Multiple sequence alignment - TraesCS7D01G260800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G260800 chr7D 100.000 3102 0 0 1 3102 236648469 236645368 0.000000e+00 5729.0
1 TraesCS7D01G260800 chr7D 92.396 1302 66 17 863 2141 429708018 429709309 0.000000e+00 1825.0
2 TraesCS7D01G260800 chr7D 87.802 746 57 16 1 724 33243695 33242962 0.000000e+00 843.0
3 TraesCS7D01G260800 chr7D 96.380 442 11 4 2045 2485 429709351 429709788 0.000000e+00 723.0
4 TraesCS7D01G260800 chr7D 94.898 98 3 2 2045 2141 429709282 429709378 5.360000e-33 152.0
5 TraesCS7D01G260800 chr7B 94.292 2225 84 16 337 2523 213257266 213255047 0.000000e+00 3365.0
6 TraesCS7D01G260800 chr7A 93.920 1102 45 6 1245 2328 251750101 251749004 0.000000e+00 1644.0
7 TraesCS7D01G260800 chr7A 94.118 425 9 6 778 1186 251750893 251750469 1.570000e-177 632.0
8 TraesCS7D01G260800 chr7A 85.977 435 47 4 2681 3102 251748676 251748243 1.310000e-123 453.0
9 TraesCS7D01G260800 chr7A 92.230 296 15 7 2375 2668 251749010 251748721 2.230000e-111 412.0
10 TraesCS7D01G260800 chr6D 89.730 740 52 8 1 723 436423379 436422647 0.000000e+00 924.0
11 TraesCS7D01G260800 chr6B 89.300 729 65 12 1 723 125077473 125076752 0.000000e+00 902.0
12 TraesCS7D01G260800 chr6B 89.019 683 49 13 1 663 120129161 120129837 0.000000e+00 822.0
13 TraesCS7D01G260800 chr6B 93.878 98 5 1 1 97 691615228 691615131 2.490000e-31 147.0
14 TraesCS7D01G260800 chr1A 88.800 750 65 14 1 734 77916641 77915895 0.000000e+00 902.0
15 TraesCS7D01G260800 chr4D 89.024 738 60 13 1 723 165023659 165024390 0.000000e+00 894.0
16 TraesCS7D01G260800 chr4D 81.232 698 79 33 1655 2326 499292517 499291846 1.650000e-142 516.0
17 TraesCS7D01G260800 chr4D 100.000 30 0 0 2509 2538 465364075 465364046 4.320000e-04 56.5
18 TraesCS7D01G260800 chrUn 88.243 740 66 9 3 723 310310115 310310852 0.000000e+00 865.0
19 TraesCS7D01G260800 chrUn 88.243 740 66 9 3 723 315280264 315279527 0.000000e+00 865.0
20 TraesCS7D01G260800 chrUn 97.436 39 1 0 1797 1835 359420049 359420087 2.000000e-07 67.6
21 TraesCS7D01G260800 chr1D 87.867 750 70 11 1 732 209092950 209092204 0.000000e+00 861.0
22 TraesCS7D01G260800 chr3B 88.108 740 67 9 3 723 754853894 754854631 0.000000e+00 859.0
23 TraesCS7D01G260800 chr5B 87.887 743 66 16 1 723 673043400 673044138 0.000000e+00 852.0
24 TraesCS7D01G260800 chr5B 85.641 195 8 6 1 175 104267807 104268001 1.470000e-43 187.0
25 TraesCS7D01G260800 chr5B 85.987 157 5 6 4 144 117266397 117266242 5.360000e-33 152.0
26 TraesCS7D01G260800 chr5B 90.196 51 5 0 1797 1847 474319609 474319559 2.000000e-07 67.6
27 TraesCS7D01G260800 chr3A 86.141 736 62 18 1 720 60663297 60664008 0.000000e+00 758.0
28 TraesCS7D01G260800 chr4B 79.847 784 99 35 1566 2326 642088456 642087709 4.590000e-143 518.0
29 TraesCS7D01G260800 chr4B 85.654 237 12 10 960 1182 642088939 642088711 2.410000e-56 230.0
30 TraesCS7D01G260800 chr5A 79.028 720 87 32 1646 2326 680077396 680076702 4.750000e-118 435.0
31 TraesCS7D01G260800 chr5A 77.273 572 74 22 960 1498 680078548 680078000 5.060000e-73 285.0
32 TraesCS7D01G260800 chr5A 92.157 51 4 0 1797 1847 496572423 496572373 4.290000e-09 73.1
33 TraesCS7D01G260800 chr5A 83.784 74 11 1 1797 1870 496287826 496287754 5.550000e-08 69.4
34 TraesCS7D01G260800 chr1B 86.935 398 28 8 1 378 614368010 614368403 2.860000e-115 425.0
35 TraesCS7D01G260800 chr2A 95.122 41 2 0 2503 2543 78902444 78902484 7.180000e-07 65.8
36 TraesCS7D01G260800 chr2A 100.000 30 0 0 2509 2538 12609342 12609313 4.320000e-04 56.5
37 TraesCS7D01G260800 chr6A 96.970 33 1 0 2510 2542 579797792 579797760 4.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G260800 chr7D 236645368 236648469 3101 True 5729.00 5729 100.00000 1 3102 1 chr7D.!!$R2 3101
1 TraesCS7D01G260800 chr7D 429708018 429709788 1770 False 900.00 1825 94.55800 863 2485 3 chr7D.!!$F1 1622
2 TraesCS7D01G260800 chr7D 33242962 33243695 733 True 843.00 843 87.80200 1 724 1 chr7D.!!$R1 723
3 TraesCS7D01G260800 chr7B 213255047 213257266 2219 True 3365.00 3365 94.29200 337 2523 1 chr7B.!!$R1 2186
4 TraesCS7D01G260800 chr7A 251748243 251750893 2650 True 785.25 1644 91.56125 778 3102 4 chr7A.!!$R1 2324
5 TraesCS7D01G260800 chr6D 436422647 436423379 732 True 924.00 924 89.73000 1 723 1 chr6D.!!$R1 722
6 TraesCS7D01G260800 chr6B 125076752 125077473 721 True 902.00 902 89.30000 1 723 1 chr6B.!!$R1 722
7 TraesCS7D01G260800 chr6B 120129161 120129837 676 False 822.00 822 89.01900 1 663 1 chr6B.!!$F1 662
8 TraesCS7D01G260800 chr1A 77915895 77916641 746 True 902.00 902 88.80000 1 734 1 chr1A.!!$R1 733
9 TraesCS7D01G260800 chr4D 165023659 165024390 731 False 894.00 894 89.02400 1 723 1 chr4D.!!$F1 722
10 TraesCS7D01G260800 chr4D 499291846 499292517 671 True 516.00 516 81.23200 1655 2326 1 chr4D.!!$R2 671
11 TraesCS7D01G260800 chrUn 310310115 310310852 737 False 865.00 865 88.24300 3 723 1 chrUn.!!$F1 720
12 TraesCS7D01G260800 chrUn 315279527 315280264 737 True 865.00 865 88.24300 3 723 1 chrUn.!!$R1 720
13 TraesCS7D01G260800 chr1D 209092204 209092950 746 True 861.00 861 87.86700 1 732 1 chr1D.!!$R1 731
14 TraesCS7D01G260800 chr3B 754853894 754854631 737 False 859.00 859 88.10800 3 723 1 chr3B.!!$F1 720
15 TraesCS7D01G260800 chr5B 673043400 673044138 738 False 852.00 852 87.88700 1 723 1 chr5B.!!$F2 722
16 TraesCS7D01G260800 chr3A 60663297 60664008 711 False 758.00 758 86.14100 1 720 1 chr3A.!!$F1 719
17 TraesCS7D01G260800 chr4B 642087709 642088939 1230 True 374.00 518 82.75050 960 2326 2 chr4B.!!$R1 1366
18 TraesCS7D01G260800 chr5A 680076702 680078548 1846 True 360.00 435 78.15050 960 2326 2 chr5A.!!$R3 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 429 0.39113 GCTAGCAACATGTGGTCGGA 60.391 55.0 10.63 0.0 39.22 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 3290 2.603021 TGCCCTGCAAAAGATGGTTAA 58.397 42.857 0.0 0.0 34.76 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 99 7.059156 TCAAAACATGTTCCCATTCCAAAAAT 58.941 30.769 12.39 0.00 0.00 1.82
95 100 7.559170 TCAAAACATGTTCCCATTCCAAAAATT 59.441 29.630 12.39 0.00 0.00 1.82
96 101 6.880942 AACATGTTCCCATTCCAAAAATTG 57.119 33.333 4.92 0.00 0.00 2.32
97 102 6.185114 ACATGTTCCCATTCCAAAAATTGA 57.815 33.333 0.00 0.00 0.00 2.57
98 103 6.599445 ACATGTTCCCATTCCAAAAATTGAA 58.401 32.000 0.00 0.00 0.00 2.69
99 104 7.059156 ACATGTTCCCATTCCAAAAATTGAAA 58.941 30.769 0.00 0.00 0.00 2.69
100 105 7.559170 ACATGTTCCCATTCCAAAAATTGAAAA 59.441 29.630 0.00 0.00 0.00 2.29
101 106 8.578151 CATGTTCCCATTCCAAAAATTGAAAAT 58.422 29.630 0.00 0.00 0.00 1.82
236 273 7.938563 TCTTAATTTGGAAAATTGTTCACGG 57.061 32.000 7.96 0.00 0.00 4.94
315 352 2.905959 TTGAATCTGACGCTGCATTG 57.094 45.000 0.00 0.00 0.00 2.82
345 385 1.378531 TATTCACGCTGACCATTGGC 58.621 50.000 1.54 0.00 0.00 4.52
389 429 0.391130 GCTAGCAACATGTGGTCGGA 60.391 55.000 10.63 0.00 39.22 4.55
410 450 1.000607 TCTTTGAGGTCGTGAGTTCGG 60.001 52.381 0.00 0.00 0.00 4.30
416 456 0.877071 GGTCGTGAGTTCGGTCACTA 59.123 55.000 10.44 0.00 44.07 2.74
459 499 0.807667 CGGCGCATTGAGCTAAGTCT 60.808 55.000 10.83 0.00 42.61 3.24
494 535 9.367160 AGAATAAGGGACACCATAAATTATTGG 57.633 33.333 5.29 5.29 40.13 3.16
663 705 5.942826 GTGGGGATCTTGATCCATTCTTATC 59.057 44.000 25.48 9.80 42.49 1.75
667 709 6.150809 GGGATCTTGATCCATTCTTATCTTGC 59.849 42.308 25.48 5.34 42.49 4.01
881 948 1.745653 GCTCTTTCAGTTATGGCCCAC 59.254 52.381 0.00 0.00 0.00 4.61
975 1042 2.844839 GCCATAGTCTCCCCCGCT 60.845 66.667 0.00 0.00 0.00 5.52
1650 2539 6.317140 TGATTGTTATTGTCTGAAGGATCTGC 59.683 38.462 0.00 0.00 0.00 4.26
1851 2751 6.922247 ACTTGATCTGTGAGATGCTTATTG 57.078 37.500 0.00 0.00 34.53 1.90
1863 2772 8.462016 GTGAGATGCTTATTGTCCTTTTGTATT 58.538 33.333 0.00 0.00 0.00 1.89
2006 2932 2.749076 TGTGGTACATCATCAGCAAAGC 59.251 45.455 0.00 0.00 44.52 3.51
2011 2937 3.630892 ACATCATCAGCAAAGCTCTCT 57.369 42.857 0.00 0.00 36.40 3.10
2218 3290 9.630098 CTTGCAGTGAGTAATATCAATTGTTTT 57.370 29.630 5.13 0.94 0.00 2.43
2476 3551 5.844004 TGTTCTTCTGTCTTTACTGGTCTC 58.156 41.667 0.00 0.00 0.00 3.36
2477 3552 5.598830 TGTTCTTCTGTCTTTACTGGTCTCT 59.401 40.000 0.00 0.00 0.00 3.10
2531 3606 2.413142 GCATCTCCAACAGCAGCCC 61.413 63.158 0.00 0.00 0.00 5.19
2539 3614 3.620488 TCCAACAGCAGCCCTATTTTAG 58.380 45.455 0.00 0.00 0.00 1.85
2540 3615 2.689983 CCAACAGCAGCCCTATTTTAGG 59.310 50.000 0.00 0.00 45.81 2.69
2612 3687 2.298163 CCAAAGCTGCTCTTGTTGGAAT 59.702 45.455 20.91 0.00 35.58 3.01
2613 3688 3.243975 CCAAAGCTGCTCTTGTTGGAATT 60.244 43.478 20.91 0.00 35.58 2.17
2644 3719 3.383620 TGTTTTATGTGCAGCCCAAAG 57.616 42.857 0.00 0.00 0.00 2.77
2648 3723 3.940209 TTATGTGCAGCCCAAAGAAAG 57.060 42.857 0.00 0.00 0.00 2.62
2668 3743 2.885676 GCAGCGCCGGATGTGTATG 61.886 63.158 5.05 0.00 0.00 2.39
2669 3744 2.588877 AGCGCCGGATGTGTATGC 60.589 61.111 5.05 0.00 0.00 3.14
2670 3745 2.588877 GCGCCGGATGTGTATGCT 60.589 61.111 5.05 0.00 0.00 3.79
2671 3746 2.885676 GCGCCGGATGTGTATGCTG 61.886 63.158 5.05 0.00 0.00 4.41
2672 3747 1.227234 CGCCGGATGTGTATGCTGA 60.227 57.895 5.05 0.00 0.00 4.26
2673 3748 1.490693 CGCCGGATGTGTATGCTGAC 61.491 60.000 5.05 0.00 0.00 3.51
2674 3749 0.461870 GCCGGATGTGTATGCTGACA 60.462 55.000 5.05 0.00 0.00 3.58
2675 3750 1.575244 CCGGATGTGTATGCTGACAG 58.425 55.000 0.00 0.00 0.00 3.51
2676 3751 0.933097 CGGATGTGTATGCTGACAGC 59.067 55.000 20.86 20.86 42.82 4.40
2677 3752 1.472201 CGGATGTGTATGCTGACAGCT 60.472 52.381 26.94 15.25 42.97 4.24
2678 3753 1.938577 GGATGTGTATGCTGACAGCTG 59.061 52.381 26.94 13.48 42.97 4.24
2693 3800 2.639286 CTGACGCAACCCAACTGC 59.361 61.111 0.00 0.00 36.41 4.40
2712 3819 0.107017 CTGCCATCCGGAACATTCCT 60.107 55.000 9.01 0.00 45.33 3.36
2719 3826 2.753966 CGGAACATTCCTGCAGCCG 61.754 63.158 8.66 10.33 45.33 5.52
2723 3830 1.064654 GAACATTCCTGCAGCCGATTC 59.935 52.381 8.66 4.31 0.00 2.52
2768 3886 0.321564 CCCGATCCAGACACTTGCAA 60.322 55.000 0.00 0.00 0.00 4.08
2776 3894 3.084039 CCAGACACTTGCAATACCATGT 58.916 45.455 0.00 0.00 0.00 3.21
2787 3905 2.624838 CAATACCATGTTGCCTGGATCC 59.375 50.000 4.20 4.20 37.22 3.36
2789 3907 2.484062 CCATGTTGCCTGGATCCGC 61.484 63.158 7.39 5.93 35.70 5.54
2793 3911 4.028490 TTGCCTGGATCCGCCGTT 62.028 61.111 7.39 0.00 40.66 4.44
2811 3929 1.921869 TTCCCCTCCTTCAATCGGCC 61.922 60.000 0.00 0.00 0.00 6.13
2841 3959 0.678950 CACAACACCCATTTCCACCC 59.321 55.000 0.00 0.00 0.00 4.61
2849 3967 1.748879 CATTTCCACCCGCCGTCAT 60.749 57.895 0.00 0.00 0.00 3.06
2873 3991 0.744414 CATCGCCCCACTGACGAATT 60.744 55.000 0.00 0.00 39.56 2.17
2880 3998 2.422597 CCCACTGACGAATTTGCACTA 58.577 47.619 0.00 0.00 0.00 2.74
2929 4048 1.466855 GAAACGTGTGAAGTGCAAGC 58.533 50.000 0.00 0.00 0.00 4.01
2932 4051 1.202568 CGTGTGAAGTGCAAGCTCG 59.797 57.895 0.00 0.00 0.00 5.03
2966 4085 4.424711 GCCATGGGAGTTCGGCCA 62.425 66.667 15.13 0.00 38.67 5.36
2972 4091 0.111446 TGGGAGTTCGGCCATTTCAA 59.889 50.000 2.24 0.00 0.00 2.69
2973 4092 1.272425 TGGGAGTTCGGCCATTTCAAT 60.272 47.619 2.24 0.00 0.00 2.57
2974 4093 1.134946 GGGAGTTCGGCCATTTCAATG 59.865 52.381 2.24 0.00 36.17 2.82
2979 4098 1.083489 TCGGCCATTTCAATGTCGAC 58.917 50.000 9.11 9.11 36.23 4.20
2986 4105 4.320494 GCCATTTCAATGTCGACTTTCAGT 60.320 41.667 17.92 0.15 34.60 3.41
3034 4153 1.516386 TTCGAGACGGCGAAGATGC 60.516 57.895 16.62 0.00 44.43 3.91
3048 4167 4.175337 ATGCCCGCACGCACCTAT 62.175 61.111 0.00 0.00 42.70 2.57
3057 4176 1.200483 CACGCACCTATGACATCGTC 58.800 55.000 0.00 0.00 0.00 4.20
3072 4191 2.433318 GTCGTGTGGAGGCTCAGC 60.433 66.667 17.69 8.67 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 202 8.980143 AATTCCACACATTTTATAAAAGACGG 57.020 30.769 15.45 11.01 0.00 4.79
214 251 6.018669 GCACCGTGAACAATTTTCCAAATTAA 60.019 34.615 1.65 0.00 0.00 1.40
292 329 2.221169 TGCAGCGTCAGATTCAAAACT 58.779 42.857 0.00 0.00 0.00 2.66
308 345 8.895845 GCGTGAATATTAAAGAATACAATGCAG 58.104 33.333 0.00 0.00 30.24 4.41
315 352 8.138365 TGGTCAGCGTGAATATTAAAGAATAC 57.862 34.615 0.00 0.00 30.24 1.89
345 385 4.443394 ACTCAAACAAACGCGTTCTACTAG 59.557 41.667 26.77 19.21 0.00 2.57
389 429 2.352814 CCGAACTCACGACCTCAAAGAT 60.353 50.000 0.00 0.00 35.09 2.40
410 450 2.851195 CAGGCCCAATATGGTAGTGAC 58.149 52.381 0.00 0.00 35.17 3.67
416 456 1.538666 GGAGCAGGCCCAATATGGT 59.461 57.895 0.00 0.00 35.17 3.55
459 499 4.072131 GTGTCCCTTATTCTGAACAAGCA 58.928 43.478 2.91 0.00 0.00 3.91
494 535 1.089920 CACATGGAAGCTACCACTGC 58.910 55.000 0.00 0.00 43.03 4.40
861 907 1.745653 GTGGGCCATAACTGAAAGAGC 59.254 52.381 10.70 0.00 37.43 4.09
862 908 2.009774 CGTGGGCCATAACTGAAAGAG 58.990 52.381 10.70 0.00 37.43 2.85
1569 2458 4.446371 ACATGCTAACTATTGACCTCAGC 58.554 43.478 0.00 0.00 0.00 4.26
1650 2539 2.668457 GCATCACACTAAACTGAGACCG 59.332 50.000 0.00 0.00 0.00 4.79
1851 2751 6.710744 TGAACTCCTCTCAAATACAAAAGGAC 59.289 38.462 0.00 0.00 0.00 3.85
1863 2772 5.013495 AGACCAATCAATGAACTCCTCTCAA 59.987 40.000 0.00 0.00 0.00 3.02
2006 2932 6.377996 TCTTTCTCTCCTGATTCAGAAGAGAG 59.622 42.308 25.64 26.64 42.63 3.20
2011 2937 5.046014 CCCTTCTTTCTCTCCTGATTCAGAA 60.046 44.000 15.36 0.00 32.44 3.02
2043 2969 8.475331 TTTGTCTAAAGAATCCTTAGCTAACG 57.525 34.615 0.86 0.00 31.15 3.18
2099 3167 6.934083 TCATTACTCACAGCATTTGACACTTA 59.066 34.615 0.00 0.00 0.00 2.24
2163 3235 3.942539 AAACGTTGAATTGCAAAAGGC 57.057 38.095 1.71 0.00 45.13 4.35
2218 3290 2.603021 TGCCCTGCAAAAGATGGTTAA 58.397 42.857 0.00 0.00 34.76 2.01
2476 3551 2.169832 CCATCAACCCTATGGCGTAG 57.830 55.000 6.77 6.77 37.67 3.51
2507 3582 2.935201 CTGCTGTTGGAGATGCTCTTAC 59.065 50.000 0.00 0.00 33.10 2.34
2531 3606 9.165035 TCATAAAACGGTAACACCCTAAAATAG 57.835 33.333 0.00 0.00 33.75 1.73
2539 3614 3.340928 AGCTCATAAAACGGTAACACCC 58.659 45.455 0.00 0.00 33.75 4.61
2540 3615 5.366829 AAAGCTCATAAAACGGTAACACC 57.633 39.130 0.00 0.00 34.05 4.16
2542 3617 5.531659 TCCAAAAGCTCATAAAACGGTAACA 59.468 36.000 0.00 0.00 0.00 2.41
2543 3618 5.854866 GTCCAAAAGCTCATAAAACGGTAAC 59.145 40.000 0.00 0.00 0.00 2.50
2587 3662 0.475906 ACAAGAGCAGCTTTGGAGGT 59.524 50.000 16.74 1.40 33.60 3.85
2589 3664 1.268899 CCAACAAGAGCAGCTTTGGAG 59.731 52.381 16.00 9.66 36.86 3.86
2590 3665 1.133823 TCCAACAAGAGCAGCTTTGGA 60.134 47.619 18.70 18.70 39.87 3.53
2592 3667 3.655276 ATTCCAACAAGAGCAGCTTTG 57.345 42.857 0.00 6.10 33.60 2.77
2594 3669 4.677673 AAAATTCCAACAAGAGCAGCTT 57.322 36.364 0.00 0.00 37.29 3.74
2613 3688 6.471519 GCTGCACATAAAACATTTTGCAAAAA 59.528 30.769 27.10 11.15 29.05 1.94
2630 3705 0.971386 CCTTTCTTTGGGCTGCACAT 59.029 50.000 4.95 0.00 0.00 3.21
2660 3735 2.625737 GTCAGCTGTCAGCATACACAT 58.374 47.619 26.23 0.86 45.56 3.21
2668 3743 2.553268 GTTGCGTCAGCTGTCAGC 59.447 61.111 17.48 17.48 45.42 4.26
2669 3744 2.320587 GGGTTGCGTCAGCTGTCAG 61.321 63.158 14.67 7.50 45.42 3.51
2670 3745 2.280797 GGGTTGCGTCAGCTGTCA 60.281 61.111 14.67 7.74 45.42 3.58
2671 3746 1.891919 TTGGGTTGCGTCAGCTGTC 60.892 57.895 14.67 7.33 45.42 3.51
2672 3747 2.186826 GTTGGGTTGCGTCAGCTGT 61.187 57.895 14.67 0.00 45.42 4.40
2673 3748 1.893808 AGTTGGGTTGCGTCAGCTG 60.894 57.895 7.63 7.63 45.42 4.24
2674 3749 1.893808 CAGTTGGGTTGCGTCAGCT 60.894 57.895 0.00 0.00 45.42 4.24
2675 3750 2.639286 CAGTTGGGTTGCGTCAGC 59.361 61.111 0.00 0.00 45.41 4.26
2676 3751 1.893808 AGCAGTTGGGTTGCGTCAG 60.894 57.895 0.00 0.00 45.98 3.51
2677 3752 2.186160 CAGCAGTTGGGTTGCGTCA 61.186 57.895 0.00 0.00 45.98 4.35
2678 3753 2.639286 CAGCAGTTGGGTTGCGTC 59.361 61.111 0.00 0.00 45.98 5.19
2693 3800 2.408333 GGAATGTTCCGGATGGCAG 58.592 57.895 4.15 0.00 37.65 4.85
2712 3819 3.797353 GGAGGGGAATCGGCTGCA 61.797 66.667 0.50 0.00 0.00 4.41
2749 3856 0.321564 TTGCAAGTGTCTGGATCGGG 60.322 55.000 0.00 0.00 0.00 5.14
2751 3858 2.609459 GGTATTGCAAGTGTCTGGATCG 59.391 50.000 4.94 0.00 0.00 3.69
2768 3886 1.202806 CGGATCCAGGCAACATGGTAT 60.203 52.381 13.41 0.00 39.01 2.73
2776 3894 3.969250 GAACGGCGGATCCAGGCAA 62.969 63.158 22.91 0.00 34.01 4.52
2779 3897 4.547367 GGGAACGGCGGATCCAGG 62.547 72.222 27.62 2.14 36.86 4.45
2782 3900 4.237207 GAGGGGAACGGCGGATCC 62.237 72.222 21.39 21.39 34.50 3.36
2787 3905 2.536997 ATTGAAGGAGGGGAACGGCG 62.537 60.000 4.80 4.80 0.00 6.46
2789 3907 0.462047 CGATTGAAGGAGGGGAACGG 60.462 60.000 0.00 0.00 0.00 4.44
2793 3911 2.375345 GGCCGATTGAAGGAGGGGA 61.375 63.158 0.00 0.00 0.00 4.81
2818 3936 0.755686 GGAAATGGGTGTTGTGGCAA 59.244 50.000 0.00 0.00 0.00 4.52
2819 3937 0.397675 TGGAAATGGGTGTTGTGGCA 60.398 50.000 0.00 0.00 0.00 4.92
2865 3983 3.303725 GCAACAGTAGTGCAAATTCGTCA 60.304 43.478 0.00 0.00 0.00 4.35
2869 3987 1.978782 GCGCAACAGTAGTGCAAATTC 59.021 47.619 0.30 0.00 41.87 2.17
2873 3991 2.603247 CGGCGCAACAGTAGTGCAA 61.603 57.895 10.83 0.00 43.94 4.08
2880 3998 3.425713 CAGATGCGGCGCAACAGT 61.426 61.111 39.46 23.13 43.62 3.55
2905 4024 0.228742 CACTTCACACGTTTCGACGG 59.771 55.000 3.90 0.00 37.45 4.79
2941 4060 2.819595 CTCCCATGGCCGAACACG 60.820 66.667 6.09 0.00 0.00 4.49
2943 4062 1.002624 GAACTCCCATGGCCGAACA 60.003 57.895 6.09 0.00 0.00 3.18
2953 4072 0.111446 TTGAAATGGCCGAACTCCCA 59.889 50.000 0.00 0.00 35.21 4.37
2954 4073 1.134946 CATTGAAATGGCCGAACTCCC 59.865 52.381 0.00 0.00 32.78 4.30
2979 4098 1.300620 TCGGCCGTCACACTGAAAG 60.301 57.895 27.15 0.00 42.29 2.62
2986 4105 2.638354 AATACCGTCGGCCGTCACA 61.638 57.895 27.15 1.49 33.66 3.58
2999 4118 1.077716 AAGGTGCCGAGCCAATACC 60.078 57.895 0.00 0.00 0.00 2.73
3034 4153 2.890474 GTCATAGGTGCGTGCGGG 60.890 66.667 0.00 0.00 0.00 6.13
3043 4162 1.134367 CCACACGACGATGTCATAGGT 59.866 52.381 0.00 0.00 32.09 3.08
3048 4167 1.584495 CCTCCACACGACGATGTCA 59.416 57.895 0.00 0.00 32.09 3.58
3077 4196 1.891060 GAAGTTGAGCTCGTGCCACG 61.891 60.000 11.80 11.80 44.19 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.