGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
146 151 7.645058 TCAAACTCTTTCAAGATGAAAACCT 57.355 32.000 6.93 0.00 44.69 3.50
158 163 3.170791 TGAAAACCTCGCATGCAAAAA 57.829 38.095 19.57 0.00 0.00 1.94
172 177 6.233500 GCATGCAAAAATTTCTTTAGCGTAC 58.766 36.000 14.21 0.00 31.63 3.67
195 200 3.991121 GCGAATATGTCTTAGGGAAGCTC 59.009 47.826 0.00 0.00 32.21 4.09
197 202 4.985409 CGAATATGTCTTAGGGAAGCTCAC 59.015 45.833 0.00 0.00 32.21 3.51
218 248 2.447443 GGAAACTTCAATGGGAGTCCC 58.553 52.381 22.54 22.54 45.71 4.46
267 297 4.020573 ACATCAGTTGAGGACGGTTTATGA 60.021 41.667 0.26 0.00 0.00 2.15
274 304 4.430007 TGAGGACGGTTTATGAGATTTCG 58.570 43.478 0.00 0.00 0.00 3.46
280 310 5.183228 ACGGTTTATGAGATTTCGGACATT 58.817 37.500 0.00 0.00 0.00 2.71
356 386 1.828979 GGTTTGTAGGGCGATTTGGA 58.171 50.000 0.00 0.00 0.00 3.53
394 424 2.490991 ACGTGTAAGCCAAAGGAGTTC 58.509 47.619 0.00 0.00 0.00 3.01
398 428 4.151867 CGTGTAAGCCAAAGGAGTTCTTAC 59.848 45.833 0.00 0.00 39.43 2.34
488 519 9.023962 TCCATATTCTATTGCCCAATGTTTATC 57.976 33.333 3.85 0.00 32.50 1.75
551 582 7.298122 ACTATGTCAATCACAAACGAACAATC 58.702 34.615 0.00 0.00 38.97 2.67
555 586 7.698628 TGTCAATCACAAACGAACAATCTAAA 58.301 30.769 0.00 0.00 29.30 1.85
556 587 8.349245 TGTCAATCACAAACGAACAATCTAAAT 58.651 29.630 0.00 0.00 29.30 1.40
560 591 8.874745 ATCACAAACGAACAATCTAAATAACG 57.125 30.769 0.00 0.00 0.00 3.18
561 592 6.793203 TCACAAACGAACAATCTAAATAACGC 59.207 34.615 0.00 0.00 0.00 4.84
562 593 6.575572 CACAAACGAACAATCTAAATAACGCA 59.424 34.615 0.00 0.00 0.00 5.24
635 666 2.365105 TCGGGGAGGAAGCGGATT 60.365 61.111 0.00 0.00 0.00 3.01
665 696 7.629157 TGAAGATTATCCTGTCAACCATGTTA 58.371 34.615 0.00 0.00 0.00 2.41
703 734 6.906157 ATTTCACCTGAACTGATGAATTGT 57.094 33.333 0.00 0.00 33.13 2.71
749 782 7.642071 TCAACATTTCAGCTTATTTTTCAGC 57.358 32.000 0.00 0.00 36.16 4.26
792 826 0.661020 CGTCGGCAGTGGAAACTTTT 59.339 50.000 0.00 0.00 0.00 2.27
837 871 0.527565 CCAAATCCTGAAGCGGGTTG 59.472 55.000 0.00 0.00 0.00 3.77
975 1009 2.186903 CCCCTTCCATCGACCACG 59.813 66.667 0.00 0.00 41.26 4.94
1072 1109 1.310933 GGCAATGCTGTCCTCACTGG 61.311 60.000 4.82 0.00 37.10 4.00
1073 1110 1.310933 GCAATGCTGTCCTCACTGGG 61.311 60.000 0.00 0.00 36.20 4.45
1345 1390 2.370281 AATCGTTCGTGCATCTGACT 57.630 45.000 0.00 0.00 0.00 3.41
1346 1391 3.503827 AATCGTTCGTGCATCTGACTA 57.496 42.857 0.00 0.00 0.00 2.59
1347 1392 3.503827 ATCGTTCGTGCATCTGACTAA 57.496 42.857 0.00 0.00 0.00 2.24
1348 1393 3.503827 TCGTTCGTGCATCTGACTAAT 57.496 42.857 0.00 0.00 0.00 1.73
1349 1394 3.845178 TCGTTCGTGCATCTGACTAATT 58.155 40.909 0.00 0.00 0.00 1.40
1350 1395 4.989044 TCGTTCGTGCATCTGACTAATTA 58.011 39.130 0.00 0.00 0.00 1.40
1351 1396 4.796830 TCGTTCGTGCATCTGACTAATTAC 59.203 41.667 0.00 0.00 0.00 1.89
1352 1397 4.798907 CGTTCGTGCATCTGACTAATTACT 59.201 41.667 0.00 0.00 0.00 2.24
1437 1482 8.716646 TTGATTGATTCGTCTATCAGCTTTTA 57.283 30.769 0.00 0.00 36.03 1.52
1513 1559 0.036022 GCTCCAACTGTTCTCCAGCT 59.964 55.000 0.00 0.00 45.68 4.24
1637 1685 3.017442 GGCTTCTTCCCACAGTAATTCC 58.983 50.000 0.00 0.00 0.00 3.01
1655 1705 6.625873 AATTCCCATTAGCGATTTCTCTTC 57.374 37.500 0.00 0.00 0.00 2.87
1656 1706 5.359194 TTCCCATTAGCGATTTCTCTTCT 57.641 39.130 0.00 0.00 0.00 2.85
1657 1707 5.359194 TCCCATTAGCGATTTCTCTTCTT 57.641 39.130 0.00 0.00 0.00 2.52
1670 1720 8.449397 CGATTTCTCTTCTTGATGAAATTGAGT 58.551 33.333 0.00 0.00 40.23 3.41
1947 2017 0.319297 TCGCCGCAGATCATCATCAG 60.319 55.000 0.00 0.00 0.00 2.90
2095 2380 3.378112 CGCTCTGCCATTCTTTATTTCCA 59.622 43.478 0.00 0.00 0.00 3.53
2164 2453 0.609131 GCATGTAGGCCACCAGTTGT 60.609 55.000 5.01 0.00 0.00 3.32
2182 2471 2.047179 GTCGGACCCACTTGGAGC 60.047 66.667 0.00 0.00 37.39 4.70
2183 2472 3.691342 TCGGACCCACTTGGAGCG 61.691 66.667 0.00 0.00 37.39 5.03
2184 2473 4.003788 CGGACCCACTTGGAGCGT 62.004 66.667 0.00 0.00 37.39 5.07
2185 2474 2.047179 GGACCCACTTGGAGCGTC 60.047 66.667 0.00 0.00 37.39 5.19
2250 2543 7.687941 TTTCCTACAAATCCAAAGTCAGATC 57.312 36.000 0.00 0.00 0.00 2.75
2466 2764 7.669427 AGCATTTCCATTTTCTATTGACACAA 58.331 30.769 0.00 0.00 0.00 3.33
2467 2765 8.316214 AGCATTTCCATTTTCTATTGACACAAT 58.684 29.630 0.00 0.00 0.00 2.71
2468 2766 8.385111 GCATTTCCATTTTCTATTGACACAATG 58.615 33.333 7.16 0.00 0.00 2.82
2469 2767 9.426837 CATTTCCATTTTCTATTGACACAATGT 57.573 29.630 7.16 0.00 0.00 2.71
2470 2768 8.815141 TTTCCATTTTCTATTGACACAATGTG 57.185 30.769 12.40 12.40 39.75 3.21
2484 2782 6.478512 ACACAATGTGTCCCTAAAACATTT 57.521 33.333 13.98 0.00 43.92 2.32
2485 2783 6.512297 ACACAATGTGTCCCTAAAACATTTC 58.488 36.000 13.98 0.00 43.92 2.17
2486 2784 6.097554 ACACAATGTGTCCCTAAAACATTTCA 59.902 34.615 13.98 0.00 43.92 2.69
2487 2785 6.420604 CACAATGTGTCCCTAAAACATTTCAC 59.579 38.462 5.00 0.00 41.39 3.18
2488 2786 4.822036 TGTGTCCCTAAAACATTTCACG 57.178 40.909 0.00 0.00 0.00 4.35
2489 2787 4.452825 TGTGTCCCTAAAACATTTCACGA 58.547 39.130 0.00 0.00 0.00 4.35
2490 2788 4.882427 TGTGTCCCTAAAACATTTCACGAA 59.118 37.500 0.00 0.00 0.00 3.85
2491 2789 5.357314 TGTGTCCCTAAAACATTTCACGAAA 59.643 36.000 0.00 0.00 34.46 3.46
2492 2790 6.127703 TGTGTCCCTAAAACATTTCACGAAAA 60.128 34.615 0.00 0.00 33.56 2.29
2493 2791 6.752815 GTGTCCCTAAAACATTTCACGAAAAA 59.247 34.615 0.00 0.00 33.56 1.94
2518 2816 8.785329 AACAAATGTGTTCCTAAAACAAACAT 57.215 26.923 0.00 0.00 45.00 2.71
2520 2818 9.308318 ACAAATGTGTTCCTAAAACAAACATAC 57.692 29.630 0.00 0.00 35.54 2.39
2567 2867 7.336931 ACATAAGTTGTATGAAGATTGTCCCAC 59.663 37.037 0.50 0.00 36.57 4.61
2598 4535 7.600752 GGACATGGTAATCTAAAGATACTGCTC 59.399 40.741 0.00 0.00 33.73 4.26
2601 4538 5.597182 TGGTAATCTAAAGATACTGCTCCGT 59.403 40.000 0.00 0.00 33.73 4.69
2627 4564 4.383602 CCGTTTCAGGCCGTTGCG 62.384 66.667 0.00 0.00 38.85 4.85
2894 4870 2.570169 CACGCCAGTAACATTTTCACG 58.430 47.619 0.00 0.00 0.00 4.35
2928 4904 1.485294 TTCTGAAACCCTGCGCCCTA 61.485 55.000 4.18 0.00 0.00 3.53
2936 4912 0.463116 CCCTGCGCCCTACGTAAATT 60.463 55.000 4.18 0.00 46.11 1.82
3437 5413 0.673956 GGTTCTTCCAGGCCTTCGTC 60.674 60.000 0.00 0.00 35.97 4.20
3727 5722 4.184629 TGTTTGTGGGTGCATTTTTGTAC 58.815 39.130 0.00 0.00 0.00 2.90
3728 5723 4.184629 GTTTGTGGGTGCATTTTTGTACA 58.815 39.130 0.00 0.00 0.00 2.90
3753 5748 7.067008 CAGCCATTGATGCATGATTATATCTCA 59.933 37.037 2.46 0.00 0.00 3.27
3827 5826 3.488778 TTCAGTTTGCCCAAATGCATT 57.511 38.095 5.99 5.99 41.70 3.56
3937 5943 1.403679 CGCAAAGAACCAAGACACCAA 59.596 47.619 0.00 0.00 0.00 3.67
3975 5981 5.417754 ACTTTAAGGGCTTCAGTAGTACC 57.582 43.478 0.00 0.00 0.00 3.34
4011 6017 6.890268 ACAGGTAAGAATTGAGAATAAACCCC 59.110 38.462 0.00 0.00 0.00 4.95
4133 6156 6.835488 AGCTTTTTACCACACATCATATGGAT 59.165 34.615 2.13 0.00 36.94 3.41
4138 6161 9.693739 TTTTACCACACATCATATGGATTAACT 57.306 29.630 2.13 0.00 36.94 2.24
4139 6162 8.902540 TTACCACACATCATATGGATTAACTC 57.097 34.615 2.13 0.00 36.94 3.01
4140 6163 6.299141 ACCACACATCATATGGATTAACTCC 58.701 40.000 2.13 0.00 45.19 3.85
4141 6164 5.707298 CCACACATCATATGGATTAACTCCC 59.293 44.000 2.13 0.00 44.23 4.30
4142 6165 5.409520 CACACATCATATGGATTAACTCCCG 59.590 44.000 2.13 0.00 44.23 5.14
4143 6166 5.071788 ACACATCATATGGATTAACTCCCGT 59.928 40.000 2.13 0.00 44.23 5.28
4144 6167 6.269077 ACACATCATATGGATTAACTCCCGTA 59.731 38.462 2.13 0.00 44.23 4.02
4145 6168 6.813649 CACATCATATGGATTAACTCCCGTAG 59.186 42.308 2.13 0.00 44.23 3.51
4146 6169 5.401531 TCATATGGATTAACTCCCGTAGC 57.598 43.478 2.13 0.00 44.23 3.58
4147 6170 4.836175 TCATATGGATTAACTCCCGTAGCA 59.164 41.667 2.13 0.00 44.23 3.49
4148 6171 5.305902 TCATATGGATTAACTCCCGTAGCAA 59.694 40.000 2.13 0.00 44.23 3.91
4149 6172 4.706842 ATGGATTAACTCCCGTAGCAAT 57.293 40.909 0.00 0.00 44.23 3.56
4150 6173 3.804036 TGGATTAACTCCCGTAGCAATG 58.196 45.455 0.00 0.00 44.23 2.82
4151 6174 3.199071 TGGATTAACTCCCGTAGCAATGT 59.801 43.478 0.00 0.00 44.23 2.71
4152 6175 4.196971 GGATTAACTCCCGTAGCAATGTT 58.803 43.478 0.00 0.00 38.19 2.71
4153 6176 4.638865 GGATTAACTCCCGTAGCAATGTTT 59.361 41.667 0.00 0.00 38.19 2.83
4154 6177 5.448632 GGATTAACTCCCGTAGCAATGTTTG 60.449 44.000 0.00 0.00 38.19 2.93
4155 6178 8.805451 GGATTAACTCCCGTAGCAATGTTTGC 62.805 46.154 4.08 4.08 46.79 3.68
4174 6197 4.216963 GCGCAACAGCTGAACAAG 57.783 55.556 23.35 8.56 0.00 3.16
4175 6198 1.356624 GCGCAACAGCTGAACAAGT 59.643 52.632 23.35 0.00 0.00 3.16
4176 6199 0.931662 GCGCAACAGCTGAACAAGTG 60.932 55.000 23.35 12.03 0.00 3.16
4177 6200 0.378257 CGCAACAGCTGAACAAGTGT 59.622 50.000 23.35 0.00 0.00 3.55
4178 6201 1.597195 CGCAACAGCTGAACAAGTGTA 59.403 47.619 23.35 0.00 0.00 2.90
4179 6202 2.031560 CGCAACAGCTGAACAAGTGTAA 59.968 45.455 23.35 0.00 0.00 2.41
4180 6203 3.486708 CGCAACAGCTGAACAAGTGTAAA 60.487 43.478 23.35 0.00 0.00 2.01
4181 6204 4.420168 GCAACAGCTGAACAAGTGTAAAA 58.580 39.130 23.35 0.00 0.00 1.52
4182 6205 4.265320 GCAACAGCTGAACAAGTGTAAAAC 59.735 41.667 23.35 0.00 0.00 2.43
4183 6206 4.632538 ACAGCTGAACAAGTGTAAAACC 57.367 40.909 23.35 0.00 0.00 3.27
4184 6207 4.270008 ACAGCTGAACAAGTGTAAAACCT 58.730 39.130 23.35 0.00 0.00 3.50
4185 6208 5.433526 ACAGCTGAACAAGTGTAAAACCTA 58.566 37.500 23.35 0.00 0.00 3.08
4186 6209 6.062095 ACAGCTGAACAAGTGTAAAACCTAT 58.938 36.000 23.35 0.00 0.00 2.57
4187 6210 7.221450 ACAGCTGAACAAGTGTAAAACCTATA 58.779 34.615 23.35 0.00 0.00 1.31
4188 6211 7.172703 ACAGCTGAACAAGTGTAAAACCTATAC 59.827 37.037 23.35 0.00 0.00 1.47
4189 6212 6.653740 AGCTGAACAAGTGTAAAACCTATACC 59.346 38.462 0.00 0.00 0.00 2.73
4190 6213 6.128090 GCTGAACAAGTGTAAAACCTATACCC 60.128 42.308 0.00 0.00 0.00 3.69
4191 6214 6.839454 TGAACAAGTGTAAAACCTATACCCA 58.161 36.000 0.00 0.00 0.00 4.51
4192 6215 6.938030 TGAACAAGTGTAAAACCTATACCCAG 59.062 38.462 0.00 0.00 0.00 4.45
4193 6216 5.812286 ACAAGTGTAAAACCTATACCCAGG 58.188 41.667 0.00 0.00 41.87 4.45
4194 6217 5.548836 ACAAGTGTAAAACCTATACCCAGGA 59.451 40.000 0.00 0.00 39.18 3.86
4195 6218 6.044637 ACAAGTGTAAAACCTATACCCAGGAA 59.955 38.462 0.00 0.00 39.18 3.36
4196 6219 6.309389 AGTGTAAAACCTATACCCAGGAAG 57.691 41.667 0.00 0.00 39.18 3.46
4197 6220 6.027482 AGTGTAAAACCTATACCCAGGAAGA 58.973 40.000 0.00 0.00 39.18 2.87
4198 6221 6.677076 AGTGTAAAACCTATACCCAGGAAGAT 59.323 38.462 0.00 0.00 39.18 2.40
4199 6222 6.766467 GTGTAAAACCTATACCCAGGAAGATG 59.234 42.308 0.00 0.00 39.18 2.90
4200 6223 6.674861 TGTAAAACCTATACCCAGGAAGATGA 59.325 38.462 0.00 0.00 39.18 2.92
4201 6224 5.632034 AAACCTATACCCAGGAAGATGAC 57.368 43.478 0.00 0.00 39.18 3.06
4202 6225 4.561254 ACCTATACCCAGGAAGATGACT 57.439 45.455 0.00 0.00 39.18 3.41
4203 6226 4.897051 ACCTATACCCAGGAAGATGACTT 58.103 43.478 0.00 0.00 39.18 3.01
4248 6271 5.069501 GGAGACGTATACTGTGAAAACCT 57.930 43.478 0.56 0.00 0.00 3.50
4249 6272 5.100943 GGAGACGTATACTGTGAAAACCTC 58.899 45.833 0.56 3.32 0.00 3.85
4250 6273 5.105837 GGAGACGTATACTGTGAAAACCTCT 60.106 44.000 0.56 0.00 0.00 3.69
4251 6274 5.710984 AGACGTATACTGTGAAAACCTCTG 58.289 41.667 0.56 0.00 0.00 3.35
4252 6275 5.475909 AGACGTATACTGTGAAAACCTCTGA 59.524 40.000 0.56 0.00 0.00 3.27
4253 6276 5.710984 ACGTATACTGTGAAAACCTCTGAG 58.289 41.667 0.56 0.00 0.00 3.35
4254 6277 5.475909 ACGTATACTGTGAAAACCTCTGAGA 59.524 40.000 6.17 0.00 0.00 3.27
4255 6278 5.800941 CGTATACTGTGAAAACCTCTGAGAC 59.199 44.000 6.17 0.00 0.00 3.36
4256 6279 3.477210 ACTGTGAAAACCTCTGAGACC 57.523 47.619 6.17 0.00 0.00 3.85
4257 6280 3.041946 ACTGTGAAAACCTCTGAGACCT 58.958 45.455 6.17 0.00 0.00 3.85
4258 6281 3.456277 ACTGTGAAAACCTCTGAGACCTT 59.544 43.478 6.17 0.00 0.00 3.50
4259 6282 4.061596 CTGTGAAAACCTCTGAGACCTTC 58.938 47.826 6.17 6.03 0.00 3.46
4260 6283 3.711704 TGTGAAAACCTCTGAGACCTTCT 59.288 43.478 6.17 0.00 0.00 2.85
4261 6284 4.164221 TGTGAAAACCTCTGAGACCTTCTT 59.836 41.667 6.17 0.00 0.00 2.52
4262 6285 5.126779 GTGAAAACCTCTGAGACCTTCTTT 58.873 41.667 6.17 0.00 0.00 2.52
4263 6286 5.008118 GTGAAAACCTCTGAGACCTTCTTTG 59.992 44.000 6.17 0.00 0.00 2.77
4264 6287 3.778954 AACCTCTGAGACCTTCTTTGG 57.221 47.619 6.17 0.00 0.00 3.28
4265 6288 1.981495 ACCTCTGAGACCTTCTTTGGG 59.019 52.381 6.17 0.00 0.00 4.12
4266 6289 1.981495 CCTCTGAGACCTTCTTTGGGT 59.019 52.381 6.17 0.00 40.13 4.51
4267 6290 2.373502 CCTCTGAGACCTTCTTTGGGTT 59.626 50.000 6.17 0.00 37.17 4.11
4268 6291 3.406764 CTCTGAGACCTTCTTTGGGTTG 58.593 50.000 0.00 0.00 37.17 3.77
4269 6292 2.777692 TCTGAGACCTTCTTTGGGTTGT 59.222 45.455 0.00 0.00 37.17 3.32
4270 6293 3.971305 TCTGAGACCTTCTTTGGGTTGTA 59.029 43.478 0.00 0.00 37.17 2.41
4271 6294 4.040461 TCTGAGACCTTCTTTGGGTTGTAG 59.960 45.833 0.00 0.00 37.17 2.74
4272 6295 3.072476 TGAGACCTTCTTTGGGTTGTAGG 59.928 47.826 0.00 0.00 37.17 3.18
4273 6296 2.375509 AGACCTTCTTTGGGTTGTAGGG 59.624 50.000 0.00 0.00 37.17 3.53
4274 6297 2.374170 GACCTTCTTTGGGTTGTAGGGA 59.626 50.000 0.00 0.00 37.17 4.20
4275 6298 2.993863 ACCTTCTTTGGGTTGTAGGGAT 59.006 45.455 0.00 0.00 32.46 3.85
4276 6299 3.401342 ACCTTCTTTGGGTTGTAGGGATT 59.599 43.478 0.00 0.00 32.46 3.01
4277 6300 4.140782 ACCTTCTTTGGGTTGTAGGGATTT 60.141 41.667 0.00 0.00 32.46 2.17
4278 6301 4.838423 CCTTCTTTGGGTTGTAGGGATTTT 59.162 41.667 0.00 0.00 0.00 1.82
4279 6302 5.279456 CCTTCTTTGGGTTGTAGGGATTTTG 60.279 44.000 0.00 0.00 0.00 2.44
4280 6303 5.068215 TCTTTGGGTTGTAGGGATTTTGA 57.932 39.130 0.00 0.00 0.00 2.69
4281 6304 5.076873 TCTTTGGGTTGTAGGGATTTTGAG 58.923 41.667 0.00 0.00 0.00 3.02
4282 6305 3.449746 TGGGTTGTAGGGATTTTGAGG 57.550 47.619 0.00 0.00 0.00 3.86
4283 6306 2.990284 TGGGTTGTAGGGATTTTGAGGA 59.010 45.455 0.00 0.00 0.00 3.71
4284 6307 3.399644 TGGGTTGTAGGGATTTTGAGGAA 59.600 43.478 0.00 0.00 0.00 3.36
4285 6308 4.045334 TGGGTTGTAGGGATTTTGAGGAAT 59.955 41.667 0.00 0.00 0.00 3.01
4286 6309 5.023452 GGGTTGTAGGGATTTTGAGGAATT 58.977 41.667 0.00 0.00 0.00 2.17
4287 6310 5.127194 GGGTTGTAGGGATTTTGAGGAATTC 59.873 44.000 0.00 0.00 0.00 2.17
4288 6311 5.952347 GGTTGTAGGGATTTTGAGGAATTCT 59.048 40.000 5.23 0.00 0.00 2.40
4289 6312 7.116736 GGTTGTAGGGATTTTGAGGAATTCTA 58.883 38.462 5.23 0.00 0.00 2.10
4290 6313 7.780271 GGTTGTAGGGATTTTGAGGAATTCTAT 59.220 37.037 5.23 0.00 0.00 1.98
4291 6314 9.847224 GTTGTAGGGATTTTGAGGAATTCTATA 57.153 33.333 5.23 0.00 0.00 1.31
4293 6316 8.660435 TGTAGGGATTTTGAGGAATTCTATAGG 58.340 37.037 5.23 0.00 0.00 2.57
4294 6317 7.954539 AGGGATTTTGAGGAATTCTATAGGA 57.045 36.000 5.23 0.00 0.00 2.94
4295 6318 8.531362 AGGGATTTTGAGGAATTCTATAGGAT 57.469 34.615 5.23 0.00 0.00 3.24
4296 6319 9.635284 AGGGATTTTGAGGAATTCTATAGGATA 57.365 33.333 5.23 0.00 0.00 2.59
4297 6320 9.898152 GGGATTTTGAGGAATTCTATAGGATAG 57.102 37.037 5.23 0.00 0.00 2.08
4298 6321 9.898152 GGATTTTGAGGAATTCTATAGGATAGG 57.102 37.037 5.23 0.00 0.00 2.57
4329 6352 4.623932 GGAAAAATTCCTTTTGAGCCCT 57.376 40.909 1.86 0.00 46.57 5.19
4330 6353 4.973168 GGAAAAATTCCTTTTGAGCCCTT 58.027 39.130 1.86 0.00 46.57 3.95
4331 6354 5.376625 GGAAAAATTCCTTTTGAGCCCTTT 58.623 37.500 1.86 0.00 46.57 3.11
4332 6355 5.239306 GGAAAAATTCCTTTTGAGCCCTTTG 59.761 40.000 1.86 0.00 46.57 2.77
4333 6356 4.356405 AAATTCCTTTTGAGCCCTTTGG 57.644 40.909 0.00 0.00 0.00 3.28
4334 6357 2.470057 TTCCTTTTGAGCCCTTTGGT 57.530 45.000 0.00 0.00 0.00 3.67
4335 6358 2.470057 TCCTTTTGAGCCCTTTGGTT 57.530 45.000 0.00 0.00 0.00 3.67
4336 6359 2.758130 TCCTTTTGAGCCCTTTGGTTT 58.242 42.857 0.00 0.00 0.00 3.27
4337 6360 2.433970 TCCTTTTGAGCCCTTTGGTTTG 59.566 45.455 0.00 0.00 0.00 2.93
4338 6361 2.170397 CCTTTTGAGCCCTTTGGTTTGT 59.830 45.455 0.00 0.00 0.00 2.83
4339 6362 3.386402 CCTTTTGAGCCCTTTGGTTTGTA 59.614 43.478 0.00 0.00 0.00 2.41
4340 6363 4.368315 CTTTTGAGCCCTTTGGTTTGTAC 58.632 43.478 0.00 0.00 0.00 2.90
4341 6364 3.306472 TTGAGCCCTTTGGTTTGTACT 57.694 42.857 0.00 0.00 0.00 2.73
4342 6365 2.858745 TGAGCCCTTTGGTTTGTACTC 58.141 47.619 0.00 0.00 0.00 2.59
4343 6366 2.160205 GAGCCCTTTGGTTTGTACTCC 58.840 52.381 0.00 0.00 0.00 3.85
4344 6367 1.203013 AGCCCTTTGGTTTGTACTCCC 60.203 52.381 0.00 0.00 0.00 4.30
4345 6368 1.203013 GCCCTTTGGTTTGTACTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
4346 6369 2.791655 CCCTTTGGTTTGTACTCCCTC 58.208 52.381 0.00 0.00 0.00 4.30
4347 6370 2.554564 CCCTTTGGTTTGTACTCCCTCC 60.555 54.545 0.00 0.00 0.00 4.30
4348 6371 2.423577 CTTTGGTTTGTACTCCCTCCG 58.576 52.381 0.00 0.00 0.00 4.63
4349 6372 1.426751 TTGGTTTGTACTCCCTCCGT 58.573 50.000 0.00 0.00 0.00 4.69
4350 6373 1.426751 TGGTTTGTACTCCCTCCGTT 58.573 50.000 0.00 0.00 0.00 4.44
4351 6374 1.770061 TGGTTTGTACTCCCTCCGTTT 59.230 47.619 0.00 0.00 0.00 3.60
4352 6375 2.971330 TGGTTTGTACTCCCTCCGTTTA 59.029 45.455 0.00 0.00 0.00 2.01
4353 6376 3.583966 TGGTTTGTACTCCCTCCGTTTAT 59.416 43.478 0.00 0.00 0.00 1.40
4354 6377 4.776837 TGGTTTGTACTCCCTCCGTTTATA 59.223 41.667 0.00 0.00 0.00 0.98
4355 6378 5.248020 TGGTTTGTACTCCCTCCGTTTATAA 59.752 40.000 0.00 0.00 0.00 0.98
4356 6379 6.172630 GGTTTGTACTCCCTCCGTTTATAAA 58.827 40.000 0.00 0.00 0.00 1.40
4357 6380 6.825213 GGTTTGTACTCCCTCCGTTTATAAAT 59.175 38.462 0.31 0.00 0.00 1.40
4358 6381 7.201670 GGTTTGTACTCCCTCCGTTTATAAATG 60.202 40.741 10.03 10.03 0.00 2.32
4359 6382 6.549433 TGTACTCCCTCCGTTTATAAATGT 57.451 37.500 14.77 0.00 0.00 2.71
4360 6383 7.658525 TGTACTCCCTCCGTTTATAAATGTA 57.341 36.000 14.77 0.19 0.00 2.29
4361 6384 8.076910 TGTACTCCCTCCGTTTATAAATGTAA 57.923 34.615 14.77 3.85 0.00 2.41
4362 6385 8.199449 TGTACTCCCTCCGTTTATAAATGTAAG 58.801 37.037 14.77 11.50 0.00 2.34
4363 6386 7.191593 ACTCCCTCCGTTTATAAATGTAAGT 57.808 36.000 14.77 8.38 0.00 2.24
4364 6387 7.270779 ACTCCCTCCGTTTATAAATGTAAGTC 58.729 38.462 14.77 0.00 0.00 3.01
4365 6388 7.125356 ACTCCCTCCGTTTATAAATGTAAGTCT 59.875 37.037 14.77 0.00 0.00 3.24
4366 6389 7.854337 TCCCTCCGTTTATAAATGTAAGTCTT 58.146 34.615 14.77 0.00 0.00 3.01
4367 6390 8.323567 TCCCTCCGTTTATAAATGTAAGTCTTT 58.676 33.333 14.77 0.00 0.00 2.52
4368 6391 8.953313 CCCTCCGTTTATAAATGTAAGTCTTTT 58.047 33.333 14.77 0.00 0.00 2.27
4382 6405 9.965902 ATGTAAGTCTTTTTAGAGATGATTGGT 57.034 29.630 0.00 0.00 0.00 3.67
4387 6410 9.401058 AGTCTTTTTAGAGATGATTGGTAATGG 57.599 33.333 0.00 0.00 0.00 3.16
4388 6411 9.396022 GTCTTTTTAGAGATGATTGGTAATGGA 57.604 33.333 0.00 0.00 0.00 3.41
4389 6412 9.396022 TCTTTTTAGAGATGATTGGTAATGGAC 57.604 33.333 0.00 0.00 0.00 4.02
4390 6413 7.786178 TTTTAGAGATGATTGGTAATGGACG 57.214 36.000 0.00 0.00 0.00 4.79
4391 6414 4.342862 AGAGATGATTGGTAATGGACGG 57.657 45.455 0.00 0.00 0.00 4.79
4392 6415 3.711704 AGAGATGATTGGTAATGGACGGT 59.288 43.478 0.00 0.00 0.00 4.83
4393 6416 3.808728 AGATGATTGGTAATGGACGGTG 58.191 45.455 0.00 0.00 0.00 4.94
4394 6417 3.454447 AGATGATTGGTAATGGACGGTGA 59.546 43.478 0.00 0.00 0.00 4.02
4395 6418 2.980568 TGATTGGTAATGGACGGTGAC 58.019 47.619 0.00 0.00 0.00 3.67
4396 6419 2.303311 TGATTGGTAATGGACGGTGACA 59.697 45.455 0.00 0.00 0.00 3.58
4397 6420 2.465860 TTGGTAATGGACGGTGACAG 57.534 50.000 0.00 0.00 0.00 3.51
4398 6421 1.634960 TGGTAATGGACGGTGACAGA 58.365 50.000 0.00 0.00 0.00 3.41
4399 6422 2.184533 TGGTAATGGACGGTGACAGAT 58.815 47.619 0.00 0.00 0.00 2.90
4400 6423 2.167693 TGGTAATGGACGGTGACAGATC 59.832 50.000 0.00 0.00 0.00 2.75
4401 6424 2.167693 GGTAATGGACGGTGACAGATCA 59.832 50.000 0.00 0.00 0.00 2.92
4410 6433 2.740121 TGACAGATCACACGTGGGA 58.260 52.632 25.05 25.05 0.00 4.37
4411 6434 1.266178 TGACAGATCACACGTGGGAT 58.734 50.000 32.63 32.63 41.70 3.85
4412 6435 1.623311 TGACAGATCACACGTGGGATT 59.377 47.619 32.58 18.54 38.51 3.01
4413 6436 2.002586 GACAGATCACACGTGGGATTG 58.997 52.381 32.58 29.18 38.51 2.67
4414 6437 0.729116 CAGATCACACGTGGGATTGC 59.271 55.000 32.58 21.21 38.51 3.56
4415 6438 0.615331 AGATCACACGTGGGATTGCT 59.385 50.000 32.58 23.05 38.51 3.91
4416 6439 1.831106 AGATCACACGTGGGATTGCTA 59.169 47.619 32.58 5.85 38.51 3.49
4417 6440 2.236146 AGATCACACGTGGGATTGCTAA 59.764 45.455 32.58 5.02 38.51 3.09
4418 6441 1.803334 TCACACGTGGGATTGCTAAC 58.197 50.000 18.52 0.00 0.00 2.34
4419 6442 0.802494 CACACGTGGGATTGCTAACC 59.198 55.000 21.57 0.00 0.00 2.85
4420 6443 0.398696 ACACGTGGGATTGCTAACCA 59.601 50.000 21.57 0.00 0.00 3.67
4421 6444 1.004277 ACACGTGGGATTGCTAACCAT 59.996 47.619 21.57 0.00 36.54 3.55
4422 6445 1.670811 CACGTGGGATTGCTAACCATC 59.329 52.381 7.95 0.00 36.54 3.51
4423 6446 1.308998 CGTGGGATTGCTAACCATCC 58.691 55.000 0.00 0.00 36.54 3.51
4424 6447 1.408127 CGTGGGATTGCTAACCATCCA 60.408 52.381 0.00 0.00 36.54 3.41
4425 6448 2.024414 GTGGGATTGCTAACCATCCAC 58.976 52.381 0.00 0.00 36.54 4.02
4426 6449 1.922447 TGGGATTGCTAACCATCCACT 59.078 47.619 0.00 0.00 34.97 4.00
4427 6450 2.311542 TGGGATTGCTAACCATCCACTT 59.688 45.455 0.00 0.00 34.97 3.16
4428 6451 3.525609 TGGGATTGCTAACCATCCACTTA 59.474 43.478 0.00 0.00 34.97 2.24
4429 6452 4.017958 TGGGATTGCTAACCATCCACTTAA 60.018 41.667 0.00 0.00 34.97 1.85
4430 6453 4.580580 GGGATTGCTAACCATCCACTTAAG 59.419 45.833 0.00 0.00 34.97 1.85
4431 6454 4.036852 GGATTGCTAACCATCCACTTAAGC 59.963 45.833 1.29 0.00 33.55 3.09
4432 6455 2.999331 TGCTAACCATCCACTTAAGCC 58.001 47.619 1.29 0.00 0.00 4.35
4433 6456 2.576191 TGCTAACCATCCACTTAAGCCT 59.424 45.455 1.29 0.00 0.00 4.58
4434 6457 2.945668 GCTAACCATCCACTTAAGCCTG 59.054 50.000 1.29 0.00 0.00 4.85
4435 6458 3.622455 GCTAACCATCCACTTAAGCCTGT 60.622 47.826 1.29 0.00 0.00 4.00
4436 6459 3.525800 AACCATCCACTTAAGCCTGTT 57.474 42.857 1.29 0.00 0.00 3.16
4437 6460 3.525800 ACCATCCACTTAAGCCTGTTT 57.474 42.857 1.29 0.00 0.00 2.83
4438 6461 3.844640 ACCATCCACTTAAGCCTGTTTT 58.155 40.909 1.29 0.00 0.00 2.43
4439 6462 3.573967 ACCATCCACTTAAGCCTGTTTTG 59.426 43.478 1.29 0.00 0.00 2.44
4440 6463 3.578688 CATCCACTTAAGCCTGTTTTGC 58.421 45.455 1.29 0.00 0.00 3.68
4441 6464 1.960689 TCCACTTAAGCCTGTTTTGCC 59.039 47.619 1.29 0.00 0.00 4.52
4442 6465 1.335872 CCACTTAAGCCTGTTTTGCCG 60.336 52.381 1.29 0.00 0.00 5.69
4443 6466 1.606668 CACTTAAGCCTGTTTTGCCGA 59.393 47.619 1.29 0.00 0.00 5.54
4444 6467 2.228822 CACTTAAGCCTGTTTTGCCGAT 59.771 45.455 1.29 0.00 0.00 4.18
4445 6468 3.438781 CACTTAAGCCTGTTTTGCCGATA 59.561 43.478 1.29 0.00 0.00 2.92
4446 6469 4.076394 ACTTAAGCCTGTTTTGCCGATAA 58.924 39.130 1.29 0.00 0.00 1.75
4447 6470 4.082949 ACTTAAGCCTGTTTTGCCGATAAC 60.083 41.667 1.29 0.00 0.00 1.89
4448 6471 1.173913 AGCCTGTTTTGCCGATAACC 58.826 50.000 0.00 0.00 0.00 2.85
4449 6472 0.172578 GCCTGTTTTGCCGATAACCC 59.827 55.000 0.00 0.00 0.00 4.11
4450 6473 1.834188 CCTGTTTTGCCGATAACCCT 58.166 50.000 0.00 0.00 0.00 4.34
4451 6474 1.743394 CCTGTTTTGCCGATAACCCTC 59.257 52.381 0.00 0.00 0.00 4.30
4452 6475 1.743394 CTGTTTTGCCGATAACCCTCC 59.257 52.381 0.00 0.00 0.00 4.30
4453 6476 1.353022 TGTTTTGCCGATAACCCTCCT 59.647 47.619 0.00 0.00 0.00 3.69
4454 6477 2.014857 GTTTTGCCGATAACCCTCCTC 58.985 52.381 0.00 0.00 0.00 3.71
4455 6478 0.544697 TTTGCCGATAACCCTCCTCC 59.455 55.000 0.00 0.00 0.00 4.30
4456 6479 0.326238 TTGCCGATAACCCTCCTCCT 60.326 55.000 0.00 0.00 0.00 3.69
4457 6480 0.759436 TGCCGATAACCCTCCTCCTC 60.759 60.000 0.00 0.00 0.00 3.71
4458 6481 0.470268 GCCGATAACCCTCCTCCTCT 60.470 60.000 0.00 0.00 0.00 3.69
4459 6482 2.035331 GCCGATAACCCTCCTCCTCTT 61.035 57.143 0.00 0.00 0.00 2.85
4460 6483 2.755549 GCCGATAACCCTCCTCCTCTTA 60.756 54.545 0.00 0.00 0.00 2.10
4461 6484 3.158676 CCGATAACCCTCCTCCTCTTAG 58.841 54.545 0.00 0.00 0.00 2.18
4462 6485 3.158676 CGATAACCCTCCTCCTCTTAGG 58.841 54.545 0.00 0.00 38.06 2.69
4463 6486 3.436761 CGATAACCCTCCTCCTCTTAGGT 60.437 52.174 0.00 0.00 37.91 3.08
4464 6487 2.553911 AACCCTCCTCCTCTTAGGTC 57.446 55.000 0.00 0.00 37.91 3.85
4465 6488 1.701422 ACCCTCCTCCTCTTAGGTCT 58.299 55.000 0.00 0.00 37.91 3.85
4466 6489 2.012236 ACCCTCCTCCTCTTAGGTCTT 58.988 52.381 0.00 0.00 37.91 3.01
4467 6490 2.023791 ACCCTCCTCCTCTTAGGTCTTC 60.024 54.545 0.00 0.00 37.91 2.87
4468 6491 2.246327 CCCTCCTCCTCTTAGGTCTTCT 59.754 54.545 0.00 0.00 37.91 2.85
4469 6492 3.310288 CCCTCCTCCTCTTAGGTCTTCTT 60.310 52.174 0.00 0.00 37.91 2.52
4470 6493 4.358214 CCTCCTCCTCTTAGGTCTTCTTT 58.642 47.826 0.00 0.00 37.91 2.52
4471 6494 4.161377 CCTCCTCCTCTTAGGTCTTCTTTG 59.839 50.000 0.00 0.00 37.91 2.77
4472 6495 4.097418 TCCTCCTCTTAGGTCTTCTTTGG 58.903 47.826 0.00 0.00 37.91 3.28
4473 6496 3.841255 CCTCCTCTTAGGTCTTCTTTGGT 59.159 47.826 0.00 0.00 36.53 3.67
4474 6497 4.287326 CCTCCTCTTAGGTCTTCTTTGGTT 59.713 45.833 0.00 0.00 36.53 3.67
4475 6498 5.483811 CTCCTCTTAGGTCTTCTTTGGTTC 58.516 45.833 0.00 0.00 36.53 3.62
4476 6499 4.905456 TCCTCTTAGGTCTTCTTTGGTTCA 59.095 41.667 0.00 0.00 36.53 3.18
4477 6500 5.548056 TCCTCTTAGGTCTTCTTTGGTTCAT 59.452 40.000 0.00 0.00 36.53 2.57
4478 6501 6.729100 TCCTCTTAGGTCTTCTTTGGTTCATA 59.271 38.462 0.00 0.00 36.53 2.15
4479 6502 7.044798 CCTCTTAGGTCTTCTTTGGTTCATAG 58.955 42.308 0.00 0.00 0.00 2.23
4480 6503 6.947464 TCTTAGGTCTTCTTTGGTTCATAGG 58.053 40.000 0.00 0.00 0.00 2.57
4481 6504 6.729100 TCTTAGGTCTTCTTTGGTTCATAGGA 59.271 38.462 0.00 0.00 0.00 2.94
4482 6505 7.403231 TCTTAGGTCTTCTTTGGTTCATAGGAT 59.597 37.037 0.00 0.00 0.00 3.24
4483 6506 8.618240 TTAGGTCTTCTTTGGTTCATAGGATA 57.382 34.615 0.00 0.00 0.00 2.59
4484 6507 7.130681 AGGTCTTCTTTGGTTCATAGGATAG 57.869 40.000 0.00 0.00 0.00 2.08
4485 6508 6.100424 AGGTCTTCTTTGGTTCATAGGATAGG 59.900 42.308 0.00 0.00 0.00 2.57
4486 6509 6.292150 GTCTTCTTTGGTTCATAGGATAGGG 58.708 44.000 0.00 0.00 0.00 3.53
4487 6510 6.099845 GTCTTCTTTGGTTCATAGGATAGGGA 59.900 42.308 0.00 0.00 0.00 4.20
4488 6511 5.888982 TCTTTGGTTCATAGGATAGGGAC 57.111 43.478 0.00 0.00 0.00 4.46
4489 6512 5.285401 TCTTTGGTTCATAGGATAGGGACA 58.715 41.667 0.00 0.00 0.00 4.02
4490 6513 5.911178 TCTTTGGTTCATAGGATAGGGACAT 59.089 40.000 0.00 0.00 0.00 3.06
4491 6514 5.825593 TTGGTTCATAGGATAGGGACATC 57.174 43.478 0.00 0.00 0.00 3.06
4492 6515 4.826616 TGGTTCATAGGATAGGGACATCA 58.173 43.478 0.00 0.00 0.00 3.07
4493 6516 5.415065 TGGTTCATAGGATAGGGACATCAT 58.585 41.667 0.00 0.00 0.00 2.45
4494 6517 6.570680 TGGTTCATAGGATAGGGACATCATA 58.429 40.000 0.00 0.00 0.00 2.15
4495 6518 7.199048 TGGTTCATAGGATAGGGACATCATAT 58.801 38.462 0.00 0.00 33.38 1.78
4496 6519 7.126268 TGGTTCATAGGATAGGGACATCATATG 59.874 40.741 10.12 10.12 44.93 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.033793 CTCGAGCGAATCCTAGCCA 58.966 57.895 0.00 0.00 0.00 4.75
46 47 3.991924 ATGTCGCTCTCAGGGGCCT 62.992 63.158 0.84 0.00 31.05 5.19
87 92 6.992123 TGACAACTGACATACATGAAAAGAGT 59.008 34.615 0.00 0.00 0.00 3.24
88 93 7.425577 TGACAACTGACATACATGAAAAGAG 57.574 36.000 0.00 0.00 0.00 2.85
146 151 4.089780 CGCTAAAGAAATTTTTGCATGCGA 59.910 37.500 14.09 8.74 40.75 5.10
158 163 5.461078 ACATATTCGCGTACGCTAAAGAAAT 59.539 36.000 34.69 23.58 39.84 2.17
172 177 2.731976 GCTTCCCTAAGACATATTCGCG 59.268 50.000 0.00 0.00 34.37 5.87
195 200 2.484264 GACTCCCATTGAAGTTTCCGTG 59.516 50.000 0.00 0.00 0.00 4.94
197 202 2.084546 GGACTCCCATTGAAGTTTCCG 58.915 52.381 0.00 0.00 0.00 4.30
250 280 5.220416 CGAAATCTCATAAACCGTCCTCAAC 60.220 44.000 0.00 0.00 0.00 3.18
267 297 5.968387 GACACGATAAATGTCCGAAATCT 57.032 39.130 0.00 0.00 40.56 2.40
280 310 4.308265 TCAAATGTTCACGGACACGATAA 58.692 39.130 0.00 0.00 44.60 1.75
323 353 2.448453 ACAAACCGTTCCCAAACTTGA 58.552 42.857 0.00 0.00 32.95 3.02
356 386 1.801395 CGTTCGGTCCAACGCATATCT 60.801 52.381 11.79 0.00 42.45 1.98
413 443 2.371391 AAATATATAGGGGGCGGGGT 57.629 50.000 0.00 0.00 0.00 4.95
416 446 5.526111 CGACATTTAAATATATAGGGGGCGG 59.474 44.000 0.00 0.00 0.00 6.13
418 448 6.420638 ACCGACATTTAAATATATAGGGGGC 58.579 40.000 0.00 0.00 0.00 5.80
519 550 7.172532 TCGTTTGTGATTGACATAGTAAAAGCT 59.827 33.333 0.00 0.00 33.40 3.74
527 558 7.521529 AGATTGTTCGTTTGTGATTGACATAG 58.478 34.615 0.00 0.00 33.40 2.23
613 644 1.472662 CCGCTTCCTCCCCGACATAT 61.473 60.000 0.00 0.00 0.00 1.78
618 649 2.365105 AATCCGCTTCCTCCCCGA 60.365 61.111 0.00 0.00 0.00 5.14
620 651 0.183731 AATCAATCCGCTTCCTCCCC 59.816 55.000 0.00 0.00 0.00 4.81
621 652 1.678101 CAAATCAATCCGCTTCCTCCC 59.322 52.381 0.00 0.00 0.00 4.30
635 666 7.174413 TGGTTGACAGGATAATCTTCAAATCA 58.826 34.615 0.00 0.00 0.00 2.57
726 759 6.363088 TCGCTGAAAAATAAGCTGAAATGTTG 59.637 34.615 0.00 0.00 37.27 3.33
757 790 3.664537 GCCGACGACTTTGAACTGATTTC 60.665 47.826 0.00 0.00 34.41 2.17
792 826 4.202010 GGAATGCGGCTTAATTTCTGCTTA 60.202 41.667 0.00 0.00 35.69 3.09
837 871 2.623416 GGCAATGCTTTATAGTGGTCCC 59.377 50.000 4.82 0.00 0.00 4.46
1345 1390 7.802547 ACCCCAATCCCCTCTAATTAGTAATTA 59.197 37.037 12.19 13.45 32.38 1.40
1346 1391 6.628233 ACCCCAATCCCCTCTAATTAGTAATT 59.372 38.462 12.19 12.61 34.90 1.40
1347 1392 6.045577 CACCCCAATCCCCTCTAATTAGTAAT 59.954 42.308 12.19 0.00 0.00 1.89
1348 1393 5.371472 CACCCCAATCCCCTCTAATTAGTAA 59.629 44.000 12.19 0.00 0.00 2.24
1349 1394 4.911522 CACCCCAATCCCCTCTAATTAGTA 59.088 45.833 12.19 0.00 0.00 1.82
1350 1395 3.722101 CACCCCAATCCCCTCTAATTAGT 59.278 47.826 12.19 0.00 0.00 2.24
1351 1396 3.074538 CCACCCCAATCCCCTCTAATTAG 59.925 52.174 6.11 6.11 0.00 1.73
1352 1397 3.060611 CCACCCCAATCCCCTCTAATTA 58.939 50.000 0.00 0.00 0.00 1.40
1361 1406 3.672503 ACCAGCCACCCCAATCCC 61.673 66.667 0.00 0.00 0.00 3.85
1437 1482 5.380043 TCAAGAAGAAACTGCTGAGGAATT 58.620 37.500 0.00 0.00 0.00 2.17
1513 1559 3.130340 GGCTTTATTCCAAATCCGAGCAA 59.870 43.478 0.00 0.00 0.00 3.91
1629 1677 6.831976 AGAGAAATCGCTAATGGGAATTACT 58.168 36.000 0.00 0.00 38.64 2.24
1630 1678 7.442666 AGAAGAGAAATCGCTAATGGGAATTAC 59.557 37.037 0.00 0.00 38.64 1.89
1637 1685 6.481313 TCATCAAGAAGAGAAATCGCTAATGG 59.519 38.462 0.00 0.00 0.00 3.16
1947 2017 0.955919 AAGCAAACGTAGAGCTGGGC 60.956 55.000 9.64 0.00 38.86 5.36
2033 2317 2.183811 CGACAGAGGCAGAGGCAG 59.816 66.667 0.00 0.00 43.71 4.85
2164 2453 2.879233 GCTCCAAGTGGGTCCGACA 61.879 63.158 6.81 0.00 38.11 4.35
2182 2471 1.410004 TCCAAGTATAGGCAGGGACG 58.590 55.000 0.00 0.00 0.00 4.79
2183 2472 2.551071 GCATCCAAGTATAGGCAGGGAC 60.551 54.545 0.00 0.00 0.00 4.46
2184 2473 1.699634 GCATCCAAGTATAGGCAGGGA 59.300 52.381 0.00 0.00 0.00 4.20
2185 2474 1.421268 TGCATCCAAGTATAGGCAGGG 59.579 52.381 0.00 0.00 0.00 4.45
2424 2719 8.149647 TGGAAATGCTTAAAATCTGACAACAAT 58.850 29.630 0.00 0.00 0.00 2.71
2440 2738 7.669427 TGTGTCAATAGAAAATGGAAATGCTT 58.331 30.769 0.00 0.00 0.00 3.91
2466 2764 5.067273 TCGTGAAATGTTTTAGGGACACAT 58.933 37.500 0.00 0.00 32.31 3.21
2467 2765 4.452825 TCGTGAAATGTTTTAGGGACACA 58.547 39.130 0.00 0.00 0.00 3.72
2468 2766 5.427036 TTCGTGAAATGTTTTAGGGACAC 57.573 39.130 0.00 0.00 0.00 3.67
2469 2767 6.452494 TTTTCGTGAAATGTTTTAGGGACA 57.548 33.333 0.00 0.00 0.00 4.02
2490 2788 9.885934 GTTTGTTTTAGGAACACATTTGTTTTT 57.114 25.926 0.00 0.00 46.43 1.94
2491 2789 9.057089 TGTTTGTTTTAGGAACACATTTGTTTT 57.943 25.926 0.00 0.00 46.43 2.43
2492 2790 8.608844 TGTTTGTTTTAGGAACACATTTGTTT 57.391 26.923 0.00 0.00 46.43 2.83
2494 2792 9.308318 GTATGTTTGTTTTAGGAACACATTTGT 57.692 29.630 0.00 0.00 36.25 2.83
2495 2793 9.307121 TGTATGTTTGTTTTAGGAACACATTTG 57.693 29.630 0.00 0.00 36.25 2.32
2497 2795 9.691362 GATGTATGTTTGTTTTAGGAACACATT 57.309 29.630 0.00 0.00 36.25 2.71
2498 2796 8.855110 TGATGTATGTTTGTTTTAGGAACACAT 58.145 29.630 0.00 0.00 36.25 3.21
2567 2867 5.902681 TCTTTAGATTACCATGTCCTCACG 58.097 41.667 0.00 0.00 0.00 4.35
2598 4535 2.210116 CTGAAACGGGAATATGGACGG 58.790 52.381 0.00 0.00 0.00 4.79
2601 4538 1.133915 GGCCTGAAACGGGAATATGGA 60.134 52.381 0.00 0.00 29.82 3.41
2627 4564 2.685897 TGGGGTTAGCAAACATAATCGC 59.314 45.455 0.00 0.00 37.34 4.58
2628 4565 3.945285 AGTGGGGTTAGCAAACATAATCG 59.055 43.478 0.00 0.00 37.34 3.34
2629 4566 5.650543 CAAGTGGGGTTAGCAAACATAATC 58.349 41.667 0.00 0.00 37.34 1.75
2630 4567 4.081697 GCAAGTGGGGTTAGCAAACATAAT 60.082 41.667 0.00 0.00 37.34 1.28
2672 4630 1.338655 GAGAGGCTATCAGGACCGAAC 59.661 57.143 3.85 0.00 0.00 3.95
2894 4870 1.066858 TCAGAACTGAAGGACGATGCC 60.067 52.381 1.79 0.00 36.53 4.40
2928 4904 3.428862 GCCTGCAGCCAAATAATTTACGT 60.429 43.478 8.66 0.00 34.35 3.57
2936 4912 1.748879 GGACGCCTGCAGCCAAATA 60.749 57.895 8.66 0.00 38.78 1.40
3242 5218 4.668118 GTCGGGCCGACGTTTGGA 62.668 66.667 39.57 9.72 46.56 3.53
3308 5284 4.503643 CCGTTCCTGAGGTTTTGGTAGTAA 60.504 45.833 0.00 0.00 0.00 2.24
3437 5413 1.536922 CCCACCTTCATCATCGACTCG 60.537 57.143 0.00 0.00 0.00 4.18
3692 5671 5.404066 CACCCACAAACAATAATCGAAAACC 59.596 40.000 0.00 0.00 0.00 3.27
3698 5677 3.567576 TGCACCCACAAACAATAATCG 57.432 42.857 0.00 0.00 0.00 3.34
3727 5722 7.067008 TGAGATATAATCATGCATCAATGGCTG 59.933 37.037 0.00 0.00 0.00 4.85
3728 5723 7.116736 TGAGATATAATCATGCATCAATGGCT 58.883 34.615 0.00 0.00 0.00 4.75
3783 5779 6.036577 TCAGAACCATTTCCCTTTATTTGC 57.963 37.500 0.00 0.00 31.28 3.68
3827 5826 7.279536 GCAGATGATCATCTCTTAGTGACAAAA 59.720 37.037 31.15 0.00 45.78 2.44
3937 5943 6.659242 CCCTTAAAGTAGTGTGACCAATCAAT 59.341 38.462 0.00 0.00 36.31 2.57
3950 5956 6.154192 GGTACTACTGAAGCCCTTAAAGTAGT 59.846 42.308 24.45 24.45 45.34 2.73
3975 5981 1.202879 TCTTACCTGTTGCCTGTTGGG 60.203 52.381 0.00 0.00 38.36 4.12
4011 6017 4.556233 TCAGACGAAAGACAACATACCAG 58.444 43.478 0.00 0.00 0.00 4.00
4156 6179 1.097547 ACTTGTTCAGCTGTTGCGCT 61.098 50.000 14.67 0.00 45.42 5.92
4157 6180 0.931662 CACTTGTTCAGCTGTTGCGC 60.932 55.000 14.67 0.00 45.42 6.09
4158 6181 0.378257 ACACTTGTTCAGCTGTTGCG 59.622 50.000 14.67 2.61 45.42 4.85
4159 6182 3.691049 TTACACTTGTTCAGCTGTTGC 57.309 42.857 14.67 5.83 40.05 4.17
4160 6183 4.798387 GGTTTTACACTTGTTCAGCTGTTG 59.202 41.667 14.67 5.29 0.00 3.33
4161 6184 4.705023 AGGTTTTACACTTGTTCAGCTGTT 59.295 37.500 14.67 0.00 0.00 3.16
4162 6185 4.270008 AGGTTTTACACTTGTTCAGCTGT 58.730 39.130 14.67 0.00 0.00 4.40
4163 6186 4.900635 AGGTTTTACACTTGTTCAGCTG 57.099 40.909 7.63 7.63 0.00 4.24
4164 6187 6.653740 GGTATAGGTTTTACACTTGTTCAGCT 59.346 38.462 0.00 0.00 0.00 4.24
4165 6188 6.128090 GGGTATAGGTTTTACACTTGTTCAGC 60.128 42.308 0.00 0.00 0.00 4.26
4166 6189 6.938030 TGGGTATAGGTTTTACACTTGTTCAG 59.062 38.462 0.00 0.00 0.00 3.02
4167 6190 6.839454 TGGGTATAGGTTTTACACTTGTTCA 58.161 36.000 0.00 0.00 0.00 3.18
4168 6191 6.373495 CCTGGGTATAGGTTTTACACTTGTTC 59.627 42.308 0.00 0.00 32.99 3.18
4169 6192 6.044637 TCCTGGGTATAGGTTTTACACTTGTT 59.955 38.462 0.00 0.00 38.99 2.83
4170 6193 5.548836 TCCTGGGTATAGGTTTTACACTTGT 59.451 40.000 0.00 0.00 38.99 3.16
4171 6194 6.057321 TCCTGGGTATAGGTTTTACACTTG 57.943 41.667 0.00 0.00 38.99 3.16
4172 6195 6.502863 TCTTCCTGGGTATAGGTTTTACACTT 59.497 38.462 0.00 0.00 38.99 3.16
4173 6196 6.027482 TCTTCCTGGGTATAGGTTTTACACT 58.973 40.000 0.00 0.00 38.99 3.55
4174 6197 6.303903 TCTTCCTGGGTATAGGTTTTACAC 57.696 41.667 0.00 0.00 38.99 2.90
4175 6198 6.674861 TCATCTTCCTGGGTATAGGTTTTACA 59.325 38.462 0.00 0.00 38.99 2.41
4176 6199 6.990939 GTCATCTTCCTGGGTATAGGTTTTAC 59.009 42.308 0.00 0.00 38.99 2.01
4177 6200 6.906901 AGTCATCTTCCTGGGTATAGGTTTTA 59.093 38.462 0.00 0.00 38.99 1.52
4178 6201 5.731678 AGTCATCTTCCTGGGTATAGGTTTT 59.268 40.000 0.00 0.00 38.99 2.43
4179 6202 5.289510 AGTCATCTTCCTGGGTATAGGTTT 58.710 41.667 0.00 0.00 38.99 3.27
4180 6203 4.897051 AGTCATCTTCCTGGGTATAGGTT 58.103 43.478 0.00 0.00 38.99 3.50
4181 6204 4.561254 AGTCATCTTCCTGGGTATAGGT 57.439 45.455 0.00 0.00 38.99 3.08
4182 6205 4.021894 CGAAGTCATCTTCCTGGGTATAGG 60.022 50.000 0.00 0.00 45.02 2.57
4183 6206 4.827835 TCGAAGTCATCTTCCTGGGTATAG 59.172 45.833 0.00 0.00 45.02 1.31
4184 6207 4.800023 TCGAAGTCATCTTCCTGGGTATA 58.200 43.478 0.00 0.00 45.02 1.47
4185 6208 3.643237 TCGAAGTCATCTTCCTGGGTAT 58.357 45.455 0.00 0.00 45.02 2.73
4186 6209 3.095912 TCGAAGTCATCTTCCTGGGTA 57.904 47.619 0.00 0.00 45.02 3.69
4187 6210 1.938585 TCGAAGTCATCTTCCTGGGT 58.061 50.000 0.00 0.00 45.02 4.51
4188 6211 3.334583 TTTCGAAGTCATCTTCCTGGG 57.665 47.619 0.00 0.00 45.02 4.45
4189 6212 5.874810 TGTATTTTCGAAGTCATCTTCCTGG 59.125 40.000 0.00 0.00 45.02 4.45
4190 6213 6.968131 TGTATTTTCGAAGTCATCTTCCTG 57.032 37.500 0.00 0.00 45.02 3.86
4191 6214 7.106239 ACATGTATTTTCGAAGTCATCTTCCT 58.894 34.615 0.00 0.00 45.02 3.36
4192 6215 7.308782 ACATGTATTTTCGAAGTCATCTTCC 57.691 36.000 0.00 0.00 45.02 3.46
4218 6241 5.048504 TCACAGTATACGTCTCCGTCTTTTT 60.049 40.000 0.00 0.00 46.28 1.94
4219 6242 4.456911 TCACAGTATACGTCTCCGTCTTTT 59.543 41.667 0.00 0.00 46.28 2.27
4220 6243 4.005650 TCACAGTATACGTCTCCGTCTTT 58.994 43.478 0.00 0.00 46.28 2.52
4221 6244 3.603532 TCACAGTATACGTCTCCGTCTT 58.396 45.455 0.00 0.00 46.28 3.01
4222 6245 3.257469 TCACAGTATACGTCTCCGTCT 57.743 47.619 0.00 0.00 46.28 4.18
4223 6246 4.346734 TTTCACAGTATACGTCTCCGTC 57.653 45.455 0.00 0.00 46.28 4.79
4225 6248 3.855950 GGTTTTCACAGTATACGTCTCCG 59.144 47.826 0.00 0.00 40.83 4.63
4226 6249 5.069501 AGGTTTTCACAGTATACGTCTCC 57.930 43.478 0.00 0.00 0.00 3.71
4227 6250 5.800941 CAGAGGTTTTCACAGTATACGTCTC 59.199 44.000 0.00 1.79 33.24 3.36
4228 6251 5.475909 TCAGAGGTTTTCACAGTATACGTCT 59.524 40.000 0.00 0.00 35.16 4.18
4229 6252 5.706916 TCAGAGGTTTTCACAGTATACGTC 58.293 41.667 0.00 0.00 0.00 4.34
4230 6253 5.475909 TCTCAGAGGTTTTCACAGTATACGT 59.524 40.000 0.00 0.00 0.00 3.57
4231 6254 5.800941 GTCTCAGAGGTTTTCACAGTATACG 59.199 44.000 0.00 0.00 0.00 3.06
4232 6255 6.071278 AGGTCTCAGAGGTTTTCACAGTATAC 60.071 42.308 0.00 0.00 0.00 1.47
4233 6256 6.017192 AGGTCTCAGAGGTTTTCACAGTATA 58.983 40.000 0.00 0.00 0.00 1.47
4234 6257 4.841246 AGGTCTCAGAGGTTTTCACAGTAT 59.159 41.667 0.00 0.00 0.00 2.12
4235 6258 4.223953 AGGTCTCAGAGGTTTTCACAGTA 58.776 43.478 0.00 0.00 0.00 2.74
4236 6259 3.041946 AGGTCTCAGAGGTTTTCACAGT 58.958 45.455 0.00 0.00 0.00 3.55
4237 6260 3.760580 AGGTCTCAGAGGTTTTCACAG 57.239 47.619 0.00 0.00 0.00 3.66
4238 6261 3.711704 AGAAGGTCTCAGAGGTTTTCACA 59.288 43.478 0.00 0.00 0.00 3.58
4239 6262 4.344359 AGAAGGTCTCAGAGGTTTTCAC 57.656 45.455 0.00 0.00 0.00 3.18
4240 6263 5.126067 CAAAGAAGGTCTCAGAGGTTTTCA 58.874 41.667 0.00 0.00 0.00 2.69
4241 6264 4.517075 CCAAAGAAGGTCTCAGAGGTTTTC 59.483 45.833 0.00 0.00 0.00 2.29
4242 6265 4.464947 CCAAAGAAGGTCTCAGAGGTTTT 58.535 43.478 0.00 0.00 0.00 2.43
4243 6266 3.181439 CCCAAAGAAGGTCTCAGAGGTTT 60.181 47.826 0.00 0.00 0.00 3.27
4244 6267 2.373502 CCCAAAGAAGGTCTCAGAGGTT 59.626 50.000 0.00 0.00 0.00 3.50
4245 6268 1.981495 CCCAAAGAAGGTCTCAGAGGT 59.019 52.381 0.00 0.00 0.00 3.85
4246 6269 1.981495 ACCCAAAGAAGGTCTCAGAGG 59.019 52.381 0.00 0.00 28.99 3.69
4247 6270 3.181450 ACAACCCAAAGAAGGTCTCAGAG 60.181 47.826 0.00 0.00 36.27 3.35
4248 6271 2.777692 ACAACCCAAAGAAGGTCTCAGA 59.222 45.455 0.00 0.00 36.27 3.27
4249 6272 3.214696 ACAACCCAAAGAAGGTCTCAG 57.785 47.619 0.00 0.00 36.27 3.35
4250 6273 3.072476 CCTACAACCCAAAGAAGGTCTCA 59.928 47.826 0.00 0.00 36.27 3.27
4251 6274 3.559384 CCCTACAACCCAAAGAAGGTCTC 60.559 52.174 0.00 0.00 36.27 3.36
4252 6275 2.375509 CCCTACAACCCAAAGAAGGTCT 59.624 50.000 0.00 0.00 36.27 3.85
4253 6276 2.374170 TCCCTACAACCCAAAGAAGGTC 59.626 50.000 0.00 0.00 36.27 3.85
4254 6277 2.424793 TCCCTACAACCCAAAGAAGGT 58.575 47.619 0.00 0.00 40.14 3.50
4255 6278 3.739401 ATCCCTACAACCCAAAGAAGG 57.261 47.619 0.00 0.00 0.00 3.46
4256 6279 5.538433 TCAAAATCCCTACAACCCAAAGAAG 59.462 40.000 0.00 0.00 0.00 2.85
4257 6280 5.459505 TCAAAATCCCTACAACCCAAAGAA 58.540 37.500 0.00 0.00 0.00 2.52
4258 6281 5.068215 TCAAAATCCCTACAACCCAAAGA 57.932 39.130 0.00 0.00 0.00 2.52
4259 6282 4.220602 CCTCAAAATCCCTACAACCCAAAG 59.779 45.833 0.00 0.00 0.00 2.77
4260 6283 4.140900 TCCTCAAAATCCCTACAACCCAAA 60.141 41.667 0.00 0.00 0.00 3.28
4261 6284 3.399644 TCCTCAAAATCCCTACAACCCAA 59.600 43.478 0.00 0.00 0.00 4.12
4262 6285 2.990284 TCCTCAAAATCCCTACAACCCA 59.010 45.455 0.00 0.00 0.00 4.51
4263 6286 3.732048 TCCTCAAAATCCCTACAACCC 57.268 47.619 0.00 0.00 0.00 4.11
4264 6287 5.952347 AGAATTCCTCAAAATCCCTACAACC 59.048 40.000 0.65 0.00 0.00 3.77
4265 6288 8.753497 ATAGAATTCCTCAAAATCCCTACAAC 57.247 34.615 0.65 0.00 0.00 3.32
4267 6290 8.660435 CCTATAGAATTCCTCAAAATCCCTACA 58.340 37.037 0.00 0.00 0.00 2.74
4268 6291 8.881262 TCCTATAGAATTCCTCAAAATCCCTAC 58.119 37.037 0.00 0.00 0.00 3.18
4269 6292 9.635284 ATCCTATAGAATTCCTCAAAATCCCTA 57.365 33.333 0.00 0.00 0.00 3.53
4270 6293 7.954539 TCCTATAGAATTCCTCAAAATCCCT 57.045 36.000 0.00 0.00 0.00 4.20
4271 6294 9.898152 CTATCCTATAGAATTCCTCAAAATCCC 57.102 37.037 0.00 0.00 0.00 3.85
4272 6295 9.898152 CCTATCCTATAGAATTCCTCAAAATCC 57.102 37.037 0.00 0.00 0.00 3.01
4292 6315 9.330063 GGAATTTTTCCATTGAAAATCCTATCC 57.670 33.333 13.60 9.81 46.76 2.59
4308 6331 9.962289 ACCAAAGGGCTCAAAAGGAATTTTTCC 62.962 40.741 0.00 0.00 44.02 3.13
4309 6332 5.239306 CCAAAGGGCTCAAAAGGAATTTTTC 59.761 40.000 0.00 0.00 36.87 2.29
4310 6333 5.132502 CCAAAGGGCTCAAAAGGAATTTTT 58.867 37.500 0.00 0.00 39.55 1.94
4311 6334 4.165950 ACCAAAGGGCTCAAAAGGAATTTT 59.834 37.500 0.00 0.00 37.90 1.82
4312 6335 3.716353 ACCAAAGGGCTCAAAAGGAATTT 59.284 39.130 0.00 0.00 37.90 1.82
4313 6336 3.317406 ACCAAAGGGCTCAAAAGGAATT 58.683 40.909 0.00 0.00 37.90 2.17
4314 6337 2.976440 ACCAAAGGGCTCAAAAGGAAT 58.024 42.857 0.00 0.00 37.90 3.01
4315 6338 2.470057 ACCAAAGGGCTCAAAAGGAA 57.530 45.000 0.00 0.00 37.90 3.36
4316 6339 2.433970 CAAACCAAAGGGCTCAAAAGGA 59.566 45.455 0.00 0.00 37.90 3.36
4317 6340 2.170397 ACAAACCAAAGGGCTCAAAAGG 59.830 45.455 0.00 0.00 37.90 3.11
4318 6341 3.541996 ACAAACCAAAGGGCTCAAAAG 57.458 42.857 0.00 0.00 37.90 2.27
4319 6342 4.027437 AGTACAAACCAAAGGGCTCAAAA 58.973 39.130 0.00 0.00 37.90 2.44
4320 6343 3.634910 GAGTACAAACCAAAGGGCTCAAA 59.365 43.478 0.00 0.00 37.90 2.69
4321 6344 3.219281 GAGTACAAACCAAAGGGCTCAA 58.781 45.455 0.00 0.00 37.90 3.02
4322 6345 2.488347 GGAGTACAAACCAAAGGGCTCA 60.488 50.000 0.00 0.00 37.90 4.26
4323 6346 2.160205 GGAGTACAAACCAAAGGGCTC 58.840 52.381 0.00 0.00 37.90 4.70
4324 6347 1.203013 GGGAGTACAAACCAAAGGGCT 60.203 52.381 0.00 0.00 37.90 5.19
4325 6348 1.203013 AGGGAGTACAAACCAAAGGGC 60.203 52.381 0.00 0.00 37.90 5.19
4326 6349 2.554564 GGAGGGAGTACAAACCAAAGGG 60.555 54.545 0.00 0.00 41.29 3.95
4327 6350 2.791655 GGAGGGAGTACAAACCAAAGG 58.208 52.381 0.00 0.00 0.00 3.11
4328 6351 2.224450 ACGGAGGGAGTACAAACCAAAG 60.224 50.000 0.00 0.00 0.00 2.77
4329 6352 1.770061 ACGGAGGGAGTACAAACCAAA 59.230 47.619 0.00 0.00 0.00 3.28
4330 6353 1.426751 ACGGAGGGAGTACAAACCAA 58.573 50.000 0.00 0.00 0.00 3.67
4331 6354 1.426751 AACGGAGGGAGTACAAACCA 58.573 50.000 0.00 0.00 0.00 3.67
4332 6355 2.556144 AAACGGAGGGAGTACAAACC 57.444 50.000 0.00 0.00 0.00 3.27
4333 6356 7.335171 ACATTTATAAACGGAGGGAGTACAAAC 59.665 37.037 0.00 0.00 0.00 2.93
4334 6357 7.396418 ACATTTATAAACGGAGGGAGTACAAA 58.604 34.615 0.00 0.00 0.00 2.83
4335 6358 6.949715 ACATTTATAAACGGAGGGAGTACAA 58.050 36.000 0.00 0.00 0.00 2.41
4336 6359 6.549433 ACATTTATAAACGGAGGGAGTACA 57.451 37.500 0.00 0.00 0.00 2.90
4337 6360 8.200120 ACTTACATTTATAAACGGAGGGAGTAC 58.800 37.037 0.00 0.00 0.00 2.73
4338 6361 8.310122 ACTTACATTTATAAACGGAGGGAGTA 57.690 34.615 0.00 0.00 0.00 2.59
4339 6362 7.125356 AGACTTACATTTATAAACGGAGGGAGT 59.875 37.037 0.00 0.00 0.00 3.85
4340 6363 7.498443 AGACTTACATTTATAAACGGAGGGAG 58.502 38.462 0.00 0.00 0.00 4.30
4341 6364 7.427989 AGACTTACATTTATAAACGGAGGGA 57.572 36.000 0.00 0.00 0.00 4.20
4342 6365 8.502105 AAAGACTTACATTTATAAACGGAGGG 57.498 34.615 0.00 0.00 0.00 4.30
4356 6379 9.965902 ACCAATCATCTCTAAAAAGACTTACAT 57.034 29.630 0.00 0.00 0.00 2.29
4361 6384 9.401058 CCATTACCAATCATCTCTAAAAAGACT 57.599 33.333 0.00 0.00 0.00 3.24
4362 6385 9.396022 TCCATTACCAATCATCTCTAAAAAGAC 57.604 33.333 0.00 0.00 0.00 3.01
4363 6386 9.396022 GTCCATTACCAATCATCTCTAAAAAGA 57.604 33.333 0.00 0.00 0.00 2.52
4364 6387 8.338259 CGTCCATTACCAATCATCTCTAAAAAG 58.662 37.037 0.00 0.00 0.00 2.27
4365 6388 7.282224 CCGTCCATTACCAATCATCTCTAAAAA 59.718 37.037 0.00 0.00 0.00 1.94
4366 6389 6.765989 CCGTCCATTACCAATCATCTCTAAAA 59.234 38.462 0.00 0.00 0.00 1.52
4367 6390 6.126883 ACCGTCCATTACCAATCATCTCTAAA 60.127 38.462 0.00 0.00 0.00 1.85
4368 6391 5.365605 ACCGTCCATTACCAATCATCTCTAA 59.634 40.000 0.00 0.00 0.00 2.10
4369 6392 4.899457 ACCGTCCATTACCAATCATCTCTA 59.101 41.667 0.00 0.00 0.00 2.43
4370 6393 3.711704 ACCGTCCATTACCAATCATCTCT 59.288 43.478 0.00 0.00 0.00 3.10
4371 6394 3.809832 CACCGTCCATTACCAATCATCTC 59.190 47.826 0.00 0.00 0.00 2.75
4372 6395 3.454447 TCACCGTCCATTACCAATCATCT 59.546 43.478 0.00 0.00 0.00 2.90
4373 6396 3.560068 GTCACCGTCCATTACCAATCATC 59.440 47.826 0.00 0.00 0.00 2.92
4374 6397 3.054728 TGTCACCGTCCATTACCAATCAT 60.055 43.478 0.00 0.00 0.00 2.45
4375 6398 2.303311 TGTCACCGTCCATTACCAATCA 59.697 45.455 0.00 0.00 0.00 2.57
4376 6399 2.936498 CTGTCACCGTCCATTACCAATC 59.064 50.000 0.00 0.00 0.00 2.67
4377 6400 2.569853 TCTGTCACCGTCCATTACCAAT 59.430 45.455 0.00 0.00 0.00 3.16
4378 6401 1.972075 TCTGTCACCGTCCATTACCAA 59.028 47.619 0.00 0.00 0.00 3.67
4379 6402 1.634960 TCTGTCACCGTCCATTACCA 58.365 50.000 0.00 0.00 0.00 3.25
4380 6403 2.167693 TGATCTGTCACCGTCCATTACC 59.832 50.000 0.00 0.00 0.00 2.85
4381 6404 3.520290 TGATCTGTCACCGTCCATTAC 57.480 47.619 0.00 0.00 0.00 1.89
4392 6415 1.266178 ATCCCACGTGTGATCTGTCA 58.734 50.000 15.65 0.00 0.00 3.58
4393 6416 2.002586 CAATCCCACGTGTGATCTGTC 58.997 52.381 14.05 0.00 0.00 3.51
4394 6417 1.945819 GCAATCCCACGTGTGATCTGT 60.946 52.381 14.05 0.00 0.00 3.41
4395 6418 0.729116 GCAATCCCACGTGTGATCTG 59.271 55.000 14.05 14.14 0.00 2.90
4396 6419 0.615331 AGCAATCCCACGTGTGATCT 59.385 50.000 14.05 5.28 0.00 2.75
4397 6420 2.309528 TAGCAATCCCACGTGTGATC 57.690 50.000 14.05 2.96 0.00 2.92
4398 6421 2.356135 GTTAGCAATCCCACGTGTGAT 58.644 47.619 15.65 11.66 0.00 3.06
4399 6422 1.609580 GGTTAGCAATCCCACGTGTGA 60.610 52.381 15.65 9.38 0.00 3.58
4400 6423 0.802494 GGTTAGCAATCCCACGTGTG 59.198 55.000 15.65 2.45 0.00 3.82
4401 6424 0.398696 TGGTTAGCAATCCCACGTGT 59.601 50.000 15.65 0.00 0.00 4.49
4402 6425 1.670811 GATGGTTAGCAATCCCACGTG 59.329 52.381 9.08 9.08 0.00 4.49
4403 6426 1.408266 GGATGGTTAGCAATCCCACGT 60.408 52.381 1.43 0.00 38.95 4.49
4404 6427 1.308998 GGATGGTTAGCAATCCCACG 58.691 55.000 1.43 0.00 38.95 4.94
4405 6428 2.024414 GTGGATGGTTAGCAATCCCAC 58.976 52.381 10.30 14.46 43.27 4.61
4406 6429 1.922447 AGTGGATGGTTAGCAATCCCA 59.078 47.619 10.30 5.36 43.27 4.37
4407 6430 2.736670 AGTGGATGGTTAGCAATCCC 57.263 50.000 10.30 2.57 43.27 3.85
4408 6431 4.036852 GCTTAAGTGGATGGTTAGCAATCC 59.963 45.833 6.04 6.04 44.02 3.01
4409 6432 4.036852 GGCTTAAGTGGATGGTTAGCAATC 59.963 45.833 4.02 0.00 0.00 2.67
4410 6433 3.954258 GGCTTAAGTGGATGGTTAGCAAT 59.046 43.478 4.02 0.00 0.00 3.56
4411 6434 3.010138 AGGCTTAAGTGGATGGTTAGCAA 59.990 43.478 4.02 0.00 0.00 3.91
4412 6435 2.576191 AGGCTTAAGTGGATGGTTAGCA 59.424 45.455 4.02 0.00 0.00 3.49
4413 6436 2.945668 CAGGCTTAAGTGGATGGTTAGC 59.054 50.000 4.02 0.00 0.00 3.09
4414 6437 4.222124 ACAGGCTTAAGTGGATGGTTAG 57.778 45.455 4.02 0.00 0.00 2.34
4415 6438 4.650972 AACAGGCTTAAGTGGATGGTTA 57.349 40.909 4.02 0.00 0.00 2.85
4416 6439 3.525800 AACAGGCTTAAGTGGATGGTT 57.474 42.857 4.02 0.00 0.00 3.67
4417 6440 3.525800 AAACAGGCTTAAGTGGATGGT 57.474 42.857 4.02 0.00 0.00 3.55
4418 6441 3.614870 GCAAAACAGGCTTAAGTGGATGG 60.615 47.826 4.02 0.00 0.00 3.51
4419 6442 3.578688 GCAAAACAGGCTTAAGTGGATG 58.421 45.455 4.02 1.12 0.00 3.51
4420 6443 2.562738 GGCAAAACAGGCTTAAGTGGAT 59.437 45.455 4.02 0.00 0.00 3.41
4421 6444 1.960689 GGCAAAACAGGCTTAAGTGGA 59.039 47.619 4.02 0.00 0.00 4.02
4422 6445 1.335872 CGGCAAAACAGGCTTAAGTGG 60.336 52.381 4.02 0.00 0.00 4.00
4423 6446 1.606668 TCGGCAAAACAGGCTTAAGTG 59.393 47.619 4.02 0.00 0.00 3.16
4424 6447 1.975660 TCGGCAAAACAGGCTTAAGT 58.024 45.000 4.02 0.00 0.00 2.24
4425 6448 4.412207 GTTATCGGCAAAACAGGCTTAAG 58.588 43.478 0.00 0.00 0.00 1.85
4426 6449 3.191791 GGTTATCGGCAAAACAGGCTTAA 59.808 43.478 0.00 0.00 0.00 1.85
4427 6450 2.750712 GGTTATCGGCAAAACAGGCTTA 59.249 45.455 0.00 0.00 0.00 3.09
4428 6451 1.544246 GGTTATCGGCAAAACAGGCTT 59.456 47.619 0.00 0.00 0.00 4.35
4429 6452 1.173913 GGTTATCGGCAAAACAGGCT 58.826 50.000 0.00 0.00 0.00 4.58
4430 6453 0.172578 GGGTTATCGGCAAAACAGGC 59.827 55.000 0.00 0.00 0.00 4.85
4431 6454 1.743394 GAGGGTTATCGGCAAAACAGG 59.257 52.381 0.00 0.00 0.00 4.00
4432 6455 1.743394 GGAGGGTTATCGGCAAAACAG 59.257 52.381 0.00 0.00 0.00 3.16
4433 6456 1.353022 AGGAGGGTTATCGGCAAAACA 59.647 47.619 0.00 0.00 0.00 2.83
4434 6457 2.014857 GAGGAGGGTTATCGGCAAAAC 58.985 52.381 0.00 0.00 0.00 2.43
4435 6458 1.064979 GGAGGAGGGTTATCGGCAAAA 60.065 52.381 0.00 0.00 0.00 2.44
4436 6459 0.544697 GGAGGAGGGTTATCGGCAAA 59.455 55.000 0.00 0.00 0.00 3.68
4437 6460 0.326238 AGGAGGAGGGTTATCGGCAA 60.326 55.000 0.00 0.00 0.00 4.52
4438 6461 0.759436 GAGGAGGAGGGTTATCGGCA 60.759 60.000 0.00 0.00 0.00 5.69
4439 6462 0.470268 AGAGGAGGAGGGTTATCGGC 60.470 60.000 0.00 0.00 0.00 5.54
4440 6463 2.089600 AAGAGGAGGAGGGTTATCGG 57.910 55.000 0.00 0.00 0.00 4.18
4441 6464 3.158676 CCTAAGAGGAGGAGGGTTATCG 58.841 54.545 0.00 0.00 37.67 2.92
4442 6465 4.140876 AGACCTAAGAGGAGGAGGGTTATC 60.141 50.000 0.00 0.00 37.67 1.75
4443 6466 3.800736 AGACCTAAGAGGAGGAGGGTTAT 59.199 47.826 0.00 0.00 37.67 1.89
4444 6467 3.208173 AGACCTAAGAGGAGGAGGGTTA 58.792 50.000 0.00 0.00 37.67 2.85
4445 6468 2.012236 AGACCTAAGAGGAGGAGGGTT 58.988 52.381 0.00 0.00 37.67 4.11
4446 6469 1.701422 AGACCTAAGAGGAGGAGGGT 58.299 55.000 0.00 0.00 37.67 4.34
4447 6470 2.246327 AGAAGACCTAAGAGGAGGAGGG 59.754 54.545 0.00 0.00 37.67 4.30
4448 6471 3.680777 AGAAGACCTAAGAGGAGGAGG 57.319 52.381 0.00 0.00 37.67 4.30
4449 6472 4.161377 CCAAAGAAGACCTAAGAGGAGGAG 59.839 50.000 0.00 0.00 37.67 3.69
4450 6473 4.097418 CCAAAGAAGACCTAAGAGGAGGA 58.903 47.826 0.00 0.00 37.67 3.71
4451 6474 3.841255 ACCAAAGAAGACCTAAGAGGAGG 59.159 47.826 0.00 0.00 37.67 4.30
4452 6475 5.012148 TGAACCAAAGAAGACCTAAGAGGAG 59.988 44.000 0.00 0.00 37.67 3.69
4453 6476 4.905456 TGAACCAAAGAAGACCTAAGAGGA 59.095 41.667 0.00 0.00 37.67 3.71
4454 6477 5.228945 TGAACCAAAGAAGACCTAAGAGG 57.771 43.478 0.00 0.00 42.49 3.69
4455 6478 7.044798 CCTATGAACCAAAGAAGACCTAAGAG 58.955 42.308 0.00 0.00 0.00 2.85
4456 6479 6.729100 TCCTATGAACCAAAGAAGACCTAAGA 59.271 38.462 0.00 0.00 0.00 2.10
4457 6480 6.947464 TCCTATGAACCAAAGAAGACCTAAG 58.053 40.000 0.00 0.00 0.00 2.18
4458 6481 6.945636 TCCTATGAACCAAAGAAGACCTAA 57.054 37.500 0.00 0.00 0.00 2.69
4459 6482 7.290248 CCTATCCTATGAACCAAAGAAGACCTA 59.710 40.741 0.00 0.00 0.00 3.08
4460 6483 6.100424 CCTATCCTATGAACCAAAGAAGACCT 59.900 42.308 0.00 0.00 0.00 3.85
4461 6484 6.292150 CCTATCCTATGAACCAAAGAAGACC 58.708 44.000 0.00 0.00 0.00 3.85
4462 6485 6.099845 TCCCTATCCTATGAACCAAAGAAGAC 59.900 42.308 0.00 0.00 0.00 3.01
4463 6486 6.099845 GTCCCTATCCTATGAACCAAAGAAGA 59.900 42.308 0.00 0.00 0.00 2.87
4464 6487 6.126768 TGTCCCTATCCTATGAACCAAAGAAG 60.127 42.308 0.00 0.00 0.00 2.85
4465 6488 5.729229 TGTCCCTATCCTATGAACCAAAGAA 59.271 40.000 0.00 0.00 0.00 2.52
4466 6489 5.285401 TGTCCCTATCCTATGAACCAAAGA 58.715 41.667 0.00 0.00 0.00 2.52
4467 6490 5.630415 TGTCCCTATCCTATGAACCAAAG 57.370 43.478 0.00 0.00 0.00 2.77
4468 6491 5.669904 TGATGTCCCTATCCTATGAACCAAA 59.330 40.000 0.00 0.00 0.00 3.28
4469 6492 5.223655 TGATGTCCCTATCCTATGAACCAA 58.776 41.667 0.00 0.00 0.00 3.67
4470 6493 4.826616 TGATGTCCCTATCCTATGAACCA 58.173 43.478 0.00 0.00 0.00 3.67
4471 6494 7.345653 TCATATGATGTCCCTATCCTATGAACC 59.654 40.741 0.00 0.00 39.52 3.62
4472 6495 8.311395 TCATATGATGTCCCTATCCTATGAAC 57.689 38.462 0.00 0.00 39.52 3.18
4473 6496 8.915813 TTCATATGATGTCCCTATCCTATGAA 57.084 34.615 6.17 15.88 43.90 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.