Multiple sequence alignment - TraesCS7D01G260600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G260600 chr7D 100.000 3797 0 0 1 3797 236518550 236522346 0.000000e+00 7012.0
1 TraesCS7D01G260600 chr7D 84.000 650 61 21 3040 3667 509832891 509832263 5.470000e-163 584.0
2 TraesCS7D01G260600 chr7D 82.576 132 14 6 3625 3747 192366173 192366042 1.440000e-19 108.0
3 TraesCS7D01G260600 chr7D 98.077 52 1 0 140 191 99961760 99961709 1.450000e-14 91.6
4 TraesCS7D01G260600 chr7B 94.074 2430 87 25 539 2933 212828336 212830743 0.000000e+00 3637.0
5 TraesCS7D01G260600 chr7B 92.899 169 10 2 350 517 684269822 684269989 1.050000e-60 244.0
6 TraesCS7D01G260600 chr7B 94.444 108 5 1 225 331 590913669 590913776 8.440000e-37 165.0
7 TraesCS7D01G260600 chr7A 94.059 2424 95 19 539 2933 251474795 251477198 0.000000e+00 3633.0
8 TraesCS7D01G260600 chr1D 85.761 927 58 23 2933 3797 342451552 342450638 0.000000e+00 913.0
9 TraesCS7D01G260600 chr1D 86.449 797 61 14 2929 3694 46325835 46326615 0.000000e+00 830.0
10 TraesCS7D01G260600 chr1D 84.395 314 33 6 3398 3704 9728507 9728811 1.030000e-75 294.0
11 TraesCS7D01G260600 chr1D 81.818 132 15 6 3625 3747 211711648 211711517 6.710000e-18 102.0
12 TraesCS7D01G260600 chr1D 80.882 136 17 6 3625 3751 487590893 487590758 8.680000e-17 99.0
13 TraesCS7D01G260600 chr1D 93.548 62 3 1 131 191 76088770 76088709 1.450000e-14 91.6
14 TraesCS7D01G260600 chr3B 86.364 836 55 19 3009 3797 599097770 599096947 0.000000e+00 857.0
15 TraesCS7D01G260600 chr3B 96.078 102 4 0 225 326 418027184 418027285 2.350000e-37 167.0
16 TraesCS7D01G260600 chr6D 90.135 669 48 10 3007 3667 446619079 446618421 0.000000e+00 854.0
17 TraesCS7D01G260600 chr6D 99.020 102 1 0 225 326 395370887 395370786 2.330000e-42 183.0
18 TraesCS7D01G260600 chr6D 83.721 86 5 1 2933 3009 446619192 446619107 5.260000e-09 73.1
19 TraesCS7D01G260600 chr3A 86.951 774 52 14 2932 3667 735721380 735722142 0.000000e+00 824.0
20 TraesCS7D01G260600 chr4D 85.662 816 69 28 3006 3797 204710137 204709346 0.000000e+00 815.0
21 TraesCS7D01G260600 chr4D 96.088 409 7 3 3389 3797 455752275 455751876 0.000000e+00 658.0
22 TraesCS7D01G260600 chr4D 83.470 611 55 21 3091 3667 58641777 58642375 9.340000e-146 527.0
23 TraesCS7D01G260600 chr4D 89.303 402 17 8 2933 3308 455752808 455752407 7.380000e-132 481.0
24 TraesCS7D01G260600 chr4D 98.148 54 1 0 138 191 24774832 24774779 1.120000e-15 95.3
25 TraesCS7D01G260600 chr1B 85.109 826 65 18 3018 3797 486495639 486494826 0.000000e+00 791.0
26 TraesCS7D01G260600 chr1B 93.990 416 8 5 3389 3797 630551502 630551097 6.970000e-172 614.0
27 TraesCS7D01G260600 chr1B 87.685 406 23 6 2929 3308 630552037 630551633 7.480000e-122 448.0
28 TraesCS7D01G260600 chr1B 96.040 101 4 0 225 325 645544773 645544873 8.440000e-37 165.0
29 TraesCS7D01G260600 chr1B 93.443 61 3 1 131 191 353913726 353913667 5.220000e-14 89.8
30 TraesCS7D01G260600 chr2B 87.164 670 66 12 3006 3667 253706725 253707382 0.000000e+00 743.0
31 TraesCS7D01G260600 chr2B 85.131 686 61 23 3004 3667 79360516 79359850 0.000000e+00 664.0
32 TraesCS7D01G260600 chr2B 87.500 440 13 8 3398 3797 740566660 740567097 1.600000e-128 470.0
33 TraesCS7D01G260600 chr5D 86.391 654 51 18 3040 3667 548630694 548631335 0.000000e+00 680.0
34 TraesCS7D01G260600 chr5D 83.537 164 13 11 3009 3162 170265493 170265334 1.420000e-29 141.0
35 TraesCS7D01G260600 chr5D 98.148 54 1 0 138 191 208740324 208740271 1.120000e-15 95.3
36 TraesCS7D01G260600 chr2A 85.196 689 58 20 3040 3703 89597648 89598317 0.000000e+00 667.0
37 TraesCS7D01G260600 chr2A 94.286 70 4 0 4 73 125202086 125202017 1.440000e-19 108.0
38 TraesCS7D01G260600 chr4A 84.480 683 64 28 3007 3667 744444027 744443365 1.490000e-178 636.0
39 TraesCS7D01G260600 chr4A 96.154 104 3 1 225 327 230637739 230637636 6.520000e-38 169.0
40 TraesCS7D01G260600 chr5B 92.473 186 12 2 347 530 623007864 623008049 8.090000e-67 265.0
41 TraesCS7D01G260600 chr3D 93.706 143 6 3 1 141 595677253 595677112 1.070000e-50 211.0
42 TraesCS7D01G260600 chr3D 98.020 101 2 0 225 325 110166321 110166221 3.900000e-40 176.0
43 TraesCS7D01G260600 chr3D 97.030 101 2 1 225 325 536433133 536433232 6.520000e-38 169.0
44 TraesCS7D01G260600 chr3D 98.305 59 1 0 133 191 112348987 112348929 1.870000e-18 104.0
45 TraesCS7D01G260600 chr3D 95.082 61 3 0 131 191 18228444 18228384 3.120000e-16 97.1
46 TraesCS7D01G260600 chr3D 95.082 61 1 2 131 191 156009750 156009692 1.120000e-15 95.3
47 TraesCS7D01G260600 chr2D 99.010 101 1 0 225 325 24727859 24727959 8.380000e-42 182.0
48 TraesCS7D01G260600 chr2D 99.010 101 1 0 225 325 478211822 478211922 8.380000e-42 182.0
49 TraesCS7D01G260600 chr1A 96.552 58 1 1 134 191 498199767 498199711 1.120000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G260600 chr7D 236518550 236522346 3796 False 7012.00 7012 100.0000 1 3797 1 chr7D.!!$F1 3796
1 TraesCS7D01G260600 chr7D 509832263 509832891 628 True 584.00 584 84.0000 3040 3667 1 chr7D.!!$R3 627
2 TraesCS7D01G260600 chr7B 212828336 212830743 2407 False 3637.00 3637 94.0740 539 2933 1 chr7B.!!$F1 2394
3 TraesCS7D01G260600 chr7A 251474795 251477198 2403 False 3633.00 3633 94.0590 539 2933 1 chr7A.!!$F1 2394
4 TraesCS7D01G260600 chr1D 342450638 342451552 914 True 913.00 913 85.7610 2933 3797 1 chr1D.!!$R3 864
5 TraesCS7D01G260600 chr1D 46325835 46326615 780 False 830.00 830 86.4490 2929 3694 1 chr1D.!!$F2 765
6 TraesCS7D01G260600 chr3B 599096947 599097770 823 True 857.00 857 86.3640 3009 3797 1 chr3B.!!$R1 788
7 TraesCS7D01G260600 chr6D 446618421 446619192 771 True 463.55 854 86.9280 2933 3667 2 chr6D.!!$R2 734
8 TraesCS7D01G260600 chr3A 735721380 735722142 762 False 824.00 824 86.9510 2932 3667 1 chr3A.!!$F1 735
9 TraesCS7D01G260600 chr4D 204709346 204710137 791 True 815.00 815 85.6620 3006 3797 1 chr4D.!!$R2 791
10 TraesCS7D01G260600 chr4D 455751876 455752808 932 True 569.50 658 92.6955 2933 3797 2 chr4D.!!$R3 864
11 TraesCS7D01G260600 chr4D 58641777 58642375 598 False 527.00 527 83.4700 3091 3667 1 chr4D.!!$F1 576
12 TraesCS7D01G260600 chr1B 486494826 486495639 813 True 791.00 791 85.1090 3018 3797 1 chr1B.!!$R2 779
13 TraesCS7D01G260600 chr1B 630551097 630552037 940 True 531.00 614 90.8375 2929 3797 2 chr1B.!!$R3 868
14 TraesCS7D01G260600 chr2B 253706725 253707382 657 False 743.00 743 87.1640 3006 3667 1 chr2B.!!$F1 661
15 TraesCS7D01G260600 chr2B 79359850 79360516 666 True 664.00 664 85.1310 3004 3667 1 chr2B.!!$R1 663
16 TraesCS7D01G260600 chr5D 548630694 548631335 641 False 680.00 680 86.3910 3040 3667 1 chr5D.!!$F1 627
17 TraesCS7D01G260600 chr2A 89597648 89598317 669 False 667.00 667 85.1960 3040 3703 1 chr2A.!!$F1 663
18 TraesCS7D01G260600 chr4A 744443365 744444027 662 True 636.00 636 84.4800 3007 3667 1 chr4A.!!$R2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.034089 GCCCATGGCCAGATATACCC 60.034 60.0 13.05 0.0 44.06 3.69 F
423 424 0.034380 GACTCCCTTTGGTTAGCCCC 60.034 60.0 0.00 0.0 0.00 5.80 F
427 428 0.041090 CCCTTTGGTTAGCCCCATGT 59.959 55.0 0.00 0.0 33.60 3.21 F
482 483 0.095935 CTGTAGCGCAACACATCAGC 59.904 55.0 11.47 0.0 0.00 4.26 F
488 489 0.723414 CGCAACACATCAGCCTGTAG 59.277 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1313 0.248907 CGTACAGGTAGTCGGCCATG 60.249 60.000 2.24 0.00 0.00 3.66 R
1663 1710 0.534412 ATCTTCTGGTCGAGCACCTG 59.466 55.000 14.39 4.48 46.98 4.00 R
1743 1790 1.636570 CGAAGACCTCGTCGCAGAGA 61.637 60.000 8.27 0.00 42.89 3.10 R
2091 2138 2.665649 TGATCACGTAGCGGTTCATT 57.334 45.000 0.00 0.00 0.00 2.57 R
2827 2874 3.436015 CCTCTGAAGAATGTTGCAGTCAG 59.564 47.826 0.00 0.00 35.01 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.516161 ACGAAAAACTCTTACGGGGC 58.484 50.000 0.00 0.00 0.00 5.80
21 22 1.071228 ACGAAAAACTCTTACGGGGCT 59.929 47.619 0.00 0.00 0.00 5.19
22 23 1.463444 CGAAAAACTCTTACGGGGCTG 59.537 52.381 0.00 0.00 0.00 4.85
23 24 2.774687 GAAAAACTCTTACGGGGCTGA 58.225 47.619 0.00 0.00 0.00 4.26
24 25 2.474410 AAAACTCTTACGGGGCTGAG 57.526 50.000 0.00 0.00 0.00 3.35
25 26 0.613777 AAACTCTTACGGGGCTGAGG 59.386 55.000 0.00 0.00 0.00 3.86
26 27 0.544595 AACTCTTACGGGGCTGAGGT 60.545 55.000 0.00 0.00 0.00 3.85
27 28 1.258445 ACTCTTACGGGGCTGAGGTG 61.258 60.000 0.00 0.00 0.00 4.00
28 29 1.961180 CTCTTACGGGGCTGAGGTGG 61.961 65.000 0.00 0.00 0.00 4.61
29 30 1.987855 CTTACGGGGCTGAGGTGGA 60.988 63.158 0.00 0.00 0.00 4.02
30 31 1.961180 CTTACGGGGCTGAGGTGGAG 61.961 65.000 0.00 0.00 0.00 3.86
31 32 2.449967 TTACGGGGCTGAGGTGGAGA 62.450 60.000 0.00 0.00 0.00 3.71
32 33 3.775654 CGGGGCTGAGGTGGAGAC 61.776 72.222 0.00 0.00 0.00 3.36
33 34 3.775654 GGGGCTGAGGTGGAGACG 61.776 72.222 0.00 0.00 0.00 4.18
34 35 4.459089 GGGCTGAGGTGGAGACGC 62.459 72.222 0.00 0.00 41.20 5.19
35 36 3.695606 GGCTGAGGTGGAGACGCA 61.696 66.667 0.00 0.00 44.70 5.24
36 37 2.125753 GCTGAGGTGGAGACGCAG 60.126 66.667 0.00 0.00 44.70 5.18
37 38 2.575993 CTGAGGTGGAGACGCAGG 59.424 66.667 0.00 0.00 44.70 4.85
38 39 1.979155 CTGAGGTGGAGACGCAGGA 60.979 63.158 0.00 0.00 44.70 3.86
39 40 1.533033 TGAGGTGGAGACGCAGGAA 60.533 57.895 0.00 0.00 44.70 3.36
40 41 0.904865 TGAGGTGGAGACGCAGGAAT 60.905 55.000 0.00 0.00 44.70 3.01
41 42 0.250513 GAGGTGGAGACGCAGGAATT 59.749 55.000 0.00 0.00 44.70 2.17
42 43 1.480954 GAGGTGGAGACGCAGGAATTA 59.519 52.381 0.00 0.00 44.70 1.40
43 44 1.906574 AGGTGGAGACGCAGGAATTAA 59.093 47.619 0.00 0.00 44.70 1.40
44 45 2.007608 GGTGGAGACGCAGGAATTAAC 58.992 52.381 0.00 0.00 44.70 2.01
45 46 2.007608 GTGGAGACGCAGGAATTAACC 58.992 52.381 0.00 0.00 41.67 2.85
46 47 1.626321 TGGAGACGCAGGAATTAACCA 59.374 47.619 0.00 0.00 0.00 3.67
47 48 2.238646 TGGAGACGCAGGAATTAACCAT 59.761 45.455 0.00 0.00 0.00 3.55
48 49 2.614057 GGAGACGCAGGAATTAACCATG 59.386 50.000 0.00 0.00 0.00 3.66
49 50 2.614057 GAGACGCAGGAATTAACCATGG 59.386 50.000 11.19 11.19 0.00 3.66
50 51 1.676006 GACGCAGGAATTAACCATGGG 59.324 52.381 18.09 0.00 0.00 4.00
51 52 0.385390 CGCAGGAATTAACCATGGGC 59.615 55.000 18.09 5.19 0.00 5.36
52 53 0.752658 GCAGGAATTAACCATGGGCC 59.247 55.000 18.09 7.26 0.00 5.80
53 54 1.032014 CAGGAATTAACCATGGGCCG 58.968 55.000 18.09 0.00 0.00 6.13
54 55 0.106217 AGGAATTAACCATGGGCCGG 60.106 55.000 18.09 0.00 0.00 6.13
55 56 0.396556 GGAATTAACCATGGGCCGGT 60.397 55.000 18.09 0.00 38.85 5.28
56 57 1.029681 GAATTAACCATGGGCCGGTC 58.970 55.000 18.09 0.00 34.99 4.79
57 58 0.396556 AATTAACCATGGGCCGGTCC 60.397 55.000 21.35 21.35 34.99 4.46
66 67 3.332385 GGCCGGTCCCCAAGGTTA 61.332 66.667 1.90 0.00 0.00 2.85
67 68 2.758434 GCCGGTCCCCAAGGTTAA 59.242 61.111 1.90 0.00 0.00 2.01
68 69 1.075305 GCCGGTCCCCAAGGTTAAA 59.925 57.895 1.90 0.00 0.00 1.52
69 70 0.323999 GCCGGTCCCCAAGGTTAAAT 60.324 55.000 1.90 0.00 0.00 1.40
70 71 1.470051 CCGGTCCCCAAGGTTAAATG 58.530 55.000 0.00 0.00 0.00 2.32
71 72 0.815095 CGGTCCCCAAGGTTAAATGC 59.185 55.000 0.00 0.00 0.00 3.56
72 73 1.888826 CGGTCCCCAAGGTTAAATGCA 60.889 52.381 0.00 0.00 0.00 3.96
73 74 1.824852 GGTCCCCAAGGTTAAATGCAG 59.175 52.381 0.00 0.00 0.00 4.41
74 75 1.824852 GTCCCCAAGGTTAAATGCAGG 59.175 52.381 0.00 0.00 0.00 4.85
75 76 1.194218 CCCCAAGGTTAAATGCAGGG 58.806 55.000 0.00 0.00 34.58 4.45
76 77 1.194218 CCCAAGGTTAAATGCAGGGG 58.806 55.000 0.00 0.00 0.00 4.79
77 78 1.272985 CCCAAGGTTAAATGCAGGGGA 60.273 52.381 0.00 0.00 36.40 4.81
78 79 1.824852 CCAAGGTTAAATGCAGGGGAC 59.175 52.381 0.00 0.00 0.00 4.46
79 80 2.557452 CCAAGGTTAAATGCAGGGGACT 60.557 50.000 0.00 0.00 46.44 3.85
95 96 5.574188 AGGGGACTGATTGATTATATTGGC 58.426 41.667 0.00 0.00 41.13 4.52
96 97 5.074929 AGGGGACTGATTGATTATATTGGCA 59.925 40.000 0.00 0.00 41.13 4.92
97 98 5.183904 GGGGACTGATTGATTATATTGGCAC 59.816 44.000 0.00 0.00 0.00 5.01
98 99 5.769662 GGGACTGATTGATTATATTGGCACA 59.230 40.000 0.00 0.00 0.00 4.57
99 100 6.294176 GGGACTGATTGATTATATTGGCACAC 60.294 42.308 0.00 0.00 39.29 3.82
100 101 6.304356 ACTGATTGATTATATTGGCACACG 57.696 37.500 0.00 0.00 39.29 4.49
101 102 5.822519 ACTGATTGATTATATTGGCACACGT 59.177 36.000 0.00 0.00 39.29 4.49
102 103 6.017934 ACTGATTGATTATATTGGCACACGTC 60.018 38.462 0.00 0.00 39.29 4.34
103 104 6.054941 TGATTGATTATATTGGCACACGTCT 58.945 36.000 0.00 0.00 39.29 4.18
104 105 6.542005 TGATTGATTATATTGGCACACGTCTT 59.458 34.615 0.00 0.00 39.29 3.01
105 106 5.984233 TGATTATATTGGCACACGTCTTC 57.016 39.130 0.00 0.00 39.29 2.87
106 107 4.814234 TGATTATATTGGCACACGTCTTCC 59.186 41.667 0.00 0.00 39.29 3.46
107 108 4.481368 TTATATTGGCACACGTCTTCCT 57.519 40.909 0.00 0.00 39.29 3.36
108 109 2.093306 TATTGGCACACGTCTTCCTG 57.907 50.000 0.00 0.00 39.29 3.86
109 110 0.108585 ATTGGCACACGTCTTCCTGT 59.891 50.000 0.00 0.00 39.29 4.00
110 111 0.753867 TTGGCACACGTCTTCCTGTA 59.246 50.000 0.00 0.00 39.29 2.74
111 112 0.753867 TGGCACACGTCTTCCTGTAA 59.246 50.000 0.00 0.00 0.00 2.41
112 113 1.270094 TGGCACACGTCTTCCTGTAAG 60.270 52.381 0.00 0.00 36.45 2.34
113 114 1.270147 GGCACACGTCTTCCTGTAAGT 60.270 52.381 0.00 0.00 36.51 2.24
114 115 2.480845 GCACACGTCTTCCTGTAAGTT 58.519 47.619 0.00 0.00 36.51 2.66
115 116 2.475487 GCACACGTCTTCCTGTAAGTTC 59.525 50.000 0.00 0.00 36.51 3.01
116 117 3.057734 CACACGTCTTCCTGTAAGTTCC 58.942 50.000 0.00 0.00 36.51 3.62
117 118 2.963782 ACACGTCTTCCTGTAAGTTCCT 59.036 45.455 0.00 0.00 36.51 3.36
118 119 3.387050 ACACGTCTTCCTGTAAGTTCCTT 59.613 43.478 0.00 0.00 36.51 3.36
119 120 3.988517 CACGTCTTCCTGTAAGTTCCTTC 59.011 47.826 0.00 0.00 36.51 3.46
120 121 3.006644 ACGTCTTCCTGTAAGTTCCTTCC 59.993 47.826 0.00 0.00 36.51 3.46
121 122 3.586892 GTCTTCCTGTAAGTTCCTTCCG 58.413 50.000 0.00 0.00 36.51 4.30
122 123 3.006644 GTCTTCCTGTAAGTTCCTTCCGT 59.993 47.826 0.00 0.00 36.51 4.69
123 124 3.006537 TCTTCCTGTAAGTTCCTTCCGTG 59.993 47.826 0.00 0.00 36.51 4.94
124 125 2.600790 TCCTGTAAGTTCCTTCCGTGA 58.399 47.619 0.00 0.00 0.00 4.35
125 126 2.298163 TCCTGTAAGTTCCTTCCGTGAC 59.702 50.000 0.00 0.00 0.00 3.67
126 127 2.612221 CCTGTAAGTTCCTTCCGTGACC 60.612 54.545 0.00 0.00 0.00 4.02
127 128 1.345415 TGTAAGTTCCTTCCGTGACCC 59.655 52.381 0.00 0.00 0.00 4.46
128 129 0.978907 TAAGTTCCTTCCGTGACCCC 59.021 55.000 0.00 0.00 0.00 4.95
129 130 1.057851 AAGTTCCTTCCGTGACCCCA 61.058 55.000 0.00 0.00 0.00 4.96
130 131 1.003718 GTTCCTTCCGTGACCCCAG 60.004 63.158 0.00 0.00 0.00 4.45
131 132 2.890766 TTCCTTCCGTGACCCCAGC 61.891 63.158 0.00 0.00 0.00 4.85
132 133 4.410400 CCTTCCGTGACCCCAGCC 62.410 72.222 0.00 0.00 0.00 4.85
133 134 4.410400 CTTCCGTGACCCCAGCCC 62.410 72.222 0.00 0.00 0.00 5.19
137 138 3.087253 CGTGACCCCAGCCCCATA 61.087 66.667 0.00 0.00 0.00 2.74
138 139 2.675242 CGTGACCCCAGCCCCATAA 61.675 63.158 0.00 0.00 0.00 1.90
139 140 1.227383 GTGACCCCAGCCCCATAAG 59.773 63.158 0.00 0.00 0.00 1.73
140 141 1.230149 TGACCCCAGCCCCATAAGT 60.230 57.895 0.00 0.00 0.00 2.24
141 142 0.045008 TGACCCCAGCCCCATAAGTA 59.955 55.000 0.00 0.00 0.00 2.24
142 143 0.765510 GACCCCAGCCCCATAAGTAG 59.234 60.000 0.00 0.00 0.00 2.57
143 144 0.045778 ACCCCAGCCCCATAAGTAGT 59.954 55.000 0.00 0.00 0.00 2.73
144 145 0.765510 CCCCAGCCCCATAAGTAGTC 59.234 60.000 0.00 0.00 0.00 2.59
145 146 0.765510 CCCAGCCCCATAAGTAGTCC 59.234 60.000 0.00 0.00 0.00 3.85
146 147 1.695989 CCCAGCCCCATAAGTAGTCCT 60.696 57.143 0.00 0.00 0.00 3.85
147 148 1.417890 CCAGCCCCATAAGTAGTCCTG 59.582 57.143 0.00 0.00 0.00 3.86
148 149 1.417890 CAGCCCCATAAGTAGTCCTGG 59.582 57.143 0.00 0.00 0.00 4.45
149 150 0.108774 GCCCCATAAGTAGTCCTGGC 59.891 60.000 0.00 0.00 0.00 4.85
150 151 0.765510 CCCCATAAGTAGTCCTGGCC 59.234 60.000 0.00 0.00 0.00 5.36
151 152 1.507140 CCCATAAGTAGTCCTGGCCA 58.493 55.000 4.71 4.71 0.00 5.36
152 153 2.057922 CCCATAAGTAGTCCTGGCCAT 58.942 52.381 5.51 0.00 0.00 4.40
153 154 2.039084 CCCATAAGTAGTCCTGGCCATC 59.961 54.545 5.51 0.00 0.00 3.51
154 155 2.975489 CCATAAGTAGTCCTGGCCATCT 59.025 50.000 5.51 8.22 0.00 2.90
155 156 3.007398 CCATAAGTAGTCCTGGCCATCTC 59.993 52.174 5.51 0.00 0.00 2.75
156 157 2.254152 AAGTAGTCCTGGCCATCTCA 57.746 50.000 5.51 0.00 0.00 3.27
157 158 1.786937 AGTAGTCCTGGCCATCTCAG 58.213 55.000 5.51 0.00 0.00 3.35
217 218 2.421220 TTTTTGTCGGCCTTGACCC 58.579 52.632 0.00 0.00 38.11 4.46
218 219 0.106419 TTTTTGTCGGCCTTGACCCT 60.106 50.000 0.00 0.00 38.11 4.34
219 220 0.821711 TTTTGTCGGCCTTGACCCTG 60.822 55.000 0.00 0.00 38.11 4.45
220 221 3.842925 TTGTCGGCCTTGACCCTGC 62.843 63.158 0.00 0.00 38.11 4.85
226 227 4.410400 CCTTGACCCTGCCGACCC 62.410 72.222 0.00 0.00 0.00 4.46
227 228 4.760047 CTTGACCCTGCCGACCCG 62.760 72.222 0.00 0.00 0.00 5.28
230 231 4.530857 GACCCTGCCGACCCGATG 62.531 72.222 0.00 0.00 0.00 3.84
241 242 4.977393 CCCGATGGTAGGGTTTGG 57.023 61.111 0.00 0.00 43.89 3.28
242 243 1.226262 CCCGATGGTAGGGTTTGGG 59.774 63.158 0.00 0.00 43.89 4.12
243 244 1.276140 CCCGATGGTAGGGTTTGGGA 61.276 60.000 0.00 0.00 43.89 4.37
244 245 0.180406 CCGATGGTAGGGTTTGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
245 246 0.180406 CGATGGTAGGGTTTGGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
246 247 0.551396 GATGGTAGGGTTTGGGAGGG 59.449 60.000 0.00 0.00 0.00 4.30
247 248 1.580994 ATGGTAGGGTTTGGGAGGGC 61.581 60.000 0.00 0.00 0.00 5.19
248 249 2.681591 GTAGGGTTTGGGAGGGCC 59.318 66.667 0.00 0.00 0.00 5.80
249 250 1.929088 GTAGGGTTTGGGAGGGCCT 60.929 63.158 5.25 5.25 0.00 5.19
250 251 1.928567 TAGGGTTTGGGAGGGCCTG 60.929 63.158 12.95 0.00 0.00 4.85
251 252 4.382541 GGGTTTGGGAGGGCCTGG 62.383 72.222 12.95 0.00 0.00 4.45
252 253 4.382541 GGTTTGGGAGGGCCTGGG 62.383 72.222 12.95 0.00 0.00 4.45
263 264 4.198087 GCCTGGGCCTCAGTTTTT 57.802 55.556 16.96 0.00 41.83 1.94
326 327 3.577389 GCCCATGGCCAGATATACC 57.423 57.895 13.05 0.00 44.06 2.73
327 328 0.034089 GCCCATGGCCAGATATACCC 60.034 60.000 13.05 0.00 44.06 3.69
328 329 1.371467 CCCATGGCCAGATATACCCA 58.629 55.000 13.05 0.00 0.00 4.51
329 330 1.925255 CCCATGGCCAGATATACCCAT 59.075 52.381 13.05 0.00 38.56 4.00
330 331 3.122480 CCCATGGCCAGATATACCCATA 58.878 50.000 13.05 0.00 36.36 2.74
331 332 3.527253 CCCATGGCCAGATATACCCATAA 59.473 47.826 13.05 0.00 36.36 1.90
332 333 4.385643 CCCATGGCCAGATATACCCATAAG 60.386 50.000 13.05 0.00 36.36 1.73
333 334 4.228210 CCATGGCCAGATATACCCATAAGT 59.772 45.833 13.05 0.00 36.36 2.24
334 335 4.908601 TGGCCAGATATACCCATAAGTG 57.091 45.455 0.00 0.00 0.00 3.16
335 336 4.239495 TGGCCAGATATACCCATAAGTGT 58.761 43.478 0.00 0.00 0.00 3.55
336 337 4.286032 TGGCCAGATATACCCATAAGTGTC 59.714 45.833 0.00 0.00 0.00 3.67
337 338 4.532521 GGCCAGATATACCCATAAGTGTCT 59.467 45.833 0.00 0.00 0.00 3.41
338 339 5.337652 GGCCAGATATACCCATAAGTGTCTC 60.338 48.000 0.00 0.00 0.00 3.36
339 340 5.246203 GCCAGATATACCCATAAGTGTCTCA 59.754 44.000 0.00 0.00 0.00 3.27
340 341 6.573289 GCCAGATATACCCATAAGTGTCTCAG 60.573 46.154 0.00 0.00 0.00 3.35
341 342 6.495181 CCAGATATACCCATAAGTGTCTCAGT 59.505 42.308 0.00 0.00 0.00 3.41
342 343 7.015682 CCAGATATACCCATAAGTGTCTCAGTT 59.984 40.741 0.00 0.00 0.00 3.16
343 344 8.424918 CAGATATACCCATAAGTGTCTCAGTTT 58.575 37.037 0.00 0.00 0.00 2.66
344 345 8.993424 AGATATACCCATAAGTGTCTCAGTTTT 58.007 33.333 0.00 0.00 0.00 2.43
345 346 9.262358 GATATACCCATAAGTGTCTCAGTTTTC 57.738 37.037 0.00 0.00 0.00 2.29
346 347 4.315803 ACCCATAAGTGTCTCAGTTTTCG 58.684 43.478 0.00 0.00 0.00 3.46
347 348 3.684788 CCCATAAGTGTCTCAGTTTTCGG 59.315 47.826 0.00 0.00 0.00 4.30
348 349 3.684788 CCATAAGTGTCTCAGTTTTCGGG 59.315 47.826 0.00 0.00 0.00 5.14
349 350 1.594331 AAGTGTCTCAGTTTTCGGGC 58.406 50.000 0.00 0.00 0.00 6.13
350 351 0.468226 AGTGTCTCAGTTTTCGGGCA 59.532 50.000 0.00 0.00 0.00 5.36
351 352 1.134220 AGTGTCTCAGTTTTCGGGCAA 60.134 47.619 0.00 0.00 0.00 4.52
352 353 1.880027 GTGTCTCAGTTTTCGGGCAAT 59.120 47.619 0.00 0.00 0.00 3.56
353 354 3.071479 GTGTCTCAGTTTTCGGGCAATA 58.929 45.455 0.00 0.00 0.00 1.90
354 355 3.500680 GTGTCTCAGTTTTCGGGCAATAA 59.499 43.478 0.00 0.00 0.00 1.40
355 356 4.156008 GTGTCTCAGTTTTCGGGCAATAAT 59.844 41.667 0.00 0.00 0.00 1.28
356 357 4.155826 TGTCTCAGTTTTCGGGCAATAATG 59.844 41.667 0.00 0.00 0.00 1.90
374 375 8.589335 CAATAATGCTACACTTACGGACTATT 57.411 34.615 0.00 0.00 0.00 1.73
375 376 8.487970 CAATAATGCTACACTTACGGACTATTG 58.512 37.037 0.00 0.00 0.00 1.90
376 377 3.777478 TGCTACACTTACGGACTATTGC 58.223 45.455 0.00 0.00 0.00 3.56
377 378 3.446161 TGCTACACTTACGGACTATTGCT 59.554 43.478 0.00 0.00 0.00 3.91
378 379 4.081862 TGCTACACTTACGGACTATTGCTT 60.082 41.667 0.00 0.00 0.00 3.91
379 380 5.125900 TGCTACACTTACGGACTATTGCTTA 59.874 40.000 0.00 0.00 0.00 3.09
380 381 5.458126 GCTACACTTACGGACTATTGCTTAC 59.542 44.000 0.00 0.00 0.00 2.34
381 382 4.418392 ACACTTACGGACTATTGCTTACG 58.582 43.478 0.00 0.00 0.00 3.18
382 383 3.795101 CACTTACGGACTATTGCTTACGG 59.205 47.826 0.00 0.00 0.00 4.02
383 384 3.696051 ACTTACGGACTATTGCTTACGGA 59.304 43.478 0.00 0.00 0.00 4.69
384 385 4.158394 ACTTACGGACTATTGCTTACGGAA 59.842 41.667 0.00 0.00 0.00 4.30
385 386 3.814005 ACGGACTATTGCTTACGGAAT 57.186 42.857 0.00 0.00 35.26 3.01
386 387 3.454375 ACGGACTATTGCTTACGGAATG 58.546 45.455 0.00 0.00 33.03 2.67
387 388 3.131577 ACGGACTATTGCTTACGGAATGA 59.868 43.478 0.00 0.00 33.03 2.57
388 389 3.736252 CGGACTATTGCTTACGGAATGAG 59.264 47.826 0.00 0.00 33.03 2.90
389 390 4.499188 CGGACTATTGCTTACGGAATGAGA 60.499 45.833 0.00 0.00 33.03 3.27
390 391 5.542779 GGACTATTGCTTACGGAATGAGAT 58.457 41.667 0.00 0.00 33.03 2.75
391 392 5.992217 GGACTATTGCTTACGGAATGAGATT 59.008 40.000 0.00 0.00 33.03 2.40
392 393 7.152645 GGACTATTGCTTACGGAATGAGATTA 58.847 38.462 0.00 0.00 33.03 1.75
393 394 7.116519 GGACTATTGCTTACGGAATGAGATTAC 59.883 40.741 0.00 0.00 33.03 1.89
403 404 5.470368 CGGAATGAGATTACGGACATATGT 58.530 41.667 8.43 8.43 42.75 2.29
404 405 5.346011 CGGAATGAGATTACGGACATATGTG 59.654 44.000 14.43 2.00 42.75 3.21
405 406 6.455647 GGAATGAGATTACGGACATATGTGA 58.544 40.000 14.43 0.00 0.00 3.58
406 407 6.366332 GGAATGAGATTACGGACATATGTGAC 59.634 42.308 14.43 5.07 0.00 3.67
407 408 6.656632 ATGAGATTACGGACATATGTGACT 57.343 37.500 14.43 1.87 0.00 3.41
408 409 6.073327 TGAGATTACGGACATATGTGACTC 57.927 41.667 14.43 10.68 0.00 3.36
409 410 5.009710 TGAGATTACGGACATATGTGACTCC 59.990 44.000 14.43 7.17 0.00 3.85
410 411 4.281182 AGATTACGGACATATGTGACTCCC 59.719 45.833 14.43 6.77 0.00 4.30
411 412 2.160721 ACGGACATATGTGACTCCCT 57.839 50.000 14.43 0.00 0.00 4.20
412 413 2.467880 ACGGACATATGTGACTCCCTT 58.532 47.619 14.43 0.00 0.00 3.95
413 414 2.838202 ACGGACATATGTGACTCCCTTT 59.162 45.455 14.43 0.00 0.00 3.11
414 415 3.198068 CGGACATATGTGACTCCCTTTG 58.802 50.000 14.43 0.00 0.00 2.77
415 416 3.545703 GGACATATGTGACTCCCTTTGG 58.454 50.000 14.43 0.00 0.00 3.28
416 417 3.054361 GGACATATGTGACTCCCTTTGGT 60.054 47.826 14.43 0.00 0.00 3.67
417 418 4.567747 GGACATATGTGACTCCCTTTGGTT 60.568 45.833 14.43 0.00 0.00 3.67
418 419 5.338871 GGACATATGTGACTCCCTTTGGTTA 60.339 44.000 14.43 0.00 0.00 2.85
419 420 5.745227 ACATATGTGACTCCCTTTGGTTAG 58.255 41.667 7.78 0.00 0.00 2.34
420 421 2.561478 TGTGACTCCCTTTGGTTAGC 57.439 50.000 0.00 0.00 0.00 3.09
421 422 1.073284 TGTGACTCCCTTTGGTTAGCC 59.927 52.381 0.00 0.00 0.00 3.93
422 423 0.696501 TGACTCCCTTTGGTTAGCCC 59.303 55.000 0.00 0.00 0.00 5.19
423 424 0.034380 GACTCCCTTTGGTTAGCCCC 60.034 60.000 0.00 0.00 0.00 5.80
424 425 0.774491 ACTCCCTTTGGTTAGCCCCA 60.774 55.000 0.00 0.00 0.00 4.96
425 426 0.631212 CTCCCTTTGGTTAGCCCCAT 59.369 55.000 0.00 0.00 33.60 4.00
426 427 0.334676 TCCCTTTGGTTAGCCCCATG 59.665 55.000 0.00 0.00 33.60 3.66
427 428 0.041090 CCCTTTGGTTAGCCCCATGT 59.959 55.000 0.00 0.00 33.60 3.21
428 429 1.286553 CCCTTTGGTTAGCCCCATGTA 59.713 52.381 0.00 0.00 33.60 2.29
429 430 2.291930 CCCTTTGGTTAGCCCCATGTAA 60.292 50.000 0.00 0.00 33.60 2.41
430 431 3.436243 CCTTTGGTTAGCCCCATGTAAA 58.564 45.455 0.00 0.00 33.60 2.01
431 432 4.030216 CCTTTGGTTAGCCCCATGTAAAT 58.970 43.478 0.00 0.00 33.60 1.40
432 433 4.099419 CCTTTGGTTAGCCCCATGTAAATC 59.901 45.833 0.00 0.00 33.60 2.17
433 434 4.323569 TTGGTTAGCCCCATGTAAATCA 57.676 40.909 0.00 0.00 33.60 2.57
434 435 3.897239 TGGTTAGCCCCATGTAAATCAG 58.103 45.455 0.00 0.00 0.00 2.90
435 436 3.222603 GGTTAGCCCCATGTAAATCAGG 58.777 50.000 0.00 0.00 0.00 3.86
436 437 3.222603 GTTAGCCCCATGTAAATCAGGG 58.777 50.000 0.00 0.00 46.30 4.45
437 438 1.308877 AGCCCCATGTAAATCAGGGT 58.691 50.000 3.30 0.00 45.41 4.34
438 439 1.063717 AGCCCCATGTAAATCAGGGTG 60.064 52.381 3.30 0.00 45.41 4.61
439 440 2.028996 GCCCCATGTAAATCAGGGTGG 61.029 57.143 3.30 0.00 45.41 4.61
440 441 1.411501 CCCCATGTAAATCAGGGTGGG 60.412 57.143 1.25 1.25 45.41 4.61
441 442 1.411501 CCCATGTAAATCAGGGTGGGG 60.412 57.143 0.26 0.00 45.41 4.96
442 443 1.402787 CATGTAAATCAGGGTGGGGC 58.597 55.000 0.00 0.00 0.00 5.80
443 444 0.261696 ATGTAAATCAGGGTGGGGCC 59.738 55.000 0.00 0.00 0.00 5.80
444 445 0.849094 TGTAAATCAGGGTGGGGCCT 60.849 55.000 0.84 0.00 37.43 5.19
445 446 0.395724 GTAAATCAGGGTGGGGCCTG 60.396 60.000 0.84 0.00 37.43 4.85
446 447 2.223464 TAAATCAGGGTGGGGCCTGC 62.223 60.000 0.84 0.00 37.43 4.85
452 453 4.284550 GGTGGGGCCTGCAGACAA 62.285 66.667 17.39 0.00 0.00 3.18
453 454 2.203480 GTGGGGCCTGCAGACAAA 60.203 61.111 17.39 0.00 0.00 2.83
454 455 1.832167 GTGGGGCCTGCAGACAAAA 60.832 57.895 17.39 0.00 0.00 2.44
455 456 1.075674 TGGGGCCTGCAGACAAAAA 60.076 52.632 17.39 0.00 0.00 1.94
456 457 0.471591 TGGGGCCTGCAGACAAAAAT 60.472 50.000 17.39 0.00 0.00 1.82
457 458 1.203112 TGGGGCCTGCAGACAAAAATA 60.203 47.619 17.39 0.00 0.00 1.40
458 459 1.478105 GGGGCCTGCAGACAAAAATAG 59.522 52.381 17.39 0.00 0.00 1.73
459 460 1.478105 GGGCCTGCAGACAAAAATAGG 59.522 52.381 17.39 0.00 0.00 2.57
460 461 1.478105 GGCCTGCAGACAAAAATAGGG 59.522 52.381 17.39 0.00 0.00 3.53
461 462 2.446435 GCCTGCAGACAAAAATAGGGA 58.554 47.619 17.39 0.00 0.00 4.20
462 463 2.825532 GCCTGCAGACAAAAATAGGGAA 59.174 45.455 17.39 0.00 0.00 3.97
463 464 3.367395 GCCTGCAGACAAAAATAGGGAAC 60.367 47.826 17.39 0.00 0.00 3.62
465 466 4.082571 CCTGCAGACAAAAATAGGGAACTG 60.083 45.833 17.39 0.00 43.88 3.16
466 467 4.469657 TGCAGACAAAAATAGGGAACTGT 58.530 39.130 0.00 0.00 43.88 3.55
467 468 5.626142 TGCAGACAAAAATAGGGAACTGTA 58.374 37.500 0.00 0.00 43.88 2.74
468 469 5.705441 TGCAGACAAAAATAGGGAACTGTAG 59.295 40.000 0.00 0.00 43.88 2.74
469 470 5.392057 GCAGACAAAAATAGGGAACTGTAGC 60.392 44.000 0.00 0.00 43.88 3.58
470 471 4.935808 AGACAAAAATAGGGAACTGTAGCG 59.064 41.667 0.00 0.00 43.88 4.26
471 472 3.439129 ACAAAAATAGGGAACTGTAGCGC 59.561 43.478 0.00 0.00 43.88 5.92
472 473 3.343941 AAAATAGGGAACTGTAGCGCA 57.656 42.857 11.47 0.00 43.88 6.09
473 474 3.343941 AAATAGGGAACTGTAGCGCAA 57.656 42.857 11.47 0.00 43.88 4.85
474 475 2.311124 ATAGGGAACTGTAGCGCAAC 57.689 50.000 11.47 0.00 43.88 4.17
475 476 0.970640 TAGGGAACTGTAGCGCAACA 59.029 50.000 11.47 0.00 43.88 3.33
476 477 0.602905 AGGGAACTGTAGCGCAACAC 60.603 55.000 11.47 4.85 41.13 3.32
477 478 0.882927 GGGAACTGTAGCGCAACACA 60.883 55.000 11.47 9.84 0.00 3.72
478 479 1.156736 GGAACTGTAGCGCAACACAT 58.843 50.000 11.47 0.00 0.00 3.21
479 480 1.128692 GGAACTGTAGCGCAACACATC 59.871 52.381 11.47 6.06 0.00 3.06
480 481 1.798223 GAACTGTAGCGCAACACATCA 59.202 47.619 11.47 0.00 0.00 3.07
481 482 1.432514 ACTGTAGCGCAACACATCAG 58.567 50.000 11.47 9.25 0.00 2.90
482 483 0.095935 CTGTAGCGCAACACATCAGC 59.904 55.000 11.47 0.00 0.00 4.26
483 484 1.298157 TGTAGCGCAACACATCAGCC 61.298 55.000 11.47 0.00 0.00 4.85
484 485 1.021390 GTAGCGCAACACATCAGCCT 61.021 55.000 11.47 0.00 0.00 4.58
485 486 1.020861 TAGCGCAACACATCAGCCTG 61.021 55.000 11.47 0.00 0.00 4.85
486 487 2.620112 GCGCAACACATCAGCCTGT 61.620 57.895 0.30 0.00 0.00 4.00
487 488 1.298157 GCGCAACACATCAGCCTGTA 61.298 55.000 0.30 0.00 0.00 2.74
488 489 0.723414 CGCAACACATCAGCCTGTAG 59.277 55.000 0.00 0.00 0.00 2.74
489 490 1.672737 CGCAACACATCAGCCTGTAGA 60.673 52.381 0.00 0.00 0.00 2.59
490 491 2.636830 GCAACACATCAGCCTGTAGAT 58.363 47.619 0.00 0.00 0.00 1.98
491 492 3.012518 GCAACACATCAGCCTGTAGATT 58.987 45.455 0.00 0.00 0.00 2.40
492 493 3.441572 GCAACACATCAGCCTGTAGATTT 59.558 43.478 0.00 0.00 0.00 2.17
493 494 4.082571 GCAACACATCAGCCTGTAGATTTT 60.083 41.667 0.00 0.00 0.00 1.82
494 495 5.565439 GCAACACATCAGCCTGTAGATTTTT 60.565 40.000 0.00 0.00 0.00 1.94
512 513 2.627863 TTTCCGTTGCATTCAATCCG 57.372 45.000 0.00 0.00 34.29 4.18
513 514 1.529226 TTCCGTTGCATTCAATCCGT 58.471 45.000 0.00 0.00 34.29 4.69
514 515 2.388310 TCCGTTGCATTCAATCCGTA 57.612 45.000 0.00 0.00 34.29 4.02
515 516 2.701107 TCCGTTGCATTCAATCCGTAA 58.299 42.857 0.00 0.00 34.29 3.18
516 517 2.675844 TCCGTTGCATTCAATCCGTAAG 59.324 45.455 0.00 0.00 34.29 2.34
517 518 2.418628 CCGTTGCATTCAATCCGTAAGT 59.581 45.455 0.00 0.00 34.29 2.24
518 519 3.416277 CGTTGCATTCAATCCGTAAGTG 58.584 45.455 0.00 0.00 34.29 3.16
519 520 3.120338 CGTTGCATTCAATCCGTAAGTGT 60.120 43.478 0.00 0.00 34.29 3.55
520 521 4.092237 CGTTGCATTCAATCCGTAAGTGTA 59.908 41.667 0.00 0.00 34.29 2.90
521 522 5.560148 GTTGCATTCAATCCGTAAGTGTAG 58.440 41.667 0.00 0.00 34.29 2.74
522 523 4.827692 TGCATTCAATCCGTAAGTGTAGT 58.172 39.130 0.00 0.00 0.00 2.73
523 524 5.968254 TGCATTCAATCCGTAAGTGTAGTA 58.032 37.500 0.00 0.00 0.00 1.82
524 525 6.578944 TGCATTCAATCCGTAAGTGTAGTAT 58.421 36.000 0.00 0.00 0.00 2.12
525 526 7.045416 TGCATTCAATCCGTAAGTGTAGTATT 58.955 34.615 0.00 0.00 0.00 1.89
526 527 8.198778 TGCATTCAATCCGTAAGTGTAGTATTA 58.801 33.333 0.00 0.00 0.00 0.98
527 528 9.204570 GCATTCAATCCGTAAGTGTAGTATTAT 57.795 33.333 0.00 0.00 0.00 1.28
530 531 9.537192 TTCAATCCGTAAGTGTAGTATTATTGG 57.463 33.333 0.00 0.00 0.00 3.16
531 532 8.698210 TCAATCCGTAAGTGTAGTATTATTGGT 58.302 33.333 0.00 0.00 0.00 3.67
532 533 9.321562 CAATCCGTAAGTGTAGTATTATTGGTT 57.678 33.333 0.00 0.00 0.00 3.67
533 534 9.895138 AATCCGTAAGTGTAGTATTATTGGTTT 57.105 29.630 0.00 0.00 0.00 3.27
534 535 9.895138 ATCCGTAAGTGTAGTATTATTGGTTTT 57.105 29.630 0.00 0.00 0.00 2.43
535 536 9.153721 TCCGTAAGTGTAGTATTATTGGTTTTG 57.846 33.333 0.00 0.00 0.00 2.44
536 537 9.153721 CCGTAAGTGTAGTATTATTGGTTTTGA 57.846 33.333 0.00 0.00 0.00 2.69
537 538 9.962759 CGTAAGTGTAGTATTATTGGTTTTGAC 57.037 33.333 0.00 0.00 0.00 3.18
561 562 2.045536 GGCCAACTGCAGAGGAGG 60.046 66.667 26.66 19.33 43.89 4.30
585 590 7.941238 AGGTCCTGATTTATCCAAGTGAATATG 59.059 37.037 0.00 0.00 0.00 1.78
622 627 2.030027 ACCTGACAGAGGATCAACCA 57.970 50.000 3.32 0.00 46.33 3.67
649 667 2.159653 GCACCACTATTCAACTGAAGCG 60.160 50.000 0.00 0.00 37.48 4.68
654 672 3.369147 CACTATTCAACTGAAGCGGACAG 59.631 47.826 0.00 0.00 37.48 3.51
930 956 2.126580 CGACGAGACCACCGAACC 60.127 66.667 0.00 0.00 0.00 3.62
1011 1037 4.451150 TCGACCATGGCGAGCACC 62.451 66.667 22.05 0.42 33.33 5.01
1012 1038 4.758251 CGACCATGGCGAGCACCA 62.758 66.667 19.72 0.00 45.82 4.17
1013 1039 2.821366 GACCATGGCGAGCACCAG 60.821 66.667 13.04 0.00 44.71 4.00
1143 1172 1.965754 GCTTGCTCCCGATGTCTCCT 61.966 60.000 0.00 0.00 0.00 3.69
1156 1185 2.266055 CTCCTGCGGAGGGTGAAC 59.734 66.667 24.01 0.00 45.43 3.18
1215 1262 2.815647 GAGGAGGAGGCGTTTGCG 60.816 66.667 0.00 0.00 44.10 4.85
1266 1313 3.599792 TTCGTCTTCGTCGTCCGGC 62.600 63.158 0.00 0.00 38.33 6.13
1270 1317 2.885644 CTTCGTCGTCCGGCATGG 60.886 66.667 0.00 0.00 37.11 3.66
1573 1620 2.959372 CGCAGGTCTACGTCACCA 59.041 61.111 16.82 0.00 36.23 4.17
1650 1697 1.179152 TCGCCATCGAAGAGGTGTTA 58.821 50.000 13.08 0.00 43.63 2.41
1663 1710 2.952310 GAGGTGTTAAGGATGGAATGGC 59.048 50.000 0.00 0.00 0.00 4.40
1664 1711 2.311542 AGGTGTTAAGGATGGAATGGCA 59.688 45.455 0.00 0.00 0.00 4.92
1686 1733 2.520904 GCTCGACCAGAAGATGCGC 61.521 63.158 0.00 0.00 0.00 6.09
1986 2033 4.500116 GCCGAGGTCTCAGCCGTC 62.500 72.222 0.00 0.00 0.00 4.79
2091 2138 2.764128 GGCGGAGAGATCCACCCA 60.764 66.667 0.00 0.00 0.00 4.51
2472 2519 2.094659 GTCGTGGATCACCGTGCTG 61.095 63.158 0.00 0.00 39.42 4.41
2661 2708 1.580845 CGTACCGGTCGTTCCTGTCT 61.581 60.000 12.40 0.00 35.35 3.41
2848 2897 4.313282 TCTGACTGCAACATTCTTCAGAG 58.687 43.478 0.00 0.00 35.65 3.35
2849 2898 3.405831 TGACTGCAACATTCTTCAGAGG 58.594 45.455 0.00 0.00 0.00 3.69
2850 2899 2.157738 ACTGCAACATTCTTCAGAGGC 58.842 47.619 0.00 0.00 0.00 4.70
2851 2900 2.156917 CTGCAACATTCTTCAGAGGCA 58.843 47.619 0.00 0.00 0.00 4.75
2852 2901 2.156917 TGCAACATTCTTCAGAGGCAG 58.843 47.619 0.00 0.00 0.00 4.85
2853 2902 1.135460 GCAACATTCTTCAGAGGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
2854 2903 2.156917 CAACATTCTTCAGAGGCAGCA 58.843 47.619 0.00 0.00 0.00 4.41
2855 2904 2.555325 CAACATTCTTCAGAGGCAGCAA 59.445 45.455 0.00 0.00 0.00 3.91
2856 2905 2.157738 ACATTCTTCAGAGGCAGCAAC 58.842 47.619 0.00 0.00 0.00 4.17
2857 2906 2.156917 CATTCTTCAGAGGCAGCAACA 58.843 47.619 0.00 0.00 0.00 3.33
2858 2907 2.574006 TTCTTCAGAGGCAGCAACAT 57.426 45.000 0.00 0.00 0.00 2.71
2859 2908 2.574006 TCTTCAGAGGCAGCAACATT 57.426 45.000 0.00 0.00 0.00 2.71
2860 2909 2.430465 TCTTCAGAGGCAGCAACATTC 58.570 47.619 0.00 0.00 0.00 2.67
2861 2910 2.039480 TCTTCAGAGGCAGCAACATTCT 59.961 45.455 0.00 0.00 0.00 2.40
2862 2911 2.574006 TCAGAGGCAGCAACATTCTT 57.426 45.000 0.00 0.00 0.00 2.52
2863 2912 2.430465 TCAGAGGCAGCAACATTCTTC 58.570 47.619 0.00 0.00 0.00 2.87
2864 2913 2.156917 CAGAGGCAGCAACATTCTTCA 58.843 47.619 0.00 0.00 0.00 3.02
2865 2914 2.161808 CAGAGGCAGCAACATTCTTCAG 59.838 50.000 0.00 0.00 0.00 3.02
2866 2915 2.039480 AGAGGCAGCAACATTCTTCAGA 59.961 45.455 0.00 0.00 0.00 3.27
2957 3006 0.994263 CGATAACAACCGACCGTTCC 59.006 55.000 0.00 0.00 29.93 3.62
3002 3061 0.111253 GGATGGAAGGGGCATCGATT 59.889 55.000 0.00 0.00 0.00 3.34
3162 3276 1.712401 CACGACAAAATTGCCATGGG 58.288 50.000 15.13 0.00 0.00 4.00
3281 3419 6.714810 ACAGTACAAAAAGATGCCATCACTAA 59.285 34.615 7.56 0.00 0.00 2.24
3336 3534 8.739039 CATGAAGTGATATGGTGGAAAAAGTTA 58.261 33.333 0.00 0.00 0.00 2.24
3342 3551 8.616076 GTGATATGGTGGAAAAAGTTATCTCTG 58.384 37.037 0.00 0.00 0.00 3.35
3667 3912 5.277825 TGTTTTTGAACATCTTAGGTTGCG 58.722 37.500 0.00 0.00 0.00 4.85
3668 3913 4.497473 TTTTGAACATCTTAGGTTGCGG 57.503 40.909 0.00 0.00 0.00 5.69
3669 3914 2.107950 TGAACATCTTAGGTTGCGGG 57.892 50.000 0.00 0.00 0.00 6.13
3693 3970 6.426328 GGTTGCCATGTTTTTGAACATCATTA 59.574 34.615 2.02 0.00 41.12 1.90
3694 3971 7.290118 GTTGCCATGTTTTTGAACATCATTAC 58.710 34.615 2.02 0.00 41.12 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.299867 AGCCCCGTAAGAGTTTTTCGTA 59.700 45.455 0.00 0.00 43.02 3.43
2 3 1.463444 CAGCCCCGTAAGAGTTTTTCG 59.537 52.381 0.00 0.00 43.02 3.46
5 6 1.003233 CCTCAGCCCCGTAAGAGTTTT 59.997 52.381 0.00 0.00 43.02 2.43
6 7 0.613777 CCTCAGCCCCGTAAGAGTTT 59.386 55.000 0.00 0.00 43.02 2.66
7 8 0.544595 ACCTCAGCCCCGTAAGAGTT 60.545 55.000 0.00 0.00 43.02 3.01
8 9 1.078710 ACCTCAGCCCCGTAAGAGT 59.921 57.895 0.00 0.00 43.02 3.24
9 10 1.517832 CACCTCAGCCCCGTAAGAG 59.482 63.158 0.00 0.00 43.02 2.85
10 11 1.987855 CCACCTCAGCCCCGTAAGA 60.988 63.158 0.00 0.00 43.02 2.10
11 12 1.961180 CTCCACCTCAGCCCCGTAAG 61.961 65.000 0.00 0.00 0.00 2.34
12 13 1.987855 CTCCACCTCAGCCCCGTAA 60.988 63.158 0.00 0.00 0.00 3.18
13 14 2.363795 CTCCACCTCAGCCCCGTA 60.364 66.667 0.00 0.00 0.00 4.02
14 15 4.316823 TCTCCACCTCAGCCCCGT 62.317 66.667 0.00 0.00 0.00 5.28
15 16 3.775654 GTCTCCACCTCAGCCCCG 61.776 72.222 0.00 0.00 0.00 5.73
16 17 3.775654 CGTCTCCACCTCAGCCCC 61.776 72.222 0.00 0.00 0.00 5.80
17 18 4.459089 GCGTCTCCACCTCAGCCC 62.459 72.222 0.00 0.00 0.00 5.19
18 19 3.655810 CTGCGTCTCCACCTCAGCC 62.656 68.421 0.00 0.00 0.00 4.85
19 20 2.125753 CTGCGTCTCCACCTCAGC 60.126 66.667 0.00 0.00 0.00 4.26
20 21 1.536073 TTCCTGCGTCTCCACCTCAG 61.536 60.000 0.00 0.00 0.00 3.35
21 22 0.904865 ATTCCTGCGTCTCCACCTCA 60.905 55.000 0.00 0.00 0.00 3.86
22 23 0.250513 AATTCCTGCGTCTCCACCTC 59.749 55.000 0.00 0.00 0.00 3.85
23 24 1.568504 TAATTCCTGCGTCTCCACCT 58.431 50.000 0.00 0.00 0.00 4.00
24 25 2.007608 GTTAATTCCTGCGTCTCCACC 58.992 52.381 0.00 0.00 0.00 4.61
25 26 2.007608 GGTTAATTCCTGCGTCTCCAC 58.992 52.381 0.00 0.00 0.00 4.02
26 27 1.626321 TGGTTAATTCCTGCGTCTCCA 59.374 47.619 0.00 0.00 0.00 3.86
27 28 2.396590 TGGTTAATTCCTGCGTCTCC 57.603 50.000 0.00 0.00 0.00 3.71
28 29 2.614057 CCATGGTTAATTCCTGCGTCTC 59.386 50.000 2.57 0.00 0.00 3.36
29 30 2.643551 CCATGGTTAATTCCTGCGTCT 58.356 47.619 2.57 0.00 0.00 4.18
30 31 1.676006 CCCATGGTTAATTCCTGCGTC 59.324 52.381 11.73 0.00 0.00 5.19
31 32 1.762708 CCCATGGTTAATTCCTGCGT 58.237 50.000 11.73 0.00 0.00 5.24
32 33 0.385390 GCCCATGGTTAATTCCTGCG 59.615 55.000 11.73 0.00 0.00 5.18
33 34 0.752658 GGCCCATGGTTAATTCCTGC 59.247 55.000 11.73 2.99 0.00 4.85
34 35 1.032014 CGGCCCATGGTTAATTCCTG 58.968 55.000 11.73 0.00 0.00 3.86
35 36 0.106217 CCGGCCCATGGTTAATTCCT 60.106 55.000 11.73 0.00 0.00 3.36
36 37 0.396556 ACCGGCCCATGGTTAATTCC 60.397 55.000 11.73 1.01 35.82 3.01
37 38 1.029681 GACCGGCCCATGGTTAATTC 58.970 55.000 11.73 0.00 40.63 2.17
38 39 0.396556 GGACCGGCCCATGGTTAATT 60.397 55.000 11.73 0.00 40.63 1.40
39 40 1.229076 GGACCGGCCCATGGTTAAT 59.771 57.895 11.73 0.00 40.63 1.40
40 41 2.678470 GGACCGGCCCATGGTTAA 59.322 61.111 11.73 0.00 40.63 2.01
54 55 1.824852 CCTGCATTTAACCTTGGGGAC 59.175 52.381 0.00 0.00 36.25 4.46
55 56 1.272985 CCCTGCATTTAACCTTGGGGA 60.273 52.381 0.00 0.00 34.94 4.81
56 57 1.194218 CCCTGCATTTAACCTTGGGG 58.806 55.000 0.00 0.00 38.88 4.96
57 58 1.194218 CCCCTGCATTTAACCTTGGG 58.806 55.000 0.00 0.00 0.00 4.12
58 59 1.824852 GTCCCCTGCATTTAACCTTGG 59.175 52.381 0.00 0.00 0.00 3.61
59 60 2.493278 CAGTCCCCTGCATTTAACCTTG 59.507 50.000 0.00 0.00 0.00 3.61
60 61 2.378547 TCAGTCCCCTGCATTTAACCTT 59.621 45.455 0.00 0.00 38.66 3.50
61 62 1.992557 TCAGTCCCCTGCATTTAACCT 59.007 47.619 0.00 0.00 38.66 3.50
62 63 2.507407 TCAGTCCCCTGCATTTAACC 57.493 50.000 0.00 0.00 38.66 2.85
63 64 4.016444 TCAATCAGTCCCCTGCATTTAAC 58.984 43.478 0.00 0.00 38.66 2.01
64 65 4.314522 TCAATCAGTCCCCTGCATTTAA 57.685 40.909 0.00 0.00 38.66 1.52
65 66 4.524802 ATCAATCAGTCCCCTGCATTTA 57.475 40.909 0.00 0.00 38.66 1.40
66 67 2.905415 TCAATCAGTCCCCTGCATTT 57.095 45.000 0.00 0.00 38.66 2.32
67 68 3.393426 AATCAATCAGTCCCCTGCATT 57.607 42.857 0.00 0.00 38.66 3.56
68 69 4.736611 ATAATCAATCAGTCCCCTGCAT 57.263 40.909 0.00 0.00 38.66 3.96
69 70 5.848286 ATATAATCAATCAGTCCCCTGCA 57.152 39.130 0.00 0.00 38.66 4.41
70 71 5.416952 CCAATATAATCAATCAGTCCCCTGC 59.583 44.000 0.00 0.00 38.66 4.85
71 72 5.416952 GCCAATATAATCAATCAGTCCCCTG 59.583 44.000 0.00 0.00 40.25 4.45
72 73 5.074929 TGCCAATATAATCAATCAGTCCCCT 59.925 40.000 0.00 0.00 0.00 4.79
73 74 5.183904 GTGCCAATATAATCAATCAGTCCCC 59.816 44.000 0.00 0.00 0.00 4.81
74 75 5.769662 TGTGCCAATATAATCAATCAGTCCC 59.230 40.000 0.00 0.00 0.00 4.46
75 76 6.566564 CGTGTGCCAATATAATCAATCAGTCC 60.567 42.308 0.00 0.00 0.00 3.85
76 77 6.017934 ACGTGTGCCAATATAATCAATCAGTC 60.018 38.462 0.00 0.00 0.00 3.51
77 78 5.822519 ACGTGTGCCAATATAATCAATCAGT 59.177 36.000 0.00 0.00 0.00 3.41
78 79 6.203530 AGACGTGTGCCAATATAATCAATCAG 59.796 38.462 0.00 0.00 0.00 2.90
79 80 6.054941 AGACGTGTGCCAATATAATCAATCA 58.945 36.000 0.00 0.00 0.00 2.57
80 81 6.545504 AGACGTGTGCCAATATAATCAATC 57.454 37.500 0.00 0.00 0.00 2.67
81 82 6.017109 GGAAGACGTGTGCCAATATAATCAAT 60.017 38.462 4.43 0.00 0.00 2.57
82 83 5.295787 GGAAGACGTGTGCCAATATAATCAA 59.704 40.000 4.43 0.00 0.00 2.57
83 84 4.814234 GGAAGACGTGTGCCAATATAATCA 59.186 41.667 4.43 0.00 0.00 2.57
84 85 5.050091 CAGGAAGACGTGTGCCAATATAATC 60.050 44.000 13.17 0.00 0.00 1.75
85 86 4.816385 CAGGAAGACGTGTGCCAATATAAT 59.184 41.667 13.17 0.00 0.00 1.28
86 87 4.188462 CAGGAAGACGTGTGCCAATATAA 58.812 43.478 13.17 0.00 0.00 0.98
87 88 3.196901 ACAGGAAGACGTGTGCCAATATA 59.803 43.478 13.17 0.00 42.35 0.86
88 89 2.027192 ACAGGAAGACGTGTGCCAATAT 60.027 45.455 13.17 0.00 42.35 1.28
89 90 1.346395 ACAGGAAGACGTGTGCCAATA 59.654 47.619 13.17 0.00 42.35 1.90
90 91 0.108585 ACAGGAAGACGTGTGCCAAT 59.891 50.000 13.17 0.00 42.35 3.16
91 92 0.753867 TACAGGAAGACGTGTGCCAA 59.246 50.000 13.17 0.00 43.48 4.52
92 93 0.753867 TTACAGGAAGACGTGTGCCA 59.246 50.000 13.17 0.00 43.48 4.92
93 94 1.270147 ACTTACAGGAAGACGTGTGCC 60.270 52.381 0.01 0.01 43.48 5.01
94 95 2.150397 ACTTACAGGAAGACGTGTGC 57.850 50.000 0.00 0.00 43.48 4.57
95 96 3.057734 GGAACTTACAGGAAGACGTGTG 58.942 50.000 0.00 0.00 43.48 3.82
96 97 2.963782 AGGAACTTACAGGAAGACGTGT 59.036 45.455 0.00 0.00 45.19 4.49
97 98 3.662247 AGGAACTTACAGGAAGACGTG 57.338 47.619 0.00 0.00 38.65 4.49
112 113 1.003718 CTGGGGTCACGGAAGGAAC 60.004 63.158 0.00 0.00 0.00 3.62
113 114 2.890766 GCTGGGGTCACGGAAGGAA 61.891 63.158 0.00 0.00 0.00 3.36
114 115 3.319198 GCTGGGGTCACGGAAGGA 61.319 66.667 0.00 0.00 0.00 3.36
115 116 4.410400 GGCTGGGGTCACGGAAGG 62.410 72.222 0.00 0.00 0.00 3.46
116 117 4.410400 GGGCTGGGGTCACGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
120 121 2.608970 CTTATGGGGCTGGGGTCACG 62.609 65.000 0.00 0.00 0.00 4.35
121 122 1.227383 CTTATGGGGCTGGGGTCAC 59.773 63.158 0.00 0.00 0.00 3.67
122 123 0.045008 TACTTATGGGGCTGGGGTCA 59.955 55.000 0.00 0.00 0.00 4.02
123 124 0.765510 CTACTTATGGGGCTGGGGTC 59.234 60.000 0.00 0.00 0.00 4.46
124 125 0.045778 ACTACTTATGGGGCTGGGGT 59.954 55.000 0.00 0.00 0.00 4.95
125 126 0.765510 GACTACTTATGGGGCTGGGG 59.234 60.000 0.00 0.00 0.00 4.96
126 127 0.765510 GGACTACTTATGGGGCTGGG 59.234 60.000 0.00 0.00 0.00 4.45
127 128 1.417890 CAGGACTACTTATGGGGCTGG 59.582 57.143 0.00 0.00 0.00 4.85
128 129 1.417890 CCAGGACTACTTATGGGGCTG 59.582 57.143 0.00 0.00 0.00 4.85
129 130 1.807814 CCAGGACTACTTATGGGGCT 58.192 55.000 0.00 0.00 0.00 5.19
130 131 0.108774 GCCAGGACTACTTATGGGGC 59.891 60.000 0.00 0.00 33.23 5.80
131 132 0.765510 GGCCAGGACTACTTATGGGG 59.234 60.000 0.00 0.00 33.23 4.96
132 133 1.507140 TGGCCAGGACTACTTATGGG 58.493 55.000 0.00 0.00 33.23 4.00
133 134 2.975489 AGATGGCCAGGACTACTTATGG 59.025 50.000 13.05 0.00 35.84 2.74
134 135 3.643320 TGAGATGGCCAGGACTACTTATG 59.357 47.826 13.05 0.00 0.00 1.90
135 136 3.900601 CTGAGATGGCCAGGACTACTTAT 59.099 47.826 13.05 0.00 0.00 1.73
136 137 3.300388 CTGAGATGGCCAGGACTACTTA 58.700 50.000 13.05 0.00 0.00 2.24
137 138 2.114616 CTGAGATGGCCAGGACTACTT 58.885 52.381 13.05 0.00 0.00 2.24
138 139 1.786937 CTGAGATGGCCAGGACTACT 58.213 55.000 13.05 3.29 0.00 2.57
199 200 0.106419 AGGGTCAAGGCCGACAAAAA 60.106 50.000 12.20 0.00 37.66 1.94
200 201 0.821711 CAGGGTCAAGGCCGACAAAA 60.822 55.000 12.20 0.00 37.66 2.44
201 202 1.228124 CAGGGTCAAGGCCGACAAA 60.228 57.895 12.20 0.00 37.66 2.83
202 203 2.429930 CAGGGTCAAGGCCGACAA 59.570 61.111 12.20 0.00 37.66 3.18
203 204 4.329545 GCAGGGTCAAGGCCGACA 62.330 66.667 12.20 0.00 37.66 4.35
209 210 4.410400 GGGTCGGCAGGGTCAAGG 62.410 72.222 0.00 0.00 0.00 3.61
210 211 4.760047 CGGGTCGGCAGGGTCAAG 62.760 72.222 0.00 0.00 0.00 3.02
213 214 4.530857 CATCGGGTCGGCAGGGTC 62.531 72.222 0.00 0.00 0.00 4.46
225 226 0.180406 CTCCCAAACCCTACCATCGG 59.820 60.000 0.00 0.00 0.00 4.18
226 227 0.180406 CCTCCCAAACCCTACCATCG 59.820 60.000 0.00 0.00 0.00 3.84
227 228 0.551396 CCCTCCCAAACCCTACCATC 59.449 60.000 0.00 0.00 0.00 3.51
228 229 1.580994 GCCCTCCCAAACCCTACCAT 61.581 60.000 0.00 0.00 0.00 3.55
229 230 2.235761 GCCCTCCCAAACCCTACCA 61.236 63.158 0.00 0.00 0.00 3.25
230 231 2.681591 GCCCTCCCAAACCCTACC 59.318 66.667 0.00 0.00 0.00 3.18
231 232 1.929088 AGGCCCTCCCAAACCCTAC 60.929 63.158 0.00 0.00 35.39 3.18
232 233 1.928567 CAGGCCCTCCCAAACCCTA 60.929 63.158 0.00 0.00 35.39 3.53
233 234 3.268032 CAGGCCCTCCCAAACCCT 61.268 66.667 0.00 0.00 35.39 4.34
234 235 4.382541 CCAGGCCCTCCCAAACCC 62.383 72.222 0.00 0.00 35.39 4.11
235 236 4.382541 CCCAGGCCCTCCCAAACC 62.383 72.222 0.00 0.00 35.39 3.27
275 276 2.526628 TTGGGCCGGGCCTAAAAA 59.473 55.556 42.77 28.32 45.79 1.94
309 310 1.371467 TGGGTATATCTGGCCATGGG 58.629 55.000 15.13 0.00 0.00 4.00
310 311 4.228210 ACTTATGGGTATATCTGGCCATGG 59.772 45.833 5.51 7.63 0.00 3.66
311 312 5.188434 CACTTATGGGTATATCTGGCCATG 58.812 45.833 5.51 0.00 0.00 3.66
312 313 4.852118 ACACTTATGGGTATATCTGGCCAT 59.148 41.667 5.51 0.00 0.00 4.40
313 314 4.239495 ACACTTATGGGTATATCTGGCCA 58.761 43.478 4.71 4.71 0.00 5.36
314 315 4.532521 AGACACTTATGGGTATATCTGGCC 59.467 45.833 0.00 0.00 0.00 5.36
315 316 5.246203 TGAGACACTTATGGGTATATCTGGC 59.754 44.000 0.00 0.00 0.00 4.85
316 317 6.495181 ACTGAGACACTTATGGGTATATCTGG 59.505 42.308 0.00 0.00 0.00 3.86
317 318 7.531857 ACTGAGACACTTATGGGTATATCTG 57.468 40.000 0.00 0.00 0.00 2.90
318 319 8.554490 AAACTGAGACACTTATGGGTATATCT 57.446 34.615 0.00 0.00 0.00 1.98
319 320 9.262358 GAAAACTGAGACACTTATGGGTATATC 57.738 37.037 0.00 0.00 0.00 1.63
320 321 7.926555 CGAAAACTGAGACACTTATGGGTATAT 59.073 37.037 0.00 0.00 0.00 0.86
321 322 7.262772 CGAAAACTGAGACACTTATGGGTATA 58.737 38.462 0.00 0.00 0.00 1.47
322 323 6.106673 CGAAAACTGAGACACTTATGGGTAT 58.893 40.000 0.00 0.00 0.00 2.73
323 324 5.475719 CGAAAACTGAGACACTTATGGGTA 58.524 41.667 0.00 0.00 0.00 3.69
324 325 4.315803 CGAAAACTGAGACACTTATGGGT 58.684 43.478 0.00 0.00 0.00 4.51
325 326 3.684788 CCGAAAACTGAGACACTTATGGG 59.315 47.826 0.00 0.00 0.00 4.00
326 327 3.684788 CCCGAAAACTGAGACACTTATGG 59.315 47.826 0.00 0.00 0.00 2.74
327 328 3.125316 GCCCGAAAACTGAGACACTTATG 59.875 47.826 0.00 0.00 0.00 1.90
328 329 3.244422 TGCCCGAAAACTGAGACACTTAT 60.244 43.478 0.00 0.00 0.00 1.73
329 330 2.103432 TGCCCGAAAACTGAGACACTTA 59.897 45.455 0.00 0.00 0.00 2.24
330 331 1.134220 TGCCCGAAAACTGAGACACTT 60.134 47.619 0.00 0.00 0.00 3.16
331 332 0.468226 TGCCCGAAAACTGAGACACT 59.532 50.000 0.00 0.00 0.00 3.55
332 333 1.305201 TTGCCCGAAAACTGAGACAC 58.695 50.000 0.00 0.00 0.00 3.67
333 334 2.270352 ATTGCCCGAAAACTGAGACA 57.730 45.000 0.00 0.00 0.00 3.41
334 335 4.662145 CATTATTGCCCGAAAACTGAGAC 58.338 43.478 0.00 0.00 0.00 3.36
335 336 3.128589 GCATTATTGCCCGAAAACTGAGA 59.871 43.478 0.00 0.00 43.38 3.27
336 337 3.438360 GCATTATTGCCCGAAAACTGAG 58.562 45.455 0.00 0.00 43.38 3.35
337 338 3.502191 GCATTATTGCCCGAAAACTGA 57.498 42.857 0.00 0.00 43.38 3.41
349 350 8.487970 CAATAGTCCGTAAGTGTAGCATTATTG 58.512 37.037 0.00 0.00 0.00 1.90
350 351 7.170998 GCAATAGTCCGTAAGTGTAGCATTATT 59.829 37.037 0.00 0.00 0.00 1.40
351 352 6.645415 GCAATAGTCCGTAAGTGTAGCATTAT 59.355 38.462 0.00 0.00 0.00 1.28
352 353 5.981315 GCAATAGTCCGTAAGTGTAGCATTA 59.019 40.000 0.00 0.00 0.00 1.90
353 354 4.809426 GCAATAGTCCGTAAGTGTAGCATT 59.191 41.667 0.00 0.00 0.00 3.56
354 355 4.099573 AGCAATAGTCCGTAAGTGTAGCAT 59.900 41.667 0.00 0.00 0.00 3.79
355 356 3.446161 AGCAATAGTCCGTAAGTGTAGCA 59.554 43.478 0.00 0.00 0.00 3.49
356 357 4.043037 AGCAATAGTCCGTAAGTGTAGC 57.957 45.455 0.00 0.00 0.00 3.58
357 358 5.680229 CGTAAGCAATAGTCCGTAAGTGTAG 59.320 44.000 0.00 0.00 0.00 2.74
358 359 5.449041 CCGTAAGCAATAGTCCGTAAGTGTA 60.449 44.000 0.00 0.00 0.00 2.90
359 360 4.418392 CGTAAGCAATAGTCCGTAAGTGT 58.582 43.478 0.00 0.00 0.00 3.55
360 361 3.795101 CCGTAAGCAATAGTCCGTAAGTG 59.205 47.826 0.00 0.00 0.00 3.16
361 362 3.696051 TCCGTAAGCAATAGTCCGTAAGT 59.304 43.478 0.00 0.00 0.00 2.24
362 363 4.297299 TCCGTAAGCAATAGTCCGTAAG 57.703 45.455 0.00 0.00 0.00 2.34
363 364 4.717233 TTCCGTAAGCAATAGTCCGTAA 57.283 40.909 0.00 0.00 0.00 3.18
364 365 4.338964 TCATTCCGTAAGCAATAGTCCGTA 59.661 41.667 0.00 0.00 0.00 4.02
365 366 3.131577 TCATTCCGTAAGCAATAGTCCGT 59.868 43.478 0.00 0.00 0.00 4.69
366 367 3.713288 TCATTCCGTAAGCAATAGTCCG 58.287 45.455 0.00 0.00 0.00 4.79
367 368 4.945246 TCTCATTCCGTAAGCAATAGTCC 58.055 43.478 0.00 0.00 0.00 3.85
368 369 7.148950 CGTAATCTCATTCCGTAAGCAATAGTC 60.149 40.741 0.00 0.00 0.00 2.59
369 370 6.641314 CGTAATCTCATTCCGTAAGCAATAGT 59.359 38.462 0.00 0.00 0.00 2.12
370 371 6.089551 CCGTAATCTCATTCCGTAAGCAATAG 59.910 42.308 0.00 0.00 0.00 1.73
371 372 5.924254 CCGTAATCTCATTCCGTAAGCAATA 59.076 40.000 0.00 0.00 0.00 1.90
372 373 4.750098 CCGTAATCTCATTCCGTAAGCAAT 59.250 41.667 0.00 0.00 0.00 3.56
373 374 4.116961 CCGTAATCTCATTCCGTAAGCAA 58.883 43.478 0.00 0.00 0.00 3.91
374 375 3.382227 TCCGTAATCTCATTCCGTAAGCA 59.618 43.478 0.00 0.00 0.00 3.91
375 376 3.734735 GTCCGTAATCTCATTCCGTAAGC 59.265 47.826 0.00 0.00 0.00 3.09
376 377 4.928601 TGTCCGTAATCTCATTCCGTAAG 58.071 43.478 0.00 0.00 0.00 2.34
377 378 4.987408 TGTCCGTAATCTCATTCCGTAA 57.013 40.909 0.00 0.00 0.00 3.18
378 379 6.208007 ACATATGTCCGTAATCTCATTCCGTA 59.792 38.462 1.41 0.00 0.00 4.02
379 380 5.010719 ACATATGTCCGTAATCTCATTCCGT 59.989 40.000 1.41 0.00 0.00 4.69
380 381 5.346011 CACATATGTCCGTAATCTCATTCCG 59.654 44.000 5.07 0.00 0.00 4.30
381 382 6.366332 GTCACATATGTCCGTAATCTCATTCC 59.634 42.308 5.07 0.00 0.00 3.01
382 383 7.148641 AGTCACATATGTCCGTAATCTCATTC 58.851 38.462 5.07 0.00 0.00 2.67
383 384 7.055667 AGTCACATATGTCCGTAATCTCATT 57.944 36.000 5.07 0.00 0.00 2.57
384 385 6.294787 GGAGTCACATATGTCCGTAATCTCAT 60.295 42.308 5.07 0.00 0.00 2.90
385 386 5.009710 GGAGTCACATATGTCCGTAATCTCA 59.990 44.000 5.07 0.00 0.00 3.27
386 387 5.462405 GGAGTCACATATGTCCGTAATCTC 58.538 45.833 5.07 6.22 0.00 2.75
387 388 4.281182 GGGAGTCACATATGTCCGTAATCT 59.719 45.833 5.07 0.00 0.00 2.40
388 389 4.281182 AGGGAGTCACATATGTCCGTAATC 59.719 45.833 5.07 1.13 0.00 1.75
389 390 4.223953 AGGGAGTCACATATGTCCGTAAT 58.776 43.478 5.07 0.00 0.00 1.89
390 391 3.638860 AGGGAGTCACATATGTCCGTAA 58.361 45.455 5.07 0.00 0.00 3.18
391 392 3.308035 AGGGAGTCACATATGTCCGTA 57.692 47.619 5.07 0.00 0.00 4.02
392 393 2.160721 AGGGAGTCACATATGTCCGT 57.839 50.000 5.07 3.04 0.00 4.69
393 394 3.198068 CAAAGGGAGTCACATATGTCCG 58.802 50.000 5.07 0.00 0.00 4.79
394 395 3.054361 ACCAAAGGGAGTCACATATGTCC 60.054 47.826 5.07 3.99 38.05 4.02
395 396 4.222124 ACCAAAGGGAGTCACATATGTC 57.778 45.455 5.07 0.00 38.05 3.06
396 397 4.657814 AACCAAAGGGAGTCACATATGT 57.342 40.909 1.41 1.41 38.05 2.29
397 398 4.576463 GCTAACCAAAGGGAGTCACATATG 59.424 45.833 0.00 0.00 38.05 1.78
398 399 4.385310 GGCTAACCAAAGGGAGTCACATAT 60.385 45.833 0.00 0.00 38.05 1.78
399 400 3.054655 GGCTAACCAAAGGGAGTCACATA 60.055 47.826 0.00 0.00 38.05 2.29
400 401 2.290960 GGCTAACCAAAGGGAGTCACAT 60.291 50.000 0.00 0.00 38.05 3.21
401 402 1.073284 GGCTAACCAAAGGGAGTCACA 59.927 52.381 0.00 0.00 38.05 3.58
402 403 1.613520 GGGCTAACCAAAGGGAGTCAC 60.614 57.143 0.00 0.00 39.85 3.67
403 404 0.696501 GGGCTAACCAAAGGGAGTCA 59.303 55.000 0.00 0.00 39.85 3.41
404 405 0.034380 GGGGCTAACCAAAGGGAGTC 60.034 60.000 0.00 0.00 42.91 3.36
405 406 0.774491 TGGGGCTAACCAAAGGGAGT 60.774 55.000 0.00 0.00 42.91 3.85
406 407 0.631212 ATGGGGCTAACCAAAGGGAG 59.369 55.000 0.00 0.00 45.13 4.30
407 408 0.334676 CATGGGGCTAACCAAAGGGA 59.665 55.000 0.00 0.00 45.13 4.20
408 409 0.041090 ACATGGGGCTAACCAAAGGG 59.959 55.000 0.00 0.00 45.13 3.95
409 410 2.818751 TACATGGGGCTAACCAAAGG 57.181 50.000 0.00 0.00 45.13 3.11
410 411 4.709397 TGATTTACATGGGGCTAACCAAAG 59.291 41.667 0.00 0.00 45.13 2.77
411 412 4.678256 TGATTTACATGGGGCTAACCAAA 58.322 39.130 0.00 0.00 45.13 3.28
412 413 4.277476 CTGATTTACATGGGGCTAACCAA 58.723 43.478 0.00 0.00 45.13 3.67
413 414 3.372566 CCTGATTTACATGGGGCTAACCA 60.373 47.826 0.00 0.00 46.24 3.67
414 415 3.222603 CCTGATTTACATGGGGCTAACC 58.777 50.000 0.00 0.00 39.11 2.85
415 416 3.222603 CCCTGATTTACATGGGGCTAAC 58.777 50.000 0.00 0.00 35.09 2.34
416 417 2.856231 ACCCTGATTTACATGGGGCTAA 59.144 45.455 0.00 0.00 39.54 3.09
417 418 2.174639 CACCCTGATTTACATGGGGCTA 59.825 50.000 0.00 0.00 39.54 3.93
418 419 1.063717 CACCCTGATTTACATGGGGCT 60.064 52.381 0.00 0.00 39.54 5.19
419 420 1.402787 CACCCTGATTTACATGGGGC 58.597 55.000 0.00 0.00 39.54 5.80
420 421 1.411501 CCCACCCTGATTTACATGGGG 60.412 57.143 0.00 0.00 40.66 4.96
421 422 1.411501 CCCCACCCTGATTTACATGGG 60.412 57.143 0.00 0.00 42.74 4.00
422 423 2.028996 GCCCCACCCTGATTTACATGG 61.029 57.143 0.00 0.00 39.61 3.66
423 424 1.402787 GCCCCACCCTGATTTACATG 58.597 55.000 0.00 0.00 0.00 3.21
424 425 0.261696 GGCCCCACCCTGATTTACAT 59.738 55.000 0.00 0.00 0.00 2.29
425 426 0.849094 AGGCCCCACCCTGATTTACA 60.849 55.000 0.00 0.00 40.58 2.41
426 427 2.007576 AGGCCCCACCCTGATTTAC 58.992 57.895 0.00 0.00 40.58 2.01
427 428 4.620673 AGGCCCCACCCTGATTTA 57.379 55.556 0.00 0.00 40.58 1.40
435 436 3.808218 TTTGTCTGCAGGCCCCACC 62.808 63.158 17.28 0.00 39.61 4.61
436 437 1.398958 TTTTTGTCTGCAGGCCCCAC 61.399 55.000 17.28 5.64 0.00 4.61
437 438 0.471591 ATTTTTGTCTGCAGGCCCCA 60.472 50.000 17.28 4.04 0.00 4.96
438 439 1.478105 CTATTTTTGTCTGCAGGCCCC 59.522 52.381 17.28 1.23 0.00 5.80
439 440 1.478105 CCTATTTTTGTCTGCAGGCCC 59.522 52.381 17.28 3.89 0.00 5.80
440 441 1.478105 CCCTATTTTTGTCTGCAGGCC 59.522 52.381 17.28 6.61 0.00 5.19
441 442 2.446435 TCCCTATTTTTGTCTGCAGGC 58.554 47.619 12.53 12.53 0.00 4.85
442 443 4.082125 AGTTCCCTATTTTTGTCTGCAGG 58.918 43.478 15.13 0.00 0.00 4.85
443 444 4.520492 ACAGTTCCCTATTTTTGTCTGCAG 59.480 41.667 7.63 7.63 0.00 4.41
444 445 4.469657 ACAGTTCCCTATTTTTGTCTGCA 58.530 39.130 0.00 0.00 0.00 4.41
445 446 5.392057 GCTACAGTTCCCTATTTTTGTCTGC 60.392 44.000 0.00 0.00 0.00 4.26
446 447 5.163854 CGCTACAGTTCCCTATTTTTGTCTG 60.164 44.000 0.00 0.00 0.00 3.51
447 448 4.935808 CGCTACAGTTCCCTATTTTTGTCT 59.064 41.667 0.00 0.00 0.00 3.41
448 449 4.436986 GCGCTACAGTTCCCTATTTTTGTC 60.437 45.833 0.00 0.00 0.00 3.18
449 450 3.439129 GCGCTACAGTTCCCTATTTTTGT 59.561 43.478 0.00 0.00 0.00 2.83
450 451 3.438781 TGCGCTACAGTTCCCTATTTTTG 59.561 43.478 9.73 0.00 0.00 2.44
451 452 3.681593 TGCGCTACAGTTCCCTATTTTT 58.318 40.909 9.73 0.00 0.00 1.94
452 453 3.343941 TGCGCTACAGTTCCCTATTTT 57.656 42.857 9.73 0.00 0.00 1.82
453 454 3.007635 GTTGCGCTACAGTTCCCTATTT 58.992 45.455 17.16 0.00 0.00 1.40
454 455 2.027561 TGTTGCGCTACAGTTCCCTATT 60.028 45.455 20.65 0.00 0.00 1.73
455 456 1.553248 TGTTGCGCTACAGTTCCCTAT 59.447 47.619 20.65 0.00 0.00 2.57
456 457 0.970640 TGTTGCGCTACAGTTCCCTA 59.029 50.000 20.65 0.00 0.00 3.53
457 458 0.602905 GTGTTGCGCTACAGTTCCCT 60.603 55.000 24.69 0.00 0.00 4.20
458 459 0.882927 TGTGTTGCGCTACAGTTCCC 60.883 55.000 24.69 13.05 0.00 3.97
459 460 1.128692 GATGTGTTGCGCTACAGTTCC 59.871 52.381 24.69 13.41 0.00 3.62
460 461 1.798223 TGATGTGTTGCGCTACAGTTC 59.202 47.619 24.69 21.82 0.00 3.01
461 462 1.800586 CTGATGTGTTGCGCTACAGTT 59.199 47.619 24.69 14.80 0.00 3.16
462 463 1.432514 CTGATGTGTTGCGCTACAGT 58.567 50.000 24.69 16.17 0.00 3.55
463 464 0.095935 GCTGATGTGTTGCGCTACAG 59.904 55.000 24.69 13.59 0.00 2.74
464 465 1.298157 GGCTGATGTGTTGCGCTACA 61.298 55.000 20.65 20.65 0.00 2.74
465 466 1.021390 AGGCTGATGTGTTGCGCTAC 61.021 55.000 15.28 15.28 0.00 3.58
466 467 1.020861 CAGGCTGATGTGTTGCGCTA 61.021 55.000 9.42 0.00 0.00 4.26
467 468 2.033141 AGGCTGATGTGTTGCGCT 59.967 55.556 9.73 0.00 0.00 5.92
468 469 1.298157 TACAGGCTGATGTGTTGCGC 61.298 55.000 23.66 0.00 34.56 6.09
469 470 0.723414 CTACAGGCTGATGTGTTGCG 59.277 55.000 23.66 0.00 34.56 4.85
470 471 2.099141 TCTACAGGCTGATGTGTTGC 57.901 50.000 23.66 0.00 34.56 4.17
471 472 5.633830 AAAATCTACAGGCTGATGTGTTG 57.366 39.130 23.66 0.00 34.56 3.33
491 492 3.243569 ACGGATTGAATGCAACGGAAAAA 60.244 39.130 0.00 0.00 36.72 1.94
492 493 2.294791 ACGGATTGAATGCAACGGAAAA 59.705 40.909 0.00 0.00 36.72 2.29
493 494 1.883275 ACGGATTGAATGCAACGGAAA 59.117 42.857 0.00 0.00 36.72 3.13
494 495 1.529226 ACGGATTGAATGCAACGGAA 58.471 45.000 0.00 0.00 36.72 4.30
495 496 2.388310 TACGGATTGAATGCAACGGA 57.612 45.000 0.00 0.00 36.72 4.69
496 497 2.418628 ACTTACGGATTGAATGCAACGG 59.581 45.455 0.00 0.00 36.72 4.44
497 498 3.120338 ACACTTACGGATTGAATGCAACG 60.120 43.478 0.00 0.00 36.72 4.10
498 499 4.419522 ACACTTACGGATTGAATGCAAC 57.580 40.909 0.00 0.00 36.72 4.17
499 500 5.242434 ACTACACTTACGGATTGAATGCAA 58.758 37.500 0.00 0.00 38.60 4.08
500 501 4.827692 ACTACACTTACGGATTGAATGCA 58.172 39.130 0.00 0.00 0.00 3.96
501 502 7.478520 AATACTACACTTACGGATTGAATGC 57.521 36.000 0.00 0.00 0.00 3.56
504 505 9.537192 CCAATAATACTACACTTACGGATTGAA 57.463 33.333 0.00 0.00 0.00 2.69
505 506 8.698210 ACCAATAATACTACACTTACGGATTGA 58.302 33.333 0.00 0.00 0.00 2.57
506 507 8.882415 ACCAATAATACTACACTTACGGATTG 57.118 34.615 0.00 0.00 0.00 2.67
507 508 9.895138 AAACCAATAATACTACACTTACGGATT 57.105 29.630 0.00 0.00 0.00 3.01
508 509 9.895138 AAAACCAATAATACTACACTTACGGAT 57.105 29.630 0.00 0.00 0.00 4.18
509 510 9.153721 CAAAACCAATAATACTACACTTACGGA 57.846 33.333 0.00 0.00 0.00 4.69
510 511 9.153721 TCAAAACCAATAATACTACACTTACGG 57.846 33.333 0.00 0.00 0.00 4.02
511 512 9.962759 GTCAAAACCAATAATACTACACTTACG 57.037 33.333 0.00 0.00 0.00 3.18
520 521 8.088365 GCCTCAAAAGTCAAAACCAATAATACT 58.912 33.333 0.00 0.00 0.00 2.12
521 522 7.330946 GGCCTCAAAAGTCAAAACCAATAATAC 59.669 37.037 0.00 0.00 0.00 1.89
522 523 7.015682 TGGCCTCAAAAGTCAAAACCAATAATA 59.984 33.333 3.32 0.00 0.00 0.98
523 524 6.183361 TGGCCTCAAAAGTCAAAACCAATAAT 60.183 34.615 3.32 0.00 0.00 1.28
524 525 5.129485 TGGCCTCAAAAGTCAAAACCAATAA 59.871 36.000 3.32 0.00 0.00 1.40
525 526 4.651503 TGGCCTCAAAAGTCAAAACCAATA 59.348 37.500 3.32 0.00 0.00 1.90
526 527 3.454082 TGGCCTCAAAAGTCAAAACCAAT 59.546 39.130 3.32 0.00 0.00 3.16
527 528 2.834549 TGGCCTCAAAAGTCAAAACCAA 59.165 40.909 3.32 0.00 0.00 3.67
528 529 2.461695 TGGCCTCAAAAGTCAAAACCA 58.538 42.857 3.32 0.00 0.00 3.67
529 530 3.118775 AGTTGGCCTCAAAAGTCAAAACC 60.119 43.478 3.32 0.00 34.28 3.27
530 531 3.865164 CAGTTGGCCTCAAAAGTCAAAAC 59.135 43.478 3.32 0.00 34.28 2.43
531 532 3.678529 GCAGTTGGCCTCAAAAGTCAAAA 60.679 43.478 3.32 0.00 34.28 2.44
532 533 2.159114 GCAGTTGGCCTCAAAAGTCAAA 60.159 45.455 3.32 0.00 34.28 2.69
533 534 1.408702 GCAGTTGGCCTCAAAAGTCAA 59.591 47.619 3.32 0.00 34.28 3.18
534 535 1.032014 GCAGTTGGCCTCAAAAGTCA 58.968 50.000 3.32 0.00 34.28 3.41
535 536 1.000938 CTGCAGTTGGCCTCAAAAGTC 60.001 52.381 5.25 0.00 43.89 3.01
536 537 1.035139 CTGCAGTTGGCCTCAAAAGT 58.965 50.000 5.25 0.00 43.89 2.66
537 538 1.268899 CTCTGCAGTTGGCCTCAAAAG 59.731 52.381 14.67 0.00 43.89 2.27
542 543 1.078567 CTCCTCTGCAGTTGGCCTC 60.079 63.158 14.67 0.00 43.89 4.70
544 545 2.045536 CCTCCTCTGCAGTTGGCC 60.046 66.667 14.67 0.00 43.89 5.36
561 562 8.908786 TCATATTCACTTGGATAAATCAGGAC 57.091 34.615 0.00 0.00 0.00 3.85
585 590 1.791204 GGTTCACGGAAAAGTCGTCTC 59.209 52.381 0.00 0.00 38.94 3.36
622 627 4.012374 CAGTTGAATAGTGGTGCTTGGAT 58.988 43.478 0.00 0.00 0.00 3.41
649 667 2.457366 AGATGAACAACCGACTGTCC 57.543 50.000 1.55 0.00 0.00 4.02
654 672 9.453325 TTTTGTTTATAAAGATGAACAACCGAC 57.547 29.630 7.32 0.00 45.82 4.79
712 733 1.641577 GTTCATACCTGTGCTCGACC 58.358 55.000 0.00 0.00 0.00 4.79
844 870 0.247537 CGTGGTTTTAATCGCCTCGC 60.248 55.000 0.00 0.00 33.59 5.03
887 913 4.309950 GTGGCGTGGGAAGACCGT 62.310 66.667 0.00 0.00 44.64 4.83
930 956 1.235281 TGCTGCTGCTGCTTCTTCTG 61.235 55.000 27.67 0.29 40.48 3.02
1012 1038 4.755614 GACCGAGAACGACGCGCT 62.756 66.667 5.73 0.00 42.66 5.92
1013 1039 4.755614 AGACCGAGAACGACGCGC 62.756 66.667 5.73 0.00 42.66 6.86
1042 1068 2.879462 CTTCGCTACGTCCGTGGC 60.879 66.667 16.80 16.80 46.85 5.01
1055 1081 1.066587 GAGACGGCCATCCTCTTCG 59.933 63.158 2.24 0.00 0.00 3.79
1266 1313 0.248907 CGTACAGGTAGTCGGCCATG 60.249 60.000 2.24 0.00 0.00 3.66
1270 1317 2.103736 GGCGTACAGGTAGTCGGC 59.896 66.667 0.00 0.00 38.39 5.54
1632 1679 1.927174 CTTAACACCTCTTCGATGGCG 59.073 52.381 0.00 0.00 39.35 5.69
1641 1688 3.372025 GCCATTCCATCCTTAACACCTCT 60.372 47.826 0.00 0.00 0.00 3.69
1650 1697 0.685458 GCACCTGCCATTCCATCCTT 60.685 55.000 0.00 0.00 34.31 3.36
1663 1710 0.534412 ATCTTCTGGTCGAGCACCTG 59.466 55.000 14.39 4.48 46.98 4.00
1664 1711 0.534412 CATCTTCTGGTCGAGCACCT 59.466 55.000 14.39 0.00 46.98 4.00
1686 1733 2.044053 ATGGCATGGTTCCACCGG 60.044 61.111 0.00 0.00 42.58 5.28
1743 1790 1.636570 CGAAGACCTCGTCGCAGAGA 61.637 60.000 8.27 0.00 42.89 3.10
2091 2138 2.665649 TGATCACGTAGCGGTTCATT 57.334 45.000 0.00 0.00 0.00 2.57
2827 2874 3.436015 CCTCTGAAGAATGTTGCAGTCAG 59.564 47.826 0.00 0.00 35.01 3.51
2848 2897 1.471684 CCTCTGAAGAATGTTGCTGCC 59.528 52.381 0.00 0.00 0.00 4.85
2849 2898 1.135460 GCCTCTGAAGAATGTTGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
2850 2899 2.156917 TGCCTCTGAAGAATGTTGCTG 58.843 47.619 0.00 0.00 0.00 4.41
2851 2900 2.434428 CTGCCTCTGAAGAATGTTGCT 58.566 47.619 0.00 0.00 0.00 3.91
2852 2901 1.135460 GCTGCCTCTGAAGAATGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
2853 2902 2.434428 AGCTGCCTCTGAAGAATGTTG 58.566 47.619 0.00 0.00 0.00 3.33
2854 2903 2.875094 AGCTGCCTCTGAAGAATGTT 57.125 45.000 0.00 0.00 0.00 2.71
2855 2904 2.818432 CAAAGCTGCCTCTGAAGAATGT 59.182 45.455 0.00 0.00 0.00 2.71
2856 2905 2.818432 ACAAAGCTGCCTCTGAAGAATG 59.182 45.455 0.00 0.00 0.00 2.67
2857 2906 2.818432 CACAAAGCTGCCTCTGAAGAAT 59.182 45.455 0.00 0.00 0.00 2.40
2858 2907 2.224606 CACAAAGCTGCCTCTGAAGAA 58.775 47.619 0.00 0.00 0.00 2.52
2859 2908 1.888215 CACAAAGCTGCCTCTGAAGA 58.112 50.000 0.00 0.00 0.00 2.87
2860 2909 0.240411 GCACAAAGCTGCCTCTGAAG 59.760 55.000 0.00 0.00 41.15 3.02
2861 2910 2.334307 GCACAAAGCTGCCTCTGAA 58.666 52.632 0.00 0.00 41.15 3.02
2862 2911 4.069869 GCACAAAGCTGCCTCTGA 57.930 55.556 0.00 0.00 41.15 3.27
2881 2930 0.746923 TCGTCCGATCACGATCTGGT 60.747 55.000 4.31 0.00 43.79 4.00
2957 3006 0.318445 AAACGTTCGGTCTCCAGACG 60.318 55.000 0.00 8.58 45.65 4.18
3002 3061 1.302511 GCTGGGGCGTTCTTCTTCA 60.303 57.895 0.00 0.00 0.00 3.02
3179 3293 9.976255 CATTAACTTGAACATGGCAATTTATTG 57.024 29.630 11.41 12.85 40.66 1.90
3395 3609 7.438459 GGGGATTACATGTACGATATCATTAGC 59.562 40.741 4.68 0.00 0.00 3.09
3667 3912 2.911484 TGTTCAAAAACATGGCAACCC 58.089 42.857 0.00 0.00 40.45 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.