Multiple sequence alignment - TraesCS7D01G260300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G260300 chr7D 100.000 2660 0 0 1 2660 236011757 236009098 0.000000e+00 4913.0
1 TraesCS7D01G260300 chr7D 90.568 880 42 16 1783 2660 402040839 402039999 0.000000e+00 1127.0
2 TraesCS7D01G260300 chr7A 93.894 1392 71 7 378 1760 251254756 251253370 0.000000e+00 2087.0
3 TraesCS7D01G260300 chr7A 83.991 887 101 28 1795 2660 278807570 278808436 0.000000e+00 813.0
4 TraesCS7D01G260300 chr7A 84.045 890 87 30 1788 2659 10164373 10165225 0.000000e+00 806.0
5 TraesCS7D01G260300 chr7B 91.990 1236 52 21 586 1774 212419646 212418411 0.000000e+00 1690.0
6 TraesCS7D01G260300 chr7B 89.663 890 51 16 1782 2660 9879051 9878192 0.000000e+00 1096.0
7 TraesCS7D01G260300 chr7B 81.481 513 63 15 2166 2660 297212965 297213463 2.480000e-105 392.0
8 TraesCS7D01G260300 chr7B 92.727 110 7 1 471 579 212419831 212419722 9.860000e-35 158.0
9 TraesCS7D01G260300 chr7B 86.000 100 13 1 372 471 484270933 484271031 3.620000e-19 106.0
10 TraesCS7D01G260300 chr7B 85.000 100 12 2 372 471 411324844 411324940 6.060000e-17 99.0
11 TraesCS7D01G260300 chr4B 92.308 871 41 11 1795 2660 441170289 441171138 0.000000e+00 1214.0
12 TraesCS7D01G260300 chr5D 86.705 880 88 26 1795 2660 219538626 219539490 0.000000e+00 950.0
13 TraesCS7D01G260300 chr5D 84.238 755 86 27 1795 2538 180664771 180665503 0.000000e+00 704.0
14 TraesCS7D01G260300 chr5D 98.400 375 5 1 1 375 457561700 457561327 0.000000e+00 658.0
15 TraesCS7D01G260300 chr5D 98.400 375 5 1 1 375 463715353 463714980 0.000000e+00 658.0
16 TraesCS7D01G260300 chr5D 78.016 514 90 14 1171 1662 233413624 233413112 4.300000e-78 302.0
17 TraesCS7D01G260300 chr3D 85.568 880 95 23 1795 2660 224689471 224688610 0.000000e+00 893.0
18 TraesCS7D01G260300 chr3D 97.895 380 6 2 1 378 437756985 437756606 0.000000e+00 656.0
19 TraesCS7D01G260300 chr2D 85.455 880 91 26 1795 2653 385696706 385697569 0.000000e+00 881.0
20 TraesCS7D01G260300 chr2D 82.025 879 107 25 1797 2660 448130075 448129233 0.000000e+00 701.0
21 TraesCS7D01G260300 chr2D 88.372 86 4 6 372 454 139003082 139003164 6.060000e-17 99.0
22 TraesCS7D01G260300 chr2A 83.860 886 95 26 1795 2660 1659067 1659924 0.000000e+00 800.0
23 TraesCS7D01G260300 chr5B 83.503 885 111 29 1795 2660 118425712 118426580 0.000000e+00 793.0
24 TraesCS7D01G260300 chr5B 86.056 753 81 18 1918 2660 687443624 687442886 0.000000e+00 787.0
25 TraesCS7D01G260300 chr5B 78.654 520 88 14 1165 1662 271665039 271665557 9.180000e-85 324.0
26 TraesCS7D01G260300 chr5B 90.217 92 6 3 372 462 558283174 558283263 1.670000e-22 117.0
27 TraesCS7D01G260300 chr3A 83.729 885 92 35 1795 2660 48445192 48444341 0.000000e+00 789.0
28 TraesCS7D01G260300 chr3A 81.798 445 66 11 1795 2233 48365774 48365339 2.520000e-95 359.0
29 TraesCS7D01G260300 chr1B 82.979 893 106 27 1795 2660 626807378 626808251 0.000000e+00 765.0
30 TraesCS7D01G260300 chr6A 86.192 717 84 9 978 1687 129340858 129341566 0.000000e+00 761.0
31 TraesCS7D01G260300 chr6D 86.034 716 87 7 978 1687 106079885 106080593 0.000000e+00 756.0
32 TraesCS7D01G260300 chr6D 98.400 375 5 1 1 375 237393596 237393223 0.000000e+00 658.0
33 TraesCS7D01G260300 chrUn 98.400 375 5 1 1 375 408154610 408154237 0.000000e+00 658.0
34 TraesCS7D01G260300 chrUn 98.400 375 5 1 1 375 426266455 426266082 0.000000e+00 658.0
35 TraesCS7D01G260300 chrUn 84.848 99 10 4 372 470 34359888 34359795 7.840000e-16 95.3
36 TraesCS7D01G260300 chrUn 84.848 99 10 4 372 470 269478924 269479017 7.840000e-16 95.3
37 TraesCS7D01G260300 chr4D 98.400 375 5 1 1 375 6709494 6709121 0.000000e+00 658.0
38 TraesCS7D01G260300 chr1D 98.400 375 5 1 1 375 315619466 315619839 0.000000e+00 658.0
39 TraesCS7D01G260300 chr1D 98.400 375 5 1 1 375 476287022 476286649 0.000000e+00 658.0
40 TraesCS7D01G260300 chr1D 82.077 491 49 15 1977 2459 44162247 44162706 1.490000e-102 383.0
41 TraesCS7D01G260300 chr5A 77.388 513 93 14 1172 1662 321328886 321328375 1.560000e-72 283.0
42 TraesCS7D01G260300 chr5A 85.417 96 12 2 372 466 632639551 632639645 6.060000e-17 99.0
43 TraesCS7D01G260300 chr4A 90.000 80 8 0 384 463 571643825 571643746 1.300000e-18 104.0
44 TraesCS7D01G260300 chr4A 87.778 90 9 1 374 463 645686374 645686287 1.300000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G260300 chr7D 236009098 236011757 2659 True 4913 4913 100.0000 1 2660 1 chr7D.!!$R1 2659
1 TraesCS7D01G260300 chr7D 402039999 402040839 840 True 1127 1127 90.5680 1783 2660 1 chr7D.!!$R2 877
2 TraesCS7D01G260300 chr7A 251253370 251254756 1386 True 2087 2087 93.8940 378 1760 1 chr7A.!!$R1 1382
3 TraesCS7D01G260300 chr7A 278807570 278808436 866 False 813 813 83.9910 1795 2660 1 chr7A.!!$F2 865
4 TraesCS7D01G260300 chr7A 10164373 10165225 852 False 806 806 84.0450 1788 2659 1 chr7A.!!$F1 871
5 TraesCS7D01G260300 chr7B 9878192 9879051 859 True 1096 1096 89.6630 1782 2660 1 chr7B.!!$R1 878
6 TraesCS7D01G260300 chr7B 212418411 212419831 1420 True 924 1690 92.3585 471 1774 2 chr7B.!!$R2 1303
7 TraesCS7D01G260300 chr4B 441170289 441171138 849 False 1214 1214 92.3080 1795 2660 1 chr4B.!!$F1 865
8 TraesCS7D01G260300 chr5D 219538626 219539490 864 False 950 950 86.7050 1795 2660 1 chr5D.!!$F2 865
9 TraesCS7D01G260300 chr5D 180664771 180665503 732 False 704 704 84.2380 1795 2538 1 chr5D.!!$F1 743
10 TraesCS7D01G260300 chr5D 233413112 233413624 512 True 302 302 78.0160 1171 1662 1 chr5D.!!$R1 491
11 TraesCS7D01G260300 chr3D 224688610 224689471 861 True 893 893 85.5680 1795 2660 1 chr3D.!!$R1 865
12 TraesCS7D01G260300 chr2D 385696706 385697569 863 False 881 881 85.4550 1795 2653 1 chr2D.!!$F2 858
13 TraesCS7D01G260300 chr2D 448129233 448130075 842 True 701 701 82.0250 1797 2660 1 chr2D.!!$R1 863
14 TraesCS7D01G260300 chr2A 1659067 1659924 857 False 800 800 83.8600 1795 2660 1 chr2A.!!$F1 865
15 TraesCS7D01G260300 chr5B 118425712 118426580 868 False 793 793 83.5030 1795 2660 1 chr5B.!!$F1 865
16 TraesCS7D01G260300 chr5B 687442886 687443624 738 True 787 787 86.0560 1918 2660 1 chr5B.!!$R1 742
17 TraesCS7D01G260300 chr5B 271665039 271665557 518 False 324 324 78.6540 1165 1662 1 chr5B.!!$F2 497
18 TraesCS7D01G260300 chr3A 48444341 48445192 851 True 789 789 83.7290 1795 2660 1 chr3A.!!$R2 865
19 TraesCS7D01G260300 chr1B 626807378 626808251 873 False 765 765 82.9790 1795 2660 1 chr1B.!!$F1 865
20 TraesCS7D01G260300 chr6A 129340858 129341566 708 False 761 761 86.1920 978 1687 1 chr6A.!!$F1 709
21 TraesCS7D01G260300 chr6D 106079885 106080593 708 False 756 756 86.0340 978 1687 1 chr6D.!!$F1 709
22 TraesCS7D01G260300 chr5A 321328375 321328886 511 True 283 283 77.3880 1172 1662 1 chr5A.!!$R1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.03309 GGGTCGTCTTTCGTCCAAGT 59.967 55.0 5.99 0.0 46.4 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1847 0.103026 TCGAGATCCATTGAGCACGG 59.897 55.0 2.38 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.796796 GTCTTTGCGATCCTGCACC 59.203 57.895 0.00 0.00 46.25 5.01
19 20 1.741401 TCTTTGCGATCCTGCACCG 60.741 57.895 0.00 0.00 46.25 4.94
20 21 2.745884 TTTGCGATCCTGCACCGG 60.746 61.111 0.00 0.00 46.25 5.28
21 22 4.776322 TTGCGATCCTGCACCGGG 62.776 66.667 6.32 0.00 46.25 5.73
23 24 4.899239 GCGATCCTGCACCGGGAG 62.899 72.222 6.32 0.00 42.74 4.30
24 25 3.147595 CGATCCTGCACCGGGAGA 61.148 66.667 6.32 0.00 42.74 3.71
25 26 2.818132 GATCCTGCACCGGGAGAG 59.182 66.667 6.32 0.00 42.74 3.20
26 27 2.765807 ATCCTGCACCGGGAGAGG 60.766 66.667 6.32 7.55 42.74 3.69
27 28 3.317436 ATCCTGCACCGGGAGAGGA 62.317 63.158 17.18 17.18 42.74 3.71
28 29 3.775654 CCTGCACCGGGAGAGGAC 61.776 72.222 6.32 0.00 33.71 3.85
29 30 4.135153 CTGCACCGGGAGAGGACG 62.135 72.222 6.32 0.00 33.71 4.79
30 31 4.671590 TGCACCGGGAGAGGACGA 62.672 66.667 6.32 0.00 34.73 4.20
31 32 3.379445 GCACCGGGAGAGGACGAA 61.379 66.667 6.32 0.00 34.73 3.85
32 33 2.722201 GCACCGGGAGAGGACGAAT 61.722 63.158 6.32 0.00 34.73 3.34
33 34 1.898154 CACCGGGAGAGGACGAATT 59.102 57.895 6.32 0.00 34.73 2.17
34 35 1.108776 CACCGGGAGAGGACGAATTA 58.891 55.000 6.32 0.00 34.73 1.40
35 36 1.067212 CACCGGGAGAGGACGAATTAG 59.933 57.143 6.32 0.00 34.73 1.73
36 37 0.674534 CCGGGAGAGGACGAATTAGG 59.325 60.000 0.00 0.00 0.00 2.69
37 38 1.400737 CGGGAGAGGACGAATTAGGT 58.599 55.000 0.00 0.00 0.00 3.08
38 39 1.755380 CGGGAGAGGACGAATTAGGTT 59.245 52.381 0.00 0.00 0.00 3.50
39 40 2.167900 CGGGAGAGGACGAATTAGGTTT 59.832 50.000 0.00 0.00 0.00 3.27
40 41 3.369157 CGGGAGAGGACGAATTAGGTTTT 60.369 47.826 0.00 0.00 0.00 2.43
41 42 4.586884 GGGAGAGGACGAATTAGGTTTTT 58.413 43.478 0.00 0.00 0.00 1.94
42 43 4.395231 GGGAGAGGACGAATTAGGTTTTTG 59.605 45.833 0.00 0.00 0.00 2.44
43 44 4.395231 GGAGAGGACGAATTAGGTTTTTGG 59.605 45.833 0.00 0.00 0.00 3.28
44 45 4.332828 AGAGGACGAATTAGGTTTTTGGG 58.667 43.478 0.00 0.00 0.00 4.12
45 46 4.042435 AGAGGACGAATTAGGTTTTTGGGA 59.958 41.667 0.00 0.00 0.00 4.37
46 47 4.732065 AGGACGAATTAGGTTTTTGGGAA 58.268 39.130 0.00 0.00 0.00 3.97
47 48 4.765339 AGGACGAATTAGGTTTTTGGGAAG 59.235 41.667 0.00 0.00 0.00 3.46
48 49 4.482386 GACGAATTAGGTTTTTGGGAAGC 58.518 43.478 0.00 0.00 0.00 3.86
49 50 3.057806 ACGAATTAGGTTTTTGGGAAGCG 60.058 43.478 0.00 0.00 32.52 4.68
50 51 3.057806 CGAATTAGGTTTTTGGGAAGCGT 60.058 43.478 0.00 0.00 32.52 5.07
51 52 4.557895 CGAATTAGGTTTTTGGGAAGCGTT 60.558 41.667 0.00 0.00 32.52 4.84
52 53 3.719173 TTAGGTTTTTGGGAAGCGTTG 57.281 42.857 0.00 0.00 32.52 4.10
53 54 1.480789 AGGTTTTTGGGAAGCGTTGT 58.519 45.000 0.00 0.00 32.52 3.32
54 55 1.136110 AGGTTTTTGGGAAGCGTTGTG 59.864 47.619 0.00 0.00 32.52 3.33
55 56 0.927537 GTTTTTGGGAAGCGTTGTGC 59.072 50.000 0.00 0.00 46.98 4.57
65 66 4.415501 CGTTGTGCGCGACTGCTC 62.416 66.667 12.10 0.00 39.65 4.26
66 67 3.337889 GTTGTGCGCGACTGCTCA 61.338 61.111 12.10 0.00 39.65 4.26
67 68 2.587473 TTGTGCGCGACTGCTCAA 60.587 55.556 12.10 2.06 43.63 3.02
68 69 2.176926 TTGTGCGCGACTGCTCAAA 61.177 52.632 12.10 0.00 43.10 2.69
69 70 1.506309 TTGTGCGCGACTGCTCAAAT 61.506 50.000 12.10 0.00 43.10 2.32
70 71 1.207593 GTGCGCGACTGCTCAAATT 59.792 52.632 12.10 0.00 37.61 1.82
71 72 0.790866 GTGCGCGACTGCTCAAATTC 60.791 55.000 12.10 0.00 37.61 2.17
72 73 1.578618 GCGCGACTGCTCAAATTCG 60.579 57.895 12.10 0.00 39.65 3.34
73 74 1.781555 CGCGACTGCTCAAATTCGT 59.218 52.632 0.00 0.00 39.65 3.85
74 75 0.246912 CGCGACTGCTCAAATTCGTC 60.247 55.000 0.00 0.00 39.65 4.20
75 76 0.790207 GCGACTGCTCAAATTCGTCA 59.210 50.000 0.00 0.00 38.39 4.35
76 77 1.394917 GCGACTGCTCAAATTCGTCAT 59.605 47.619 0.00 0.00 38.39 3.06
77 78 2.535732 GCGACTGCTCAAATTCGTCATC 60.536 50.000 0.00 0.00 38.39 2.92
78 79 2.667969 CGACTGCTCAAATTCGTCATCA 59.332 45.455 0.00 0.00 0.00 3.07
79 80 3.482598 CGACTGCTCAAATTCGTCATCAC 60.483 47.826 0.00 0.00 0.00 3.06
81 82 1.731709 TGCTCAAATTCGTCATCACGG 59.268 47.619 0.00 0.00 46.70 4.94
82 83 1.062587 GCTCAAATTCGTCATCACGGG 59.937 52.381 0.00 0.00 46.70 5.28
83 84 2.346803 CTCAAATTCGTCATCACGGGT 58.653 47.619 0.00 0.00 46.70 5.28
84 85 2.343101 TCAAATTCGTCATCACGGGTC 58.657 47.619 0.00 0.00 46.70 4.46
85 86 1.060553 CAAATTCGTCATCACGGGTCG 59.939 52.381 0.00 0.00 46.70 4.79
86 87 0.245539 AATTCGTCATCACGGGTCGT 59.754 50.000 0.00 0.00 46.70 4.34
87 88 0.179145 ATTCGTCATCACGGGTCGTC 60.179 55.000 0.00 0.00 46.70 4.20
88 89 1.239296 TTCGTCATCACGGGTCGTCT 61.239 55.000 0.00 0.00 46.70 4.18
89 90 1.211969 CGTCATCACGGGTCGTCTT 59.788 57.895 0.00 0.00 42.73 3.01
90 91 0.388134 CGTCATCACGGGTCGTCTTT 60.388 55.000 0.00 0.00 42.73 2.52
91 92 1.347320 GTCATCACGGGTCGTCTTTC 58.653 55.000 0.00 0.00 38.32 2.62
92 93 0.109458 TCATCACGGGTCGTCTTTCG 60.109 55.000 0.00 0.00 38.32 3.46
93 94 0.388134 CATCACGGGTCGTCTTTCGT 60.388 55.000 0.00 0.00 38.32 3.85
94 95 0.109412 ATCACGGGTCGTCTTTCGTC 60.109 55.000 0.00 0.00 38.32 4.20
95 96 1.731969 CACGGGTCGTCTTTCGTCC 60.732 63.158 0.00 0.00 44.53 4.79
96 97 2.195567 ACGGGTCGTCTTTCGTCCA 61.196 57.895 5.99 0.00 46.40 4.02
97 98 1.007038 CGGGTCGTCTTTCGTCCAA 60.007 57.895 5.99 0.00 46.40 3.53
98 99 1.007336 CGGGTCGTCTTTCGTCCAAG 61.007 60.000 5.99 0.00 46.40 3.61
99 100 0.033090 GGGTCGTCTTTCGTCCAAGT 59.967 55.000 5.99 0.00 46.40 3.16
100 101 1.416373 GGTCGTCTTTCGTCCAAGTC 58.584 55.000 0.00 0.00 44.61 3.01
101 102 1.050767 GTCGTCTTTCGTCCAAGTCG 58.949 55.000 5.55 5.55 40.80 4.18
102 103 0.039798 TCGTCTTTCGTCCAAGTCGG 60.040 55.000 9.80 0.00 36.40 4.79
103 104 1.007336 CGTCTTTCGTCCAAGTCGGG 61.007 60.000 0.00 0.00 33.40 5.14
104 105 1.005394 TCTTTCGTCCAAGTCGGGC 60.005 57.895 0.00 0.00 35.26 6.13
111 112 4.077184 CCAAGTCGGGCGGTGCTA 62.077 66.667 0.00 0.00 0.00 3.49
112 113 2.813908 CAAGTCGGGCGGTGCTAC 60.814 66.667 0.00 0.00 0.00 3.58
113 114 2.995574 AAGTCGGGCGGTGCTACT 60.996 61.111 0.00 0.00 0.00 2.57
114 115 3.003113 AAGTCGGGCGGTGCTACTC 62.003 63.158 0.00 0.00 0.00 2.59
115 116 3.755628 GTCGGGCGGTGCTACTCA 61.756 66.667 0.00 0.00 0.00 3.41
116 117 2.758327 TCGGGCGGTGCTACTCAT 60.758 61.111 0.00 0.00 0.00 2.90
117 118 2.279517 CGGGCGGTGCTACTCATC 60.280 66.667 0.00 0.00 0.00 2.92
121 122 4.286967 CGGTGCTACTCATCGTCG 57.713 61.111 0.00 0.00 43.96 5.12
122 123 1.428219 CGGTGCTACTCATCGTCGT 59.572 57.895 0.00 0.00 43.96 4.34
123 124 0.654160 CGGTGCTACTCATCGTCGTA 59.346 55.000 0.00 0.00 43.96 3.43
124 125 1.263484 CGGTGCTACTCATCGTCGTAT 59.737 52.381 0.00 0.00 43.96 3.06
125 126 2.286831 CGGTGCTACTCATCGTCGTATT 60.287 50.000 0.00 0.00 43.96 1.89
126 127 3.298317 GGTGCTACTCATCGTCGTATTC 58.702 50.000 0.00 0.00 0.00 1.75
127 128 3.242969 GGTGCTACTCATCGTCGTATTCA 60.243 47.826 0.00 0.00 0.00 2.57
128 129 4.537965 GTGCTACTCATCGTCGTATTCAT 58.462 43.478 0.00 0.00 0.00 2.57
129 130 4.613448 GTGCTACTCATCGTCGTATTCATC 59.387 45.833 0.00 0.00 0.00 2.92
130 131 3.841317 GCTACTCATCGTCGTATTCATCG 59.159 47.826 0.00 0.00 0.00 3.84
131 132 2.651701 ACTCATCGTCGTATTCATCGC 58.348 47.619 0.00 0.00 0.00 4.58
132 133 1.979469 CTCATCGTCGTATTCATCGCC 59.021 52.381 0.00 0.00 0.00 5.54
133 134 0.702924 CATCGTCGTATTCATCGCCG 59.297 55.000 0.00 0.00 0.00 6.46
134 135 0.309922 ATCGTCGTATTCATCGCCGT 59.690 50.000 0.00 0.00 31.87 5.68
135 136 0.316442 TCGTCGTATTCATCGCCGTC 60.316 55.000 0.00 0.00 31.87 4.79
136 137 0.590481 CGTCGTATTCATCGCCGTCA 60.590 55.000 0.00 0.00 0.00 4.35
137 138 1.121240 GTCGTATTCATCGCCGTCAG 58.879 55.000 0.00 0.00 0.00 3.51
138 139 0.594028 TCGTATTCATCGCCGTCAGC 60.594 55.000 0.00 0.00 38.52 4.26
139 140 0.869880 CGTATTCATCGCCGTCAGCA 60.870 55.000 0.00 0.00 44.04 4.41
140 141 0.855349 GTATTCATCGCCGTCAGCAG 59.145 55.000 0.00 0.00 44.04 4.24
141 142 0.875908 TATTCATCGCCGTCAGCAGC 60.876 55.000 0.00 0.00 44.04 5.25
142 143 2.857575 ATTCATCGCCGTCAGCAGCA 62.858 55.000 0.00 0.00 44.04 4.41
143 144 3.561213 CATCGCCGTCAGCAGCAG 61.561 66.667 0.00 0.00 44.04 4.24
144 145 3.763356 ATCGCCGTCAGCAGCAGA 61.763 61.111 0.00 0.00 44.04 4.26
145 146 3.086391 ATCGCCGTCAGCAGCAGAT 62.086 57.895 0.00 0.00 44.04 2.90
146 147 2.967929 ATCGCCGTCAGCAGCAGATC 62.968 60.000 0.00 0.00 44.04 2.75
147 148 2.125391 GCCGTCAGCAGCAGATCA 60.125 61.111 0.00 0.00 42.97 2.92
148 149 1.523258 GCCGTCAGCAGCAGATCAT 60.523 57.895 0.00 0.00 42.97 2.45
149 150 1.497223 GCCGTCAGCAGCAGATCATC 61.497 60.000 0.00 0.00 42.97 2.92
150 151 1.213733 CCGTCAGCAGCAGATCATCG 61.214 60.000 0.00 0.00 0.00 3.84
151 152 1.819226 CGTCAGCAGCAGATCATCGC 61.819 60.000 0.00 0.00 0.00 4.58
152 153 1.227468 TCAGCAGCAGATCATCGCC 60.227 57.895 0.00 0.00 0.00 5.54
153 154 1.523032 CAGCAGCAGATCATCGCCA 60.523 57.895 0.00 0.00 0.00 5.69
154 155 1.093496 CAGCAGCAGATCATCGCCAA 61.093 55.000 0.00 0.00 0.00 4.52
155 156 1.094073 AGCAGCAGATCATCGCCAAC 61.094 55.000 0.00 0.00 0.00 3.77
156 157 1.371337 GCAGCAGATCATCGCCAACA 61.371 55.000 0.00 0.00 0.00 3.33
157 158 1.306148 CAGCAGATCATCGCCAACAT 58.694 50.000 0.00 0.00 0.00 2.71
158 159 1.263484 CAGCAGATCATCGCCAACATC 59.737 52.381 0.00 0.00 0.00 3.06
159 160 1.134310 AGCAGATCATCGCCAACATCA 60.134 47.619 0.00 0.00 0.00 3.07
160 161 1.878088 GCAGATCATCGCCAACATCAT 59.122 47.619 0.00 0.00 0.00 2.45
161 162 2.095869 GCAGATCATCGCCAACATCATC 60.096 50.000 0.00 0.00 0.00 2.92
162 163 3.135994 CAGATCATCGCCAACATCATCA 58.864 45.455 0.00 0.00 0.00 3.07
163 164 3.751698 CAGATCATCGCCAACATCATCAT 59.248 43.478 0.00 0.00 0.00 2.45
164 165 4.001652 AGATCATCGCCAACATCATCATC 58.998 43.478 0.00 0.00 0.00 2.92
165 166 3.196939 TCATCGCCAACATCATCATCA 57.803 42.857 0.00 0.00 0.00 3.07
166 167 3.543665 TCATCGCCAACATCATCATCAA 58.456 40.909 0.00 0.00 0.00 2.57
167 168 3.313249 TCATCGCCAACATCATCATCAAC 59.687 43.478 0.00 0.00 0.00 3.18
168 169 2.709213 TCGCCAACATCATCATCAACA 58.291 42.857 0.00 0.00 0.00 3.33
169 170 2.419673 TCGCCAACATCATCATCAACAC 59.580 45.455 0.00 0.00 0.00 3.32
170 171 2.421073 CGCCAACATCATCATCAACACT 59.579 45.455 0.00 0.00 0.00 3.55
171 172 3.729762 CGCCAACATCATCATCAACACTG 60.730 47.826 0.00 0.00 0.00 3.66
172 173 3.192001 GCCAACATCATCATCAACACTGT 59.808 43.478 0.00 0.00 0.00 3.55
173 174 4.673580 GCCAACATCATCATCAACACTGTC 60.674 45.833 0.00 0.00 0.00 3.51
174 175 4.436451 CCAACATCATCATCAACACTGTCG 60.436 45.833 0.00 0.00 0.00 4.35
175 176 2.674852 ACATCATCATCAACACTGTCGC 59.325 45.455 0.00 0.00 0.00 5.19
176 177 2.453983 TCATCATCAACACTGTCGCA 57.546 45.000 0.00 0.00 0.00 5.10
177 178 2.068519 TCATCATCAACACTGTCGCAC 58.931 47.619 0.00 0.00 0.00 5.34
178 179 1.129251 CATCATCAACACTGTCGCACC 59.871 52.381 0.00 0.00 0.00 5.01
179 180 0.602638 TCATCAACACTGTCGCACCC 60.603 55.000 0.00 0.00 0.00 4.61
180 181 0.884259 CATCAACACTGTCGCACCCA 60.884 55.000 0.00 0.00 0.00 4.51
181 182 0.036732 ATCAACACTGTCGCACCCAT 59.963 50.000 0.00 0.00 0.00 4.00
182 183 0.682292 TCAACACTGTCGCACCCATA 59.318 50.000 0.00 0.00 0.00 2.74
183 184 1.070914 TCAACACTGTCGCACCCATAA 59.929 47.619 0.00 0.00 0.00 1.90
184 185 2.083774 CAACACTGTCGCACCCATAAT 58.916 47.619 0.00 0.00 0.00 1.28
185 186 3.055747 TCAACACTGTCGCACCCATAATA 60.056 43.478 0.00 0.00 0.00 0.98
186 187 3.179443 ACACTGTCGCACCCATAATAG 57.821 47.619 0.00 0.00 0.00 1.73
187 188 1.867233 CACTGTCGCACCCATAATAGC 59.133 52.381 0.00 0.00 0.00 2.97
188 189 1.762957 ACTGTCGCACCCATAATAGCT 59.237 47.619 0.00 0.00 0.00 3.32
189 190 2.963101 ACTGTCGCACCCATAATAGCTA 59.037 45.455 0.00 0.00 0.00 3.32
190 191 3.386726 ACTGTCGCACCCATAATAGCTAA 59.613 43.478 0.00 0.00 0.00 3.09
191 192 3.724374 TGTCGCACCCATAATAGCTAAC 58.276 45.455 0.00 0.00 0.00 2.34
192 193 2.729882 GTCGCACCCATAATAGCTAACG 59.270 50.000 0.00 0.00 0.00 3.18
193 194 2.624364 TCGCACCCATAATAGCTAACGA 59.376 45.455 0.00 0.00 0.00 3.85
194 195 3.257375 TCGCACCCATAATAGCTAACGAT 59.743 43.478 0.00 0.00 0.00 3.73
195 196 3.612860 CGCACCCATAATAGCTAACGATC 59.387 47.826 0.00 0.00 0.00 3.69
196 197 4.566004 GCACCCATAATAGCTAACGATCA 58.434 43.478 0.00 0.00 0.00 2.92
197 198 4.627467 GCACCCATAATAGCTAACGATCAG 59.373 45.833 0.00 0.00 0.00 2.90
198 199 5.784177 CACCCATAATAGCTAACGATCAGT 58.216 41.667 0.00 0.00 0.00 3.41
199 200 6.571731 GCACCCATAATAGCTAACGATCAGTA 60.572 42.308 0.00 0.00 0.00 2.74
200 201 6.807230 CACCCATAATAGCTAACGATCAGTAC 59.193 42.308 0.00 0.00 0.00 2.73
201 202 6.028368 CCCATAATAGCTAACGATCAGTACG 58.972 44.000 0.00 0.00 0.00 3.67
202 203 6.349115 CCCATAATAGCTAACGATCAGTACGT 60.349 42.308 0.00 0.00 45.89 3.57
203 204 6.741811 CCATAATAGCTAACGATCAGTACGTC 59.258 42.308 0.00 0.00 43.16 4.34
204 205 4.745837 ATAGCTAACGATCAGTACGTCC 57.254 45.455 0.00 0.00 43.16 4.79
205 206 2.362736 AGCTAACGATCAGTACGTCCA 58.637 47.619 0.00 0.00 43.16 4.02
206 207 2.751259 AGCTAACGATCAGTACGTCCAA 59.249 45.455 0.00 0.00 43.16 3.53
207 208 2.850647 GCTAACGATCAGTACGTCCAAC 59.149 50.000 0.00 0.00 43.16 3.77
208 209 3.671433 GCTAACGATCAGTACGTCCAACA 60.671 47.826 0.00 0.00 43.16 3.33
209 210 3.587797 AACGATCAGTACGTCCAACAT 57.412 42.857 0.00 0.00 43.16 2.71
210 211 3.146618 ACGATCAGTACGTCCAACATC 57.853 47.619 0.00 0.00 39.87 3.06
211 212 2.159282 ACGATCAGTACGTCCAACATCC 60.159 50.000 0.00 0.00 39.87 3.51
212 213 2.159296 CGATCAGTACGTCCAACATCCA 60.159 50.000 0.00 0.00 0.00 3.41
213 214 2.736144 TCAGTACGTCCAACATCCAC 57.264 50.000 0.00 0.00 0.00 4.02
214 215 2.244695 TCAGTACGTCCAACATCCACT 58.755 47.619 0.00 0.00 0.00 4.00
215 216 2.029380 TCAGTACGTCCAACATCCACTG 60.029 50.000 0.00 0.00 34.60 3.66
216 217 1.968493 AGTACGTCCAACATCCACTGT 59.032 47.619 0.00 0.00 40.84 3.55
218 219 1.878953 ACGTCCAACATCCACTGTTC 58.121 50.000 0.00 0.00 44.99 3.18
219 220 1.140052 ACGTCCAACATCCACTGTTCA 59.860 47.619 0.00 0.00 44.99 3.18
220 221 2.224523 ACGTCCAACATCCACTGTTCAT 60.225 45.455 0.00 0.00 44.99 2.57
221 222 2.160219 CGTCCAACATCCACTGTTCATG 59.840 50.000 0.00 0.00 44.99 3.07
222 223 3.149196 GTCCAACATCCACTGTTCATGT 58.851 45.455 0.00 0.00 44.99 3.21
223 224 3.189287 GTCCAACATCCACTGTTCATGTC 59.811 47.826 0.00 0.00 44.99 3.06
224 225 3.072915 TCCAACATCCACTGTTCATGTCT 59.927 43.478 0.00 0.00 44.99 3.41
225 226 3.189910 CCAACATCCACTGTTCATGTCTG 59.810 47.826 0.00 4.19 44.99 3.51
226 227 3.777106 ACATCCACTGTTCATGTCTGT 57.223 42.857 0.00 0.00 32.90 3.41
227 228 4.090761 ACATCCACTGTTCATGTCTGTT 57.909 40.909 0.00 0.00 32.90 3.16
228 229 4.464008 ACATCCACTGTTCATGTCTGTTT 58.536 39.130 0.00 0.00 32.90 2.83
229 230 4.516698 ACATCCACTGTTCATGTCTGTTTC 59.483 41.667 0.00 0.00 32.90 2.78
230 231 4.422073 TCCACTGTTCATGTCTGTTTCT 57.578 40.909 0.00 0.00 0.00 2.52
231 232 5.545063 TCCACTGTTCATGTCTGTTTCTA 57.455 39.130 0.00 0.00 0.00 2.10
232 233 5.297547 TCCACTGTTCATGTCTGTTTCTAC 58.702 41.667 0.00 0.00 0.00 2.59
233 234 5.056480 CCACTGTTCATGTCTGTTTCTACA 58.944 41.667 0.00 0.00 0.00 2.74
246 247 6.946229 CTGTTTCTACAGCTATTGTTACGT 57.054 37.500 0.00 0.00 44.81 3.57
247 248 6.699895 TGTTTCTACAGCTATTGTTACGTG 57.300 37.500 0.00 0.00 41.29 4.49
248 249 6.218019 TGTTTCTACAGCTATTGTTACGTGT 58.782 36.000 0.00 0.00 41.29 4.49
249 250 6.702723 TGTTTCTACAGCTATTGTTACGTGTT 59.297 34.615 0.00 0.00 41.29 3.32
250 251 7.225145 TGTTTCTACAGCTATTGTTACGTGTTT 59.775 33.333 0.00 0.00 41.29 2.83
251 252 6.699895 TCTACAGCTATTGTTACGTGTTTG 57.300 37.500 0.00 0.00 41.29 2.93
252 253 4.141855 ACAGCTATTGTTACGTGTTTGC 57.858 40.909 0.00 0.00 36.31 3.68
253 254 3.813166 ACAGCTATTGTTACGTGTTTGCT 59.187 39.130 0.00 0.00 36.31 3.91
254 255 4.151070 CAGCTATTGTTACGTGTTTGCTG 58.849 43.478 0.00 5.38 39.16 4.41
255 256 2.908626 GCTATTGTTACGTGTTTGCTGC 59.091 45.455 0.00 0.00 0.00 5.25
256 257 3.364964 GCTATTGTTACGTGTTTGCTGCT 60.365 43.478 0.00 0.00 0.00 4.24
257 258 2.466870 TTGTTACGTGTTTGCTGCTG 57.533 45.000 0.00 0.00 0.00 4.41
258 259 1.374560 TGTTACGTGTTTGCTGCTGT 58.625 45.000 0.00 0.00 0.00 4.40
259 260 1.740585 TGTTACGTGTTTGCTGCTGTT 59.259 42.857 0.00 0.00 0.00 3.16
260 261 2.937149 TGTTACGTGTTTGCTGCTGTTA 59.063 40.909 0.00 0.00 0.00 2.41
261 262 3.562141 TGTTACGTGTTTGCTGCTGTTAT 59.438 39.130 0.00 0.00 0.00 1.89
262 263 2.686558 ACGTGTTTGCTGCTGTTATG 57.313 45.000 0.00 0.00 0.00 1.90
263 264 1.330306 CGTGTTTGCTGCTGTTATGC 58.670 50.000 0.00 0.00 0.00 3.14
264 265 1.334870 CGTGTTTGCTGCTGTTATGCA 60.335 47.619 0.00 0.00 41.05 3.96
265 266 2.669113 CGTGTTTGCTGCTGTTATGCAT 60.669 45.455 3.79 3.79 42.48 3.96
266 267 2.664568 GTGTTTGCTGCTGTTATGCATG 59.335 45.455 10.16 0.00 42.48 4.06
267 268 2.296752 TGTTTGCTGCTGTTATGCATGT 59.703 40.909 10.16 0.00 42.48 3.21
268 269 2.919229 GTTTGCTGCTGTTATGCATGTC 59.081 45.455 10.16 2.63 42.48 3.06
269 270 2.118313 TGCTGCTGTTATGCATGTCT 57.882 45.000 10.16 0.00 42.48 3.41
270 271 2.439409 TGCTGCTGTTATGCATGTCTT 58.561 42.857 10.16 0.00 42.48 3.01
271 272 2.162809 TGCTGCTGTTATGCATGTCTTG 59.837 45.455 10.16 0.00 42.48 3.02
286 287 6.551385 CATGTCTTGCTGTTCTTCTAGTTT 57.449 37.500 0.00 0.00 0.00 2.66
287 288 5.991328 TGTCTTGCTGTTCTTCTAGTTTG 57.009 39.130 0.00 0.00 0.00 2.93
288 289 4.273480 TGTCTTGCTGTTCTTCTAGTTTGC 59.727 41.667 0.00 0.00 0.00 3.68
289 290 4.513318 GTCTTGCTGTTCTTCTAGTTTGCT 59.487 41.667 0.00 0.00 0.00 3.91
290 291 5.696724 GTCTTGCTGTTCTTCTAGTTTGCTA 59.303 40.000 0.00 0.00 0.00 3.49
291 292 5.928839 TCTTGCTGTTCTTCTAGTTTGCTAG 59.071 40.000 0.00 0.00 44.60 3.42
303 304 7.194607 TCTAGTTTGCTAGATTATTGCATGC 57.805 36.000 11.82 11.82 46.25 4.06
304 305 6.994496 TCTAGTTTGCTAGATTATTGCATGCT 59.006 34.615 20.33 1.26 46.25 3.79
305 306 8.150296 TCTAGTTTGCTAGATTATTGCATGCTA 58.850 33.333 20.33 12.49 46.25 3.49
306 307 7.199541 AGTTTGCTAGATTATTGCATGCTAG 57.800 36.000 20.33 11.08 39.44 3.42
307 308 6.769822 AGTTTGCTAGATTATTGCATGCTAGT 59.230 34.615 20.33 7.25 39.44 2.57
308 309 7.933577 AGTTTGCTAGATTATTGCATGCTAGTA 59.066 33.333 20.33 6.90 39.44 1.82
309 310 8.725148 GTTTGCTAGATTATTGCATGCTAGTAT 58.275 33.333 20.33 8.74 39.44 2.12
310 311 8.484641 TTGCTAGATTATTGCATGCTAGTATC 57.515 34.615 20.33 16.54 39.44 2.24
311 312 7.845037 TGCTAGATTATTGCATGCTAGTATCT 58.155 34.615 20.33 21.74 34.60 1.98
312 313 7.978414 TGCTAGATTATTGCATGCTAGTATCTC 59.022 37.037 22.52 14.61 34.60 2.75
313 314 8.196771 GCTAGATTATTGCATGCTAGTATCTCT 58.803 37.037 22.52 16.16 33.01 3.10
316 317 8.814931 AGATTATTGCATGCTAGTATCTCTTCT 58.185 33.333 20.33 5.38 0.00 2.85
319 320 6.968263 TTGCATGCTAGTATCTCTTCTAGT 57.032 37.500 20.33 0.00 36.84 2.57
320 321 6.567687 TGCATGCTAGTATCTCTTCTAGTC 57.432 41.667 20.33 0.00 36.84 2.59
321 322 6.064717 TGCATGCTAGTATCTCTTCTAGTCA 58.935 40.000 20.33 0.00 36.84 3.41
322 323 6.718912 TGCATGCTAGTATCTCTTCTAGTCAT 59.281 38.462 20.33 0.00 36.84 3.06
323 324 7.028962 GCATGCTAGTATCTCTTCTAGTCATG 58.971 42.308 11.37 19.40 42.65 3.07
324 325 7.094420 GCATGCTAGTATCTCTTCTAGTCATGA 60.094 40.741 23.39 0.00 42.55 3.07
325 326 8.791675 CATGCTAGTATCTCTTCTAGTCATGAA 58.208 37.037 19.20 0.00 42.55 2.57
326 327 8.932434 TGCTAGTATCTCTTCTAGTCATGAAT 57.068 34.615 0.00 0.00 36.84 2.57
327 328 9.360901 TGCTAGTATCTCTTCTAGTCATGAATT 57.639 33.333 0.00 0.00 36.84 2.17
354 355 9.807649 ATTTACTGGAATTAATCATGAACTTGC 57.192 29.630 0.00 0.00 0.00 4.01
355 356 6.212888 ACTGGAATTAATCATGAACTTGCC 57.787 37.500 0.00 0.00 0.00 4.52
356 357 5.954150 ACTGGAATTAATCATGAACTTGCCT 59.046 36.000 0.00 0.00 0.00 4.75
357 358 7.118723 ACTGGAATTAATCATGAACTTGCCTA 58.881 34.615 0.00 0.00 0.00 3.93
358 359 7.615365 ACTGGAATTAATCATGAACTTGCCTAA 59.385 33.333 0.00 0.00 0.00 2.69
359 360 8.537728 TGGAATTAATCATGAACTTGCCTAAT 57.462 30.769 0.00 0.00 0.00 1.73
360 361 9.639563 TGGAATTAATCATGAACTTGCCTAATA 57.360 29.630 0.00 0.00 0.00 0.98
365 366 9.639563 TTAATCATGAACTTGCCTAATATTCCA 57.360 29.630 0.00 0.00 0.00 3.53
366 367 8.537728 AATCATGAACTTGCCTAATATTCCAA 57.462 30.769 0.00 0.00 0.00 3.53
367 368 7.333528 TCATGAACTTGCCTAATATTCCAAC 57.666 36.000 0.00 0.00 0.00 3.77
368 369 6.889177 TCATGAACTTGCCTAATATTCCAACA 59.111 34.615 0.00 0.00 0.00 3.33
369 370 6.757897 TGAACTTGCCTAATATTCCAACAG 57.242 37.500 0.00 0.00 0.00 3.16
370 371 6.480763 TGAACTTGCCTAATATTCCAACAGA 58.519 36.000 0.00 0.00 0.00 3.41
371 372 7.118723 TGAACTTGCCTAATATTCCAACAGAT 58.881 34.615 0.00 0.00 0.00 2.90
372 373 7.283127 TGAACTTGCCTAATATTCCAACAGATC 59.717 37.037 0.00 0.00 0.00 2.75
373 374 6.064717 ACTTGCCTAATATTCCAACAGATCC 58.935 40.000 0.00 0.00 0.00 3.36
374 375 5.645056 TGCCTAATATTCCAACAGATCCA 57.355 39.130 0.00 0.00 0.00 3.41
375 376 5.376625 TGCCTAATATTCCAACAGATCCAC 58.623 41.667 0.00 0.00 0.00 4.02
376 377 4.452455 GCCTAATATTCCAACAGATCCACG 59.548 45.833 0.00 0.00 0.00 4.94
398 399 7.094291 CCACGGACCTGGTTGTAATTTTTATTA 60.094 37.037 0.00 0.00 0.00 0.98
399 400 7.751793 CACGGACCTGGTTGTAATTTTTATTAC 59.248 37.037 0.00 0.00 37.49 1.89
400 401 7.666804 ACGGACCTGGTTGTAATTTTTATTACT 59.333 33.333 0.00 0.00 37.76 2.24
401 402 8.517056 CGGACCTGGTTGTAATTTTTATTACTT 58.483 33.333 0.00 0.00 37.76 2.24
457 458 7.851822 TGAATAAATTGAAAGTTTCTCACGC 57.148 32.000 16.33 0.61 0.00 5.34
460 461 8.641499 AATAAATTGAAAGTTTCTCACGCAAA 57.359 26.923 16.33 1.41 0.00 3.68
461 462 6.959671 AAATTGAAAGTTTCTCACGCAAAA 57.040 29.167 16.33 0.72 0.00 2.44
462 463 6.959671 AATTGAAAGTTTCTCACGCAAAAA 57.040 29.167 16.33 0.04 0.00 1.94
463 464 6.573617 ATTGAAAGTTTCTCACGCAAAAAG 57.426 33.333 16.33 0.00 0.00 2.27
464 465 4.420168 TGAAAGTTTCTCACGCAAAAAGG 58.580 39.130 16.33 0.00 0.00 3.11
465 466 4.156922 TGAAAGTTTCTCACGCAAAAAGGA 59.843 37.500 16.33 0.00 0.00 3.36
466 467 4.712122 AAGTTTCTCACGCAAAAAGGAA 57.288 36.364 0.00 0.00 0.00 3.36
467 468 4.712122 AGTTTCTCACGCAAAAAGGAAA 57.288 36.364 0.00 0.00 0.00 3.13
536 541 2.357034 CGGAGACAACACGGGGTG 60.357 66.667 0.00 0.00 39.75 4.61
597 671 1.521423 GCTATCAAATTCGACGGACGG 59.479 52.381 0.00 0.00 42.82 4.79
610 684 2.797278 GGACGGCAGGGACATCGAT 61.797 63.158 0.00 0.00 0.00 3.59
612 686 2.029666 CGGCAGGGACATCGATCC 59.970 66.667 0.00 0.00 38.13 3.36
652 726 0.680061 CTATTCCCTACGGACCTGCC 59.320 60.000 0.00 0.00 38.14 4.85
658 732 1.079127 CTACGGACCTGCCACTTGG 60.079 63.158 0.00 0.00 35.94 3.61
697 781 8.836268 ACGTATTTTGTACTCCATTTACTCAA 57.164 30.769 0.00 0.00 0.00 3.02
709 796 6.841119 TCCATTTACTCAAACGATCACATTG 58.159 36.000 0.00 0.00 0.00 2.82
713 800 4.008074 ACTCAAACGATCACATTGGAGT 57.992 40.909 5.83 5.83 0.00 3.85
728 815 2.790433 TGGAGTGGTTAAAGCCATGAC 58.210 47.619 0.00 0.00 41.08 3.06
956 1043 1.337260 CGTCCCTCACTCACTTTCCAG 60.337 57.143 0.00 0.00 0.00 3.86
1065 1179 0.032952 CTTCCCTCGACGACAAACCA 59.967 55.000 0.00 0.00 0.00 3.67
1296 1428 4.694233 CTGCTGCTCACCGTGGCT 62.694 66.667 0.00 0.00 0.00 4.75
1419 1554 4.176752 CCTAGCAAGGGGGACGGC 62.177 72.222 0.00 0.00 39.48 5.68
1473 1608 0.895100 GCTTCACCAAGGACATGGCA 60.895 55.000 0.00 0.00 44.75 4.92
1713 1860 1.596934 GGAGACCGTGCTCAATGGA 59.403 57.895 4.46 0.00 38.47 3.41
1774 1921 7.085476 ACTTGATCCTCTCTATACTCTAGCA 57.915 40.000 0.00 0.00 0.00 3.49
1775 1922 7.698912 ACTTGATCCTCTCTATACTCTAGCAT 58.301 38.462 0.00 0.00 0.00 3.79
1776 1923 7.611467 ACTTGATCCTCTCTATACTCTAGCATG 59.389 40.741 0.00 0.00 0.00 4.06
1777 1924 7.264294 TGATCCTCTCTATACTCTAGCATGA 57.736 40.000 0.00 0.00 0.00 3.07
1778 1925 7.337938 TGATCCTCTCTATACTCTAGCATGAG 58.662 42.308 0.00 4.71 39.78 2.90
1791 1938 6.385467 ACTCTAGCATGAGTAAATCTTTCCCT 59.615 38.462 9.44 0.00 44.53 4.20
1792 1939 7.565398 ACTCTAGCATGAGTAAATCTTTCCCTA 59.435 37.037 9.44 0.00 44.53 3.53
1793 1940 8.319057 TCTAGCATGAGTAAATCTTTCCCTAA 57.681 34.615 0.00 0.00 0.00 2.69
1884 2032 0.513820 TTTCGTCCGTCGCCATTTTC 59.486 50.000 0.00 0.00 39.67 2.29
2005 2196 5.593679 TTCTGGAAATAAGGAGGAGTACG 57.406 43.478 0.00 0.00 0.00 3.67
2202 2413 4.911514 AATGTTTTAGAAACCGTGCACT 57.088 36.364 16.19 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.796796 GGTGCAGGATCGCAAAGAC 59.203 57.895 0.00 0.00 45.14 3.01
1 2 1.741401 CGGTGCAGGATCGCAAAGA 60.741 57.895 0.00 0.00 45.14 2.52
3 4 2.745884 CCGGTGCAGGATCGCAAA 60.746 61.111 0.00 0.00 45.14 3.68
6 7 4.899239 CTCCCGGTGCAGGATCGC 62.899 72.222 0.00 0.00 31.48 4.58
7 8 3.144120 CTCTCCCGGTGCAGGATCG 62.144 68.421 0.00 0.00 31.48 3.69
8 9 2.801631 CCTCTCCCGGTGCAGGATC 61.802 68.421 0.00 0.00 31.48 3.36
11 12 3.775654 GTCCTCTCCCGGTGCAGG 61.776 72.222 0.00 1.62 0.00 4.85
12 13 4.135153 CGTCCTCTCCCGGTGCAG 62.135 72.222 0.00 0.00 0.00 4.41
13 14 4.671590 TCGTCCTCTCCCGGTGCA 62.672 66.667 0.00 0.00 0.00 4.57
14 15 2.240162 AATTCGTCCTCTCCCGGTGC 62.240 60.000 0.00 0.00 0.00 5.01
15 16 1.067212 CTAATTCGTCCTCTCCCGGTG 59.933 57.143 0.00 0.00 0.00 4.94
16 17 1.400737 CTAATTCGTCCTCTCCCGGT 58.599 55.000 0.00 0.00 0.00 5.28
17 18 0.674534 CCTAATTCGTCCTCTCCCGG 59.325 60.000 0.00 0.00 0.00 5.73
18 19 1.400737 ACCTAATTCGTCCTCTCCCG 58.599 55.000 0.00 0.00 0.00 5.14
19 20 3.908643 AAACCTAATTCGTCCTCTCCC 57.091 47.619 0.00 0.00 0.00 4.30
20 21 4.395231 CCAAAAACCTAATTCGTCCTCTCC 59.605 45.833 0.00 0.00 0.00 3.71
21 22 4.395231 CCCAAAAACCTAATTCGTCCTCTC 59.605 45.833 0.00 0.00 0.00 3.20
22 23 4.042435 TCCCAAAAACCTAATTCGTCCTCT 59.958 41.667 0.00 0.00 0.00 3.69
23 24 4.329392 TCCCAAAAACCTAATTCGTCCTC 58.671 43.478 0.00 0.00 0.00 3.71
24 25 4.376225 TCCCAAAAACCTAATTCGTCCT 57.624 40.909 0.00 0.00 0.00 3.85
25 26 4.617530 GCTTCCCAAAAACCTAATTCGTCC 60.618 45.833 0.00 0.00 0.00 4.79
26 27 4.482386 GCTTCCCAAAAACCTAATTCGTC 58.518 43.478 0.00 0.00 0.00 4.20
27 28 3.057806 CGCTTCCCAAAAACCTAATTCGT 60.058 43.478 0.00 0.00 0.00 3.85
28 29 3.057806 ACGCTTCCCAAAAACCTAATTCG 60.058 43.478 0.00 0.00 0.00 3.34
29 30 4.514781 ACGCTTCCCAAAAACCTAATTC 57.485 40.909 0.00 0.00 0.00 2.17
30 31 4.100344 ACAACGCTTCCCAAAAACCTAATT 59.900 37.500 0.00 0.00 0.00 1.40
31 32 3.639561 ACAACGCTTCCCAAAAACCTAAT 59.360 39.130 0.00 0.00 0.00 1.73
32 33 3.025262 ACAACGCTTCCCAAAAACCTAA 58.975 40.909 0.00 0.00 0.00 2.69
33 34 2.359531 CACAACGCTTCCCAAAAACCTA 59.640 45.455 0.00 0.00 0.00 3.08
34 35 1.136110 CACAACGCTTCCCAAAAACCT 59.864 47.619 0.00 0.00 0.00 3.50
35 36 1.566404 CACAACGCTTCCCAAAAACC 58.434 50.000 0.00 0.00 0.00 3.27
36 37 0.927537 GCACAACGCTTCCCAAAAAC 59.072 50.000 0.00 0.00 37.77 2.43
37 38 0.526524 CGCACAACGCTTCCCAAAAA 60.527 50.000 0.00 0.00 39.08 1.94
38 39 1.064946 CGCACAACGCTTCCCAAAA 59.935 52.632 0.00 0.00 39.08 2.44
39 40 2.718731 CGCACAACGCTTCCCAAA 59.281 55.556 0.00 0.00 39.08 3.28
48 49 4.415501 GAGCAGTCGCGCACAACG 62.416 66.667 8.75 0.57 45.49 4.10
49 50 3.337889 TGAGCAGTCGCGCACAAC 61.338 61.111 8.75 1.77 43.53 3.32
53 54 1.497278 GAATTTGAGCAGTCGCGCA 59.503 52.632 8.75 0.00 46.96 6.09
54 55 1.578618 CGAATTTGAGCAGTCGCGC 60.579 57.895 0.00 0.00 45.49 6.86
55 56 0.246912 GACGAATTTGAGCAGTCGCG 60.247 55.000 0.00 0.00 45.49 5.87
56 57 0.790207 TGACGAATTTGAGCAGTCGC 59.210 50.000 0.00 0.00 36.99 5.19
57 58 2.667969 TGATGACGAATTTGAGCAGTCG 59.332 45.455 0.00 0.00 39.37 4.18
58 59 3.996032 GTGATGACGAATTTGAGCAGTC 58.004 45.455 0.00 0.00 0.00 3.51
71 72 0.388134 AAAGACGACCCGTGATGACG 60.388 55.000 0.00 0.00 41.37 4.35
72 73 1.347320 GAAAGACGACCCGTGATGAC 58.653 55.000 0.00 0.00 41.37 3.06
73 74 0.109458 CGAAAGACGACCCGTGATGA 60.109 55.000 0.00 0.00 45.77 2.92
74 75 0.388134 ACGAAAGACGACCCGTGATG 60.388 55.000 0.00 0.00 45.77 3.07
75 76 0.109412 GACGAAAGACGACCCGTGAT 60.109 55.000 0.00 0.00 45.77 3.06
76 77 1.283793 GACGAAAGACGACCCGTGA 59.716 57.895 0.00 0.00 45.77 4.35
77 78 3.838468 GACGAAAGACGACCCGTG 58.162 61.111 0.00 0.00 45.77 4.94
82 83 1.050767 CGACTTGGACGAAAGACGAC 58.949 55.000 13.18 0.00 44.41 4.34
83 84 0.039798 CCGACTTGGACGAAAGACGA 60.040 55.000 17.42 0.00 44.41 4.20
84 85 1.007336 CCCGACTTGGACGAAAGACG 61.007 60.000 12.13 12.13 42.37 4.18
85 86 1.289800 GCCCGACTTGGACGAAAGAC 61.290 60.000 0.00 0.00 42.00 3.01
86 87 1.005394 GCCCGACTTGGACGAAAGA 60.005 57.895 0.00 0.00 42.00 2.52
87 88 2.380410 CGCCCGACTTGGACGAAAG 61.380 63.158 0.00 0.00 42.00 2.62
88 89 2.356553 CGCCCGACTTGGACGAAA 60.357 61.111 0.00 0.00 42.00 3.46
89 90 4.367023 CCGCCCGACTTGGACGAA 62.367 66.667 0.00 0.00 42.00 3.85
94 95 4.077184 TAGCACCGCCCGACTTGG 62.077 66.667 0.00 0.00 37.55 3.61
95 96 2.813908 GTAGCACCGCCCGACTTG 60.814 66.667 0.00 0.00 0.00 3.16
96 97 2.995574 AGTAGCACCGCCCGACTT 60.996 61.111 0.00 0.00 0.00 3.01
97 98 3.450115 GAGTAGCACCGCCCGACT 61.450 66.667 0.00 0.00 0.00 4.18
98 99 2.955751 GATGAGTAGCACCGCCCGAC 62.956 65.000 0.00 0.00 0.00 4.79
99 100 2.758327 ATGAGTAGCACCGCCCGA 60.758 61.111 0.00 0.00 0.00 5.14
100 101 2.279517 GATGAGTAGCACCGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
101 102 2.279517 CGATGAGTAGCACCGCCC 60.280 66.667 0.00 0.00 0.00 6.13
102 103 1.589196 GACGATGAGTAGCACCGCC 60.589 63.158 0.00 0.00 0.00 6.13
103 104 1.939785 CGACGATGAGTAGCACCGC 60.940 63.158 0.00 0.00 0.00 5.68
104 105 0.654160 TACGACGATGAGTAGCACCG 59.346 55.000 0.00 0.00 0.00 4.94
105 106 3.242969 TGAATACGACGATGAGTAGCACC 60.243 47.826 0.00 0.00 0.00 5.01
106 107 3.948851 TGAATACGACGATGAGTAGCAC 58.051 45.455 0.00 0.00 0.00 4.40
107 108 4.610680 CGATGAATACGACGATGAGTAGCA 60.611 45.833 0.00 0.00 0.00 3.49
108 109 3.841317 CGATGAATACGACGATGAGTAGC 59.159 47.826 0.00 0.00 0.00 3.58
109 110 3.841317 GCGATGAATACGACGATGAGTAG 59.159 47.826 0.00 0.00 0.00 2.57
110 111 3.364664 GGCGATGAATACGACGATGAGTA 60.365 47.826 0.00 0.00 0.00 2.59
111 112 2.604855 GGCGATGAATACGACGATGAGT 60.605 50.000 0.00 0.00 0.00 3.41
112 113 1.979469 GGCGATGAATACGACGATGAG 59.021 52.381 0.00 0.00 0.00 2.90
113 114 2.046283 GGCGATGAATACGACGATGA 57.954 50.000 0.00 0.00 0.00 2.92
118 119 1.121240 CTGACGGCGATGAATACGAC 58.879 55.000 16.62 0.00 35.25 4.34
119 120 0.594028 GCTGACGGCGATGAATACGA 60.594 55.000 16.62 0.00 0.00 3.43
120 121 0.869880 TGCTGACGGCGATGAATACG 60.870 55.000 16.62 0.00 45.43 3.06
121 122 0.855349 CTGCTGACGGCGATGAATAC 59.145 55.000 16.62 0.00 45.43 1.89
122 123 0.875908 GCTGCTGACGGCGATGAATA 60.876 55.000 16.62 0.00 45.43 1.75
123 124 2.176273 GCTGCTGACGGCGATGAAT 61.176 57.895 16.62 0.00 45.43 2.57
124 125 2.815211 GCTGCTGACGGCGATGAA 60.815 61.111 16.62 0.00 45.43 2.57
131 132 1.213733 CGATGATCTGCTGCTGACGG 61.214 60.000 11.54 0.00 0.00 4.79
132 133 1.819226 GCGATGATCTGCTGCTGACG 61.819 60.000 11.54 11.31 0.00 4.35
133 134 1.497223 GGCGATGATCTGCTGCTGAC 61.497 60.000 11.54 6.74 0.00 3.51
134 135 1.227468 GGCGATGATCTGCTGCTGA 60.227 57.895 11.69 11.69 0.00 4.26
135 136 1.093496 TTGGCGATGATCTGCTGCTG 61.093 55.000 0.00 0.00 0.00 4.41
136 137 1.094073 GTTGGCGATGATCTGCTGCT 61.094 55.000 0.00 0.00 0.00 4.24
137 138 1.354506 GTTGGCGATGATCTGCTGC 59.645 57.895 8.62 0.00 0.00 5.25
138 139 1.263484 GATGTTGGCGATGATCTGCTG 59.737 52.381 8.62 0.00 0.00 4.41
139 140 1.134310 TGATGTTGGCGATGATCTGCT 60.134 47.619 8.62 0.00 0.00 4.24
140 141 1.302366 TGATGTTGGCGATGATCTGC 58.698 50.000 0.00 1.58 0.00 4.26
141 142 3.135994 TGATGATGTTGGCGATGATCTG 58.864 45.455 0.00 0.00 0.00 2.90
142 143 3.480505 TGATGATGTTGGCGATGATCT 57.519 42.857 0.00 0.00 0.00 2.75
143 144 3.749609 TGATGATGATGTTGGCGATGATC 59.250 43.478 0.00 0.00 0.00 2.92
144 145 3.746940 TGATGATGATGTTGGCGATGAT 58.253 40.909 0.00 0.00 0.00 2.45
145 146 3.196939 TGATGATGATGTTGGCGATGA 57.803 42.857 0.00 0.00 0.00 2.92
146 147 3.065648 TGTTGATGATGATGTTGGCGATG 59.934 43.478 0.00 0.00 0.00 3.84
147 148 3.065786 GTGTTGATGATGATGTTGGCGAT 59.934 43.478 0.00 0.00 0.00 4.58
148 149 2.419673 GTGTTGATGATGATGTTGGCGA 59.580 45.455 0.00 0.00 0.00 5.54
149 150 2.421073 AGTGTTGATGATGATGTTGGCG 59.579 45.455 0.00 0.00 0.00 5.69
150 151 3.192001 ACAGTGTTGATGATGATGTTGGC 59.808 43.478 0.00 0.00 0.00 4.52
151 152 4.436451 CGACAGTGTTGATGATGATGTTGG 60.436 45.833 4.29 0.00 0.00 3.77
152 153 4.644954 CGACAGTGTTGATGATGATGTTG 58.355 43.478 4.29 0.00 0.00 3.33
153 154 3.125829 GCGACAGTGTTGATGATGATGTT 59.874 43.478 15.07 0.00 0.00 2.71
154 155 2.674852 GCGACAGTGTTGATGATGATGT 59.325 45.455 15.07 0.00 0.00 3.06
155 156 2.674357 TGCGACAGTGTTGATGATGATG 59.326 45.455 15.07 0.00 0.00 3.07
156 157 2.674852 GTGCGACAGTGTTGATGATGAT 59.325 45.455 15.07 0.00 0.00 2.45
157 158 2.068519 GTGCGACAGTGTTGATGATGA 58.931 47.619 15.07 0.00 0.00 2.92
158 159 1.129251 GGTGCGACAGTGTTGATGATG 59.871 52.381 15.07 0.00 0.00 3.07
159 160 1.442769 GGTGCGACAGTGTTGATGAT 58.557 50.000 15.07 0.00 0.00 2.45
160 161 0.602638 GGGTGCGACAGTGTTGATGA 60.603 55.000 15.07 0.00 0.00 2.92
161 162 0.884259 TGGGTGCGACAGTGTTGATG 60.884 55.000 15.07 0.00 0.00 3.07
162 163 0.036732 ATGGGTGCGACAGTGTTGAT 59.963 50.000 15.07 0.00 0.00 2.57
163 164 0.682292 TATGGGTGCGACAGTGTTGA 59.318 50.000 15.07 0.00 0.00 3.18
164 165 1.518325 TTATGGGTGCGACAGTGTTG 58.482 50.000 6.11 6.11 0.00 3.33
165 166 2.489938 ATTATGGGTGCGACAGTGTT 57.510 45.000 0.00 0.00 0.00 3.32
166 167 2.741878 GCTATTATGGGTGCGACAGTGT 60.742 50.000 0.00 0.00 0.00 3.55
167 168 1.867233 GCTATTATGGGTGCGACAGTG 59.133 52.381 0.00 0.00 0.00 3.66
168 169 1.762957 AGCTATTATGGGTGCGACAGT 59.237 47.619 0.00 0.00 0.00 3.55
169 170 2.533266 AGCTATTATGGGTGCGACAG 57.467 50.000 0.00 0.00 0.00 3.51
170 171 3.724374 GTTAGCTATTATGGGTGCGACA 58.276 45.455 0.00 0.00 0.00 4.35
171 172 2.729882 CGTTAGCTATTATGGGTGCGAC 59.270 50.000 0.00 0.00 0.00 5.19
172 173 2.624364 TCGTTAGCTATTATGGGTGCGA 59.376 45.455 0.00 5.56 0.00 5.10
173 174 3.021269 TCGTTAGCTATTATGGGTGCG 57.979 47.619 0.00 0.00 0.00 5.34
174 175 4.566004 TGATCGTTAGCTATTATGGGTGC 58.434 43.478 0.00 0.00 0.00 5.01
175 176 5.784177 ACTGATCGTTAGCTATTATGGGTG 58.216 41.667 0.00 0.00 0.00 4.61
176 177 6.349115 CGTACTGATCGTTAGCTATTATGGGT 60.349 42.308 0.00 0.00 0.00 4.51
177 178 6.028368 CGTACTGATCGTTAGCTATTATGGG 58.972 44.000 0.00 0.00 0.00 4.00
178 179 6.609533 ACGTACTGATCGTTAGCTATTATGG 58.390 40.000 0.00 0.00 38.38 2.74
179 180 6.741811 GGACGTACTGATCGTTAGCTATTATG 59.258 42.308 0.00 0.00 41.64 1.90
180 181 6.429078 TGGACGTACTGATCGTTAGCTATTAT 59.571 38.462 0.00 0.00 41.64 1.28
181 182 5.759763 TGGACGTACTGATCGTTAGCTATTA 59.240 40.000 0.00 0.00 41.64 0.98
182 183 4.577693 TGGACGTACTGATCGTTAGCTATT 59.422 41.667 0.00 0.00 41.64 1.73
183 184 4.132336 TGGACGTACTGATCGTTAGCTAT 58.868 43.478 0.00 0.00 41.64 2.97
184 185 3.534554 TGGACGTACTGATCGTTAGCTA 58.465 45.455 0.00 0.00 41.64 3.32
185 186 2.362736 TGGACGTACTGATCGTTAGCT 58.637 47.619 0.00 0.00 41.64 3.32
186 187 2.838386 TGGACGTACTGATCGTTAGC 57.162 50.000 0.00 0.00 41.64 3.09
187 188 4.087510 TGTTGGACGTACTGATCGTTAG 57.912 45.455 0.00 0.00 41.64 2.34
188 189 4.439153 GGATGTTGGACGTACTGATCGTTA 60.439 45.833 0.00 0.00 41.64 3.18
189 190 3.508762 GATGTTGGACGTACTGATCGTT 58.491 45.455 0.00 0.00 41.64 3.85
190 191 2.159282 GGATGTTGGACGTACTGATCGT 60.159 50.000 0.00 0.00 44.27 3.73
191 192 2.159296 TGGATGTTGGACGTACTGATCG 60.159 50.000 0.00 0.00 0.00 3.69
192 193 3.119101 AGTGGATGTTGGACGTACTGATC 60.119 47.826 0.00 0.00 0.00 2.92
193 194 2.832129 AGTGGATGTTGGACGTACTGAT 59.168 45.455 0.00 0.00 0.00 2.90
194 195 2.029380 CAGTGGATGTTGGACGTACTGA 60.029 50.000 0.00 0.00 36.96 3.41
195 196 2.288825 ACAGTGGATGTTGGACGTACTG 60.289 50.000 0.00 3.43 39.96 2.74
196 197 1.968493 ACAGTGGATGTTGGACGTACT 59.032 47.619 0.00 0.00 39.96 2.73
197 198 2.450609 ACAGTGGATGTTGGACGTAC 57.549 50.000 0.00 0.00 39.96 3.67
206 207 3.777106 ACAGACATGAACAGTGGATGT 57.223 42.857 0.00 4.81 46.97 3.06
207 208 4.758674 AGAAACAGACATGAACAGTGGATG 59.241 41.667 0.00 0.00 0.00 3.51
208 209 4.978099 AGAAACAGACATGAACAGTGGAT 58.022 39.130 0.00 0.00 0.00 3.41
209 210 4.422073 AGAAACAGACATGAACAGTGGA 57.578 40.909 0.00 0.00 0.00 4.02
210 211 5.056480 TGTAGAAACAGACATGAACAGTGG 58.944 41.667 0.00 0.00 0.00 4.00
224 225 6.218019 ACACGTAACAATAGCTGTAGAAACA 58.782 36.000 0.00 0.00 37.23 2.83
225 226 6.701432 ACACGTAACAATAGCTGTAGAAAC 57.299 37.500 0.00 0.00 37.23 2.78
226 227 7.569297 CAAACACGTAACAATAGCTGTAGAAA 58.431 34.615 0.00 0.00 37.23 2.52
227 228 6.347079 GCAAACACGTAACAATAGCTGTAGAA 60.347 38.462 0.00 0.00 37.23 2.10
228 229 5.119588 GCAAACACGTAACAATAGCTGTAGA 59.880 40.000 0.00 0.00 37.23 2.59
229 230 5.120208 AGCAAACACGTAACAATAGCTGTAG 59.880 40.000 0.00 0.00 37.23 2.74
230 231 4.992319 AGCAAACACGTAACAATAGCTGTA 59.008 37.500 0.00 0.00 37.23 2.74
231 232 3.813166 AGCAAACACGTAACAATAGCTGT 59.187 39.130 0.00 0.00 41.27 4.40
232 233 4.151070 CAGCAAACACGTAACAATAGCTG 58.849 43.478 0.00 0.00 40.57 4.24
233 234 3.364964 GCAGCAAACACGTAACAATAGCT 60.365 43.478 0.00 0.00 0.00 3.32
234 235 2.908626 GCAGCAAACACGTAACAATAGC 59.091 45.455 0.00 0.00 0.00 2.97
235 236 4.151070 CAGCAGCAAACACGTAACAATAG 58.849 43.478 0.00 0.00 0.00 1.73
236 237 3.562141 ACAGCAGCAAACACGTAACAATA 59.438 39.130 0.00 0.00 0.00 1.90
237 238 2.357637 ACAGCAGCAAACACGTAACAAT 59.642 40.909 0.00 0.00 0.00 2.71
238 239 1.740585 ACAGCAGCAAACACGTAACAA 59.259 42.857 0.00 0.00 0.00 2.83
239 240 1.374560 ACAGCAGCAAACACGTAACA 58.625 45.000 0.00 0.00 0.00 2.41
240 241 2.468532 AACAGCAGCAAACACGTAAC 57.531 45.000 0.00 0.00 0.00 2.50
241 242 3.608241 GCATAACAGCAGCAAACACGTAA 60.608 43.478 0.00 0.00 0.00 3.18
242 243 2.095969 GCATAACAGCAGCAAACACGTA 60.096 45.455 0.00 0.00 0.00 3.57
243 244 1.334960 GCATAACAGCAGCAAACACGT 60.335 47.619 0.00 0.00 0.00 4.49
244 245 1.330306 GCATAACAGCAGCAAACACG 58.670 50.000 0.00 0.00 0.00 4.49
245 246 2.420628 TGCATAACAGCAGCAAACAC 57.579 45.000 0.00 0.00 40.11 3.32
263 264 6.369005 CAAACTAGAAGAACAGCAAGACATG 58.631 40.000 0.00 0.00 0.00 3.21
264 265 5.049129 GCAAACTAGAAGAACAGCAAGACAT 60.049 40.000 0.00 0.00 0.00 3.06
265 266 4.273480 GCAAACTAGAAGAACAGCAAGACA 59.727 41.667 0.00 0.00 0.00 3.41
266 267 4.513318 AGCAAACTAGAAGAACAGCAAGAC 59.487 41.667 0.00 0.00 0.00 3.01
267 268 4.708177 AGCAAACTAGAAGAACAGCAAGA 58.292 39.130 0.00 0.00 0.00 3.02
280 281 7.199541 AGCATGCAATAATCTAGCAAACTAG 57.800 36.000 21.98 0.00 46.30 2.57
281 282 7.933577 ACTAGCATGCAATAATCTAGCAAACTA 59.066 33.333 21.98 0.00 42.15 2.24
282 283 6.769822 ACTAGCATGCAATAATCTAGCAAACT 59.230 34.615 21.98 0.00 42.15 2.66
283 284 6.963796 ACTAGCATGCAATAATCTAGCAAAC 58.036 36.000 21.98 0.00 42.15 2.93
284 285 8.853077 ATACTAGCATGCAATAATCTAGCAAA 57.147 30.769 21.98 1.19 42.15 3.68
285 286 8.316946 AGATACTAGCATGCAATAATCTAGCAA 58.683 33.333 21.98 3.56 42.15 3.91
286 287 7.845037 AGATACTAGCATGCAATAATCTAGCA 58.155 34.615 21.98 1.80 43.14 3.49
287 288 8.196771 AGAGATACTAGCATGCAATAATCTAGC 58.803 37.037 21.98 10.95 32.23 3.42
290 291 8.814931 AGAAGAGATACTAGCATGCAATAATCT 58.185 33.333 21.98 20.35 0.00 2.40
293 294 9.083422 ACTAGAAGAGATACTAGCATGCAATAA 57.917 33.333 21.98 2.60 39.47 1.40
294 295 8.642935 ACTAGAAGAGATACTAGCATGCAATA 57.357 34.615 21.98 9.23 39.47 1.90
295 296 7.232330 TGACTAGAAGAGATACTAGCATGCAAT 59.768 37.037 21.98 7.51 39.47 3.56
296 297 6.547510 TGACTAGAAGAGATACTAGCATGCAA 59.452 38.462 21.98 2.20 39.47 4.08
297 298 6.064717 TGACTAGAAGAGATACTAGCATGCA 58.935 40.000 21.98 5.01 39.47 3.96
298 299 6.567687 TGACTAGAAGAGATACTAGCATGC 57.432 41.667 10.51 10.51 39.47 4.06
299 300 8.334263 TCATGACTAGAAGAGATACTAGCATG 57.666 38.462 19.52 19.52 42.96 4.06
300 301 8.932434 TTCATGACTAGAAGAGATACTAGCAT 57.068 34.615 0.00 0.00 39.47 3.79
301 302 8.932434 ATTCATGACTAGAAGAGATACTAGCA 57.068 34.615 0.00 0.00 39.47 3.49
328 329 9.807649 GCAAGTTCATGATTAATTCCAGTAAAT 57.192 29.630 0.00 0.00 0.00 1.40
329 330 8.250332 GGCAAGTTCATGATTAATTCCAGTAAA 58.750 33.333 0.00 0.00 0.00 2.01
330 331 7.615365 AGGCAAGTTCATGATTAATTCCAGTAA 59.385 33.333 0.00 0.00 0.00 2.24
331 332 7.118723 AGGCAAGTTCATGATTAATTCCAGTA 58.881 34.615 0.00 0.00 0.00 2.74
332 333 5.954150 AGGCAAGTTCATGATTAATTCCAGT 59.046 36.000 0.00 0.00 0.00 4.00
333 334 6.461110 AGGCAAGTTCATGATTAATTCCAG 57.539 37.500 0.00 0.00 0.00 3.86
334 335 7.953005 TTAGGCAAGTTCATGATTAATTCCA 57.047 32.000 0.00 0.00 0.00 3.53
339 340 9.639563 TGGAATATTAGGCAAGTTCATGATTAA 57.360 29.630 0.00 0.00 0.00 1.40
340 341 9.639563 TTGGAATATTAGGCAAGTTCATGATTA 57.360 29.630 0.00 0.00 0.00 1.75
341 342 8.416329 GTTGGAATATTAGGCAAGTTCATGATT 58.584 33.333 0.00 0.00 0.00 2.57
342 343 7.560991 TGTTGGAATATTAGGCAAGTTCATGAT 59.439 33.333 0.00 0.00 0.00 2.45
343 344 6.889177 TGTTGGAATATTAGGCAAGTTCATGA 59.111 34.615 0.00 0.00 0.00 3.07
344 345 7.067372 TCTGTTGGAATATTAGGCAAGTTCATG 59.933 37.037 0.00 0.00 0.00 3.07
345 346 7.118723 TCTGTTGGAATATTAGGCAAGTTCAT 58.881 34.615 0.00 0.00 0.00 2.57
346 347 6.480763 TCTGTTGGAATATTAGGCAAGTTCA 58.519 36.000 0.00 0.00 0.00 3.18
347 348 7.255277 GGATCTGTTGGAATATTAGGCAAGTTC 60.255 40.741 0.00 0.00 0.00 3.01
348 349 6.547510 GGATCTGTTGGAATATTAGGCAAGTT 59.452 38.462 0.00 0.00 0.00 2.66
349 350 6.064717 GGATCTGTTGGAATATTAGGCAAGT 58.935 40.000 0.00 0.00 0.00 3.16
350 351 6.016777 GTGGATCTGTTGGAATATTAGGCAAG 60.017 42.308 0.00 0.00 0.00 4.01
351 352 5.827797 GTGGATCTGTTGGAATATTAGGCAA 59.172 40.000 0.00 0.00 0.00 4.52
352 353 5.376625 GTGGATCTGTTGGAATATTAGGCA 58.623 41.667 0.00 0.00 0.00 4.75
353 354 4.452455 CGTGGATCTGTTGGAATATTAGGC 59.548 45.833 0.00 0.00 0.00 3.93
354 355 4.997395 CCGTGGATCTGTTGGAATATTAGG 59.003 45.833 0.00 0.00 0.00 2.69
355 356 5.696724 GTCCGTGGATCTGTTGGAATATTAG 59.303 44.000 0.00 0.00 0.00 1.73
356 357 5.454187 GGTCCGTGGATCTGTTGGAATATTA 60.454 44.000 0.00 0.00 0.00 0.98
357 358 4.451900 GTCCGTGGATCTGTTGGAATATT 58.548 43.478 0.00 0.00 0.00 1.28
358 359 3.181454 GGTCCGTGGATCTGTTGGAATAT 60.181 47.826 0.00 0.00 0.00 1.28
359 360 2.169769 GGTCCGTGGATCTGTTGGAATA 59.830 50.000 0.00 0.00 0.00 1.75
360 361 1.065418 GGTCCGTGGATCTGTTGGAAT 60.065 52.381 0.00 0.00 0.00 3.01
361 362 0.323629 GGTCCGTGGATCTGTTGGAA 59.676 55.000 0.00 0.00 0.00 3.53
362 363 0.544357 AGGTCCGTGGATCTGTTGGA 60.544 55.000 0.00 0.00 33.77 3.53
363 364 0.391661 CAGGTCCGTGGATCTGTTGG 60.392 60.000 19.08 0.00 45.53 3.77
364 365 3.143675 CAGGTCCGTGGATCTGTTG 57.856 57.895 19.08 0.00 45.53 3.33
368 369 0.836400 ACAACCAGGTCCGTGGATCT 60.836 55.000 12.65 0.00 40.44 2.75
369 370 0.899720 TACAACCAGGTCCGTGGATC 59.100 55.000 12.65 0.00 40.44 3.36
370 371 1.354101 TTACAACCAGGTCCGTGGAT 58.646 50.000 12.65 0.00 40.44 3.41
371 372 1.354101 ATTACAACCAGGTCCGTGGA 58.646 50.000 12.65 0.00 40.44 4.02
372 373 2.194201 AATTACAACCAGGTCCGTGG 57.806 50.000 4.53 4.53 44.01 4.94
373 374 4.577834 AAAAATTACAACCAGGTCCGTG 57.422 40.909 0.00 0.00 0.00 4.94
374 375 6.904463 AATAAAAATTACAACCAGGTCCGT 57.096 33.333 0.00 0.00 0.00 4.69
375 376 8.047413 AGTAATAAAAATTACAACCAGGTCCG 57.953 34.615 10.08 0.00 38.97 4.79
376 377 9.850628 GAAGTAATAAAAATTACAACCAGGTCC 57.149 33.333 10.08 0.00 38.97 4.46
398 399 8.896744 CATGGTAATACAAATGACATCAGAAGT 58.103 33.333 0.00 0.00 0.00 3.01
399 400 9.112725 TCATGGTAATACAAATGACATCAGAAG 57.887 33.333 4.53 0.00 0.00 2.85
400 401 9.631257 ATCATGGTAATACAAATGACATCAGAA 57.369 29.630 9.30 0.00 32.18 3.02
401 402 9.631257 AATCATGGTAATACAAATGACATCAGA 57.369 29.630 9.30 0.00 32.18 3.27
431 432 8.578769 GCGTGAGAAACTTTCAATTTATTCATC 58.421 33.333 4.34 0.00 0.00 2.92
439 440 6.035975 CCTTTTTGCGTGAGAAACTTTCAATT 59.964 34.615 4.34 0.00 0.00 2.32
441 442 4.862018 CCTTTTTGCGTGAGAAACTTTCAA 59.138 37.500 4.34 0.00 0.00 2.69
480 482 7.425224 TCTATCTTCTTTCTTAGGGGAACTG 57.575 40.000 0.00 0.00 0.00 3.16
536 541 3.568743 TTGTGACGTGCCGTGTGC 61.569 61.111 4.94 0.00 41.37 4.57
597 671 0.876342 GTTCGGATCGATGTCCCTGC 60.876 60.000 0.54 0.00 35.23 4.85
610 684 1.577922 CTTCGTCCTCACGTTCGGA 59.422 57.895 0.00 0.00 46.76 4.55
612 686 0.454620 CTCCTTCGTCCTCACGTTCG 60.455 60.000 0.00 0.00 46.76 3.95
658 732 9.839589 GTACAAAATACGTATGTACTTGTATGC 57.160 33.333 22.13 13.71 43.71 3.14
674 758 9.537848 CGTTTGAGTAAATGGAGTACAAAATAC 57.462 33.333 0.00 0.00 0.00 1.89
697 781 2.859165 ACCACTCCAATGTGATCGTT 57.141 45.000 0.00 0.00 40.12 3.85
709 796 2.790433 TGTCATGGCTTTAACCACTCC 58.210 47.619 0.00 0.00 44.17 3.85
713 800 4.832266 AGTTGATTGTCATGGCTTTAACCA 59.168 37.500 0.00 0.00 45.82 3.67
728 815 5.171337 GCGCGGTTATTTTATCAGTTGATTG 59.829 40.000 8.83 0.00 36.05 2.67
956 1043 0.528684 GGCTGGTGATCGAGCTGTAC 60.529 60.000 0.90 0.00 43.33 2.90
1058 1172 2.030562 CCTCGTCCGCTGGTTTGT 59.969 61.111 0.00 0.00 0.00 2.83
1296 1428 2.443016 GGGTTGGGGTTGTGCACA 60.443 61.111 17.42 17.42 0.00 4.57
1419 1554 2.163390 CATCTCCAGCTGCACGACG 61.163 63.158 8.66 0.00 0.00 5.12
1473 1608 2.363680 CTCGATGTCCCTAATCAGCTGT 59.636 50.000 14.67 0.00 0.00 4.40
1482 1617 2.520982 CCGGCCTCGATGTCCCTA 60.521 66.667 0.00 0.00 39.00 3.53
1509 1644 4.988598 CTGGCGTTGGCGTCCAGT 62.989 66.667 16.38 0.00 46.81 4.00
1549 1684 1.165907 TTGAGCTTGAACACGCCCAG 61.166 55.000 0.00 0.00 0.00 4.45
1700 1847 0.103026 TCGAGATCCATTGAGCACGG 59.897 55.000 2.38 0.00 0.00 4.94
1713 1860 6.161855 TGCACCATATAAGAAACTCGAGAT 57.838 37.500 21.68 3.75 0.00 2.75
2005 2196 4.561105 CGGAGAGGAGCATATAAAAGGTC 58.439 47.826 0.00 0.00 0.00 3.85
2202 2413 1.980765 CTCATGGGCCAGCCTAATAGA 59.019 52.381 13.78 2.19 36.10 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.