AutoCloner

Multiple sequence alignment - TraesCS7D01G259800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G259800	chr7D	100.000	2684	0	0	529	3212	235482131	235479448	0.000000e+00	4957
1	TraesCS7D01G259800	chr7D	99.060	851	7	1	2363	3212	8095455	8096305	0.000000e+00	1526
2	TraesCS7D01G259800	chr7D	100.000	363	0	0	1	363	235482659	235482297	0.000000e+00	671
3	TraesCS7D01G259800	chr7D	97.619	252	6	0	529	780	235491956	235492207	1.770000e-117	433
4	TraesCS7D01G259800	chr7D	89.170	277	28	2	529	803	396105108	396104832	8.530000e-91	344
5	TraesCS7D01G259800	chrUn	97.101	1587	36	3	781	2363	321241017	321242597	0.000000e+00	2667
6	TraesCS7D01G259800	chrUn	97.101	1587	36	4	781	2363	322422971	322421391	0.000000e+00	2667
7	TraesCS7D01G259800	chr7A	97.101	1587	36	4	781	2363	250605598	250604018	0.000000e+00	2667
8	TraesCS7D01G259800	chr7A	92.549	859	53	6	2363	3212	653908080	653907224	0.000000e+00	1221
9	TraesCS7D01G259800	chr7B	96.734	1592	41	4	781	2363	211597061	211595472	0.000000e+00	2641
10	TraesCS7D01G259800	chr3A	95.349	860	29	6	2363	3212	657308936	657308078	0.000000e+00	1356
11	TraesCS7D01G259800	chr3D	94.712	851	12	5	2364	3212	178589083	178588264	0.000000e+00	1291
12	TraesCS7D01G259800	chr3D	98.901	364	3	1	1	363	10375215	10375578	0.000000e+00	649
13	TraesCS7D01G259800	chr3D	98.347	363	6	0	1	363	159653561	159653923	3.490000e-179	638
14	TraesCS7D01G259800	chr3D	97.222	252	7	0	529	780	471820692	471820943	8.230000e-116	427
15	TraesCS7D01G259800	chr3D	87.861	173	17	4	2639	2811	87926168	87926000	1.950000e-47	200
16	TraesCS7D01G259800	chr2D	99.174	363	3	0	1	363	372226481	372226119	0.000000e+00	654
17	TraesCS7D01G259800	chr2D	98.901	364	3	1	1	363	50054727	50054364	0.000000e+00	649
18	TraesCS7D01G259800	chr2D	98.626	364	4	1	1	363	8633963	8634326	0.000000e+00	643
19	TraesCS7D01G259800	chr2D	98.347	363	6	0	1	363	258810046	258809684	3.490000e-179	638
20	TraesCS7D01G259800	chr2D	96.094	256	10	0	529	784	181943655	181943910	4.960000e-113	418
21	TraesCS7D01G259800	chr2D	82.237	152	23	3	2362	2510	423000020	422999870	9.350000e-26	128
22	TraesCS7D01G259800	chr6D	98.898	363	4	0	1	363	114247345	114247707	0.000000e+00	649
23	TraesCS7D01G259800	chr6D	96.825	252	8	0	529	780	39706560	39706309	3.830000e-114	422
24	TraesCS7D01G259800	chr6D	96.443	253	9	0	529	781	114247895	114248147	4.960000e-113	418
25	TraesCS7D01G259800	chr6D	84.314	153	20	3	2361	2510	36251908	36251757	2.580000e-31	147
26	TraesCS7D01G259800	chr5D	98.623	363	5	0	1	363	64252499	64252861	0.000000e+00	643
27	TraesCS7D01G259800	chr5D	97.619	252	6	0	529	780	64243481	64243230	1.770000e-117	433
28	TraesCS7D01G259800	chr5D	97.222	252	7	0	529	780	324258882	324259133	8.230000e-116	427
29	TraesCS7D01G259800	chr5D	86.577	149	12	4	2362	2503	239035519	239035666	1.190000e-34	158
30	TraesCS7D01G259800	chr4D	98.347	363	6	0	1	363	357246497	357246859	3.490000e-179	638
31	TraesCS7D01G259800	chr4D	88.235	170	16	3	2643	2812	326382445	326382610	1.950000e-47	200
32	TraesCS7D01G259800	chr1D	96.498	257	8	1	529	785	138067437	138067692	1.070000e-114	424
33	TraesCS7D01G259800	chr1D	96.825	252	8	0	529	780	201296691	201296440	3.830000e-114	422
34	TraesCS7D01G259800	chr1D	88.690	168	14	4	2645	2812	30100584	30100422	1.950000e-47	200
35	TraesCS7D01G259800	chr5A	90.341	176	11	5	2638	2812	605231135	605231305	3.220000e-55	226
36	TraesCS7D01G259800	chr3B	89.881	168	13	3	2645	2812	154663043	154663206	2.510000e-51	213
37	TraesCS7D01G259800	chr6A	85.106	141	17	3	2373	2510	70029832	70029971	1.200000e-29	141
38	TraesCS7D01G259800	chr6A	84.615	143	20	1	2362	2502	536585989	536585847	1.200000e-29	141
39	TraesCS7D01G259800	chr2A	79.255	188	29	10	2864	3043	114340618	114340803	4.350000e-24	122

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G259800	chr7D	235479448	235482659	3211	True	2814.0	4957	100.0000	1	3212	2	chr7D.!!$R2	3211
1	TraesCS7D01G259800	chr7D	8095455	8096305	850	False	1526.0	1526	99.0600	2363	3212	1	chr7D.!!$F1	849
2	TraesCS7D01G259800	chrUn	321241017	321242597	1580	False	2667.0	2667	97.1010	781	2363	1	chrUn.!!$F1	1582
3	TraesCS7D01G259800	chrUn	322421391	322422971	1580	True	2667.0	2667	97.1010	781	2363	1	chrUn.!!$R1	1582
4	TraesCS7D01G259800	chr7A	250604018	250605598	1580	True	2667.0	2667	97.1010	781	2363	1	chr7A.!!$R1	1582
5	TraesCS7D01G259800	chr7A	653907224	653908080	856	True	1221.0	1221	92.5490	2363	3212	1	chr7A.!!$R2	849
6	TraesCS7D01G259800	chr7B	211595472	211597061	1589	True	2641.0	2641	96.7340	781	2363	1	chr7B.!!$R1	1582
7	TraesCS7D01G259800	chr3A	657308078	657308936	858	True	1356.0	1356	95.3490	2363	3212	1	chr3A.!!$R1	849
8	TraesCS7D01G259800	chr3D	178588264	178589083	819	True	1291.0	1291	94.7120	2364	3212	1	chr3D.!!$R2	848
9	TraesCS7D01G259800	chr6D	114247345	114248147	802	False	533.5	649	97.6705	1	781	2	chr6D.!!$F1	780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
562	585	0.461870	TAGGCGCTGCACATTACAGG	60.462	55.0	7.64	0.0	35.62	4.00	F
1543	1571	0.668706	CTGCGACAAGTACTGCTGCT	60.669	55.0	0.00	0.0	0.00	4.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1608	1636	0.106469	CGAGGGAGGAGATGGACTGA	60.106	60.000	0.0	0.0	0.00	3.41	R
2469	2501	1.360192	GCTGGCTGCGTCAGTTTTT	59.640	52.632	10.9	0.0	37.61	1.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
110	111	6.561070	ACACCCATAAGAATAACCCTAGCATA	59.439	38.462	0.00	0.00	0.00	3.14
160	161	4.715896	CAAACAAACATCTCACATCTCCG	58.284	43.478	0.00	0.00	0.00	4.63
168	169	3.885724	TCTCACATCTCCGTGCAAATA	57.114	42.857	0.00	0.00	36.80	1.40
341	342	7.014518	TGCAAGATTTGGAAGAAGATTTGAGAA	59.985	33.333	0.00	0.00	0.00	2.87
562	585	0.461870	TAGGCGCTGCACATTACAGG	60.462	55.000	7.64	0.00	35.62	4.00
587	610	2.105128	CCTAGCTCGGAGGCGTTG	59.895	66.667	7.20	0.00	37.29	4.10
588	611	2.583593	CTAGCTCGGAGGCGTTGC	60.584	66.667	7.20	0.00	37.29	4.17
589	612	3.356639	CTAGCTCGGAGGCGTTGCA	62.357	63.158	7.20	0.00	37.29	4.08
590	613	3.642778	TAGCTCGGAGGCGTTGCAC	62.643	63.158	7.20	0.00	37.29	4.57
592	615	3.114616	CTCGGAGGCGTTGCACTG	61.115	66.667	0.00	0.00	0.00	3.66
595	618	3.730761	GGAGGCGTTGCACTGCTG	61.731	66.667	9.04	0.00	0.00	4.41
596	619	3.730761	GAGGCGTTGCACTGCTGG	61.731	66.667	9.04	0.00	0.00	4.85
599	622	4.332637	GCGTTGCACTGCTGGGTG	62.333	66.667	1.98	0.00	39.91	4.61
662	685	4.508128	GCTAGGCGCTGCACCGTA	62.508	66.667	7.64	0.00	35.14	4.02
663	686	2.278857	CTAGGCGCTGCACCGTAG	60.279	66.667	7.64	2.34	0.00	3.51
696	719	4.627801	TGGCGGGCGCTACACAAA	62.628	61.111	7.64	0.00	41.60	2.83
697	720	3.358707	GGCGGGCGCTACACAAAA	61.359	61.111	7.64	0.00	41.60	2.44
698	721	2.175811	GCGGGCGCTACACAAAAG	59.824	61.111	7.64	0.00	38.26	2.27
699	722	2.867472	CGGGCGCTACACAAAAGG	59.133	61.111	7.64	0.00	0.00	3.11
700	723	2.686816	CGGGCGCTACACAAAAGGG	61.687	63.158	7.64	0.00	0.00	3.95
701	724	1.602605	GGGCGCTACACAAAAGGGT	60.603	57.895	7.64	0.00	0.00	4.34
702	725	1.176619	GGGCGCTACACAAAAGGGTT	61.177	55.000	7.64	0.00	0.00	4.11
703	726	1.525941	GGCGCTACACAAAAGGGTTA	58.474	50.000	7.64	0.00	0.00	2.85
704	727	1.467342	GGCGCTACACAAAAGGGTTAG	59.533	52.381	7.64	0.00	0.00	2.34
705	728	1.467342	GCGCTACACAAAAGGGTTAGG	59.533	52.381	0.00	0.00	0.00	2.69
706	729	2.081462	CGCTACACAAAAGGGTTAGGG	58.919	52.381	0.00	0.00	0.00	3.53
707	730	2.443416	GCTACACAAAAGGGTTAGGGG	58.557	52.381	0.00	0.00	0.00	4.79
708	731	2.224942	GCTACACAAAAGGGTTAGGGGT	60.225	50.000	0.00	0.00	0.00	4.95
709	732	2.375014	ACACAAAAGGGTTAGGGGTG	57.625	50.000	0.00	0.00	0.00	4.61
710	733	1.571936	ACACAAAAGGGTTAGGGGTGT	59.428	47.619	0.00	0.00	33.56	4.16
711	734	1.960689	CACAAAAGGGTTAGGGGTGTG	59.039	52.381	0.00	0.00	0.00	3.82
712	735	1.854280	ACAAAAGGGTTAGGGGTGTGA	59.146	47.619	0.00	0.00	0.00	3.58
713	736	2.245287	ACAAAAGGGTTAGGGGTGTGAA	59.755	45.455	0.00	0.00	0.00	3.18
714	737	3.301274	CAAAAGGGTTAGGGGTGTGAAA	58.699	45.455	0.00	0.00	0.00	2.69
715	738	3.901222	CAAAAGGGTTAGGGGTGTGAAAT	59.099	43.478	0.00	0.00	0.00	2.17
716	739	5.081032	CAAAAGGGTTAGGGGTGTGAAATA	58.919	41.667	0.00	0.00	0.00	1.40
717	740	4.586306	AAGGGTTAGGGGTGTGAAATAG	57.414	45.455	0.00	0.00	0.00	1.73
718	741	3.538387	AGGGTTAGGGGTGTGAAATAGT	58.462	45.455	0.00	0.00	0.00	2.12
719	742	3.920841	AGGGTTAGGGGTGTGAAATAGTT	59.079	43.478	0.00	0.00	0.00	2.24
720	743	4.355889	AGGGTTAGGGGTGTGAAATAGTTT	59.644	41.667	0.00	0.00	0.00	2.66
721	744	4.703575	GGGTTAGGGGTGTGAAATAGTTTC	59.296	45.833	0.00	0.00	40.08	2.78
722	745	4.393990	GGTTAGGGGTGTGAAATAGTTTCG	59.606	45.833	0.00	0.00	42.55	3.46
723	746	3.067684	AGGGGTGTGAAATAGTTTCGG	57.932	47.619	0.00	0.00	42.55	4.30
724	747	2.640826	AGGGGTGTGAAATAGTTTCGGA	59.359	45.455	0.00	0.00	42.55	4.55
725	748	3.073356	AGGGGTGTGAAATAGTTTCGGAA	59.927	43.478	0.00	0.00	42.55	4.30
726	749	3.189910	GGGGTGTGAAATAGTTTCGGAAC	59.810	47.826	0.00	0.00	42.55	3.62
727	750	3.189910	GGGTGTGAAATAGTTTCGGAACC	59.810	47.826	2.02	10.23	42.55	3.62
728	751	3.816523	GGTGTGAAATAGTTTCGGAACCA	59.183	43.478	2.02	0.00	42.55	3.67
729	752	4.083484	GGTGTGAAATAGTTTCGGAACCAG	60.083	45.833	2.02	0.00	42.55	4.00
730	753	4.514066	GTGTGAAATAGTTTCGGAACCAGT	59.486	41.667	2.02	0.00	42.55	4.00
731	754	5.008316	GTGTGAAATAGTTTCGGAACCAGTT	59.992	40.000	2.02	0.00	42.55	3.16
732	755	5.237779	TGTGAAATAGTTTCGGAACCAGTTC	59.762	40.000	8.05	8.05	42.55	3.01
733	756	5.237779	GTGAAATAGTTTCGGAACCAGTTCA	59.762	40.000	12.80	12.80	38.48	3.18
734	757	6.001460	TGAAATAGTTTCGGAACCAGTTCAT	58.999	36.000	12.80	0.00	36.86	2.57
735	758	6.488683	TGAAATAGTTTCGGAACCAGTTCATT	59.511	34.615	12.80	0.00	36.86	2.57
736	759	6.496338	AATAGTTTCGGAACCAGTTCATTC	57.504	37.500	12.32	0.00	41.20	2.67
737	760	4.086706	AGTTTCGGAACCAGTTCATTCT	57.913	40.909	12.32	1.31	41.20	2.40
738	761	3.815401	AGTTTCGGAACCAGTTCATTCTG	59.185	43.478	12.32	0.00	41.20	3.02
739	762	3.485463	TTCGGAACCAGTTCATTCTGT	57.515	42.857	12.32	0.00	41.20	3.41
740	763	2.766313	TCGGAACCAGTTCATTCTGTG	58.234	47.619	12.32	0.00	41.20	3.66
741	764	2.367241	TCGGAACCAGTTCATTCTGTGA	59.633	45.455	12.32	0.00	41.20	3.58
742	765	3.007940	TCGGAACCAGTTCATTCTGTGAT	59.992	43.478	12.32	0.00	41.20	3.06
743	766	3.753272	CGGAACCAGTTCATTCTGTGATT	59.247	43.478	12.32	0.00	41.20	2.57
744	767	4.216257	CGGAACCAGTTCATTCTGTGATTT	59.784	41.667	12.32	0.00	41.20	2.17
745	768	5.464168	GGAACCAGTTCATTCTGTGATTTG	58.536	41.667	12.32	0.00	41.20	2.32
746	769	5.241506	GGAACCAGTTCATTCTGTGATTTGA	59.758	40.000	12.32	0.00	41.20	2.69
747	770	6.071728	GGAACCAGTTCATTCTGTGATTTGAT	60.072	38.462	12.32	0.00	41.20	2.57
748	771	6.906157	ACCAGTTCATTCTGTGATTTGATT	57.094	33.333	0.00	0.00	36.54	2.57
749	772	7.294017	ACCAGTTCATTCTGTGATTTGATTT	57.706	32.000	0.00	0.00	36.54	2.17
750	773	7.373493	ACCAGTTCATTCTGTGATTTGATTTC	58.627	34.615	0.00	0.00	36.54	2.17
751	774	6.525628	CCAGTTCATTCTGTGATTTGATTTCG	59.474	38.462	0.00	0.00	36.54	3.46
752	775	7.300320	CAGTTCATTCTGTGATTTGATTTCGA	58.700	34.615	0.00	0.00	36.54	3.71
753	776	7.966753	CAGTTCATTCTGTGATTTGATTTCGAT	59.033	33.333	0.00	0.00	36.54	3.59
754	777	8.517878	AGTTCATTCTGTGATTTGATTTCGATT	58.482	29.630	0.00	0.00	36.54	3.34
755	778	9.773328	GTTCATTCTGTGATTTGATTTCGATTA	57.227	29.630	0.00	0.00	36.54	1.75
760	783	9.613428	TTCTGTGATTTGATTTCGATTATAGGT	57.387	29.630	0.00	0.00	0.00	3.08
761	784	9.613428	TCTGTGATTTGATTTCGATTATAGGTT	57.387	29.630	0.00	0.00	0.00	3.50
941	964	2.355363	TCGTCAAACGCGACAGGG	60.355	61.111	15.93	0.00	42.21	4.45
1281	1309	1.084370	CAATGAGAACTCCGGTCGGC	61.084	60.000	0.00	0.00	34.68	5.54
1543	1571	0.668706	CTGCGACAAGTACTGCTGCT	60.669	55.000	0.00	0.00	0.00	4.24
1614	1642	2.107141	CCGATCCCGCTTCAGTCC	59.893	66.667	0.00	0.00	0.00	3.85
1779	1807	1.416401	GGGGAGATATCCGCTCACAAA	59.584	52.381	15.73	0.00	37.53	2.83
2118	2146	2.266055	CTCTGGGTCGTCCAAGGC	59.734	66.667	3.08	0.00	46.51	4.35
2214	2242	2.038426	TCTTGTTCTTCCGGCTTGATCA	59.962	45.455	0.00	0.00	0.00	2.92
2310	2338	1.650528	AAACAGGTAGGAGCAGAGCT	58.349	50.000	0.00	0.00	43.88	4.09
2311	2339	0.901124	AACAGGTAGGAGCAGAGCTG	59.099	55.000	0.00	0.00	44.80	4.24
2469	2501	3.554934	CATATTTGTTAGGCCCAGCAGA	58.445	45.455	0.00	0.00	0.00	4.26
3050	3090	5.591472	TGAGTGGATTTGAAGATAATGGCTG	59.409	40.000	0.00	0.00	0.00	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
160	161	9.937175	GTTTAGTTTGGATCTAGATATTTGCAC	57.063	33.333	4.89	0.00	0.00	4.57
168	169	8.625467	AACCCTAGTTTAGTTTGGATCTAGAT	57.375	34.615	4.47	4.47	29.61	1.98
341	342	2.641746	CCTCTCCCACTCTCCCCCT	61.642	68.421	0.00	0.00	0.00	4.79
578	601	3.730761	CAGCAGTGCAACGCCTCC	61.731	66.667	19.20	0.00	45.86	4.30
579	602	3.730761	CCAGCAGTGCAACGCCTC	61.731	66.667	19.20	0.00	45.86	4.70
582	605	4.332637	CACCCAGCAGTGCAACGC	62.333	66.667	19.20	0.31	45.86	4.84
646	669	2.278857	CTACGGTGCAGCGCCTAG	60.279	66.667	35.78	25.87	0.00	3.02
647	670	3.833645	CCTACGGTGCAGCGCCTA	61.834	66.667	35.78	21.25	0.00	3.93
679	702	4.627801	TTTGTGTAGCGCCCGCCA	62.628	61.111	2.29	0.00	43.17	5.69
680	703	3.322706	CTTTTGTGTAGCGCCCGCC	62.323	63.158	2.29	0.00	43.17	6.13
681	704	2.175811	CTTTTGTGTAGCGCCCGC	59.824	61.111	2.29	4.20	42.33	6.13
682	705	2.686816	CCCTTTTGTGTAGCGCCCG	61.687	63.158	2.29	0.00	0.00	6.13
683	706	1.176619	AACCCTTTTGTGTAGCGCCC	61.177	55.000	2.29	0.00	0.00	6.13
684	707	1.467342	CTAACCCTTTTGTGTAGCGCC	59.533	52.381	2.29	0.00	0.00	6.53
685	708	1.467342	CCTAACCCTTTTGTGTAGCGC	59.533	52.381	0.00	0.00	0.00	5.92
686	709	2.081462	CCCTAACCCTTTTGTGTAGCG	58.919	52.381	0.00	0.00	0.00	4.26
687	710	2.224942	ACCCCTAACCCTTTTGTGTAGC	60.225	50.000	0.00	0.00	0.00	3.58
688	711	3.181437	ACACCCCTAACCCTTTTGTGTAG	60.181	47.826	0.00	0.00	34.03	2.74
689	712	2.784682	ACACCCCTAACCCTTTTGTGTA	59.215	45.455	0.00	0.00	34.03	2.90
690	713	1.571936	ACACCCCTAACCCTTTTGTGT	59.428	47.619	0.00	0.00	0.00	3.72
691	714	1.960689	CACACCCCTAACCCTTTTGTG	59.039	52.381	0.00	0.00	0.00	3.33
692	715	1.854280	TCACACCCCTAACCCTTTTGT	59.146	47.619	0.00	0.00	0.00	2.83
693	716	2.668144	TCACACCCCTAACCCTTTTG	57.332	50.000	0.00	0.00	0.00	2.44
694	717	3.691698	TTTCACACCCCTAACCCTTTT	57.308	42.857	0.00	0.00	0.00	2.27
695	718	3.915346	ATTTCACACCCCTAACCCTTT	57.085	42.857	0.00	0.00	0.00	3.11
696	719	3.920841	ACTATTTCACACCCCTAACCCTT	59.079	43.478	0.00	0.00	0.00	3.95
697	720	3.538387	ACTATTTCACACCCCTAACCCT	58.462	45.455	0.00	0.00	0.00	4.34
698	721	4.311520	AACTATTTCACACCCCTAACCC	57.688	45.455	0.00	0.00	0.00	4.11
699	722	4.393990	CGAAACTATTTCACACCCCTAACC	59.606	45.833	2.50	0.00	39.63	2.85
700	723	4.393990	CCGAAACTATTTCACACCCCTAAC	59.606	45.833	2.50	0.00	39.63	2.34
701	724	4.286549	TCCGAAACTATTTCACACCCCTAA	59.713	41.667	2.50	0.00	39.63	2.69
702	725	3.839490	TCCGAAACTATTTCACACCCCTA	59.161	43.478	2.50	0.00	39.63	3.53
703	726	2.640826	TCCGAAACTATTTCACACCCCT	59.359	45.455	2.50	0.00	39.63	4.79
704	727	3.062122	TCCGAAACTATTTCACACCCC	57.938	47.619	2.50	0.00	39.63	4.95
705	728	3.189910	GGTTCCGAAACTATTTCACACCC	59.810	47.826	2.50	0.00	39.63	4.61
706	729	3.816523	TGGTTCCGAAACTATTTCACACC	59.183	43.478	0.00	4.88	39.63	4.16
707	730	4.514066	ACTGGTTCCGAAACTATTTCACAC	59.486	41.667	0.00	0.00	39.63	3.82
708	731	4.710324	ACTGGTTCCGAAACTATTTCACA	58.290	39.130	0.00	0.00	39.63	3.58
709	732	5.237779	TGAACTGGTTCCGAAACTATTTCAC	59.762	40.000	10.44	0.00	39.18	3.18
710	733	5.369833	TGAACTGGTTCCGAAACTATTTCA	58.630	37.500	10.44	0.03	40.63	2.69
711	734	5.934935	TGAACTGGTTCCGAAACTATTTC	57.065	39.130	10.44	0.00	36.61	2.17
712	735	6.715264	AGAATGAACTGGTTCCGAAACTATTT	59.285	34.615	10.44	0.00	38.77	1.40
713	736	6.149474	CAGAATGAACTGGTTCCGAAACTATT	59.851	38.462	10.44	2.78	39.69	1.73
714	737	5.643777	CAGAATGAACTGGTTCCGAAACTAT	59.356	40.000	10.44	0.00	39.69	2.12
715	738	4.994852	CAGAATGAACTGGTTCCGAAACTA	59.005	41.667	10.44	0.00	39.69	2.24
716	739	3.815401	CAGAATGAACTGGTTCCGAAACT	59.185	43.478	10.44	1.99	39.69	2.66
717	740	3.564225	ACAGAATGAACTGGTTCCGAAAC	59.436	43.478	10.44	0.00	39.69	2.78
718	741	3.563808	CACAGAATGAACTGGTTCCGAAA	59.436	43.478	10.44	0.00	39.69	3.46
719	742	3.138304	CACAGAATGAACTGGTTCCGAA	58.862	45.455	10.44	0.00	39.69	4.30
720	743	2.367241	TCACAGAATGAACTGGTTCCGA	59.633	45.455	10.44	0.00	39.69	4.55
721	744	2.766313	TCACAGAATGAACTGGTTCCG	58.234	47.619	10.44	0.00	39.69	4.30
722	745	5.241506	TCAAATCACAGAATGAACTGGTTCC	59.758	40.000	10.44	0.00	41.93	3.62
723	746	6.317789	TCAAATCACAGAATGAACTGGTTC	57.682	37.500	6.53	6.53	41.93	3.62
724	747	6.906157	ATCAAATCACAGAATGAACTGGTT	57.094	33.333	0.00	0.00	41.93	3.67
725	748	6.906157	AATCAAATCACAGAATGAACTGGT	57.094	33.333	0.00	0.00	41.93	4.00
726	749	6.525628	CGAAATCAAATCACAGAATGAACTGG	59.474	38.462	0.00	0.00	41.93	4.00
727	750	7.300320	TCGAAATCAAATCACAGAATGAACTG	58.700	34.615	0.00	0.00	41.93	3.16
728	751	7.439157	TCGAAATCAAATCACAGAATGAACT	57.561	32.000	0.00	0.00	41.93	3.01
729	752	8.679288	AATCGAAATCAAATCACAGAATGAAC	57.321	30.769	0.00	0.00	41.93	3.18
734	757	9.613428	ACCTATAATCGAAATCAAATCACAGAA	57.387	29.630	0.00	0.00	0.00	3.02
735	758	9.613428	AACCTATAATCGAAATCAAATCACAGA	57.387	29.630	0.00	0.00	0.00	3.41
755	778	9.218440	CAGGCAAATTTGACAAATTTAACCTAT	57.782	29.630	33.54	22.68	46.34	2.57
756	779	7.172361	GCAGGCAAATTTGACAAATTTAACCTA	59.828	33.333	33.54	6.41	46.34	3.08
757	780	6.017192	GCAGGCAAATTTGACAAATTTAACCT	60.017	34.615	31.38	31.38	46.34	3.50
758	781	6.142139	GCAGGCAAATTTGACAAATTTAACC	58.858	36.000	29.34	29.35	46.34	2.85
759	782	5.845433	CGCAGGCAAATTTGACAAATTTAAC	59.155	36.000	29.34	24.58	46.34	2.01
760	783	5.525378	ACGCAGGCAAATTTGACAAATTTAA	59.475	32.000	29.34	0.00	46.34	1.52
761	784	5.050499	CACGCAGGCAAATTTGACAAATTTA	60.050	36.000	29.34	0.00	46.34	1.40
763	786	3.248125	CACGCAGGCAAATTTGACAAATT	59.752	39.130	25.59	18.41	42.62	1.82
764	787	2.801679	CACGCAGGCAAATTTGACAAAT	59.198	40.909	25.59	7.62	39.18	2.32
765	788	2.200067	CACGCAGGCAAATTTGACAAA	58.800	42.857	25.59	2.48	39.18	2.83
766	789	1.537776	CCACGCAGGCAAATTTGACAA	60.538	47.619	25.59	0.00	39.18	3.18
767	790	0.031857	CCACGCAGGCAAATTTGACA	59.968	50.000	25.59	0.00	39.18	3.58
768	791	0.313672	TCCACGCAGGCAAATTTGAC	59.686	50.000	22.31	19.61	37.29	3.18
769	792	0.313672	GTCCACGCAGGCAAATTTGA	59.686	50.000	22.31	0.00	37.29	2.69
770	793	1.003262	CGTCCACGCAGGCAAATTTG	61.003	55.000	14.03	14.03	37.29	2.32
771	794	1.285641	CGTCCACGCAGGCAAATTT	59.714	52.632	0.00	0.00	37.29	1.82
772	795	2.953821	CGTCCACGCAGGCAAATT	59.046	55.556	0.00	0.00	37.29	1.82
941	964	1.657751	GGTCGCCATTCCTTTCCTGC	61.658	60.000	0.00	0.00	0.00	4.85
1543	1571	2.577059	GATGTCCTCCCGCGTCAA	59.423	61.111	4.92	0.00	0.00	3.18
1608	1636	0.106469	CGAGGGAGGAGATGGACTGA	60.106	60.000	0.00	0.00	0.00	3.41
1779	1807	3.240134	ATGGTCGCGCTTCCACAGT	62.240	57.895	19.61	4.87	36.50	3.55
2469	2501	1.360192	GCTGGCTGCGTCAGTTTTT	59.640	52.632	10.90	0.00	37.61	1.94
2992	3032	7.231467	AGCTCAAACTTTCCCAAATTACTCTA	58.769	34.615	0.00	0.00	0.00	2.43
3050	3090	7.637709	AAAAATTGGATTTGTTTAGCGAGAC	57.362	32.000	0.00	0.00	31.77	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.