Multiple sequence alignment - TraesCS7D01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G259600 chr7D 100.000 5801 0 0 1 5801 235372544 235378344 0.000000e+00 10713.0
1 TraesCS7D01G259600 chr7D 89.873 158 12 2 3880 4033 436961949 436961792 3.550000e-47 200.0
2 TraesCS7D01G259600 chr7D 95.935 123 5 0 4 126 594163984 594163862 3.550000e-47 200.0
3 TraesCS7D01G259600 chr7D 88.961 154 13 3 3884 4034 197927157 197927005 2.760000e-43 187.0
4 TraesCS7D01G259600 chr7D 83.562 73 10 2 2016 2087 608296643 608296572 3.750000e-07 67.6
5 TraesCS7D01G259600 chr7B 94.157 2567 99 13 2861 5421 211373043 211375564 0.000000e+00 3862.0
6 TraesCS7D01G259600 chr7B 95.006 1542 50 14 153 1687 211371325 211372846 0.000000e+00 2396.0
7 TraesCS7D01G259600 chr7B 86.835 790 88 10 2017 2802 707963983 707963206 0.000000e+00 869.0
8 TraesCS7D01G259600 chr7B 94.372 231 10 3 1704 1932 211372830 211373059 9.250000e-93 351.0
9 TraesCS7D01G259600 chr7B 91.558 154 10 2 3881 4031 155471167 155471320 5.890000e-50 209.0
10 TraesCS7D01G259600 chr7B 89.873 158 12 2 3880 4033 453623444 453623287 3.550000e-47 200.0
11 TraesCS7D01G259600 chr7A 94.314 2515 94 22 2861 5359 250215882 250218363 0.000000e+00 3807.0
12 TraesCS7D01G259600 chr7A 93.281 1533 62 20 177 1687 250214171 250215684 0.000000e+00 2222.0
13 TraesCS7D01G259600 chr7A 95.238 231 9 2 1704 1932 250215668 250215898 1.190000e-96 364.0
14 TraesCS7D01G259600 chr7A 93.333 165 10 1 5636 5800 250220167 250220330 5.810000e-60 243.0
15 TraesCS7D01G259600 chr7A 89.241 158 13 2 3880 4033 486930094 486929937 1.650000e-45 195.0
16 TraesCS7D01G259600 chr7A 94.828 116 2 3 5409 5520 250220049 250220164 1.660000e-40 178.0
17 TraesCS7D01G259600 chr7A 95.082 61 2 1 5360 5419 250219808 250219868 1.720000e-15 95.3
18 TraesCS7D01G259600 chr3A 89.847 719 69 3 1053 1767 697386045 697385327 0.000000e+00 920.0
19 TraesCS7D01G259600 chr3A 88.333 720 80 3 1053 1768 697284885 697284166 0.000000e+00 861.0
20 TraesCS7D01G259600 chr3A 82.228 754 114 12 1973 2713 710336959 710336213 2.950000e-177 632.0
21 TraesCS7D01G259600 chr3A 83.610 421 49 15 3198 3598 697283592 697283172 1.530000e-100 377.0
22 TraesCS7D01G259600 chr3A 79.925 533 88 11 1973 2493 710397820 710397295 1.970000e-99 374.0
23 TraesCS7D01G259600 chr3A 80.909 330 36 16 2875 3184 697385159 697384837 9.720000e-58 235.0
24 TraesCS7D01G259600 chr3A 82.018 228 35 4 3659 3882 697384432 697384207 7.670000e-44 189.0
25 TraesCS7D01G259600 chr3B 89.246 716 73 3 1057 1768 748464235 748463520 0.000000e+00 893.0
26 TraesCS7D01G259600 chr3B 89.451 692 68 4 1079 1766 748622856 748622166 0.000000e+00 869.0
27 TraesCS7D01G259600 chr3B 85.067 817 103 9 2017 2826 753268210 753267406 0.000000e+00 815.0
28 TraesCS7D01G259600 chr3B 78.353 753 90 37 2875 3598 748621996 748621288 2.500000e-113 420.0
29 TraesCS7D01G259600 chr3B 77.618 697 97 29 4128 4799 748619022 748618360 9.180000e-98 368.0
30 TraesCS7D01G259600 chr3B 82.759 406 50 13 3208 3595 748462923 748462520 1.550000e-90 344.0
31 TraesCS7D01G259600 chr3B 89.823 226 23 0 4574 4799 748458620 748458395 2.040000e-74 291.0
32 TraesCS7D01G259600 chr3B 83.929 224 34 2 3659 3882 748462498 748462277 4.550000e-51 213.0
33 TraesCS7D01G259600 chr3D 89.337 694 70 3 1079 1768 561451477 561450784 0.000000e+00 869.0
34 TraesCS7D01G259600 chr3D 84.598 870 118 11 1961 2824 316811915 316811056 0.000000e+00 850.0
35 TraesCS7D01G259600 chr3D 84.633 859 102 15 2021 2865 614469796 614468954 0.000000e+00 828.0
36 TraesCS7D01G259600 chr3D 83.214 840 121 15 1979 2813 46267002 46267826 0.000000e+00 752.0
37 TraesCS7D01G259600 chr3D 79.443 754 82 34 2875 3598 561450617 561449907 3.170000e-127 466.0
38 TraesCS7D01G259600 chr3D 76.874 787 122 32 4048 4802 561447951 561447193 1.960000e-104 390.0
39 TraesCS7D01G259600 chr3D 86.179 123 16 1 3760 3882 561449820 561449699 1.310000e-26 132.0
40 TraesCS7D01G259600 chr2D 86.364 792 90 12 2030 2817 575827948 575827171 0.000000e+00 848.0
41 TraesCS7D01G259600 chr2D 85.203 811 103 10 2007 2814 626769370 626770166 0.000000e+00 817.0
42 TraesCS7D01G259600 chr2D 96.694 121 4 0 1 121 8330470 8330350 9.860000e-48 202.0
43 TraesCS7D01G259600 chr2B 85.697 804 100 9 2017 2817 421078064 421077273 0.000000e+00 833.0
44 TraesCS7D01G259600 chr1B 84.813 856 97 22 2021 2860 433645884 433645046 0.000000e+00 830.0
45 TraesCS7D01G259600 chr6D 78.530 517 71 23 2013 2520 360711447 360711932 2.630000e-78 303.0
46 TraesCS7D01G259600 chr6D 95.238 126 6 0 1 126 343301334 343301459 3.550000e-47 200.0
47 TraesCS7D01G259600 chr5A 91.558 154 8 4 3881 4030 86662019 86662171 2.120000e-49 207.0
48 TraesCS7D01G259600 chr1D 96.748 123 4 0 1 123 467112517 467112395 7.620000e-49 206.0
49 TraesCS7D01G259600 chr1D 96.694 121 4 0 4 124 9581059 9580939 9.860000e-48 202.0
50 TraesCS7D01G259600 chr1D 94.488 127 7 0 3 129 419291332 419291206 4.590000e-46 196.0
51 TraesCS7D01G259600 chr5D 96.721 122 4 0 4 125 506154982 506155103 2.740000e-48 204.0
52 TraesCS7D01G259600 chr4B 90.850 153 11 2 3881 4030 658773216 658773064 9.860000e-48 202.0
53 TraesCS7D01G259600 chr1A 95.200 125 6 0 1 125 480840878 480841002 1.280000e-46 198.0
54 TraesCS7D01G259600 chr4D 94.444 126 7 0 1 126 314630969 314631094 1.650000e-45 195.0
55 TraesCS7D01G259600 chr6A 80.488 164 23 7 1959 2118 454139731 454139573 3.670000e-22 117.0
56 TraesCS7D01G259600 chr2A 100.000 33 0 0 2821 2853 768270199 768270231 1.750000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G259600 chr7D 235372544 235378344 5800 False 10713.000000 10713 100.000000 1 5801 1 chr7D.!!$F1 5800
1 TraesCS7D01G259600 chr7B 211371325 211375564 4239 False 2203.000000 3862 94.511667 153 5421 3 chr7B.!!$F2 5268
2 TraesCS7D01G259600 chr7B 707963206 707963983 777 True 869.000000 869 86.835000 2017 2802 1 chr7B.!!$R2 785
3 TraesCS7D01G259600 chr7A 250214171 250220330 6159 False 1151.550000 3807 94.346000 177 5800 6 chr7A.!!$F1 5623
4 TraesCS7D01G259600 chr3A 710336213 710336959 746 True 632.000000 632 82.228000 1973 2713 1 chr3A.!!$R1 740
5 TraesCS7D01G259600 chr3A 697283172 697284885 1713 True 619.000000 861 85.971500 1053 3598 2 chr3A.!!$R3 2545
6 TraesCS7D01G259600 chr3A 697384207 697386045 1838 True 448.000000 920 84.258000 1053 3882 3 chr3A.!!$R4 2829
7 TraesCS7D01G259600 chr3A 710397295 710397820 525 True 374.000000 374 79.925000 1973 2493 1 chr3A.!!$R2 520
8 TraesCS7D01G259600 chr3B 753267406 753268210 804 True 815.000000 815 85.067000 2017 2826 1 chr3B.!!$R1 809
9 TraesCS7D01G259600 chr3B 748618360 748622856 4496 True 552.333333 869 81.807333 1079 4799 3 chr3B.!!$R3 3720
10 TraesCS7D01G259600 chr3B 748458395 748464235 5840 True 435.250000 893 86.439250 1057 4799 4 chr3B.!!$R2 3742
11 TraesCS7D01G259600 chr3D 316811056 316811915 859 True 850.000000 850 84.598000 1961 2824 1 chr3D.!!$R1 863
12 TraesCS7D01G259600 chr3D 614468954 614469796 842 True 828.000000 828 84.633000 2021 2865 1 chr3D.!!$R2 844
13 TraesCS7D01G259600 chr3D 46267002 46267826 824 False 752.000000 752 83.214000 1979 2813 1 chr3D.!!$F1 834
14 TraesCS7D01G259600 chr3D 561447193 561451477 4284 True 464.250000 869 82.958250 1079 4802 4 chr3D.!!$R3 3723
15 TraesCS7D01G259600 chr2D 575827171 575827948 777 True 848.000000 848 86.364000 2030 2817 1 chr2D.!!$R2 787
16 TraesCS7D01G259600 chr2D 626769370 626770166 796 False 817.000000 817 85.203000 2007 2814 1 chr2D.!!$F1 807
17 TraesCS7D01G259600 chr2B 421077273 421078064 791 True 833.000000 833 85.697000 2017 2817 1 chr2B.!!$R1 800
18 TraesCS7D01G259600 chr1B 433645046 433645884 838 True 830.000000 830 84.813000 2021 2860 1 chr1B.!!$R1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.037232 GGAGGTGAGGTCAAAGGACG 60.037 60.000 0.0 0.0 45.28 4.79 F
39 40 0.178944 TGAGGTCAAAGGACGAGGGA 60.179 55.000 0.0 0.0 45.28 4.20 F
42 43 0.179108 GGTCAAAGGACGAGGGATCG 60.179 60.000 0.0 0.0 45.28 3.69 F
1987 2091 0.108520 TTGGGCGACTAAACCTAGCG 60.109 55.000 0.0 0.0 0.00 4.26 F
2539 2656 0.893727 GTGTTGCCCCGGTCTGATTT 60.894 55.000 0.0 0.0 0.00 2.17 F
2714 2839 2.427506 GTTGGTGTCAAGCTTAGAGGG 58.572 52.381 0.0 0.0 32.92 4.30 F
2717 2842 2.441750 TGGTGTCAAGCTTAGAGGGTTT 59.558 45.455 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2049 0.459411 GCCCGAGAGAGAGAAACAGC 60.459 60.000 0.00 0.00 0.00 4.40 R
1971 2072 0.527169 GGTCGCTAGGTTTAGTCGCC 60.527 60.000 0.00 0.00 0.00 5.54 R
1993 2097 1.109920 GTGGCGGATGAGCTCTCCTA 61.110 60.000 22.12 11.11 37.29 2.94 R
2865 3007 4.021807 TCACCTGCAGTAAACGTCTAATCA 60.022 41.667 13.81 0.00 0.00 2.57 R
4147 7262 1.208052 GATGCTACCAGGCAGAGTCAA 59.792 52.381 0.00 0.00 45.75 3.18 R
4556 8559 4.499037 AACAAACGGTTAAGAGATTGCC 57.501 40.909 0.00 0.00 38.15 4.52 R
4867 8870 2.802414 CGAACGAACCGACCGACC 60.802 66.667 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.704381 CGAGGTCGTTTGAGAGGAG 57.296 57.895 0.00 0.00 34.11 3.69
19 20 0.171455 CGAGGTCGTTTGAGAGGAGG 59.829 60.000 0.00 0.00 34.11 4.30
20 21 1.258676 GAGGTCGTTTGAGAGGAGGT 58.741 55.000 0.00 0.00 0.00 3.85
21 22 0.969894 AGGTCGTTTGAGAGGAGGTG 59.030 55.000 0.00 0.00 0.00 4.00
22 23 0.966920 GGTCGTTTGAGAGGAGGTGA 59.033 55.000 0.00 0.00 0.00 4.02
23 24 1.067495 GGTCGTTTGAGAGGAGGTGAG 60.067 57.143 0.00 0.00 0.00 3.51
24 25 1.067495 GTCGTTTGAGAGGAGGTGAGG 60.067 57.143 0.00 0.00 0.00 3.86
25 26 0.969894 CGTTTGAGAGGAGGTGAGGT 59.030 55.000 0.00 0.00 0.00 3.85
26 27 1.067495 CGTTTGAGAGGAGGTGAGGTC 60.067 57.143 0.00 0.00 0.00 3.85
27 28 1.971357 GTTTGAGAGGAGGTGAGGTCA 59.029 52.381 0.00 0.00 0.00 4.02
28 29 2.368875 GTTTGAGAGGAGGTGAGGTCAA 59.631 50.000 0.00 0.00 0.00 3.18
29 30 2.398754 TGAGAGGAGGTGAGGTCAAA 57.601 50.000 0.00 0.00 0.00 2.69
30 31 2.251818 TGAGAGGAGGTGAGGTCAAAG 58.748 52.381 0.00 0.00 0.00 2.77
31 32 1.552792 GAGAGGAGGTGAGGTCAAAGG 59.447 57.143 0.00 0.00 0.00 3.11
32 33 1.150135 AGAGGAGGTGAGGTCAAAGGA 59.850 52.381 0.00 0.00 0.00 3.36
33 34 1.276705 GAGGAGGTGAGGTCAAAGGAC 59.723 57.143 0.00 0.00 43.55 3.85
34 35 0.037232 GGAGGTGAGGTCAAAGGACG 60.037 60.000 0.00 0.00 45.28 4.79
35 36 0.966920 GAGGTGAGGTCAAAGGACGA 59.033 55.000 0.00 0.00 45.28 4.20
36 37 0.969894 AGGTGAGGTCAAAGGACGAG 59.030 55.000 0.00 0.00 45.28 4.18
37 38 0.037232 GGTGAGGTCAAAGGACGAGG 60.037 60.000 0.00 0.00 45.28 4.63
38 39 0.037232 GTGAGGTCAAAGGACGAGGG 60.037 60.000 0.00 0.00 45.28 4.30
39 40 0.178944 TGAGGTCAAAGGACGAGGGA 60.179 55.000 0.00 0.00 45.28 4.20
40 41 1.196012 GAGGTCAAAGGACGAGGGAT 58.804 55.000 0.00 0.00 45.28 3.85
41 42 1.137282 GAGGTCAAAGGACGAGGGATC 59.863 57.143 0.00 0.00 45.28 3.36
42 43 0.179108 GGTCAAAGGACGAGGGATCG 60.179 60.000 0.00 0.00 45.28 3.69
49 50 4.749323 ACGAGGGATCGTGTGGTA 57.251 55.556 2.00 0.00 45.30 3.25
50 51 2.187073 ACGAGGGATCGTGTGGTAC 58.813 57.895 2.00 0.00 45.30 3.34
51 52 0.323178 ACGAGGGATCGTGTGGTACT 60.323 55.000 2.00 0.00 45.30 2.73
52 53 0.815734 CGAGGGATCGTGTGGTACTT 59.184 55.000 0.00 0.00 0.00 2.24
53 54 1.203994 CGAGGGATCGTGTGGTACTTT 59.796 52.381 0.00 0.00 0.00 2.66
54 55 2.424601 CGAGGGATCGTGTGGTACTTTA 59.575 50.000 0.00 0.00 0.00 1.85
55 56 3.119388 CGAGGGATCGTGTGGTACTTTAA 60.119 47.826 0.00 0.00 0.00 1.52
56 57 4.618927 CGAGGGATCGTGTGGTACTTTAAA 60.619 45.833 0.00 0.00 0.00 1.52
57 58 5.231702 AGGGATCGTGTGGTACTTTAAAA 57.768 39.130 0.00 0.00 0.00 1.52
58 59 5.812286 AGGGATCGTGTGGTACTTTAAAAT 58.188 37.500 0.00 0.00 0.00 1.82
59 60 5.646360 AGGGATCGTGTGGTACTTTAAAATG 59.354 40.000 0.00 0.00 0.00 2.32
60 61 5.644636 GGGATCGTGTGGTACTTTAAAATGA 59.355 40.000 0.00 0.00 0.00 2.57
61 62 6.149807 GGGATCGTGTGGTACTTTAAAATGAA 59.850 38.462 0.00 0.00 0.00 2.57
62 63 7.308710 GGGATCGTGTGGTACTTTAAAATGAAA 60.309 37.037 0.00 0.00 0.00 2.69
63 64 7.749126 GGATCGTGTGGTACTTTAAAATGAAAG 59.251 37.037 0.00 0.00 41.38 2.62
64 65 7.789273 TCGTGTGGTACTTTAAAATGAAAGA 57.211 32.000 3.04 0.00 38.48 2.52
65 66 8.211116 TCGTGTGGTACTTTAAAATGAAAGAA 57.789 30.769 3.04 0.00 38.48 2.52
66 67 8.339714 TCGTGTGGTACTTTAAAATGAAAGAAG 58.660 33.333 3.04 0.00 38.48 2.85
67 68 8.126700 CGTGTGGTACTTTAAAATGAAAGAAGT 58.873 33.333 3.04 0.00 38.48 3.01
75 76 9.628500 ACTTTAAAATGAAAGAAGTAGAGGTGT 57.372 29.630 3.04 0.00 38.48 4.16
76 77 9.884465 CTTTAAAATGAAAGAAGTAGAGGTGTG 57.116 33.333 0.00 0.00 38.48 3.82
77 78 9.621629 TTTAAAATGAAAGAAGTAGAGGTGTGA 57.378 29.630 0.00 0.00 0.00 3.58
78 79 7.497925 AAAATGAAAGAAGTAGAGGTGTGAC 57.502 36.000 0.00 0.00 0.00 3.67
79 80 5.808366 ATGAAAGAAGTAGAGGTGTGACA 57.192 39.130 0.00 0.00 0.00 3.58
80 81 5.201713 TGAAAGAAGTAGAGGTGTGACAG 57.798 43.478 0.00 0.00 0.00 3.51
81 82 4.649674 TGAAAGAAGTAGAGGTGTGACAGT 59.350 41.667 0.00 0.00 0.00 3.55
82 83 5.128827 TGAAAGAAGTAGAGGTGTGACAGTT 59.871 40.000 0.00 0.00 0.00 3.16
83 84 5.615925 AAGAAGTAGAGGTGTGACAGTTT 57.384 39.130 0.00 0.00 0.00 2.66
84 85 5.615925 AGAAGTAGAGGTGTGACAGTTTT 57.384 39.130 0.00 0.00 0.00 2.43
85 86 5.360591 AGAAGTAGAGGTGTGACAGTTTTG 58.639 41.667 0.00 0.00 0.00 2.44
86 87 3.467803 AGTAGAGGTGTGACAGTTTTGC 58.532 45.455 0.00 0.00 0.00 3.68
87 88 2.717639 AGAGGTGTGACAGTTTTGCT 57.282 45.000 0.00 0.00 0.00 3.91
88 89 3.004752 AGAGGTGTGACAGTTTTGCTT 57.995 42.857 0.00 0.00 0.00 3.91
89 90 4.150897 AGAGGTGTGACAGTTTTGCTTA 57.849 40.909 0.00 0.00 0.00 3.09
90 91 4.718961 AGAGGTGTGACAGTTTTGCTTAT 58.281 39.130 0.00 0.00 0.00 1.73
91 92 5.865085 AGAGGTGTGACAGTTTTGCTTATA 58.135 37.500 0.00 0.00 0.00 0.98
92 93 6.476378 AGAGGTGTGACAGTTTTGCTTATAT 58.524 36.000 0.00 0.00 0.00 0.86
93 94 6.372659 AGAGGTGTGACAGTTTTGCTTATATG 59.627 38.462 0.00 0.00 0.00 1.78
94 95 5.415701 AGGTGTGACAGTTTTGCTTATATGG 59.584 40.000 0.00 0.00 0.00 2.74
95 96 5.095490 GTGTGACAGTTTTGCTTATATGGC 58.905 41.667 0.00 0.00 0.00 4.40
96 97 4.764308 TGTGACAGTTTTGCTTATATGGCA 59.236 37.500 0.00 0.00 37.97 4.92
97 98 5.095490 GTGACAGTTTTGCTTATATGGCAC 58.905 41.667 0.00 2.77 39.29 5.01
98 99 5.335583 GTGACAGTTTTGCTTATATGGCACA 60.336 40.000 11.33 0.00 44.32 4.57
99 100 9.589488 TGTGACAGTTTTGCTTATATGGCACAC 62.589 40.741 13.93 6.25 46.68 3.82
115 116 2.850321 CACACGTGTGCCAAATATCAC 58.150 47.619 33.52 0.00 39.39 3.06
116 117 2.225255 CACACGTGTGCCAAATATCACA 59.775 45.455 33.52 0.00 40.50 3.58
117 118 2.483877 ACACGTGTGCCAAATATCACAG 59.516 45.455 22.71 0.00 43.01 3.66
118 119 2.483877 CACGTGTGCCAAATATCACAGT 59.516 45.455 7.58 0.00 43.01 3.55
119 120 2.742053 ACGTGTGCCAAATATCACAGTC 59.258 45.455 0.00 0.00 43.01 3.51
120 121 2.095853 CGTGTGCCAAATATCACAGTCC 59.904 50.000 0.00 0.00 43.01 3.85
121 122 3.347216 GTGTGCCAAATATCACAGTCCT 58.653 45.455 0.00 0.00 43.01 3.85
122 123 3.758554 GTGTGCCAAATATCACAGTCCTT 59.241 43.478 0.00 0.00 43.01 3.36
123 124 4.218417 GTGTGCCAAATATCACAGTCCTTT 59.782 41.667 0.00 0.00 43.01 3.11
124 125 4.832266 TGTGCCAAATATCACAGTCCTTTT 59.168 37.500 0.00 0.00 38.18 2.27
125 126 5.304101 TGTGCCAAATATCACAGTCCTTTTT 59.696 36.000 0.00 0.00 38.18 1.94
126 127 5.863935 GTGCCAAATATCACAGTCCTTTTTC 59.136 40.000 0.00 0.00 33.63 2.29
127 128 5.774690 TGCCAAATATCACAGTCCTTTTTCT 59.225 36.000 0.00 0.00 0.00 2.52
128 129 6.945435 TGCCAAATATCACAGTCCTTTTTCTA 59.055 34.615 0.00 0.00 0.00 2.10
129 130 7.615365 TGCCAAATATCACAGTCCTTTTTCTAT 59.385 33.333 0.00 0.00 0.00 1.98
130 131 8.470002 GCCAAATATCACAGTCCTTTTTCTATT 58.530 33.333 0.00 0.00 0.00 1.73
150 151 7.768240 TCTATTTATTCTTTTCCTTTTCCGGC 58.232 34.615 0.00 0.00 0.00 6.13
151 152 4.794278 TTATTCTTTTCCTTTTCCGGCC 57.206 40.909 0.00 0.00 0.00 6.13
333 340 2.002586 CACGTTTTCTCATGAGCGGAT 58.997 47.619 18.36 0.00 0.00 4.18
375 382 2.354805 GGTTGTCCACCAGATACTGACC 60.355 54.545 0.00 0.00 46.42 4.02
455 464 0.394565 AGTATCGGGCCTTGATCTGC 59.605 55.000 13.29 6.84 0.00 4.26
474 483 2.499693 TGCGAAGATTCAGGTGATGGTA 59.500 45.455 0.00 0.00 0.00 3.25
526 535 3.243877 CGACGGTGTTCATCATCATCTTC 59.756 47.826 0.00 0.00 0.00 2.87
605 614 2.047560 CCCCACTCCCGTTCGTTC 60.048 66.667 0.00 0.00 0.00 3.95
763 778 2.224606 TGACGGACGAACTGTTCTAGT 58.775 47.619 17.60 9.50 42.89 2.57
766 781 1.402456 CGGACGAACTGTTCTAGTGGG 60.402 57.143 17.60 4.43 40.26 4.61
774 789 4.021102 ACTGTTCTAGTGGGGTTGATTG 57.979 45.455 0.00 0.00 38.49 2.67
839 854 9.667107 AGCAATCAGAATCAAAATCAAAATCAT 57.333 25.926 0.00 0.00 0.00 2.45
858 873 8.992835 AAATCATAACCTGAATCTTTCTTTGC 57.007 30.769 0.00 0.00 37.44 3.68
881 912 1.733718 GCCGATTGCTTGCTTCTTTCC 60.734 52.381 0.00 0.00 36.87 3.13
1083 1118 2.895424 CGAGGTGGAGGCAGGGTTT 61.895 63.158 0.00 0.00 0.00 3.27
1338 1373 2.303022 CCCTCCTGTTAAGCTTGACTCA 59.697 50.000 20.61 8.31 0.00 3.41
1672 1710 2.493278 GGAACATTGGGTGAAGGTGATG 59.507 50.000 0.00 0.00 0.00 3.07
1685 1723 3.589951 AGGTGATGCATTATCCTTGCT 57.410 42.857 0.00 0.00 40.77 3.91
1686 1724 3.484407 AGGTGATGCATTATCCTTGCTC 58.516 45.455 0.00 0.00 40.77 4.26
1687 1725 3.137913 AGGTGATGCATTATCCTTGCTCT 59.862 43.478 0.00 0.00 40.77 4.09
1688 1726 3.252701 GGTGATGCATTATCCTTGCTCTG 59.747 47.826 0.00 0.00 40.77 3.35
1689 1727 2.882761 TGATGCATTATCCTTGCTCTGC 59.117 45.455 0.00 0.00 40.77 4.26
1690 1728 2.423446 TGCATTATCCTTGCTCTGCA 57.577 45.000 0.00 0.00 40.77 4.41
1691 1729 2.940158 TGCATTATCCTTGCTCTGCAT 58.060 42.857 0.00 0.00 38.76 3.96
1692 1730 3.293337 TGCATTATCCTTGCTCTGCATT 58.707 40.909 0.00 0.00 38.76 3.56
1693 1731 3.702548 TGCATTATCCTTGCTCTGCATTT 59.297 39.130 0.00 0.00 38.76 2.32
1694 1732 4.160814 TGCATTATCCTTGCTCTGCATTTT 59.839 37.500 0.00 0.00 38.76 1.82
1695 1733 5.114081 GCATTATCCTTGCTCTGCATTTTT 58.886 37.500 0.00 0.00 38.76 1.94
1696 1734 5.006358 GCATTATCCTTGCTCTGCATTTTTG 59.994 40.000 0.00 0.00 38.76 2.44
1697 1735 2.443887 TCCTTGCTCTGCATTTTTGC 57.556 45.000 0.00 0.00 38.76 3.68
1698 1736 1.965643 TCCTTGCTCTGCATTTTTGCT 59.034 42.857 0.00 0.00 38.76 3.91
1699 1737 2.066262 CCTTGCTCTGCATTTTTGCTG 58.934 47.619 0.00 0.00 38.76 4.41
1700 1738 2.547218 CCTTGCTCTGCATTTTTGCTGT 60.547 45.455 0.00 0.00 38.76 4.40
1701 1739 3.305539 CCTTGCTCTGCATTTTTGCTGTA 60.306 43.478 0.00 0.00 38.76 2.74
1702 1740 4.491676 CTTGCTCTGCATTTTTGCTGTAT 58.508 39.130 0.00 0.00 38.76 2.29
1703 1741 5.393352 CCTTGCTCTGCATTTTTGCTGTATA 60.393 40.000 0.00 0.00 38.76 1.47
1704 1742 5.840243 TGCTCTGCATTTTTGCTGTATAT 57.160 34.783 0.00 0.00 31.71 0.86
1705 1743 6.940831 TGCTCTGCATTTTTGCTGTATATA 57.059 33.333 0.00 0.00 31.71 0.86
1706 1744 6.728200 TGCTCTGCATTTTTGCTGTATATAC 58.272 36.000 5.89 5.89 31.71 1.47
1707 1745 6.543465 TGCTCTGCATTTTTGCTGTATATACT 59.457 34.615 13.89 0.00 31.71 2.12
1708 1746 7.067372 TGCTCTGCATTTTTGCTGTATATACTT 59.933 33.333 13.89 0.00 31.71 2.24
1709 1747 7.589221 GCTCTGCATTTTTGCTGTATATACTTC 59.411 37.037 13.89 6.28 35.63 3.01
1710 1748 8.737168 TCTGCATTTTTGCTGTATATACTTCT 57.263 30.769 13.89 0.00 35.63 2.85
1711 1749 8.830580 TCTGCATTTTTGCTGTATATACTTCTC 58.169 33.333 13.89 1.87 35.63 2.87
1712 1750 7.930217 TGCATTTTTGCTGTATATACTTCTCC 58.070 34.615 13.89 0.00 35.49 3.71
1713 1751 7.775093 TGCATTTTTGCTGTATATACTTCTCCT 59.225 33.333 13.89 0.00 35.49 3.69
1714 1752 8.624776 GCATTTTTGCTGTATATACTTCTCCTT 58.375 33.333 13.89 0.00 0.00 3.36
1715 1753 9.941664 CATTTTTGCTGTATATACTTCTCCTTG 57.058 33.333 13.89 0.77 0.00 3.61
1716 1754 7.553881 TTTTGCTGTATATACTTCTCCTTGC 57.446 36.000 13.89 6.23 0.00 4.01
1722 1792 7.524532 GCTGTATATACTTCTCCTTGCTCATCA 60.525 40.741 13.89 0.00 0.00 3.07
1795 1892 5.801947 CACATTTAGCTGTACCTTTTCATGC 59.198 40.000 0.00 0.00 0.00 4.06
1834 1931 7.566760 AATGATTAAAGATGATACGCCAACA 57.433 32.000 0.00 0.00 0.00 3.33
1929 2030 7.265647 TCTCTTATGGAACTCTGATTAGACG 57.734 40.000 0.00 0.00 0.00 4.18
1930 2031 6.829298 TCTCTTATGGAACTCTGATTAGACGT 59.171 38.462 0.00 0.00 0.00 4.34
1931 2032 7.339721 TCTCTTATGGAACTCTGATTAGACGTT 59.660 37.037 0.00 3.22 31.47 3.99
1932 2033 8.515695 TCTTATGGAACTCTGATTAGACGTTA 57.484 34.615 0.00 0.00 30.03 3.18
1933 2034 8.963725 TCTTATGGAACTCTGATTAGACGTTAA 58.036 33.333 0.00 0.00 30.03 2.01
1934 2035 9.751542 CTTATGGAACTCTGATTAGACGTTAAT 57.248 33.333 0.00 0.00 30.03 1.40
1935 2036 9.745880 TTATGGAACTCTGATTAGACGTTAATC 57.254 33.333 16.79 16.79 35.20 1.75
1936 2037 7.165460 TGGAACTCTGATTAGACGTTAATCA 57.835 36.000 21.31 21.31 40.43 2.57
1945 2046 7.201145 TGATTAGACGTTAATCAGTTAGAGGC 58.799 38.462 19.94 0.00 38.55 4.70
1946 2047 6.770746 TTAGACGTTAATCAGTTAGAGGCT 57.229 37.500 0.00 0.00 0.00 4.58
1947 2048 7.870509 TTAGACGTTAATCAGTTAGAGGCTA 57.129 36.000 0.00 0.00 0.00 3.93
1948 2049 6.380095 AGACGTTAATCAGTTAGAGGCTAG 57.620 41.667 0.00 0.00 0.00 3.42
1949 2050 4.934515 ACGTTAATCAGTTAGAGGCTAGC 58.065 43.478 6.04 6.04 0.00 3.42
1950 2051 4.645588 ACGTTAATCAGTTAGAGGCTAGCT 59.354 41.667 15.72 0.00 0.00 3.32
1951 2052 4.979197 CGTTAATCAGTTAGAGGCTAGCTG 59.021 45.833 15.72 10.80 0.00 4.24
1952 2053 5.450688 CGTTAATCAGTTAGAGGCTAGCTGT 60.451 44.000 15.72 1.74 0.00 4.40
1953 2054 6.342111 GTTAATCAGTTAGAGGCTAGCTGTT 58.658 40.000 15.72 11.74 0.00 3.16
1954 2055 5.428184 AATCAGTTAGAGGCTAGCTGTTT 57.572 39.130 15.72 11.39 0.00 2.83
1955 2056 4.457834 TCAGTTAGAGGCTAGCTGTTTC 57.542 45.455 15.72 7.71 0.00 2.78
1956 2057 4.090090 TCAGTTAGAGGCTAGCTGTTTCT 58.910 43.478 15.72 14.19 0.00 2.52
1957 2058 4.158764 TCAGTTAGAGGCTAGCTGTTTCTC 59.841 45.833 15.72 11.96 0.00 2.87
1958 2059 4.159506 CAGTTAGAGGCTAGCTGTTTCTCT 59.840 45.833 19.91 19.91 38.26 3.10
1959 2060 4.401202 AGTTAGAGGCTAGCTGTTTCTCTC 59.599 45.833 19.70 13.41 36.39 3.20
1969 2070 1.548269 CTGTTTCTCTCTCTCGGGCTT 59.452 52.381 0.00 0.00 0.00 4.35
1971 2072 0.898320 TTTCTCTCTCTCGGGCTTGG 59.102 55.000 0.00 0.00 0.00 3.61
1987 2091 0.108520 TTGGGCGACTAAACCTAGCG 60.109 55.000 0.00 0.00 0.00 4.26
1988 2092 0.966875 TGGGCGACTAAACCTAGCGA 60.967 55.000 0.00 0.00 30.82 4.93
2019 2126 1.604378 CTCATCCGCCACCTTCCTT 59.396 57.895 0.00 0.00 0.00 3.36
2049 2157 3.569049 CTCCGCCGACGACTTGGTT 62.569 63.158 0.00 0.00 43.93 3.67
2119 2227 4.648307 GCTTTAGGTTAGACCCTAGTAGCA 59.352 45.833 13.86 0.00 41.49 3.49
2197 2305 8.681806 GCTTAATAAAGAAGCTTCAGATCCTTT 58.318 33.333 27.57 18.87 44.83 3.11
2276 2391 4.408821 GGATGGTGTGGCGGCAGA 62.409 66.667 13.91 8.90 0.00 4.26
2365 2480 1.380112 GAGCGTGGGAGGTAGTCCT 60.380 63.158 0.00 0.00 46.06 3.85
2423 2539 2.430694 CTGGAAGATGGTGGATCGTGTA 59.569 50.000 0.00 0.00 36.04 2.90
2498 2615 2.382770 TGCGGGGGTGCCAGATATT 61.383 57.895 0.00 0.00 0.00 1.28
2539 2656 0.893727 GTGTTGCCCCGGTCTGATTT 60.894 55.000 0.00 0.00 0.00 2.17
2555 2672 4.083003 TCTGATTTGTTCAACGGTAATGGC 60.083 41.667 0.00 0.00 32.78 4.40
2647 2765 3.529533 GTGAGGAGGTGATCTGTCATTG 58.470 50.000 0.00 0.00 36.60 2.82
2649 2767 3.055602 TGAGGAGGTGATCTGTCATTGTG 60.056 47.826 0.00 0.00 36.60 3.33
2650 2768 2.909006 AGGAGGTGATCTGTCATTGTGT 59.091 45.455 0.00 0.00 36.60 3.72
2651 2769 3.055530 AGGAGGTGATCTGTCATTGTGTC 60.056 47.826 0.00 0.00 36.60 3.67
2652 2770 3.265791 GAGGTGATCTGTCATTGTGTCC 58.734 50.000 0.00 0.00 36.60 4.02
2714 2839 2.427506 GTTGGTGTCAAGCTTAGAGGG 58.572 52.381 0.00 0.00 32.92 4.30
2717 2842 2.441750 TGGTGTCAAGCTTAGAGGGTTT 59.558 45.455 0.00 0.00 0.00 3.27
2731 2856 3.086282 GAGGGTTTTTCGGCCTTGATTA 58.914 45.455 0.00 0.00 0.00 1.75
2814 2940 4.081087 ACTTTTGTCAGGTCAGTGTGTACT 60.081 41.667 0.00 0.00 37.75 2.73
2817 2943 2.764010 TGTCAGGTCAGTGTGTACTTGT 59.236 45.455 0.00 0.00 34.07 3.16
2818 2944 3.955551 TGTCAGGTCAGTGTGTACTTGTA 59.044 43.478 0.00 0.00 34.07 2.41
2819 2945 4.202080 TGTCAGGTCAGTGTGTACTTGTAC 60.202 45.833 4.14 4.14 34.07 2.90
2973 3140 6.968131 TGTGTAAACATAACTGCATCTCTC 57.032 37.500 0.00 0.00 0.00 3.20
3084 3255 5.168526 TGTCTTGACGTTTTCCATTCTTG 57.831 39.130 0.00 0.00 0.00 3.02
3150 3413 8.322091 TCTATCACTATAGCAGCTGACATACTA 58.678 37.037 20.43 9.25 35.90 1.82
3151 3414 7.953005 ATCACTATAGCAGCTGACATACTAT 57.047 36.000 20.43 15.87 0.00 2.12
3153 3416 8.270080 TCACTATAGCAGCTGACATACTATAC 57.730 38.462 20.43 0.00 0.00 1.47
3154 3417 8.103935 TCACTATAGCAGCTGACATACTATACT 58.896 37.037 20.43 2.97 0.00 2.12
3155 3418 8.735315 CACTATAGCAGCTGACATACTATACTT 58.265 37.037 20.43 3.89 0.00 2.24
3302 3693 7.725251 TCTGTTTATTTCAGCTTTGTCCATTT 58.275 30.769 0.00 0.00 33.48 2.32
3357 3752 8.567948 GTGAGGAAGTATTTGTTTGATCTGAAA 58.432 33.333 0.00 0.00 0.00 2.69
3581 3982 8.088365 CACATATTTCGTATCCCACTTCTATGA 58.912 37.037 0.00 0.00 0.00 2.15
3637 4038 3.439129 CCAAATTAGTCCAACCCGTCTTC 59.561 47.826 0.00 0.00 0.00 2.87
3954 4375 3.889196 TGGACGCATTTTAGTGTGTTC 57.111 42.857 0.00 0.00 42.45 3.18
3957 4378 3.466836 GACGCATTTTAGTGTGTTCGTC 58.533 45.455 0.00 0.00 42.45 4.20
3962 4383 4.772434 CATTTTAGTGTGTTCGTCCACTG 58.228 43.478 2.72 0.00 41.77 3.66
4205 7320 2.884012 TCACTCCGAACATGTTTTGCAT 59.116 40.909 13.36 0.00 38.60 3.96
4402 7530 4.653341 CCTCTCTATTCTGGTTCAGGTCAT 59.347 45.833 0.00 0.00 31.51 3.06
4556 8559 7.246674 ACTGTTACAGTTACAATCAGTGTTG 57.753 36.000 12.76 0.00 42.59 3.33
4846 8849 1.939934 GCTTTGCTTGGGTTTTGTTCC 59.060 47.619 0.00 0.00 0.00 3.62
4999 9002 7.173047 TGGTTTCTTCCGTGTTTTTACCTATAC 59.827 37.037 0.00 0.00 0.00 1.47
5001 9004 6.610075 TCTTCCGTGTTTTTACCTATACCT 57.390 37.500 0.00 0.00 0.00 3.08
5043 9046 3.869065 TGCGGAAACAGGACTTATAAGG 58.131 45.455 16.73 1.53 0.00 2.69
5076 9081 3.374220 TCGCGTCTCTTCAGGTTTAAA 57.626 42.857 5.77 0.00 0.00 1.52
5095 9100 6.628919 TTAAAGTTGCCTCTTTGAACTACC 57.371 37.500 11.71 0.00 38.02 3.18
5188 9200 4.704833 TTCCCAGCAGCAGCCGTC 62.705 66.667 0.00 0.00 43.56 4.79
5228 9240 3.580193 CCGTGCCTAGCATGCTGC 61.580 66.667 30.42 24.78 43.41 5.25
5240 9252 1.990799 CATGCTGCTCCATTGTTGTG 58.009 50.000 0.00 0.00 0.00 3.33
5241 9253 0.892755 ATGCTGCTCCATTGTTGTGG 59.107 50.000 0.00 0.00 40.76 4.17
5242 9254 0.467844 TGCTGCTCCATTGTTGTGGT 60.468 50.000 0.00 0.00 40.27 4.16
5243 9255 0.038892 GCTGCTCCATTGTTGTGGTG 60.039 55.000 0.00 0.00 40.27 4.17
5244 9256 0.599558 CTGCTCCATTGTTGTGGTGG 59.400 55.000 0.00 0.00 40.27 4.61
5276 9288 2.158957 TCTGAGACAAGTTGTGGTGGTC 60.159 50.000 14.57 2.95 0.00 4.02
5370 10827 2.224042 GGCCCAGGAGAAAACAAAAGTG 60.224 50.000 0.00 0.00 0.00 3.16
5442 11091 2.267188 AAAGTGCGCAATGCTACATG 57.733 45.000 14.00 0.00 46.63 3.21
5516 11167 6.641176 TTTGTGTGTAATGCTACATCTACG 57.359 37.500 0.00 0.00 40.16 3.51
5519 11170 3.955551 TGTGTAATGCTACATCTACGGGA 59.044 43.478 0.00 0.00 40.16 5.14
5523 11174 4.755266 AATGCTACATCTACGGGAAGTT 57.245 40.909 0.00 0.00 0.00 2.66
5524 11175 4.755266 ATGCTACATCTACGGGAAGTTT 57.245 40.909 0.00 0.00 0.00 2.66
5525 11176 4.119442 TGCTACATCTACGGGAAGTTTC 57.881 45.455 0.00 0.00 0.00 2.78
5526 11177 3.767673 TGCTACATCTACGGGAAGTTTCT 59.232 43.478 0.00 0.00 0.00 2.52
5527 11178 4.222145 TGCTACATCTACGGGAAGTTTCTT 59.778 41.667 0.00 0.00 0.00 2.52
5528 11179 5.419788 TGCTACATCTACGGGAAGTTTCTTA 59.580 40.000 0.00 0.00 0.00 2.10
5529 11180 5.747675 GCTACATCTACGGGAAGTTTCTTAC 59.252 44.000 0.00 0.00 0.00 2.34
5530 11181 4.741342 ACATCTACGGGAAGTTTCTTACG 58.259 43.478 0.00 0.00 0.00 3.18
5531 11182 3.855689 TCTACGGGAAGTTTCTTACGG 57.144 47.619 9.53 4.95 0.00 4.02
5532 11183 3.420893 TCTACGGGAAGTTTCTTACGGA 58.579 45.455 6.34 0.18 0.00 4.69
5533 11184 2.445565 ACGGGAAGTTTCTTACGGAC 57.554 50.000 6.34 0.00 0.00 4.79
5534 11185 1.966354 ACGGGAAGTTTCTTACGGACT 59.034 47.619 6.34 0.00 0.00 3.85
5535 11186 2.288640 ACGGGAAGTTTCTTACGGACTG 60.289 50.000 6.34 0.00 0.00 3.51
5536 11187 2.029649 CGGGAAGTTTCTTACGGACTGA 60.030 50.000 0.00 0.00 0.00 3.41
5537 11188 3.553508 CGGGAAGTTTCTTACGGACTGAA 60.554 47.826 0.00 0.00 0.00 3.02
5538 11189 4.576879 GGGAAGTTTCTTACGGACTGAAT 58.423 43.478 0.00 0.00 0.00 2.57
5539 11190 5.001874 GGGAAGTTTCTTACGGACTGAATT 58.998 41.667 0.00 0.00 0.00 2.17
5540 11191 5.472478 GGGAAGTTTCTTACGGACTGAATTT 59.528 40.000 0.00 0.00 0.00 1.82
5541 11192 6.652062 GGGAAGTTTCTTACGGACTGAATTTA 59.348 38.462 0.00 0.00 0.00 1.40
5542 11193 7.360691 GGGAAGTTTCTTACGGACTGAATTTAC 60.361 40.741 0.00 0.00 0.00 2.01
5543 11194 6.701432 AGTTTCTTACGGACTGAATTTACG 57.299 37.500 0.00 0.00 0.00 3.18
5544 11195 6.449698 AGTTTCTTACGGACTGAATTTACGA 58.550 36.000 0.00 0.00 0.00 3.43
5545 11196 6.585322 AGTTTCTTACGGACTGAATTTACGAG 59.415 38.462 0.00 0.00 0.00 4.18
5546 11197 5.885230 TCTTACGGACTGAATTTACGAGA 57.115 39.130 0.00 0.00 0.00 4.04
5547 11198 6.446781 TCTTACGGACTGAATTTACGAGAT 57.553 37.500 0.00 0.00 0.00 2.75
5548 11199 6.493116 TCTTACGGACTGAATTTACGAGATC 58.507 40.000 0.00 0.00 0.00 2.75
5549 11200 4.713824 ACGGACTGAATTTACGAGATCA 57.286 40.909 0.00 0.00 0.00 2.92
5550 11201 4.673441 ACGGACTGAATTTACGAGATCAG 58.327 43.478 0.00 0.00 43.79 2.90
5556 11207 6.727824 CTGAATTTACGAGATCAGTTGGTT 57.272 37.500 0.00 0.00 35.65 3.67
5557 11208 6.480524 TGAATTTACGAGATCAGTTGGTTG 57.519 37.500 0.00 0.00 0.00 3.77
5558 11209 5.411361 TGAATTTACGAGATCAGTTGGTTGG 59.589 40.000 0.00 0.00 0.00 3.77
5559 11210 2.380084 TACGAGATCAGTTGGTTGGC 57.620 50.000 0.00 0.00 0.00 4.52
5560 11211 0.687354 ACGAGATCAGTTGGTTGGCT 59.313 50.000 0.00 0.00 0.00 4.75
5561 11212 1.081892 CGAGATCAGTTGGTTGGCTG 58.918 55.000 0.00 0.00 0.00 4.85
5562 11213 1.457346 GAGATCAGTTGGTTGGCTGG 58.543 55.000 0.00 0.00 33.81 4.85
5563 11214 0.610232 AGATCAGTTGGTTGGCTGGC 60.610 55.000 0.00 0.00 33.81 4.85
5564 11215 0.610232 GATCAGTTGGTTGGCTGGCT 60.610 55.000 2.00 0.00 33.81 4.75
5565 11216 0.610232 ATCAGTTGGTTGGCTGGCTC 60.610 55.000 2.00 0.00 33.81 4.70
5566 11217 1.529010 CAGTTGGTTGGCTGGCTCA 60.529 57.895 2.00 0.00 0.00 4.26
5567 11218 0.896940 CAGTTGGTTGGCTGGCTCAT 60.897 55.000 2.00 0.00 0.00 2.90
5568 11219 0.698238 AGTTGGTTGGCTGGCTCATA 59.302 50.000 2.00 0.00 0.00 2.15
5569 11220 1.098050 GTTGGTTGGCTGGCTCATAG 58.902 55.000 2.00 0.00 0.00 2.23
5570 11221 0.698238 TTGGTTGGCTGGCTCATAGT 59.302 50.000 2.00 0.00 0.00 2.12
5571 11222 0.035152 TGGTTGGCTGGCTCATAGTG 60.035 55.000 2.00 0.00 0.00 2.74
5572 11223 0.253044 GGTTGGCTGGCTCATAGTGA 59.747 55.000 2.00 0.00 0.00 3.41
5573 11224 1.340017 GGTTGGCTGGCTCATAGTGAA 60.340 52.381 2.00 0.00 0.00 3.18
5574 11225 2.436417 GTTGGCTGGCTCATAGTGAAA 58.564 47.619 2.00 0.00 0.00 2.69
5575 11226 2.819608 GTTGGCTGGCTCATAGTGAAAA 59.180 45.455 2.00 0.00 0.00 2.29
5576 11227 3.370840 TGGCTGGCTCATAGTGAAAAT 57.629 42.857 2.00 0.00 0.00 1.82
5577 11228 3.282021 TGGCTGGCTCATAGTGAAAATC 58.718 45.455 2.00 0.00 0.00 2.17
5578 11229 3.282021 GGCTGGCTCATAGTGAAAATCA 58.718 45.455 0.00 0.00 0.00 2.57
5597 11248 1.576421 CTTGAGAACAAGGCGTGCC 59.424 57.895 1.67 1.67 46.67 5.01
5598 11249 1.856265 CTTGAGAACAAGGCGTGCCC 61.856 60.000 7.39 0.00 46.67 5.36
5599 11250 3.056328 GAGAACAAGGCGTGCCCC 61.056 66.667 7.39 0.00 36.58 5.80
5600 11251 3.553095 GAGAACAAGGCGTGCCCCT 62.553 63.158 7.39 0.00 36.58 4.79
5601 11252 3.365265 GAACAAGGCGTGCCCCTG 61.365 66.667 7.39 8.10 34.80 4.45
5602 11253 4.204028 AACAAGGCGTGCCCCTGT 62.204 61.111 7.39 8.77 34.80 4.00
5603 11254 3.731766 AACAAGGCGTGCCCCTGTT 62.732 57.895 18.35 18.35 37.63 3.16
5604 11255 3.673484 CAAGGCGTGCCCCTGTTG 61.673 66.667 7.39 1.63 34.80 3.33
5605 11256 4.974721 AAGGCGTGCCCCTGTTGG 62.975 66.667 7.39 0.00 34.80 3.77
5633 11284 4.569180 AGCCAGCCTGCACGTGTT 62.569 61.111 18.38 0.00 0.00 3.32
5634 11285 4.030452 GCCAGCCTGCACGTGTTC 62.030 66.667 18.38 1.32 0.00 3.18
5657 11308 0.827089 CCTTGGTTGGCACATGGTGA 60.827 55.000 0.00 0.00 39.30 4.02
5748 11399 7.927629 TGAAATCAAGCTGAGTTTAGCATTTTT 59.072 29.630 0.00 0.00 46.07 1.94
5775 11426 8.529911 GTTCTAAAATCGACTCCTAATACAACG 58.470 37.037 0.00 0.00 0.00 4.10
5794 11445 1.719780 CGTCCTTGTTAAGTCACGCTC 59.280 52.381 0.00 0.00 0.00 5.03
5800 11451 4.753107 CCTTGTTAAGTCACGCTCCTTTTA 59.247 41.667 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.171455 CCTCCTCTCAAACGACCTCG 59.829 60.000 0.00 0.00 46.33 4.63
1 2 1.067495 CACCTCCTCTCAAACGACCTC 60.067 57.143 0.00 0.00 0.00 3.85
2 3 0.969894 CACCTCCTCTCAAACGACCT 59.030 55.000 0.00 0.00 0.00 3.85
3 4 0.966920 TCACCTCCTCTCAAACGACC 59.033 55.000 0.00 0.00 0.00 4.79
4 5 1.067495 CCTCACCTCCTCTCAAACGAC 60.067 57.143 0.00 0.00 0.00 4.34
5 6 1.257743 CCTCACCTCCTCTCAAACGA 58.742 55.000 0.00 0.00 0.00 3.85
6 7 0.969894 ACCTCACCTCCTCTCAAACG 59.030 55.000 0.00 0.00 0.00 3.60
7 8 1.971357 TGACCTCACCTCCTCTCAAAC 59.029 52.381 0.00 0.00 0.00 2.93
8 9 2.398754 TGACCTCACCTCCTCTCAAA 57.601 50.000 0.00 0.00 0.00 2.69
9 10 2.398754 TTGACCTCACCTCCTCTCAA 57.601 50.000 0.00 0.00 0.00 3.02
10 11 2.251818 CTTTGACCTCACCTCCTCTCA 58.748 52.381 0.00 0.00 0.00 3.27
11 12 1.552792 CCTTTGACCTCACCTCCTCTC 59.447 57.143 0.00 0.00 0.00 3.20
12 13 1.150135 TCCTTTGACCTCACCTCCTCT 59.850 52.381 0.00 0.00 0.00 3.69
13 14 1.276705 GTCCTTTGACCTCACCTCCTC 59.723 57.143 0.00 0.00 35.34 3.71
14 15 1.353091 GTCCTTTGACCTCACCTCCT 58.647 55.000 0.00 0.00 35.34 3.69
15 16 0.037232 CGTCCTTTGACCTCACCTCC 60.037 60.000 0.00 0.00 38.32 4.30
16 17 0.966920 TCGTCCTTTGACCTCACCTC 59.033 55.000 0.00 0.00 38.32 3.85
17 18 0.969894 CTCGTCCTTTGACCTCACCT 59.030 55.000 0.00 0.00 38.32 4.00
18 19 0.037232 CCTCGTCCTTTGACCTCACC 60.037 60.000 0.00 0.00 38.32 4.02
19 20 0.037232 CCCTCGTCCTTTGACCTCAC 60.037 60.000 0.00 0.00 38.32 3.51
20 21 0.178944 TCCCTCGTCCTTTGACCTCA 60.179 55.000 0.00 0.00 38.32 3.86
21 22 1.137282 GATCCCTCGTCCTTTGACCTC 59.863 57.143 0.00 0.00 38.32 3.85
22 23 1.196012 GATCCCTCGTCCTTTGACCT 58.804 55.000 0.00 0.00 38.32 3.85
23 24 0.179108 CGATCCCTCGTCCTTTGACC 60.179 60.000 0.00 0.00 40.07 4.02
24 25 3.347411 CGATCCCTCGTCCTTTGAC 57.653 57.895 0.00 0.00 40.07 3.18
34 35 4.460948 TTAAAGTACCACACGATCCCTC 57.539 45.455 0.00 0.00 0.00 4.30
35 36 4.895668 TTTAAAGTACCACACGATCCCT 57.104 40.909 0.00 0.00 0.00 4.20
36 37 5.644636 TCATTTTAAAGTACCACACGATCCC 59.355 40.000 0.00 0.00 0.00 3.85
37 38 6.730960 TCATTTTAAAGTACCACACGATCC 57.269 37.500 0.00 0.00 0.00 3.36
38 39 8.500773 TCTTTCATTTTAAAGTACCACACGATC 58.499 33.333 0.00 0.00 37.65 3.69
39 40 8.385898 TCTTTCATTTTAAAGTACCACACGAT 57.614 30.769 0.00 0.00 37.65 3.73
40 41 7.789273 TCTTTCATTTTAAAGTACCACACGA 57.211 32.000 0.00 0.00 37.65 4.35
41 42 8.126700 ACTTCTTTCATTTTAAAGTACCACACG 58.873 33.333 0.00 0.00 37.65 4.49
49 50 9.628500 ACACCTCTACTTCTTTCATTTTAAAGT 57.372 29.630 0.00 0.00 37.65 2.66
50 51 9.884465 CACACCTCTACTTCTTTCATTTTAAAG 57.116 33.333 0.00 0.00 37.73 1.85
51 52 9.621629 TCACACCTCTACTTCTTTCATTTTAAA 57.378 29.630 0.00 0.00 0.00 1.52
52 53 9.052759 GTCACACCTCTACTTCTTTCATTTTAA 57.947 33.333 0.00 0.00 0.00 1.52
53 54 8.208224 TGTCACACCTCTACTTCTTTCATTTTA 58.792 33.333 0.00 0.00 0.00 1.52
54 55 7.054124 TGTCACACCTCTACTTCTTTCATTTT 58.946 34.615 0.00 0.00 0.00 1.82
55 56 6.591935 TGTCACACCTCTACTTCTTTCATTT 58.408 36.000 0.00 0.00 0.00 2.32
56 57 6.174720 TGTCACACCTCTACTTCTTTCATT 57.825 37.500 0.00 0.00 0.00 2.57
57 58 5.305644 ACTGTCACACCTCTACTTCTTTCAT 59.694 40.000 0.00 0.00 0.00 2.57
58 59 4.649674 ACTGTCACACCTCTACTTCTTTCA 59.350 41.667 0.00 0.00 0.00 2.69
59 60 5.203060 ACTGTCACACCTCTACTTCTTTC 57.797 43.478 0.00 0.00 0.00 2.62
60 61 5.615925 AACTGTCACACCTCTACTTCTTT 57.384 39.130 0.00 0.00 0.00 2.52
61 62 5.615925 AAACTGTCACACCTCTACTTCTT 57.384 39.130 0.00 0.00 0.00 2.52
62 63 5.360591 CAAAACTGTCACACCTCTACTTCT 58.639 41.667 0.00 0.00 0.00 2.85
63 64 4.024809 GCAAAACTGTCACACCTCTACTTC 60.025 45.833 0.00 0.00 0.00 3.01
64 65 3.877508 GCAAAACTGTCACACCTCTACTT 59.122 43.478 0.00 0.00 0.00 2.24
65 66 3.134804 AGCAAAACTGTCACACCTCTACT 59.865 43.478 0.00 0.00 0.00 2.57
66 67 3.467803 AGCAAAACTGTCACACCTCTAC 58.532 45.455 0.00 0.00 0.00 2.59
67 68 3.838244 AGCAAAACTGTCACACCTCTA 57.162 42.857 0.00 0.00 0.00 2.43
68 69 2.717639 AGCAAAACTGTCACACCTCT 57.282 45.000 0.00 0.00 0.00 3.69
69 70 6.403636 CCATATAAGCAAAACTGTCACACCTC 60.404 42.308 0.00 0.00 0.00 3.85
70 71 5.415701 CCATATAAGCAAAACTGTCACACCT 59.584 40.000 0.00 0.00 0.00 4.00
71 72 5.640732 CCATATAAGCAAAACTGTCACACC 58.359 41.667 0.00 0.00 0.00 4.16
72 73 5.095490 GCCATATAAGCAAAACTGTCACAC 58.905 41.667 0.00 0.00 0.00 3.82
73 74 4.764308 TGCCATATAAGCAAAACTGTCACA 59.236 37.500 0.00 0.00 37.28 3.58
74 75 5.095490 GTGCCATATAAGCAAAACTGTCAC 58.905 41.667 2.62 0.00 43.02 3.67
75 76 4.764308 TGTGCCATATAAGCAAAACTGTCA 59.236 37.500 2.62 0.00 43.02 3.58
76 77 5.095490 GTGTGCCATATAAGCAAAACTGTC 58.905 41.667 2.62 0.00 43.02 3.51
77 78 4.379394 CGTGTGCCATATAAGCAAAACTGT 60.379 41.667 2.62 0.00 43.02 3.55
78 79 4.097714 CGTGTGCCATATAAGCAAAACTG 58.902 43.478 2.62 0.27 43.02 3.16
79 80 3.756434 ACGTGTGCCATATAAGCAAAACT 59.244 39.130 2.62 0.00 43.02 2.66
80 81 3.851403 CACGTGTGCCATATAAGCAAAAC 59.149 43.478 7.58 4.43 43.02 2.43
81 82 3.504134 ACACGTGTGCCATATAAGCAAAA 59.496 39.130 22.71 0.00 43.02 2.44
82 83 3.078097 ACACGTGTGCCATATAAGCAAA 58.922 40.909 22.71 0.00 43.02 3.68
83 84 2.418280 CACACGTGTGCCATATAAGCAA 59.582 45.455 33.52 0.00 43.02 3.91
84 85 2.006169 CACACGTGTGCCATATAAGCA 58.994 47.619 33.52 0.00 39.39 3.91
85 86 2.737467 CACACGTGTGCCATATAAGC 57.263 50.000 33.52 0.00 39.39 3.09
96 97 2.483877 CTGTGATATTTGGCACACGTGT 59.516 45.455 17.22 17.22 39.86 4.49
97 98 2.483877 ACTGTGATATTTGGCACACGTG 59.516 45.455 15.48 15.48 39.86 4.49
98 99 2.742053 GACTGTGATATTTGGCACACGT 59.258 45.455 0.00 0.00 39.86 4.49
99 100 2.095853 GGACTGTGATATTTGGCACACG 59.904 50.000 0.00 0.00 39.86 4.49
100 101 3.347216 AGGACTGTGATATTTGGCACAC 58.653 45.455 0.00 0.00 39.86 3.82
101 102 3.719268 AGGACTGTGATATTTGGCACA 57.281 42.857 0.00 0.00 42.25 4.57
102 103 5.391312 AAAAGGACTGTGATATTTGGCAC 57.609 39.130 0.00 0.00 35.63 5.01
103 104 5.774690 AGAAAAAGGACTGTGATATTTGGCA 59.225 36.000 0.00 0.00 0.00 4.92
104 105 6.272822 AGAAAAAGGACTGTGATATTTGGC 57.727 37.500 0.00 0.00 0.00 4.52
124 125 8.248253 GCCGGAAAAGGAAAAGAATAAATAGAA 58.752 33.333 5.05 0.00 0.00 2.10
125 126 7.147966 GGCCGGAAAAGGAAAAGAATAAATAGA 60.148 37.037 5.05 0.00 0.00 1.98
126 127 6.978659 GGCCGGAAAAGGAAAAGAATAAATAG 59.021 38.462 5.05 0.00 0.00 1.73
127 128 6.666113 AGGCCGGAAAAGGAAAAGAATAAATA 59.334 34.615 5.05 0.00 0.00 1.40
128 129 5.483937 AGGCCGGAAAAGGAAAAGAATAAAT 59.516 36.000 5.05 0.00 0.00 1.40
129 130 4.836175 AGGCCGGAAAAGGAAAAGAATAAA 59.164 37.500 5.05 0.00 0.00 1.40
130 131 4.412843 AGGCCGGAAAAGGAAAAGAATAA 58.587 39.130 5.05 0.00 0.00 1.40
131 132 4.042271 AGGCCGGAAAAGGAAAAGAATA 57.958 40.909 5.05 0.00 0.00 1.75
132 133 2.889512 AGGCCGGAAAAGGAAAAGAAT 58.110 42.857 5.05 0.00 0.00 2.40
133 134 2.375014 AGGCCGGAAAAGGAAAAGAA 57.625 45.000 5.05 0.00 0.00 2.52
134 135 2.375014 AAGGCCGGAAAAGGAAAAGA 57.625 45.000 5.05 0.00 0.00 2.52
135 136 4.801330 AATAAGGCCGGAAAAGGAAAAG 57.199 40.909 5.05 0.00 0.00 2.27
136 137 5.554437 AAAATAAGGCCGGAAAAGGAAAA 57.446 34.783 5.05 0.00 0.00 2.29
137 138 5.070580 TGAAAAATAAGGCCGGAAAAGGAAA 59.929 36.000 5.05 0.00 0.00 3.13
138 139 4.589374 TGAAAAATAAGGCCGGAAAAGGAA 59.411 37.500 5.05 0.00 0.00 3.36
139 140 4.153411 TGAAAAATAAGGCCGGAAAAGGA 58.847 39.130 5.05 0.00 0.00 3.36
140 141 4.529109 TGAAAAATAAGGCCGGAAAAGG 57.471 40.909 5.05 0.00 0.00 3.11
141 142 8.197439 AGAATATGAAAAATAAGGCCGGAAAAG 58.803 33.333 5.05 0.00 0.00 2.27
142 143 8.073467 AGAATATGAAAAATAAGGCCGGAAAA 57.927 30.769 5.05 0.00 0.00 2.29
143 144 7.654022 AGAATATGAAAAATAAGGCCGGAAA 57.346 32.000 5.05 0.00 0.00 3.13
144 145 8.792633 CATAGAATATGAAAAATAAGGCCGGAA 58.207 33.333 5.05 0.00 0.00 4.30
145 146 8.160765 TCATAGAATATGAAAAATAAGGCCGGA 58.839 33.333 5.05 0.00 0.00 5.14
146 147 8.335532 TCATAGAATATGAAAAATAAGGCCGG 57.664 34.615 0.00 0.00 0.00 6.13
147 148 9.778993 CATCATAGAATATGAAAAATAAGGCCG 57.221 33.333 0.00 0.00 0.00 6.13
375 382 0.179187 CTCACGACCAGCGAGTACTG 60.179 60.000 0.00 0.00 44.57 2.74
420 429 5.465390 CCCGATACTAATTCAATTTGCGAGA 59.535 40.000 0.00 0.00 0.00 4.04
455 464 3.865745 GTGTACCATCACCTGAATCTTCG 59.134 47.826 0.00 0.00 32.81 3.79
474 483 0.743345 GCCGGAATTCTAAGCGGTGT 60.743 55.000 18.23 0.00 0.00 4.16
526 535 3.847184 AGGGAGAGGGGAACTTTCTTTAG 59.153 47.826 0.00 0.00 31.27 1.85
584 593 2.669240 GAACGGGAGTGGGGAAGG 59.331 66.667 0.00 0.00 46.69 3.46
598 607 3.327626 GGGGAAGAGAAGAAGAACGAAC 58.672 50.000 0.00 0.00 0.00 3.95
599 608 2.029290 CGGGGAAGAGAAGAAGAACGAA 60.029 50.000 0.00 0.00 0.00 3.85
605 614 2.409948 ATTGCGGGGAAGAGAAGAAG 57.590 50.000 0.00 0.00 0.00 2.85
786 801 4.872552 GCCACAGCAAGGAAAGAATCCAA 61.873 47.826 0.00 0.00 44.83 3.53
787 802 3.402355 GCCACAGCAAGGAAAGAATCCA 61.402 50.000 0.00 0.00 44.83 3.41
839 854 4.154195 GCGAGCAAAGAAAGATTCAGGTTA 59.846 41.667 0.00 0.00 0.00 2.85
881 912 7.307989 CCAAGGAACAGAATAATTAGTATGGCG 60.308 40.741 11.74 0.00 0.00 5.69
954 989 1.144057 CCGACAAGATTAGCCGCCT 59.856 57.895 0.00 0.00 0.00 5.52
967 1002 0.248289 GGACCCTCGATTTTCCGACA 59.752 55.000 0.00 0.00 34.56 4.35
1083 1118 3.855503 CTCACCCTGCAGCTTGGCA 62.856 63.158 8.66 0.00 42.53 4.92
1672 1710 4.317671 AAATGCAGAGCAAGGATAATGC 57.682 40.909 0.00 0.00 43.62 3.56
1685 1723 8.737168 AGAAGTATATACAGCAAAAATGCAGA 57.263 30.769 15.18 0.00 37.25 4.26
1686 1724 8.072567 GGAGAAGTATATACAGCAAAAATGCAG 58.927 37.037 15.18 0.00 37.25 4.41
1687 1725 7.775093 AGGAGAAGTATATACAGCAAAAATGCA 59.225 33.333 15.18 0.00 37.25 3.96
1688 1726 8.159344 AGGAGAAGTATATACAGCAAAAATGC 57.841 34.615 15.18 0.00 0.00 3.56
1689 1727 9.941664 CAAGGAGAAGTATATACAGCAAAAATG 57.058 33.333 15.18 2.08 0.00 2.32
1690 1728 8.624776 GCAAGGAGAAGTATATACAGCAAAAAT 58.375 33.333 15.18 0.00 0.00 1.82
1691 1729 7.829211 AGCAAGGAGAAGTATATACAGCAAAAA 59.171 33.333 15.18 0.00 0.00 1.94
1692 1730 7.338710 AGCAAGGAGAAGTATATACAGCAAAA 58.661 34.615 15.18 0.00 0.00 2.44
1693 1731 6.889198 AGCAAGGAGAAGTATATACAGCAAA 58.111 36.000 15.18 0.00 0.00 3.68
1694 1732 6.098266 TGAGCAAGGAGAAGTATATACAGCAA 59.902 38.462 15.18 0.00 0.00 3.91
1695 1733 5.598417 TGAGCAAGGAGAAGTATATACAGCA 59.402 40.000 15.18 0.00 0.00 4.41
1696 1734 6.090483 TGAGCAAGGAGAAGTATATACAGC 57.910 41.667 15.18 6.31 0.00 4.40
1697 1735 7.890515 TGATGAGCAAGGAGAAGTATATACAG 58.109 38.462 15.18 0.00 0.00 2.74
1698 1736 7.839680 TGATGAGCAAGGAGAAGTATATACA 57.160 36.000 15.18 0.00 0.00 2.29
1699 1737 8.748412 AGATGATGAGCAAGGAGAAGTATATAC 58.252 37.037 4.60 4.60 0.00 1.47
1700 1738 8.891985 AGATGATGAGCAAGGAGAAGTATATA 57.108 34.615 0.00 0.00 0.00 0.86
1701 1739 7.795534 AGATGATGAGCAAGGAGAAGTATAT 57.204 36.000 0.00 0.00 0.00 0.86
1702 1740 7.070447 ACAAGATGATGAGCAAGGAGAAGTATA 59.930 37.037 0.00 0.00 0.00 1.47
1703 1741 6.126825 ACAAGATGATGAGCAAGGAGAAGTAT 60.127 38.462 0.00 0.00 0.00 2.12
1704 1742 5.188555 ACAAGATGATGAGCAAGGAGAAGTA 59.811 40.000 0.00 0.00 0.00 2.24
1705 1743 4.019501 ACAAGATGATGAGCAAGGAGAAGT 60.020 41.667 0.00 0.00 0.00 3.01
1706 1744 4.515361 ACAAGATGATGAGCAAGGAGAAG 58.485 43.478 0.00 0.00 0.00 2.85
1707 1745 4.564782 ACAAGATGATGAGCAAGGAGAA 57.435 40.909 0.00 0.00 0.00 2.87
1708 1746 4.564782 AACAAGATGATGAGCAAGGAGA 57.435 40.909 0.00 0.00 0.00 3.71
1709 1747 5.640189 AAAACAAGATGATGAGCAAGGAG 57.360 39.130 0.00 0.00 0.00 3.69
1710 1748 5.771666 AGAAAAACAAGATGATGAGCAAGGA 59.228 36.000 0.00 0.00 0.00 3.36
1711 1749 6.022163 AGAAAAACAAGATGATGAGCAAGG 57.978 37.500 0.00 0.00 0.00 3.61
1712 1750 7.368833 AGAAGAAAAACAAGATGATGAGCAAG 58.631 34.615 0.00 0.00 0.00 4.01
1713 1751 7.281040 AGAAGAAAAACAAGATGATGAGCAA 57.719 32.000 0.00 0.00 0.00 3.91
1714 1752 6.889301 AGAAGAAAAACAAGATGATGAGCA 57.111 33.333 0.00 0.00 0.00 4.26
1715 1753 9.683069 TTTTAGAAGAAAAACAAGATGATGAGC 57.317 29.630 0.00 0.00 0.00 4.26
1827 1924 3.814842 TGCCTCTAATATGAATGTTGGCG 59.185 43.478 0.00 0.00 40.55 5.69
1923 2024 6.770746 AGCCTCTAACTGATTAACGTCTAA 57.229 37.500 0.00 0.00 0.00 2.10
1924 2025 6.017275 GCTAGCCTCTAACTGATTAACGTCTA 60.017 42.308 2.29 0.00 0.00 2.59
1925 2026 5.221087 GCTAGCCTCTAACTGATTAACGTCT 60.221 44.000 2.29 0.00 0.00 4.18
1926 2027 4.977347 GCTAGCCTCTAACTGATTAACGTC 59.023 45.833 2.29 0.00 0.00 4.34
1927 2028 4.645588 AGCTAGCCTCTAACTGATTAACGT 59.354 41.667 12.13 0.00 0.00 3.99
1928 2029 4.979197 CAGCTAGCCTCTAACTGATTAACG 59.021 45.833 12.13 0.00 0.00 3.18
1929 2030 5.908341 ACAGCTAGCCTCTAACTGATTAAC 58.092 41.667 12.13 0.00 32.67 2.01
1930 2031 6.546428 AACAGCTAGCCTCTAACTGATTAA 57.454 37.500 12.13 0.00 32.67 1.40
1931 2032 6.381420 AGAAACAGCTAGCCTCTAACTGATTA 59.619 38.462 12.13 0.00 32.67 1.75
1932 2033 5.188751 AGAAACAGCTAGCCTCTAACTGATT 59.811 40.000 12.13 1.98 32.67 2.57
1933 2034 4.714308 AGAAACAGCTAGCCTCTAACTGAT 59.286 41.667 12.13 0.00 32.67 2.90
1934 2035 4.090090 AGAAACAGCTAGCCTCTAACTGA 58.910 43.478 12.13 0.00 32.67 3.41
1935 2036 4.159506 AGAGAAACAGCTAGCCTCTAACTG 59.840 45.833 16.09 7.37 32.95 3.16
1936 2037 4.349365 AGAGAAACAGCTAGCCTCTAACT 58.651 43.478 16.09 7.86 32.95 2.24
1937 2038 4.401202 AGAGAGAAACAGCTAGCCTCTAAC 59.599 45.833 17.21 8.71 34.67 2.34
1938 2039 4.605183 AGAGAGAAACAGCTAGCCTCTAA 58.395 43.478 17.21 0.00 34.67 2.10
1939 2040 4.080015 AGAGAGAGAAACAGCTAGCCTCTA 60.080 45.833 17.21 0.00 34.67 2.43
1940 2041 3.023832 GAGAGAGAAACAGCTAGCCTCT 58.976 50.000 17.21 17.21 36.97 3.69
1941 2042 3.023832 AGAGAGAGAAACAGCTAGCCTC 58.976 50.000 12.13 10.39 0.00 4.70
1942 2043 3.023832 GAGAGAGAGAAACAGCTAGCCT 58.976 50.000 12.13 0.00 0.00 4.58
1943 2044 2.223479 CGAGAGAGAGAAACAGCTAGCC 60.223 54.545 12.13 0.00 0.00 3.93
1944 2045 2.223479 CCGAGAGAGAGAAACAGCTAGC 60.223 54.545 6.62 6.62 0.00 3.42
1945 2046 2.357637 CCCGAGAGAGAGAAACAGCTAG 59.642 54.545 0.00 0.00 0.00 3.42
1946 2047 2.370349 CCCGAGAGAGAGAAACAGCTA 58.630 52.381 0.00 0.00 0.00 3.32
1947 2048 1.181786 CCCGAGAGAGAGAAACAGCT 58.818 55.000 0.00 0.00 0.00 4.24
1948 2049 0.459411 GCCCGAGAGAGAGAAACAGC 60.459 60.000 0.00 0.00 0.00 4.40
1949 2050 1.181786 AGCCCGAGAGAGAGAAACAG 58.818 55.000 0.00 0.00 0.00 3.16
1950 2051 1.273606 CAAGCCCGAGAGAGAGAAACA 59.726 52.381 0.00 0.00 0.00 2.83
1951 2052 1.404851 CCAAGCCCGAGAGAGAGAAAC 60.405 57.143 0.00 0.00 0.00 2.78
1952 2053 0.898320 CCAAGCCCGAGAGAGAGAAA 59.102 55.000 0.00 0.00 0.00 2.52
1953 2054 0.972983 CCCAAGCCCGAGAGAGAGAA 60.973 60.000 0.00 0.00 0.00 2.87
1954 2055 1.380515 CCCAAGCCCGAGAGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
1955 2056 3.087666 GCCCAAGCCCGAGAGAGAG 62.088 68.421 0.00 0.00 0.00 3.20
1956 2057 3.077556 GCCCAAGCCCGAGAGAGA 61.078 66.667 0.00 0.00 0.00 3.10
1957 2058 4.521062 CGCCCAAGCCCGAGAGAG 62.521 72.222 0.00 0.00 34.57 3.20
1959 2060 4.821589 GTCGCCCAAGCCCGAGAG 62.822 72.222 0.00 0.00 33.71 3.20
1969 2070 0.966875 TCGCTAGGTTTAGTCGCCCA 60.967 55.000 0.00 0.00 0.00 5.36
1971 2072 0.527169 GGTCGCTAGGTTTAGTCGCC 60.527 60.000 0.00 0.00 0.00 5.54
1993 2097 1.109920 GTGGCGGATGAGCTCTCCTA 61.110 60.000 22.12 11.11 37.29 2.94
2044 2151 2.280524 CTCACCGCCGACAACCAA 60.281 61.111 0.00 0.00 0.00 3.67
2071 2179 0.384309 GATCCACACGCGTAGATCCA 59.616 55.000 24.64 6.15 35.09 3.41
2174 2282 7.775561 GGGAAAGGATCTGAAGCTTCTTTATTA 59.224 37.037 26.09 4.92 0.00 0.98
2197 2305 3.295273 CGGATCGCCTCGATGGGA 61.295 66.667 9.75 9.75 47.00 4.37
2276 2391 2.284625 TCCACCACGAGGATGCCT 60.285 61.111 5.68 0.00 38.69 4.75
2322 2437 3.751246 GCGCTGGAGCAAATGCCA 61.751 61.111 0.00 0.00 43.38 4.92
2351 2466 0.041386 ACTCCAGGACTACCTCCCAC 59.959 60.000 0.00 0.00 45.94 4.61
2365 2480 1.340308 CCACAATCTGCATCCACTCCA 60.340 52.381 0.00 0.00 0.00 3.86
2423 2539 0.250727 CCATGAACCACGAACCCAGT 60.251 55.000 0.00 0.00 0.00 4.00
2498 2615 1.080093 GGACACGCCATCGAACTCA 60.080 57.895 0.00 0.00 39.41 3.41
2539 2656 1.801771 CGAAGCCATTACCGTTGAACA 59.198 47.619 0.00 0.00 0.00 3.18
2555 2672 1.600636 TGGCTCACCAAAGGCGAAG 60.601 57.895 0.00 0.00 45.37 3.79
2647 2765 2.228822 CACAATAGCCACCAAAGGACAC 59.771 50.000 0.00 0.00 0.00 3.67
2649 2767 1.818674 CCACAATAGCCACCAAAGGAC 59.181 52.381 0.00 0.00 0.00 3.85
2650 2768 1.427368 ACCACAATAGCCACCAAAGGA 59.573 47.619 0.00 0.00 0.00 3.36
2651 2769 1.545582 CACCACAATAGCCACCAAAGG 59.454 52.381 0.00 0.00 0.00 3.11
2652 2770 1.545582 CCACCACAATAGCCACCAAAG 59.454 52.381 0.00 0.00 0.00 2.77
2714 2839 8.600625 GGAAAAATATAATCAAGGCCGAAAAAC 58.399 33.333 0.00 0.00 0.00 2.43
2717 2842 7.654022 AGGAAAAATATAATCAAGGCCGAAA 57.346 32.000 0.00 0.00 0.00 3.46
2731 2856 7.364144 GGAACATCAGCCAAGAAGGAAAAATAT 60.364 37.037 0.00 0.00 41.22 1.28
2783 2909 7.122055 ACACTGACCTGACAAAAGTGAAAAATA 59.878 33.333 8.02 0.00 40.54 1.40
2784 2910 6.071391 ACACTGACCTGACAAAAGTGAAAAAT 60.071 34.615 8.02 0.00 40.54 1.82
2792 2918 4.442706 AGTACACACTGACCTGACAAAAG 58.557 43.478 0.00 0.00 32.25 2.27
2859 3001 6.220930 TGCAGTAAACGTCTAATCAGAGTTT 58.779 36.000 0.00 0.00 36.71 2.66
2860 3002 5.779922 TGCAGTAAACGTCTAATCAGAGTT 58.220 37.500 0.00 0.00 0.00 3.01
2861 3003 5.386958 TGCAGTAAACGTCTAATCAGAGT 57.613 39.130 0.00 0.00 0.00 3.24
2863 3005 4.219944 ACCTGCAGTAAACGTCTAATCAGA 59.780 41.667 13.81 0.00 0.00 3.27
2864 3006 4.327357 CACCTGCAGTAAACGTCTAATCAG 59.673 45.833 13.81 0.00 0.00 2.90
2865 3007 4.021807 TCACCTGCAGTAAACGTCTAATCA 60.022 41.667 13.81 0.00 0.00 2.57
2866 3008 4.491676 TCACCTGCAGTAAACGTCTAATC 58.508 43.478 13.81 0.00 0.00 1.75
2867 3009 4.495422 CTCACCTGCAGTAAACGTCTAAT 58.505 43.478 13.81 0.00 0.00 1.73
3029 3199 7.337938 TGAAGCATCTGGATGTGTATCTTTTA 58.662 34.615 11.52 0.00 40.80 1.52
3604 4005 8.222637 GGTTGGACTAATTTGGGGTAATATACT 58.777 37.037 0.00 0.00 0.00 2.12
3605 4006 7.449395 GGGTTGGACTAATTTGGGGTAATATAC 59.551 40.741 0.00 0.00 0.00 1.47
3637 4038 5.991606 TGAGTTAGATCCAGTTGTTTCACAG 59.008 40.000 0.00 0.00 0.00 3.66
3661 4072 8.189119 TCTGTACATTTAAATTTTCCAAGCCT 57.811 30.769 0.00 0.00 0.00 4.58
3962 4383 5.258456 TGGACTACATACGGACTGAAATC 57.742 43.478 0.00 0.00 0.00 2.17
4147 7262 1.208052 GATGCTACCAGGCAGAGTCAA 59.792 52.381 0.00 0.00 45.75 3.18
4205 7320 4.686191 AATCCCAAGCAACAACATTCAA 57.314 36.364 0.00 0.00 0.00 2.69
4556 8559 4.499037 AACAAACGGTTAAGAGATTGCC 57.501 40.909 0.00 0.00 38.15 4.52
4867 8870 2.802414 CGAACGAACCGACCGACC 60.802 66.667 0.00 0.00 0.00 4.79
4999 9002 4.442375 AACATTCTCGACACTACAGAGG 57.558 45.455 0.00 0.00 33.16 3.69
5001 9004 5.340803 GCATAACATTCTCGACACTACAGA 58.659 41.667 0.00 0.00 0.00 3.41
5043 9046 2.401351 AGACGCGAACTGAAAACTACC 58.599 47.619 15.93 0.00 0.00 3.18
5095 9100 0.037605 AACAGGACGCCCTAAGTTCG 60.038 55.000 0.00 0.00 42.02 3.95
5195 9207 2.489339 CACGGCAAATAACAGGGCTGT 61.489 52.381 0.00 0.00 46.12 4.40
5228 9240 1.703411 AACCCACCACAACAATGGAG 58.297 50.000 0.00 0.00 43.02 3.86
5276 9288 2.825836 GCCATTCGCTCCCACCAG 60.826 66.667 0.00 0.00 0.00 4.00
5297 9309 0.948623 CCCATGCTCGACAACACGAA 60.949 55.000 0.00 0.00 41.67 3.85
5370 10827 4.667519 TCGGCTCTCCTATTTTTACTCC 57.332 45.455 0.00 0.00 0.00 3.85
5516 11167 3.672767 TCAGTCCGTAAGAAACTTCCC 57.327 47.619 0.00 0.00 43.02 3.97
5519 11170 6.925165 TCGTAAATTCAGTCCGTAAGAAACTT 59.075 34.615 0.00 0.00 43.02 2.66
5523 11174 6.258230 TCTCGTAAATTCAGTCCGTAAGAA 57.742 37.500 0.00 0.00 43.02 2.52
5524 11175 5.885230 TCTCGTAAATTCAGTCCGTAAGA 57.115 39.130 0.00 0.00 43.02 2.10
5525 11176 6.263344 TGATCTCGTAAATTCAGTCCGTAAG 58.737 40.000 0.00 0.00 0.00 2.34
5526 11177 6.127814 ACTGATCTCGTAAATTCAGTCCGTAA 60.128 38.462 0.00 0.00 44.00 3.18
5527 11178 5.356190 ACTGATCTCGTAAATTCAGTCCGTA 59.644 40.000 0.00 0.00 44.00 4.02
5528 11179 4.158025 ACTGATCTCGTAAATTCAGTCCGT 59.842 41.667 0.00 0.00 44.00 4.69
5529 11180 4.673441 ACTGATCTCGTAAATTCAGTCCG 58.327 43.478 0.00 0.00 44.00 4.79
5530 11181 5.292101 CCAACTGATCTCGTAAATTCAGTCC 59.708 44.000 5.02 0.00 45.98 3.85
5531 11182 5.869888 ACCAACTGATCTCGTAAATTCAGTC 59.130 40.000 5.02 0.00 45.98 3.51
5533 11184 6.402550 CCAACCAACTGATCTCGTAAATTCAG 60.403 42.308 0.00 0.00 41.06 3.02
5534 11185 5.411361 CCAACCAACTGATCTCGTAAATTCA 59.589 40.000 0.00 0.00 0.00 2.57
5535 11186 5.673818 GCCAACCAACTGATCTCGTAAATTC 60.674 44.000 0.00 0.00 0.00 2.17
5536 11187 4.156008 GCCAACCAACTGATCTCGTAAATT 59.844 41.667 0.00 0.00 0.00 1.82
5537 11188 3.689649 GCCAACCAACTGATCTCGTAAAT 59.310 43.478 0.00 0.00 0.00 1.40
5538 11189 3.071479 GCCAACCAACTGATCTCGTAAA 58.929 45.455 0.00 0.00 0.00 2.01
5539 11190 2.301870 AGCCAACCAACTGATCTCGTAA 59.698 45.455 0.00 0.00 0.00 3.18
5540 11191 1.899814 AGCCAACCAACTGATCTCGTA 59.100 47.619 0.00 0.00 0.00 3.43
5541 11192 0.687354 AGCCAACCAACTGATCTCGT 59.313 50.000 0.00 0.00 0.00 4.18
5542 11193 1.081892 CAGCCAACCAACTGATCTCG 58.918 55.000 0.00 0.00 35.90 4.04
5543 11194 1.457346 CCAGCCAACCAACTGATCTC 58.543 55.000 0.00 0.00 35.90 2.75
5544 11195 0.610232 GCCAGCCAACCAACTGATCT 60.610 55.000 0.00 0.00 35.90 2.75
5545 11196 0.610232 AGCCAGCCAACCAACTGATC 60.610 55.000 0.00 0.00 35.90 2.92
5546 11197 0.610232 GAGCCAGCCAACCAACTGAT 60.610 55.000 0.00 0.00 35.90 2.90
5547 11198 1.228245 GAGCCAGCCAACCAACTGA 60.228 57.895 0.00 0.00 35.90 3.41
5548 11199 0.896940 ATGAGCCAGCCAACCAACTG 60.897 55.000 0.00 0.00 0.00 3.16
5549 11200 0.698238 TATGAGCCAGCCAACCAACT 59.302 50.000 0.00 0.00 0.00 3.16
5550 11201 1.098050 CTATGAGCCAGCCAACCAAC 58.902 55.000 0.00 0.00 0.00 3.77
5551 11202 0.698238 ACTATGAGCCAGCCAACCAA 59.302 50.000 0.00 0.00 0.00 3.67
5552 11203 0.035152 CACTATGAGCCAGCCAACCA 60.035 55.000 0.00 0.00 0.00 3.67
5553 11204 0.253044 TCACTATGAGCCAGCCAACC 59.747 55.000 0.00 0.00 0.00 3.77
5554 11205 2.113860 TTCACTATGAGCCAGCCAAC 57.886 50.000 0.00 0.00 0.00 3.77
5555 11206 2.877097 TTTCACTATGAGCCAGCCAA 57.123 45.000 0.00 0.00 0.00 4.52
5556 11207 2.877097 TTTTCACTATGAGCCAGCCA 57.123 45.000 0.00 0.00 0.00 4.75
5557 11208 3.065925 GTGATTTTCACTATGAGCCAGCC 59.934 47.826 0.45 0.00 43.73 4.85
5558 11209 4.284378 GTGATTTTCACTATGAGCCAGC 57.716 45.455 0.45 0.00 43.73 4.85
5569 11220 4.978580 GCCTTGTTCTCAAGTGATTTTCAC 59.021 41.667 7.11 0.00 46.70 3.18
5570 11221 4.261155 CGCCTTGTTCTCAAGTGATTTTCA 60.261 41.667 7.11 0.00 46.70 2.69
5571 11222 4.222114 CGCCTTGTTCTCAAGTGATTTTC 58.778 43.478 7.11 0.00 46.70 2.29
5572 11223 3.632145 ACGCCTTGTTCTCAAGTGATTTT 59.368 39.130 7.11 0.00 46.70 1.82
5573 11224 3.003689 CACGCCTTGTTCTCAAGTGATTT 59.996 43.478 7.11 0.00 46.70 2.17
5574 11225 2.549754 CACGCCTTGTTCTCAAGTGATT 59.450 45.455 7.11 0.00 46.70 2.57
5575 11226 2.146342 CACGCCTTGTTCTCAAGTGAT 58.854 47.619 7.11 0.00 46.70 3.06
5576 11227 1.581934 CACGCCTTGTTCTCAAGTGA 58.418 50.000 7.11 0.00 46.70 3.41
5577 11228 0.040958 GCACGCCTTGTTCTCAAGTG 60.041 55.000 7.11 2.13 46.70 3.16
5578 11229 1.166531 GGCACGCCTTGTTCTCAAGT 61.167 55.000 0.00 0.00 46.70 3.16
5580 11231 1.896660 GGGCACGCCTTGTTCTCAA 60.897 57.895 8.20 0.00 36.10 3.02
5581 11232 2.281484 GGGCACGCCTTGTTCTCA 60.281 61.111 8.20 0.00 36.10 3.27
5582 11233 3.056328 GGGGCACGCCTTGTTCTC 61.056 66.667 8.20 0.00 36.10 2.87
5583 11234 3.570212 AGGGGCACGCCTTGTTCT 61.570 61.111 8.20 0.00 44.92 3.01
5584 11235 3.365265 CAGGGGCACGCCTTGTTC 61.365 66.667 8.20 0.00 44.92 3.18
5585 11236 3.731766 AACAGGGGCACGCCTTGTT 62.732 57.895 19.08 19.08 44.92 2.83
5586 11237 4.204028 AACAGGGGCACGCCTTGT 62.204 61.111 8.20 10.09 44.92 3.16
5587 11238 3.673484 CAACAGGGGCACGCCTTG 61.673 66.667 8.20 9.47 44.92 3.61
5588 11239 4.974721 CCAACAGGGGCACGCCTT 62.975 66.667 8.20 0.00 44.92 4.35
5616 11267 4.569180 AACACGTGCAGGCTGGCT 62.569 61.111 17.22 0.00 34.04 4.75
5617 11268 4.030452 GAACACGTGCAGGCTGGC 62.030 66.667 17.22 9.25 0.00 4.85
5618 11269 3.716006 CGAACACGTGCAGGCTGG 61.716 66.667 17.22 1.78 0.00 4.85
5619 11270 2.661537 TCGAACACGTGCAGGCTG 60.662 61.111 17.22 10.94 0.00 4.85
5620 11271 2.356313 CTCGAACACGTGCAGGCT 60.356 61.111 17.22 0.00 0.00 4.58
5621 11272 4.077188 GCTCGAACACGTGCAGGC 62.077 66.667 17.22 9.49 43.07 4.85
5622 11273 3.414700 GGCTCGAACACGTGCAGG 61.415 66.667 17.22 4.53 44.57 4.85
5623 11274 1.956170 AAGGCTCGAACACGTGCAG 60.956 57.895 17.22 7.34 44.57 4.41
5624 11275 2.108157 AAGGCTCGAACACGTGCA 59.892 55.556 17.22 0.00 44.57 4.57
5625 11276 2.551270 CAAGGCTCGAACACGTGC 59.449 61.111 17.22 0.00 42.91 5.34
5626 11277 1.157870 AACCAAGGCTCGAACACGTG 61.158 55.000 15.48 15.48 0.00 4.49
5627 11278 1.145377 AACCAAGGCTCGAACACGT 59.855 52.632 0.00 0.00 0.00 4.49
5628 11279 1.569493 CAACCAAGGCTCGAACACG 59.431 57.895 0.00 0.00 0.00 4.49
5629 11280 1.949257 CCAACCAAGGCTCGAACAC 59.051 57.895 0.00 0.00 0.00 3.32
5630 11281 4.473643 CCAACCAAGGCTCGAACA 57.526 55.556 0.00 0.00 0.00 3.18
5690 11341 1.575447 CCTTCCAAGGCTAGCCCCTT 61.575 60.000 30.42 16.33 45.94 3.95
5692 11343 2.597903 CCTTCCAAGGCTAGCCCC 59.402 66.667 30.42 6.50 39.76 5.80
5748 11399 9.362539 GTTGTATTAGGAGTCGATTTTAGAACA 57.637 33.333 0.00 0.00 0.00 3.18
5759 11410 4.103357 CAAGGACGTTGTATTAGGAGTCG 58.897 47.826 0.00 0.00 0.00 4.18
5775 11426 2.067013 GGAGCGTGACTTAACAAGGAC 58.933 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.