Multiple sequence alignment - TraesCS7D01G259500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G259500 chr7D 100.000 3281 0 0 1 3281 235161890 235158610 0.000000e+00 6059
1 TraesCS7D01G259500 chr7D 96.135 2406 80 10 881 3281 237847035 237849432 0.000000e+00 3916
2 TraesCS7D01G259500 chr7D 86.967 422 24 11 353 769 285244384 285244779 2.320000e-121 446
3 TraesCS7D01G259500 chr3D 96.798 2936 60 6 355 3281 54732073 54729163 0.000000e+00 4870
4 TraesCS7D01G259500 chr3D 97.189 249 5 1 354 602 231154362 231154116 1.410000e-113 420
5 TraesCS7D01G259500 chr3D 85.088 114 10 4 575 687 54731749 54731642 3.460000e-20 110
6 TraesCS7D01G259500 chr3D 90.476 84 6 2 730 813 54731815 54731734 3.460000e-20 110
7 TraesCS7D01G259500 chr3D 98.333 60 1 0 614 673 231154126 231154067 4.480000e-19 106
8 TraesCS7D01G259500 chr2D 96.151 2598 59 25 697 3281 405625631 405623062 0.000000e+00 4205
9 TraesCS7D01G259500 chr2D 86.311 694 23 20 354 1047 449932357 449931736 0.000000e+00 689
10 TraesCS7D01G259500 chr2D 92.027 301 9 8 354 651 405625899 405625611 3.050000e-110 409
11 TraesCS7D01G259500 chr2D 96.476 227 5 2 353 578 120544466 120544242 4.000000e-99 372
12 TraesCS7D01G259500 chr2D 93.902 82 4 1 851 931 284552511 284552592 4.450000e-24 122
13 TraesCS7D01G259500 chr6D 97.148 2384 52 12 907 3281 459053507 459055883 0.000000e+00 4012
14 TraesCS7D01G259500 chr6D 96.383 2433 64 13 851 3281 266791664 266789254 0.000000e+00 3984
15 TraesCS7D01G259500 chr6D 87.294 425 22 16 352 769 273185056 273184657 1.070000e-124 457
16 TraesCS7D01G259500 chr6D 90.698 301 12 13 354 651 86936997 86937284 1.430000e-103 387
17 TraesCS7D01G259500 chr6D 90.106 283 25 3 73 353 432902559 432902278 6.690000e-97 364
18 TraesCS7D01G259500 chr6D 82.298 322 27 19 698 997 86937264 86937577 5.430000e-63 252
19 TraesCS7D01G259500 chr5D 97.635 2326 52 3 958 3281 77002163 77004487 0.000000e+00 3988
20 TraesCS7D01G259500 chr5D 97.332 2324 56 2 958 3281 61461561 61463878 0.000000e+00 3943
21 TraesCS7D01G259500 chr4D 97.050 2373 61 7 912 3281 503116461 503114095 0.000000e+00 3986
22 TraesCS7D01G259500 chr4D 97.461 2324 53 2 958 3281 365416535 365418852 0.000000e+00 3960
23 TraesCS7D01G259500 chr4D 89.677 310 15 15 353 660 111599300 111599594 2.390000e-101 379
24 TraesCS7D01G259500 chr1D 96.720 2378 67 8 907 3281 461931006 461933375 0.000000e+00 3949
25 TraesCS7D01G259500 chr7B 96.910 356 7 3 1 353 211114071 211113717 7.840000e-166 593
26 TraesCS7D01G259500 chr7A 93.838 357 16 3 1 353 250033311 250032957 1.730000e-147 532
27 TraesCS7D01G259500 chr6B 89.753 283 26 3 73 353 653102715 653102434 3.110000e-95 359
28 TraesCS7D01G259500 chr6A 88.652 282 29 3 73 353 579018274 579017995 1.130000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G259500 chr7D 235158610 235161890 3280 True 6059.000000 6059 100.000000 1 3281 1 chr7D.!!$R1 3280
1 TraesCS7D01G259500 chr7D 237847035 237849432 2397 False 3916.000000 3916 96.135000 881 3281 1 chr7D.!!$F1 2400
2 TraesCS7D01G259500 chr3D 54729163 54732073 2910 True 1696.666667 4870 90.787333 355 3281 3 chr3D.!!$R1 2926
3 TraesCS7D01G259500 chr2D 405623062 405625899 2837 True 2307.000000 4205 94.089000 354 3281 2 chr2D.!!$R3 2927
4 TraesCS7D01G259500 chr2D 449931736 449932357 621 True 689.000000 689 86.311000 354 1047 1 chr2D.!!$R2 693
5 TraesCS7D01G259500 chr6D 459053507 459055883 2376 False 4012.000000 4012 97.148000 907 3281 1 chr6D.!!$F1 2374
6 TraesCS7D01G259500 chr6D 266789254 266791664 2410 True 3984.000000 3984 96.383000 851 3281 1 chr6D.!!$R1 2430
7 TraesCS7D01G259500 chr6D 86936997 86937577 580 False 319.500000 387 86.498000 354 997 2 chr6D.!!$F2 643
8 TraesCS7D01G259500 chr5D 77002163 77004487 2324 False 3988.000000 3988 97.635000 958 3281 1 chr5D.!!$F2 2323
9 TraesCS7D01G259500 chr5D 61461561 61463878 2317 False 3943.000000 3943 97.332000 958 3281 1 chr5D.!!$F1 2323
10 TraesCS7D01G259500 chr4D 503114095 503116461 2366 True 3986.000000 3986 97.050000 912 3281 1 chr4D.!!$R1 2369
11 TraesCS7D01G259500 chr4D 365416535 365418852 2317 False 3960.000000 3960 97.461000 958 3281 1 chr4D.!!$F2 2323
12 TraesCS7D01G259500 chr1D 461931006 461933375 2369 False 3949.000000 3949 96.720000 907 3281 1 chr1D.!!$F1 2374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.250513 CGGCTAGGAGGCTGTTCTTT 59.749 55.0 0.00 0.0 38.85 2.52 F
1363 1423 0.674269 TGATGATGCTCGTGCTGCAA 60.674 50.0 2.77 0.0 44.01 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1704 0.098376 GGAACTCGTAGACGCGATGT 59.902 55.000 15.93 0.0 40.29 3.06 R
2498 2564 1.982958 GTCCAACTCCCAAAGACCCTA 59.017 52.381 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.884465 GATTAATACTGATGTATTGCAAAGACC 57.116 33.333 1.71 0.00 45.71 3.85
30 31 9.632638 ATTAATACTGATGTATTGCAAAGACCT 57.367 29.630 1.71 0.00 45.71 3.85
31 32 6.932356 ATACTGATGTATTGCAAAGACCTG 57.068 37.500 1.71 0.65 37.20 4.00
32 33 4.655963 ACTGATGTATTGCAAAGACCTGT 58.344 39.130 1.71 1.23 37.20 4.00
33 34 5.072741 ACTGATGTATTGCAAAGACCTGTT 58.927 37.500 1.71 0.00 37.20 3.16
34 35 5.048504 ACTGATGTATTGCAAAGACCTGTTG 60.049 40.000 1.71 0.00 37.20 3.33
35 36 4.826733 TGATGTATTGCAAAGACCTGTTGT 59.173 37.500 1.71 0.00 37.20 3.32
36 37 5.301551 TGATGTATTGCAAAGACCTGTTGTT 59.698 36.000 1.71 0.00 37.20 2.83
37 38 4.930963 TGTATTGCAAAGACCTGTTGTTG 58.069 39.130 1.71 0.00 37.20 3.33
38 39 4.400884 TGTATTGCAAAGACCTGTTGTTGT 59.599 37.500 1.71 0.00 37.20 3.32
39 40 3.951775 TTGCAAAGACCTGTTGTTGTT 57.048 38.095 0.00 0.00 0.00 2.83
40 41 3.951775 TGCAAAGACCTGTTGTTGTTT 57.048 38.095 0.00 0.00 0.00 2.83
41 42 4.264460 TGCAAAGACCTGTTGTTGTTTT 57.736 36.364 0.00 0.00 0.00 2.43
42 43 5.392767 TGCAAAGACCTGTTGTTGTTTTA 57.607 34.783 0.00 0.00 0.00 1.52
43 44 5.971763 TGCAAAGACCTGTTGTTGTTTTAT 58.028 33.333 0.00 0.00 0.00 1.40
44 45 6.402222 TGCAAAGACCTGTTGTTGTTTTATT 58.598 32.000 0.00 0.00 0.00 1.40
45 46 6.876257 TGCAAAGACCTGTTGTTGTTTTATTT 59.124 30.769 0.00 0.00 0.00 1.40
46 47 7.064016 TGCAAAGACCTGTTGTTGTTTTATTTC 59.936 33.333 0.00 0.00 0.00 2.17
47 48 7.277760 GCAAAGACCTGTTGTTGTTTTATTTCT 59.722 33.333 0.00 0.00 0.00 2.52
48 49 9.150348 CAAAGACCTGTTGTTGTTTTATTTCTT 57.850 29.630 0.00 0.00 0.00 2.52
49 50 8.926715 AAGACCTGTTGTTGTTTTATTTCTTC 57.073 30.769 0.00 0.00 0.00 2.87
50 51 8.062065 AGACCTGTTGTTGTTTTATTTCTTCA 57.938 30.769 0.00 0.00 0.00 3.02
51 52 8.695456 AGACCTGTTGTTGTTTTATTTCTTCAT 58.305 29.630 0.00 0.00 0.00 2.57
52 53 8.647143 ACCTGTTGTTGTTTTATTTCTTCATG 57.353 30.769 0.00 0.00 0.00 3.07
53 54 7.224557 ACCTGTTGTTGTTTTATTTCTTCATGC 59.775 33.333 0.00 0.00 0.00 4.06
54 55 7.307337 CCTGTTGTTGTTTTATTTCTTCATGCC 60.307 37.037 0.00 0.00 0.00 4.40
55 56 6.481644 TGTTGTTGTTTTATTTCTTCATGCCC 59.518 34.615 0.00 0.00 0.00 5.36
56 57 5.546526 TGTTGTTTTATTTCTTCATGCCCC 58.453 37.500 0.00 0.00 0.00 5.80
57 58 5.306678 TGTTGTTTTATTTCTTCATGCCCCT 59.693 36.000 0.00 0.00 0.00 4.79
58 59 6.183361 TGTTGTTTTATTTCTTCATGCCCCTT 60.183 34.615 0.00 0.00 0.00 3.95
59 60 6.432403 TGTTTTATTTCTTCATGCCCCTTT 57.568 33.333 0.00 0.00 0.00 3.11
60 61 7.546250 TGTTTTATTTCTTCATGCCCCTTTA 57.454 32.000 0.00 0.00 0.00 1.85
61 62 8.144862 TGTTTTATTTCTTCATGCCCCTTTAT 57.855 30.769 0.00 0.00 0.00 1.40
62 63 8.040132 TGTTTTATTTCTTCATGCCCCTTTATG 58.960 33.333 0.00 0.00 0.00 1.90
63 64 7.969690 TTTATTTCTTCATGCCCCTTTATGA 57.030 32.000 0.00 0.00 0.00 2.15
64 65 5.859205 ATTTCTTCATGCCCCTTTATGAC 57.141 39.130 0.00 0.00 33.36 3.06
65 66 4.314522 TTCTTCATGCCCCTTTATGACA 57.685 40.909 0.00 0.00 33.36 3.58
66 67 4.314522 TCTTCATGCCCCTTTATGACAA 57.685 40.909 0.00 0.00 33.36 3.18
67 68 4.671831 TCTTCATGCCCCTTTATGACAAA 58.328 39.130 0.00 0.00 33.36 2.83
68 69 4.706476 TCTTCATGCCCCTTTATGACAAAG 59.294 41.667 0.00 0.00 33.36 2.77
69 70 4.314522 TCATGCCCCTTTATGACAAAGA 57.685 40.909 0.00 0.00 0.00 2.52
70 71 4.016444 TCATGCCCCTTTATGACAAAGAC 58.984 43.478 0.00 0.00 0.00 3.01
71 72 3.806949 TGCCCCTTTATGACAAAGACT 57.193 42.857 0.00 0.00 0.00 3.24
72 73 4.112634 TGCCCCTTTATGACAAAGACTT 57.887 40.909 0.00 0.00 0.00 3.01
73 74 4.479158 TGCCCCTTTATGACAAAGACTTT 58.521 39.130 0.00 0.00 0.00 2.66
74 75 4.522789 TGCCCCTTTATGACAAAGACTTTC 59.477 41.667 0.00 0.00 0.00 2.62
75 76 4.522789 GCCCCTTTATGACAAAGACTTTCA 59.477 41.667 0.00 0.00 0.00 2.69
76 77 5.335976 GCCCCTTTATGACAAAGACTTTCAG 60.336 44.000 0.00 0.00 0.00 3.02
77 78 6.003950 CCCCTTTATGACAAAGACTTTCAGA 58.996 40.000 0.00 0.00 0.00 3.27
78 79 6.660949 CCCCTTTATGACAAAGACTTTCAGAT 59.339 38.462 0.00 0.00 0.00 2.90
79 80 7.177392 CCCCTTTATGACAAAGACTTTCAGATT 59.823 37.037 0.00 0.00 0.00 2.40
80 81 8.025445 CCCTTTATGACAAAGACTTTCAGATTG 58.975 37.037 0.00 0.00 0.00 2.67
81 82 8.786898 CCTTTATGACAAAGACTTTCAGATTGA 58.213 33.333 0.00 0.00 0.00 2.57
82 83 9.604626 CTTTATGACAAAGACTTTCAGATTGAC 57.395 33.333 0.00 0.00 0.00 3.18
83 84 8.908786 TTATGACAAAGACTTTCAGATTGACT 57.091 30.769 0.00 0.00 0.00 3.41
84 85 6.609237 TGACAAAGACTTTCAGATTGACTG 57.391 37.500 0.00 0.00 46.97 3.51
85 86 5.008019 TGACAAAGACTTTCAGATTGACTGC 59.992 40.000 0.00 0.00 45.38 4.40
86 87 5.128919 ACAAAGACTTTCAGATTGACTGCT 58.871 37.500 0.00 0.00 45.38 4.24
87 88 5.591877 ACAAAGACTTTCAGATTGACTGCTT 59.408 36.000 0.00 0.00 45.38 3.91
88 89 6.096001 ACAAAGACTTTCAGATTGACTGCTTT 59.904 34.615 0.00 0.00 45.38 3.51
89 90 6.705863 AAGACTTTCAGATTGACTGCTTTT 57.294 33.333 0.00 0.00 45.38 2.27
90 91 6.069684 AGACTTTCAGATTGACTGCTTTTG 57.930 37.500 0.00 0.00 45.38 2.44
91 92 5.009410 AGACTTTCAGATTGACTGCTTTTGG 59.991 40.000 0.00 0.00 45.38 3.28
92 93 4.038402 ACTTTCAGATTGACTGCTTTTGGG 59.962 41.667 0.00 0.00 45.38 4.12
93 94 2.517959 TCAGATTGACTGCTTTTGGGG 58.482 47.619 0.00 0.00 45.38 4.96
94 95 1.067354 CAGATTGACTGCTTTTGGGGC 60.067 52.381 0.00 0.00 39.86 5.80
95 96 1.203100 AGATTGACTGCTTTTGGGGCT 60.203 47.619 0.00 0.00 0.00 5.19
96 97 2.041620 AGATTGACTGCTTTTGGGGCTA 59.958 45.455 0.00 0.00 0.00 3.93
97 98 1.909700 TTGACTGCTTTTGGGGCTAG 58.090 50.000 0.00 0.00 0.00 3.42
98 99 0.771127 TGACTGCTTTTGGGGCTAGT 59.229 50.000 0.00 0.00 0.00 2.57
99 100 1.982226 TGACTGCTTTTGGGGCTAGTA 59.018 47.619 0.00 0.00 0.00 1.82
100 101 2.576191 TGACTGCTTTTGGGGCTAGTAT 59.424 45.455 0.00 0.00 0.00 2.12
101 102 3.010138 TGACTGCTTTTGGGGCTAGTATT 59.990 43.478 0.00 0.00 0.00 1.89
102 103 4.017126 GACTGCTTTTGGGGCTAGTATTT 58.983 43.478 0.00 0.00 0.00 1.40
103 104 4.416516 ACTGCTTTTGGGGCTAGTATTTT 58.583 39.130 0.00 0.00 0.00 1.82
104 105 4.838423 ACTGCTTTTGGGGCTAGTATTTTT 59.162 37.500 0.00 0.00 0.00 1.94
105 106 6.014012 ACTGCTTTTGGGGCTAGTATTTTTA 58.986 36.000 0.00 0.00 0.00 1.52
106 107 6.667848 ACTGCTTTTGGGGCTAGTATTTTTAT 59.332 34.615 0.00 0.00 0.00 1.40
107 108 7.180229 ACTGCTTTTGGGGCTAGTATTTTTATT 59.820 33.333 0.00 0.00 0.00 1.40
108 109 8.596781 TGCTTTTGGGGCTAGTATTTTTATTA 57.403 30.769 0.00 0.00 0.00 0.98
109 110 9.036980 TGCTTTTGGGGCTAGTATTTTTATTAA 57.963 29.630 0.00 0.00 0.00 1.40
110 111 9.309516 GCTTTTGGGGCTAGTATTTTTATTAAC 57.690 33.333 0.00 0.00 0.00 2.01
130 131 8.974060 ATTAACAAAACACTTCTTAGACTGGA 57.026 30.769 0.00 0.00 0.00 3.86
131 132 6.679327 AACAAAACACTTCTTAGACTGGAC 57.321 37.500 0.00 0.00 0.00 4.02
132 133 5.990668 ACAAAACACTTCTTAGACTGGACT 58.009 37.500 0.00 0.00 0.00 3.85
133 134 7.120923 ACAAAACACTTCTTAGACTGGACTA 57.879 36.000 0.00 0.00 0.00 2.59
134 135 6.985059 ACAAAACACTTCTTAGACTGGACTAC 59.015 38.462 0.00 0.00 0.00 2.73
135 136 6.980416 AAACACTTCTTAGACTGGACTACT 57.020 37.500 0.00 0.00 0.00 2.57
136 137 6.980416 AACACTTCTTAGACTGGACTACTT 57.020 37.500 0.00 0.00 0.00 2.24
137 138 8.474710 AAACACTTCTTAGACTGGACTACTTA 57.525 34.615 0.00 0.00 0.00 2.24
138 139 8.653036 AACACTTCTTAGACTGGACTACTTAT 57.347 34.615 0.00 0.00 0.00 1.73
139 140 8.283699 ACACTTCTTAGACTGGACTACTTATC 57.716 38.462 0.00 0.00 0.00 1.75
140 141 7.889073 ACACTTCTTAGACTGGACTACTTATCA 59.111 37.037 0.00 0.00 0.00 2.15
141 142 8.740906 CACTTCTTAGACTGGACTACTTATCAA 58.259 37.037 0.00 0.00 0.00 2.57
142 143 9.482175 ACTTCTTAGACTGGACTACTTATCAAT 57.518 33.333 0.00 0.00 0.00 2.57
143 144 9.743057 CTTCTTAGACTGGACTACTTATCAATG 57.257 37.037 0.00 0.00 0.00 2.82
144 145 8.824756 TCTTAGACTGGACTACTTATCAATGT 57.175 34.615 0.00 0.00 0.00 2.71
145 146 9.916360 TCTTAGACTGGACTACTTATCAATGTA 57.084 33.333 0.00 0.00 0.00 2.29
148 149 8.012957 AGACTGGACTACTTATCAATGTAAGG 57.987 38.462 7.25 0.00 36.27 2.69
149 150 6.583562 ACTGGACTACTTATCAATGTAAGGC 58.416 40.000 7.25 0.00 36.27 4.35
150 151 5.925509 TGGACTACTTATCAATGTAAGGCC 58.074 41.667 0.00 0.00 36.27 5.19
151 152 4.989168 GGACTACTTATCAATGTAAGGCCG 59.011 45.833 0.00 0.00 36.27 6.13
152 153 4.377897 ACTACTTATCAATGTAAGGCCGC 58.622 43.478 0.00 0.00 36.27 6.53
153 154 3.560636 ACTTATCAATGTAAGGCCGCT 57.439 42.857 0.00 0.00 36.27 5.52
154 155 4.682778 ACTTATCAATGTAAGGCCGCTA 57.317 40.909 0.00 0.00 36.27 4.26
155 156 4.632153 ACTTATCAATGTAAGGCCGCTAG 58.368 43.478 0.00 0.00 36.27 3.42
156 157 2.550830 ATCAATGTAAGGCCGCTAGG 57.449 50.000 0.00 0.00 41.62 3.02
157 158 1.200519 TCAATGTAAGGCCGCTAGGT 58.799 50.000 0.00 0.00 40.50 3.08
158 159 1.557832 TCAATGTAAGGCCGCTAGGTT 59.442 47.619 0.00 0.00 40.50 3.50
159 160 2.026636 TCAATGTAAGGCCGCTAGGTTT 60.027 45.455 0.00 0.00 40.50 3.27
160 161 2.038387 ATGTAAGGCCGCTAGGTTTG 57.962 50.000 0.00 0.00 40.50 2.93
161 162 0.978151 TGTAAGGCCGCTAGGTTTGA 59.022 50.000 0.00 0.00 40.50 2.69
162 163 1.338389 TGTAAGGCCGCTAGGTTTGAC 60.338 52.381 0.00 0.00 40.50 3.18
163 164 1.066358 GTAAGGCCGCTAGGTTTGACT 60.066 52.381 0.00 0.00 40.50 3.41
164 165 0.400594 AAGGCCGCTAGGTTTGACTT 59.599 50.000 0.00 0.00 40.50 3.01
165 166 0.400594 AGGCCGCTAGGTTTGACTTT 59.599 50.000 0.00 0.00 40.50 2.66
166 167 1.626825 AGGCCGCTAGGTTTGACTTTA 59.373 47.619 0.00 0.00 40.50 1.85
167 168 2.007608 GGCCGCTAGGTTTGACTTTAG 58.992 52.381 0.00 0.00 40.50 1.85
168 169 2.354403 GGCCGCTAGGTTTGACTTTAGA 60.354 50.000 0.00 0.00 40.50 2.10
169 170 3.332034 GCCGCTAGGTTTGACTTTAGAA 58.668 45.455 0.00 0.00 40.50 2.10
170 171 3.749609 GCCGCTAGGTTTGACTTTAGAAA 59.250 43.478 0.00 0.00 40.50 2.52
171 172 4.378149 GCCGCTAGGTTTGACTTTAGAAAC 60.378 45.833 0.00 0.00 40.50 2.78
172 173 4.995487 CCGCTAGGTTTGACTTTAGAAACT 59.005 41.667 0.00 0.00 33.41 2.66
173 174 5.469084 CCGCTAGGTTTGACTTTAGAAACTT 59.531 40.000 0.00 0.00 33.41 2.66
174 175 6.017357 CCGCTAGGTTTGACTTTAGAAACTTT 60.017 38.462 0.00 0.00 33.41 2.66
175 176 7.415229 CGCTAGGTTTGACTTTAGAAACTTTT 58.585 34.615 0.00 0.00 33.41 2.27
176 177 7.913821 CGCTAGGTTTGACTTTAGAAACTTTTT 59.086 33.333 0.00 0.00 33.41 1.94
183 184 8.791355 TTGACTTTAGAAACTTTTTATTCGGC 57.209 30.769 0.00 0.00 0.00 5.54
184 185 8.161699 TGACTTTAGAAACTTTTTATTCGGCT 57.838 30.769 0.00 0.00 0.00 5.52
185 186 9.275398 TGACTTTAGAAACTTTTTATTCGGCTA 57.725 29.630 0.00 0.00 0.00 3.93
186 187 9.756461 GACTTTAGAAACTTTTTATTCGGCTAG 57.244 33.333 0.00 0.00 0.00 3.42
187 188 8.727910 ACTTTAGAAACTTTTTATTCGGCTAGG 58.272 33.333 0.00 0.00 0.00 3.02
188 189 8.851541 TTTAGAAACTTTTTATTCGGCTAGGA 57.148 30.769 0.00 0.00 0.00 2.94
189 190 6.986904 AGAAACTTTTTATTCGGCTAGGAG 57.013 37.500 0.00 0.00 0.00 3.69
190 191 5.880887 AGAAACTTTTTATTCGGCTAGGAGG 59.119 40.000 0.00 0.00 0.00 4.30
191 192 3.542648 ACTTTTTATTCGGCTAGGAGGC 58.457 45.455 0.00 0.00 37.44 4.70
192 193 3.200165 ACTTTTTATTCGGCTAGGAGGCT 59.800 43.478 0.00 0.00 38.85 4.58
193 194 2.910688 TTTATTCGGCTAGGAGGCTG 57.089 50.000 0.00 0.00 38.85 4.85
194 195 1.789523 TTATTCGGCTAGGAGGCTGT 58.210 50.000 0.00 0.00 38.85 4.40
195 196 1.789523 TATTCGGCTAGGAGGCTGTT 58.210 50.000 0.00 0.00 38.85 3.16
196 197 0.466124 ATTCGGCTAGGAGGCTGTTC 59.534 55.000 0.00 0.00 38.85 3.18
197 198 0.614979 TTCGGCTAGGAGGCTGTTCT 60.615 55.000 0.00 0.00 38.85 3.01
198 199 0.614979 TCGGCTAGGAGGCTGTTCTT 60.615 55.000 0.00 0.00 38.85 2.52
199 200 0.250513 CGGCTAGGAGGCTGTTCTTT 59.749 55.000 0.00 0.00 38.85 2.52
200 201 1.740718 CGGCTAGGAGGCTGTTCTTTC 60.741 57.143 0.00 0.00 38.85 2.62
201 202 1.279271 GGCTAGGAGGCTGTTCTTTCA 59.721 52.381 0.00 0.00 37.85 2.69
202 203 2.351455 GCTAGGAGGCTGTTCTTTCAC 58.649 52.381 0.00 0.00 0.00 3.18
203 204 2.027653 GCTAGGAGGCTGTTCTTTCACT 60.028 50.000 0.00 0.00 0.00 3.41
204 205 3.195825 GCTAGGAGGCTGTTCTTTCACTA 59.804 47.826 0.00 0.00 0.00 2.74
205 206 3.686916 AGGAGGCTGTTCTTTCACTAC 57.313 47.619 0.00 0.00 0.00 2.73
206 207 3.243724 AGGAGGCTGTTCTTTCACTACT 58.756 45.455 0.00 0.00 0.00 2.57
207 208 3.007398 AGGAGGCTGTTCTTTCACTACTG 59.993 47.826 0.00 0.00 0.00 2.74
208 209 3.006967 GGAGGCTGTTCTTTCACTACTGA 59.993 47.826 0.00 0.00 0.00 3.41
209 210 4.323104 GGAGGCTGTTCTTTCACTACTGAT 60.323 45.833 0.00 0.00 0.00 2.90
210 211 4.573900 AGGCTGTTCTTTCACTACTGATG 58.426 43.478 0.00 0.00 0.00 3.07
211 212 4.040952 AGGCTGTTCTTTCACTACTGATGT 59.959 41.667 0.00 0.00 0.00 3.06
212 213 4.153117 GGCTGTTCTTTCACTACTGATGTG 59.847 45.833 0.00 0.00 36.82 3.21
213 214 4.991056 GCTGTTCTTTCACTACTGATGTGA 59.009 41.667 0.00 0.00 41.94 3.58
214 215 5.107298 GCTGTTCTTTCACTACTGATGTGAC 60.107 44.000 6.91 0.00 43.13 3.67
215 216 6.161855 TGTTCTTTCACTACTGATGTGACT 57.838 37.500 6.91 0.00 43.13 3.41
216 217 5.985530 TGTTCTTTCACTACTGATGTGACTG 59.014 40.000 6.91 4.49 43.13 3.51
217 218 4.560128 TCTTTCACTACTGATGTGACTGC 58.440 43.478 6.91 0.00 43.13 4.40
218 219 4.281941 TCTTTCACTACTGATGTGACTGCT 59.718 41.667 6.91 0.00 43.13 4.24
219 220 4.607293 TTCACTACTGATGTGACTGCTT 57.393 40.909 6.91 0.00 43.13 3.91
220 221 4.607293 TCACTACTGATGTGACTGCTTT 57.393 40.909 0.00 0.00 39.23 3.51
221 222 4.960938 TCACTACTGATGTGACTGCTTTT 58.039 39.130 0.00 0.00 39.23 2.27
222 223 6.096673 TCACTACTGATGTGACTGCTTTTA 57.903 37.500 0.00 0.00 39.23 1.52
223 224 6.159293 TCACTACTGATGTGACTGCTTTTAG 58.841 40.000 0.00 0.00 39.23 1.85
224 225 4.932200 ACTACTGATGTGACTGCTTTTAGC 59.068 41.667 0.00 0.00 42.82 3.09
225 226 2.738846 ACTGATGTGACTGCTTTTAGCG 59.261 45.455 0.00 0.00 46.26 4.26
226 227 2.738846 CTGATGTGACTGCTTTTAGCGT 59.261 45.455 0.00 0.00 46.26 5.07
227 228 3.920446 TGATGTGACTGCTTTTAGCGTA 58.080 40.909 0.00 0.00 46.26 4.42
228 229 4.311606 TGATGTGACTGCTTTTAGCGTAA 58.688 39.130 0.00 0.00 46.26 3.18
229 230 4.752604 TGATGTGACTGCTTTTAGCGTAAA 59.247 37.500 0.00 0.00 46.26 2.01
230 231 5.411361 TGATGTGACTGCTTTTAGCGTAAAT 59.589 36.000 0.00 0.00 46.26 1.40
231 232 6.592220 TGATGTGACTGCTTTTAGCGTAAATA 59.408 34.615 0.00 0.00 46.26 1.40
232 233 6.788684 TGTGACTGCTTTTAGCGTAAATAA 57.211 33.333 0.00 0.00 46.26 1.40
233 234 7.192148 TGTGACTGCTTTTAGCGTAAATAAA 57.808 32.000 0.00 0.00 46.26 1.40
234 235 7.295201 TGTGACTGCTTTTAGCGTAAATAAAG 58.705 34.615 0.00 0.00 46.26 1.85
235 236 7.171848 TGTGACTGCTTTTAGCGTAAATAAAGA 59.828 33.333 0.00 0.00 46.26 2.52
236 237 7.477733 GTGACTGCTTTTAGCGTAAATAAAGAC 59.522 37.037 0.00 0.00 46.26 3.01
237 238 7.171848 TGACTGCTTTTAGCGTAAATAAAGACA 59.828 33.333 0.00 0.00 46.26 3.41
238 239 7.295930 ACTGCTTTTAGCGTAAATAAAGACAC 58.704 34.615 0.00 0.00 46.26 3.67
239 240 6.301108 TGCTTTTAGCGTAAATAAAGACACG 58.699 36.000 0.00 0.00 46.26 4.49
245 246 4.896562 CGTAAATAAAGACACGCTGTGA 57.103 40.909 14.18 0.00 36.96 3.58
246 247 5.258685 CGTAAATAAAGACACGCTGTGAA 57.741 39.130 14.18 0.00 36.96 3.18
247 248 5.672051 CGTAAATAAAGACACGCTGTGAAA 58.328 37.500 14.18 0.00 36.96 2.69
248 249 5.783654 CGTAAATAAAGACACGCTGTGAAAG 59.216 40.000 14.18 0.00 36.96 2.62
249 250 6.346279 CGTAAATAAAGACACGCTGTGAAAGA 60.346 38.462 14.18 0.00 36.96 2.52
250 251 6.371809 AAATAAAGACACGCTGTGAAAGAA 57.628 33.333 14.18 0.00 36.96 2.52
251 252 6.560253 AATAAAGACACGCTGTGAAAGAAT 57.440 33.333 14.18 1.93 36.96 2.40
252 253 4.474226 AAAGACACGCTGTGAAAGAATC 57.526 40.909 14.18 2.32 36.96 2.52
253 254 3.393089 AGACACGCTGTGAAAGAATCT 57.607 42.857 14.18 4.25 36.96 2.40
254 255 3.062763 AGACACGCTGTGAAAGAATCTG 58.937 45.455 14.18 0.00 36.96 2.90
255 256 2.802816 GACACGCTGTGAAAGAATCTGT 59.197 45.455 14.18 0.00 36.96 3.41
256 257 3.987868 GACACGCTGTGAAAGAATCTGTA 59.012 43.478 14.18 0.00 36.96 2.74
257 258 4.569943 ACACGCTGTGAAAGAATCTGTAT 58.430 39.130 14.18 0.00 36.96 2.29
258 259 4.627467 ACACGCTGTGAAAGAATCTGTATC 59.373 41.667 14.18 0.00 36.96 2.24
259 260 4.867047 CACGCTGTGAAAGAATCTGTATCT 59.133 41.667 3.04 0.00 35.23 1.98
260 261 5.349817 CACGCTGTGAAAGAATCTGTATCTT 59.650 40.000 3.04 0.00 38.75 2.40
261 262 6.531594 CACGCTGTGAAAGAATCTGTATCTTA 59.468 38.462 3.04 0.00 36.14 2.10
262 263 6.531948 ACGCTGTGAAAGAATCTGTATCTTAC 59.468 38.462 0.00 0.00 36.14 2.34
263 264 6.754209 CGCTGTGAAAGAATCTGTATCTTACT 59.246 38.462 0.00 0.00 36.14 2.24
264 265 7.915923 CGCTGTGAAAGAATCTGTATCTTACTA 59.084 37.037 0.00 0.00 36.14 1.82
265 266 9.587772 GCTGTGAAAGAATCTGTATCTTACTAA 57.412 33.333 0.00 0.00 36.14 2.24
324 325 9.667107 AGGACTATTATCAATCTTCAACGAAAA 57.333 29.630 0.00 0.00 0.00 2.29
325 326 9.704098 GGACTATTATCAATCTTCAACGAAAAC 57.296 33.333 0.00 0.00 0.00 2.43
328 329 9.708222 CTATTATCAATCTTCAACGAAAACTGG 57.292 33.333 0.00 0.00 0.00 4.00
329 330 7.737972 TTATCAATCTTCAACGAAAACTGGA 57.262 32.000 0.00 0.00 0.00 3.86
330 331 5.673337 TCAATCTTCAACGAAAACTGGAG 57.327 39.130 0.00 0.00 0.00 3.86
331 332 4.024048 TCAATCTTCAACGAAAACTGGAGC 60.024 41.667 0.00 0.00 0.00 4.70
332 333 3.194005 TCTTCAACGAAAACTGGAGCT 57.806 42.857 0.00 0.00 0.00 4.09
333 334 4.330944 TCTTCAACGAAAACTGGAGCTA 57.669 40.909 0.00 0.00 0.00 3.32
334 335 4.307432 TCTTCAACGAAAACTGGAGCTAG 58.693 43.478 0.00 0.00 0.00 3.42
335 336 3.746045 TCAACGAAAACTGGAGCTAGT 57.254 42.857 0.00 0.00 0.00 2.57
336 337 3.390135 TCAACGAAAACTGGAGCTAGTG 58.610 45.455 0.00 0.00 0.00 2.74
337 338 3.131396 CAACGAAAACTGGAGCTAGTGT 58.869 45.455 0.00 0.00 0.00 3.55
338 339 3.470645 ACGAAAACTGGAGCTAGTGTT 57.529 42.857 0.00 0.00 30.87 3.32
339 340 3.391049 ACGAAAACTGGAGCTAGTGTTC 58.609 45.455 8.88 8.88 40.15 3.18
340 341 3.181469 ACGAAAACTGGAGCTAGTGTTCA 60.181 43.478 16.40 0.00 42.50 3.18
341 342 3.807622 CGAAAACTGGAGCTAGTGTTCAA 59.192 43.478 16.40 0.00 42.50 2.69
342 343 4.318831 CGAAAACTGGAGCTAGTGTTCAAC 60.319 45.833 16.40 0.00 42.50 3.18
343 344 3.838244 AACTGGAGCTAGTGTTCAACA 57.162 42.857 0.00 0.00 0.00 3.33
344 345 3.838244 ACTGGAGCTAGTGTTCAACAA 57.162 42.857 0.00 0.00 0.00 2.83
345 346 3.733337 ACTGGAGCTAGTGTTCAACAAG 58.267 45.455 0.00 0.00 0.00 3.16
346 347 3.388024 ACTGGAGCTAGTGTTCAACAAGA 59.612 43.478 0.00 0.00 0.00 3.02
347 348 4.141711 ACTGGAGCTAGTGTTCAACAAGAA 60.142 41.667 0.00 0.00 0.00 2.52
348 349 4.776349 TGGAGCTAGTGTTCAACAAGAAA 58.224 39.130 0.00 0.00 38.13 2.52
349 350 4.816385 TGGAGCTAGTGTTCAACAAGAAAG 59.184 41.667 0.00 0.00 38.13 2.62
350 351 5.057149 GGAGCTAGTGTTCAACAAGAAAGA 58.943 41.667 0.00 0.00 38.13 2.52
351 352 5.527582 GGAGCTAGTGTTCAACAAGAAAGAA 59.472 40.000 0.00 0.00 38.13 2.52
352 353 6.364945 AGCTAGTGTTCAACAAGAAAGAAC 57.635 37.500 0.00 0.00 41.42 3.01
401 402 4.529897 ACCCCTTTGTATTTATCCCGTTC 58.470 43.478 0.00 0.00 0.00 3.95
442 443 4.901197 ATGTTCCACACCTGTACATGTA 57.099 40.909 0.08 0.08 0.00 2.29
443 444 4.901197 TGTTCCACACCTGTACATGTAT 57.099 40.909 9.18 0.00 0.00 2.29
603 606 4.344865 GTTCCTTCCCGCCCAGCA 62.345 66.667 0.00 0.00 0.00 4.41
1037 1097 1.409064 CTATGTTGCTGTCCCTCGCTA 59.591 52.381 0.00 0.00 0.00 4.26
1150 1210 3.005539 AGGTCTGCTGTCCGCCAT 61.006 61.111 1.49 0.00 38.05 4.40
1276 1336 2.073252 TCGTGCCTATGATGAGAGGT 57.927 50.000 0.00 0.00 32.57 3.85
1363 1423 0.674269 TGATGATGCTCGTGCTGCAA 60.674 50.000 2.77 0.00 44.01 4.08
1380 1440 2.365293 TGCAACTGTTCTCACTGCTAGA 59.635 45.455 0.00 0.00 0.00 2.43
1402 1462 3.071602 AGTTCTGCCTCAGTTTGCTTCTA 59.928 43.478 0.00 0.00 32.61 2.10
1483 1543 3.519510 GCCCTCTGGTGATGCCTTATATA 59.480 47.826 0.00 0.00 38.35 0.86
1644 1704 1.065709 GTCCAGGCCGATTTGGAGTTA 60.066 52.381 11.61 0.00 43.80 2.24
1718 1778 0.937304 GCTCAGTTGTTTGCTCGTGA 59.063 50.000 0.00 0.00 0.00 4.35
1740 1800 2.103094 CCGTATTTCTCTCATGGAGGCA 59.897 50.000 10.23 0.61 42.10 4.75
2244 2304 2.755650 TCTGTTTTGTCCTCTCTTCGC 58.244 47.619 0.00 0.00 0.00 4.70
2498 2564 2.509336 CTCGCCGCCGTGATTCTT 60.509 61.111 0.00 0.00 35.54 2.52
3160 3226 0.541764 TTCCGCCTCATTTTTGGGCT 60.542 50.000 0.00 0.00 43.29 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.884465 GGTCTTTGCAATACATCAGTATTAATC 57.116 33.333 0.00 0.00 46.48 1.75
4 5 9.632638 AGGTCTTTGCAATACATCAGTATTAAT 57.367 29.630 0.00 0.00 46.48 1.40
5 6 8.892723 CAGGTCTTTGCAATACATCAGTATTAA 58.107 33.333 0.00 0.00 46.48 1.40
6 7 8.046708 ACAGGTCTTTGCAATACATCAGTATTA 58.953 33.333 0.00 0.00 46.48 0.98
8 9 6.418101 ACAGGTCTTTGCAATACATCAGTAT 58.582 36.000 0.00 0.00 42.66 2.12
9 10 5.804639 ACAGGTCTTTGCAATACATCAGTA 58.195 37.500 0.00 0.00 34.10 2.74
10 11 4.655963 ACAGGTCTTTGCAATACATCAGT 58.344 39.130 0.00 0.00 0.00 3.41
11 12 5.048504 ACAACAGGTCTTTGCAATACATCAG 60.049 40.000 0.00 0.00 0.00 2.90
12 13 4.826733 ACAACAGGTCTTTGCAATACATCA 59.173 37.500 0.00 0.00 0.00 3.07
13 14 5.376854 ACAACAGGTCTTTGCAATACATC 57.623 39.130 0.00 0.00 0.00 3.06
14 15 5.068987 ACAACAACAGGTCTTTGCAATACAT 59.931 36.000 0.00 0.00 0.00 2.29
15 16 4.400884 ACAACAACAGGTCTTTGCAATACA 59.599 37.500 0.00 0.00 0.00 2.29
16 17 4.932146 ACAACAACAGGTCTTTGCAATAC 58.068 39.130 0.00 1.54 0.00 1.89
17 18 5.590530 AACAACAACAGGTCTTTGCAATA 57.409 34.783 0.00 0.00 0.00 1.90
18 19 4.470334 AACAACAACAGGTCTTTGCAAT 57.530 36.364 0.00 0.00 0.00 3.56
19 20 3.951775 AACAACAACAGGTCTTTGCAA 57.048 38.095 0.00 0.00 0.00 4.08
20 21 3.951775 AAACAACAACAGGTCTTTGCA 57.048 38.095 0.00 0.00 0.00 4.08
21 22 6.902224 AATAAAACAACAACAGGTCTTTGC 57.098 33.333 0.00 0.00 0.00 3.68
22 23 8.702163 AGAAATAAAACAACAACAGGTCTTTG 57.298 30.769 0.00 0.00 0.00 2.77
23 24 9.366216 GAAGAAATAAAACAACAACAGGTCTTT 57.634 29.630 0.00 0.00 0.00 2.52
24 25 8.527810 TGAAGAAATAAAACAACAACAGGTCTT 58.472 29.630 0.00 0.00 0.00 3.01
25 26 8.062065 TGAAGAAATAAAACAACAACAGGTCT 57.938 30.769 0.00 0.00 0.00 3.85
26 27 8.755018 CATGAAGAAATAAAACAACAACAGGTC 58.245 33.333 0.00 0.00 0.00 3.85
27 28 7.224557 GCATGAAGAAATAAAACAACAACAGGT 59.775 33.333 0.00 0.00 0.00 4.00
28 29 7.307337 GGCATGAAGAAATAAAACAACAACAGG 60.307 37.037 0.00 0.00 0.00 4.00
29 30 7.307337 GGGCATGAAGAAATAAAACAACAACAG 60.307 37.037 0.00 0.00 0.00 3.16
30 31 6.481644 GGGCATGAAGAAATAAAACAACAACA 59.518 34.615 0.00 0.00 0.00 3.33
31 32 6.073276 GGGGCATGAAGAAATAAAACAACAAC 60.073 38.462 0.00 0.00 0.00 3.32
32 33 5.994668 GGGGCATGAAGAAATAAAACAACAA 59.005 36.000 0.00 0.00 0.00 2.83
33 34 5.306678 AGGGGCATGAAGAAATAAAACAACA 59.693 36.000 0.00 0.00 0.00 3.33
34 35 5.793817 AGGGGCATGAAGAAATAAAACAAC 58.206 37.500 0.00 0.00 0.00 3.32
35 36 6.432403 AAGGGGCATGAAGAAATAAAACAA 57.568 33.333 0.00 0.00 0.00 2.83
36 37 6.432403 AAAGGGGCATGAAGAAATAAAACA 57.568 33.333 0.00 0.00 0.00 2.83
37 38 8.257306 TCATAAAGGGGCATGAAGAAATAAAAC 58.743 33.333 0.00 0.00 0.00 2.43
38 39 8.257306 GTCATAAAGGGGCATGAAGAAATAAAA 58.743 33.333 0.00 0.00 33.15 1.52
39 40 7.398618 TGTCATAAAGGGGCATGAAGAAATAAA 59.601 33.333 0.00 0.00 33.15 1.40
40 41 6.894654 TGTCATAAAGGGGCATGAAGAAATAA 59.105 34.615 0.00 0.00 33.15 1.40
41 42 6.430864 TGTCATAAAGGGGCATGAAGAAATA 58.569 36.000 0.00 0.00 33.15 1.40
42 43 5.271598 TGTCATAAAGGGGCATGAAGAAAT 58.728 37.500 0.00 0.00 33.15 2.17
43 44 4.671831 TGTCATAAAGGGGCATGAAGAAA 58.328 39.130 0.00 0.00 33.15 2.52
44 45 4.314522 TGTCATAAAGGGGCATGAAGAA 57.685 40.909 0.00 0.00 33.15 2.52
45 46 4.314522 TTGTCATAAAGGGGCATGAAGA 57.685 40.909 0.00 0.00 33.15 2.87
46 47 4.706476 TCTTTGTCATAAAGGGGCATGAAG 59.294 41.667 0.00 0.00 33.15 3.02
47 48 4.462483 GTCTTTGTCATAAAGGGGCATGAA 59.538 41.667 0.00 0.00 33.15 2.57
48 49 4.016444 GTCTTTGTCATAAAGGGGCATGA 58.984 43.478 0.00 0.00 0.00 3.07
49 50 4.019174 AGTCTTTGTCATAAAGGGGCATG 58.981 43.478 0.00 0.00 0.00 4.06
50 51 4.322057 AGTCTTTGTCATAAAGGGGCAT 57.678 40.909 0.00 0.00 0.00 4.40
51 52 3.806949 AGTCTTTGTCATAAAGGGGCA 57.193 42.857 0.00 0.00 0.00 5.36
52 53 4.522789 TGAAAGTCTTTGTCATAAAGGGGC 59.477 41.667 1.60 0.00 0.00 5.80
53 54 6.003950 TCTGAAAGTCTTTGTCATAAAGGGG 58.996 40.000 1.60 0.00 33.76 4.79
54 55 7.693969 ATCTGAAAGTCTTTGTCATAAAGGG 57.306 36.000 1.60 0.00 33.76 3.95
55 56 8.786898 TCAATCTGAAAGTCTTTGTCATAAAGG 58.213 33.333 1.60 0.00 33.76 3.11
56 57 9.604626 GTCAATCTGAAAGTCTTTGTCATAAAG 57.395 33.333 1.60 0.00 33.76 1.85
57 58 9.342308 AGTCAATCTGAAAGTCTTTGTCATAAA 57.658 29.630 1.60 0.00 33.76 1.40
58 59 8.777413 CAGTCAATCTGAAAGTCTTTGTCATAA 58.223 33.333 1.60 0.00 46.27 1.90
59 60 7.095060 GCAGTCAATCTGAAAGTCTTTGTCATA 60.095 37.037 1.60 0.00 46.27 2.15
60 61 6.293845 GCAGTCAATCTGAAAGTCTTTGTCAT 60.294 38.462 1.60 0.00 46.27 3.06
61 62 5.008019 GCAGTCAATCTGAAAGTCTTTGTCA 59.992 40.000 1.60 0.00 46.27 3.58
62 63 5.238214 AGCAGTCAATCTGAAAGTCTTTGTC 59.762 40.000 1.60 0.00 46.27 3.18
63 64 5.128919 AGCAGTCAATCTGAAAGTCTTTGT 58.871 37.500 1.60 0.00 46.27 2.83
64 65 5.686159 AGCAGTCAATCTGAAAGTCTTTG 57.314 39.130 1.60 0.00 46.27 2.77
65 66 6.705863 AAAGCAGTCAATCTGAAAGTCTTT 57.294 33.333 0.00 0.00 46.27 2.52
66 67 6.460676 CCAAAAGCAGTCAATCTGAAAGTCTT 60.461 38.462 0.00 0.00 46.27 3.01
67 68 5.009410 CCAAAAGCAGTCAATCTGAAAGTCT 59.991 40.000 0.00 0.00 46.27 3.24
68 69 5.218139 CCAAAAGCAGTCAATCTGAAAGTC 58.782 41.667 0.00 0.00 46.27 3.01
69 70 4.038402 CCCAAAAGCAGTCAATCTGAAAGT 59.962 41.667 0.00 0.00 46.27 2.66
70 71 4.553323 CCCAAAAGCAGTCAATCTGAAAG 58.447 43.478 0.00 0.00 46.27 2.62
71 72 3.321682 CCCCAAAAGCAGTCAATCTGAAA 59.678 43.478 0.00 0.00 46.27 2.69
72 73 2.892852 CCCCAAAAGCAGTCAATCTGAA 59.107 45.455 0.00 0.00 46.27 3.02
73 74 2.517959 CCCCAAAAGCAGTCAATCTGA 58.482 47.619 0.00 0.00 46.27 3.27
74 75 1.067354 GCCCCAAAAGCAGTCAATCTG 60.067 52.381 0.00 0.00 46.12 2.90
75 76 1.203100 AGCCCCAAAAGCAGTCAATCT 60.203 47.619 0.00 0.00 0.00 2.40
76 77 1.260544 AGCCCCAAAAGCAGTCAATC 58.739 50.000 0.00 0.00 0.00 2.67
77 78 2.225117 ACTAGCCCCAAAAGCAGTCAAT 60.225 45.455 0.00 0.00 0.00 2.57
78 79 1.144913 ACTAGCCCCAAAAGCAGTCAA 59.855 47.619 0.00 0.00 0.00 3.18
79 80 0.771127 ACTAGCCCCAAAAGCAGTCA 59.229 50.000 0.00 0.00 0.00 3.41
80 81 2.781681 TACTAGCCCCAAAAGCAGTC 57.218 50.000 0.00 0.00 0.00 3.51
81 82 3.739401 AATACTAGCCCCAAAAGCAGT 57.261 42.857 0.00 0.00 0.00 4.40
82 83 5.405935 AAAAATACTAGCCCCAAAAGCAG 57.594 39.130 0.00 0.00 0.00 4.24
83 84 7.489239 AATAAAAATACTAGCCCCAAAAGCA 57.511 32.000 0.00 0.00 0.00 3.91
84 85 9.309516 GTTAATAAAAATACTAGCCCCAAAAGC 57.690 33.333 0.00 0.00 0.00 3.51
105 106 8.837389 GTCCAGTCTAAGAAGTGTTTTGTTAAT 58.163 33.333 0.00 0.00 0.00 1.40
106 107 8.044908 AGTCCAGTCTAAGAAGTGTTTTGTTAA 58.955 33.333 0.00 0.00 0.00 2.01
107 108 7.562135 AGTCCAGTCTAAGAAGTGTTTTGTTA 58.438 34.615 0.00 0.00 0.00 2.41
108 109 6.415573 AGTCCAGTCTAAGAAGTGTTTTGTT 58.584 36.000 0.00 0.00 0.00 2.83
109 110 5.990668 AGTCCAGTCTAAGAAGTGTTTTGT 58.009 37.500 0.00 0.00 0.00 2.83
110 111 7.210873 AGTAGTCCAGTCTAAGAAGTGTTTTG 58.789 38.462 0.00 0.00 0.00 2.44
111 112 7.362802 AGTAGTCCAGTCTAAGAAGTGTTTT 57.637 36.000 0.00 0.00 0.00 2.43
112 113 6.980416 AGTAGTCCAGTCTAAGAAGTGTTT 57.020 37.500 0.00 0.00 0.00 2.83
113 114 6.980416 AAGTAGTCCAGTCTAAGAAGTGTT 57.020 37.500 0.00 0.00 0.00 3.32
114 115 7.889073 TGATAAGTAGTCCAGTCTAAGAAGTGT 59.111 37.037 0.00 0.00 0.00 3.55
115 116 8.282455 TGATAAGTAGTCCAGTCTAAGAAGTG 57.718 38.462 0.00 0.00 0.00 3.16
116 117 8.880991 TTGATAAGTAGTCCAGTCTAAGAAGT 57.119 34.615 0.00 0.00 0.00 3.01
117 118 9.743057 CATTGATAAGTAGTCCAGTCTAAGAAG 57.257 37.037 0.00 0.00 0.00 2.85
118 119 9.256228 ACATTGATAAGTAGTCCAGTCTAAGAA 57.744 33.333 0.00 0.00 0.00 2.52
119 120 8.824756 ACATTGATAAGTAGTCCAGTCTAAGA 57.175 34.615 0.00 0.00 0.00 2.10
122 123 9.132923 CCTTACATTGATAAGTAGTCCAGTCTA 57.867 37.037 0.00 0.00 31.29 2.59
123 124 7.418025 GCCTTACATTGATAAGTAGTCCAGTCT 60.418 40.741 0.00 0.00 31.29 3.24
124 125 6.702282 GCCTTACATTGATAAGTAGTCCAGTC 59.298 42.308 0.00 0.00 31.29 3.51
125 126 6.408206 GGCCTTACATTGATAAGTAGTCCAGT 60.408 42.308 0.00 0.00 31.29 4.00
126 127 5.992217 GGCCTTACATTGATAAGTAGTCCAG 59.008 44.000 0.00 0.00 31.29 3.86
127 128 5.452776 CGGCCTTACATTGATAAGTAGTCCA 60.453 44.000 0.00 0.00 31.29 4.02
128 129 4.989168 CGGCCTTACATTGATAAGTAGTCC 59.011 45.833 0.00 0.00 31.29 3.85
129 130 4.448060 GCGGCCTTACATTGATAAGTAGTC 59.552 45.833 0.00 0.00 31.29 2.59
130 131 4.101119 AGCGGCCTTACATTGATAAGTAGT 59.899 41.667 0.00 0.00 31.29 2.73
131 132 4.632153 AGCGGCCTTACATTGATAAGTAG 58.368 43.478 0.00 0.00 31.29 2.57
132 133 4.682778 AGCGGCCTTACATTGATAAGTA 57.317 40.909 0.00 0.00 31.29 2.24
133 134 3.560636 AGCGGCCTTACATTGATAAGT 57.439 42.857 0.00 0.00 31.29 2.24
134 135 3.997021 CCTAGCGGCCTTACATTGATAAG 59.003 47.826 0.00 0.00 32.78 1.73
135 136 3.389983 ACCTAGCGGCCTTACATTGATAA 59.610 43.478 0.00 0.00 0.00 1.75
136 137 2.969950 ACCTAGCGGCCTTACATTGATA 59.030 45.455 0.00 0.00 0.00 2.15
137 138 1.768870 ACCTAGCGGCCTTACATTGAT 59.231 47.619 0.00 0.00 0.00 2.57
138 139 1.200519 ACCTAGCGGCCTTACATTGA 58.799 50.000 0.00 0.00 0.00 2.57
139 140 2.038387 AACCTAGCGGCCTTACATTG 57.962 50.000 0.00 0.00 0.00 2.82
140 141 2.026636 TCAAACCTAGCGGCCTTACATT 60.027 45.455 0.00 0.00 0.00 2.71
141 142 1.557832 TCAAACCTAGCGGCCTTACAT 59.442 47.619 0.00 0.00 0.00 2.29
142 143 0.978151 TCAAACCTAGCGGCCTTACA 59.022 50.000 0.00 0.00 0.00 2.41
143 144 1.066358 AGTCAAACCTAGCGGCCTTAC 60.066 52.381 0.00 0.00 0.00 2.34
144 145 1.272807 AGTCAAACCTAGCGGCCTTA 58.727 50.000 0.00 0.00 0.00 2.69
145 146 0.400594 AAGTCAAACCTAGCGGCCTT 59.599 50.000 0.00 0.00 0.00 4.35
146 147 0.400594 AAAGTCAAACCTAGCGGCCT 59.599 50.000 0.00 0.00 0.00 5.19
147 148 2.007608 CTAAAGTCAAACCTAGCGGCC 58.992 52.381 0.00 0.00 0.00 6.13
148 149 2.968675 TCTAAAGTCAAACCTAGCGGC 58.031 47.619 0.00 0.00 0.00 6.53
149 150 4.995487 AGTTTCTAAAGTCAAACCTAGCGG 59.005 41.667 0.00 0.00 33.66 5.52
150 151 6.541111 AAGTTTCTAAAGTCAAACCTAGCG 57.459 37.500 0.00 0.00 33.66 4.26
157 158 9.240159 GCCGAATAAAAAGTTTCTAAAGTCAAA 57.760 29.630 0.00 0.00 0.00 2.69
158 159 8.626526 AGCCGAATAAAAAGTTTCTAAAGTCAA 58.373 29.630 0.00 0.00 0.00 3.18
159 160 8.161699 AGCCGAATAAAAAGTTTCTAAAGTCA 57.838 30.769 0.00 0.00 0.00 3.41
160 161 9.756461 CTAGCCGAATAAAAAGTTTCTAAAGTC 57.244 33.333 0.00 0.00 0.00 3.01
161 162 8.727910 CCTAGCCGAATAAAAAGTTTCTAAAGT 58.272 33.333 0.00 0.00 0.00 2.66
162 163 8.943002 TCCTAGCCGAATAAAAAGTTTCTAAAG 58.057 33.333 0.00 0.00 0.00 1.85
163 164 8.851541 TCCTAGCCGAATAAAAAGTTTCTAAA 57.148 30.769 0.00 0.00 0.00 1.85
164 165 7.551617 CCTCCTAGCCGAATAAAAAGTTTCTAA 59.448 37.037 0.00 0.00 0.00 2.10
165 166 7.046033 CCTCCTAGCCGAATAAAAAGTTTCTA 58.954 38.462 0.00 0.00 0.00 2.10
166 167 5.880887 CCTCCTAGCCGAATAAAAAGTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
167 168 5.448768 GCCTCCTAGCCGAATAAAAAGTTTC 60.449 44.000 0.00 0.00 0.00 2.78
168 169 4.398358 GCCTCCTAGCCGAATAAAAAGTTT 59.602 41.667 0.00 0.00 0.00 2.66
169 170 3.945921 GCCTCCTAGCCGAATAAAAAGTT 59.054 43.478 0.00 0.00 0.00 2.66
170 171 3.200165 AGCCTCCTAGCCGAATAAAAAGT 59.800 43.478 0.00 0.00 0.00 2.66
171 172 3.561725 CAGCCTCCTAGCCGAATAAAAAG 59.438 47.826 0.00 0.00 0.00 2.27
172 173 3.054655 ACAGCCTCCTAGCCGAATAAAAA 60.055 43.478 0.00 0.00 0.00 1.94
173 174 2.504175 ACAGCCTCCTAGCCGAATAAAA 59.496 45.455 0.00 0.00 0.00 1.52
174 175 2.116238 ACAGCCTCCTAGCCGAATAAA 58.884 47.619 0.00 0.00 0.00 1.40
175 176 1.789523 ACAGCCTCCTAGCCGAATAA 58.210 50.000 0.00 0.00 0.00 1.40
176 177 1.687123 GAACAGCCTCCTAGCCGAATA 59.313 52.381 0.00 0.00 0.00 1.75
177 178 0.466124 GAACAGCCTCCTAGCCGAAT 59.534 55.000 0.00 0.00 0.00 3.34
178 179 0.614979 AGAACAGCCTCCTAGCCGAA 60.615 55.000 0.00 0.00 0.00 4.30
179 180 0.614979 AAGAACAGCCTCCTAGCCGA 60.615 55.000 0.00 0.00 0.00 5.54
180 181 0.250513 AAAGAACAGCCTCCTAGCCG 59.749 55.000 0.00 0.00 0.00 5.52
181 182 1.279271 TGAAAGAACAGCCTCCTAGCC 59.721 52.381 0.00 0.00 0.00 3.93
182 183 2.027653 AGTGAAAGAACAGCCTCCTAGC 60.028 50.000 0.00 0.00 0.00 3.42
183 184 3.971245 AGTGAAAGAACAGCCTCCTAG 57.029 47.619 0.00 0.00 0.00 3.02
184 185 4.220821 CAGTAGTGAAAGAACAGCCTCCTA 59.779 45.833 0.00 0.00 0.00 2.94
185 186 3.007398 CAGTAGTGAAAGAACAGCCTCCT 59.993 47.826 0.00 0.00 0.00 3.69
186 187 3.006967 TCAGTAGTGAAAGAACAGCCTCC 59.993 47.826 0.00 0.00 0.00 4.30
187 188 4.258702 TCAGTAGTGAAAGAACAGCCTC 57.741 45.455 0.00 0.00 0.00 4.70
188 189 4.040952 ACATCAGTAGTGAAAGAACAGCCT 59.959 41.667 3.93 0.00 35.88 4.58
189 190 4.153117 CACATCAGTAGTGAAAGAACAGCC 59.847 45.833 3.93 0.00 39.30 4.85
190 191 4.991056 TCACATCAGTAGTGAAAGAACAGC 59.009 41.667 3.93 0.00 42.57 4.40
191 192 6.145209 CAGTCACATCAGTAGTGAAAGAACAG 59.855 42.308 3.93 0.00 46.50 3.16
192 193 5.985530 CAGTCACATCAGTAGTGAAAGAACA 59.014 40.000 3.93 0.00 46.50 3.18
193 194 5.107298 GCAGTCACATCAGTAGTGAAAGAAC 60.107 44.000 3.93 1.88 46.50 3.01
194 195 4.991056 GCAGTCACATCAGTAGTGAAAGAA 59.009 41.667 3.93 0.00 46.50 2.52
195 196 4.281941 AGCAGTCACATCAGTAGTGAAAGA 59.718 41.667 3.93 0.38 46.50 2.52
196 197 4.564041 AGCAGTCACATCAGTAGTGAAAG 58.436 43.478 3.93 3.22 46.50 2.62
197 198 4.607293 AGCAGTCACATCAGTAGTGAAA 57.393 40.909 3.93 0.00 46.50 2.69
198 199 4.607293 AAGCAGTCACATCAGTAGTGAA 57.393 40.909 3.93 0.00 46.50 3.18
199 200 4.607293 AAAGCAGTCACATCAGTAGTGA 57.393 40.909 1.95 1.95 43.23 3.41
200 201 5.163913 GCTAAAAGCAGTCACATCAGTAGTG 60.164 44.000 0.00 0.00 41.89 2.74
201 202 4.932200 GCTAAAAGCAGTCACATCAGTAGT 59.068 41.667 0.00 0.00 41.89 2.73
202 203 4.032217 CGCTAAAAGCAGTCACATCAGTAG 59.968 45.833 0.00 0.00 42.58 2.57
203 204 3.926527 CGCTAAAAGCAGTCACATCAGTA 59.073 43.478 0.00 0.00 42.58 2.74
204 205 2.738846 CGCTAAAAGCAGTCACATCAGT 59.261 45.455 0.00 0.00 42.58 3.41
205 206 2.738846 ACGCTAAAAGCAGTCACATCAG 59.261 45.455 0.00 0.00 42.58 2.90
206 207 2.766313 ACGCTAAAAGCAGTCACATCA 58.234 42.857 0.00 0.00 42.58 3.07
207 208 4.921470 TTACGCTAAAAGCAGTCACATC 57.079 40.909 0.00 0.00 42.58 3.06
208 209 5.880054 ATTTACGCTAAAAGCAGTCACAT 57.120 34.783 0.00 0.00 42.58 3.21
209 210 6.788684 TTATTTACGCTAAAAGCAGTCACA 57.211 33.333 0.00 0.00 42.58 3.58
210 211 7.477733 GTCTTTATTTACGCTAAAAGCAGTCAC 59.522 37.037 0.00 0.00 42.58 3.67
211 212 7.171848 TGTCTTTATTTACGCTAAAAGCAGTCA 59.828 33.333 0.00 0.00 42.58 3.41
212 213 7.477733 GTGTCTTTATTTACGCTAAAAGCAGTC 59.522 37.037 0.00 0.00 42.58 3.51
213 214 7.295930 GTGTCTTTATTTACGCTAAAAGCAGT 58.704 34.615 0.00 1.38 42.58 4.40
214 215 6.461698 CGTGTCTTTATTTACGCTAAAAGCAG 59.538 38.462 0.00 0.00 42.58 4.24
215 216 6.301108 CGTGTCTTTATTTACGCTAAAAGCA 58.699 36.000 0.00 0.00 42.58 3.91
216 217 6.754656 CGTGTCTTTATTTACGCTAAAAGC 57.245 37.500 0.00 0.00 38.02 3.51
224 225 4.896562 TCACAGCGTGTCTTTATTTACG 57.103 40.909 8.22 0.00 39.37 3.18
225 226 6.884187 TCTTTCACAGCGTGTCTTTATTTAC 58.116 36.000 8.22 0.00 34.79 2.01
226 227 7.485418 TTCTTTCACAGCGTGTCTTTATTTA 57.515 32.000 8.22 0.00 34.79 1.40
227 228 6.371809 TTCTTTCACAGCGTGTCTTTATTT 57.628 33.333 8.22 0.00 34.79 1.40
228 229 6.428159 AGATTCTTTCACAGCGTGTCTTTATT 59.572 34.615 8.22 0.00 34.79 1.40
229 230 5.934625 AGATTCTTTCACAGCGTGTCTTTAT 59.065 36.000 8.22 0.64 34.79 1.40
230 231 5.177511 CAGATTCTTTCACAGCGTGTCTTTA 59.822 40.000 8.22 0.00 34.79 1.85
231 232 4.024556 CAGATTCTTTCACAGCGTGTCTTT 60.025 41.667 8.22 0.00 34.79 2.52
232 233 3.496130 CAGATTCTTTCACAGCGTGTCTT 59.504 43.478 8.22 0.00 34.79 3.01
233 234 3.062763 CAGATTCTTTCACAGCGTGTCT 58.937 45.455 8.22 1.54 34.79 3.41
234 235 2.802816 ACAGATTCTTTCACAGCGTGTC 59.197 45.455 8.22 0.00 34.79 3.67
235 236 2.838736 ACAGATTCTTTCACAGCGTGT 58.161 42.857 8.22 0.00 34.79 4.49
236 237 4.867047 AGATACAGATTCTTTCACAGCGTG 59.133 41.667 2.79 2.79 34.45 5.34
237 238 5.078411 AGATACAGATTCTTTCACAGCGT 57.922 39.130 0.00 0.00 0.00 5.07
238 239 6.754209 AGTAAGATACAGATTCTTTCACAGCG 59.246 38.462 0.00 0.00 35.19 5.18
239 240 9.587772 TTAGTAAGATACAGATTCTTTCACAGC 57.412 33.333 0.00 0.00 35.19 4.40
298 299 9.667107 TTTTCGTTGAAGATTGATAATAGTCCT 57.333 29.630 0.00 0.00 0.00 3.85
299 300 9.704098 GTTTTCGTTGAAGATTGATAATAGTCC 57.296 33.333 0.00 0.00 0.00 3.85
302 303 9.708222 CCAGTTTTCGTTGAAGATTGATAATAG 57.292 33.333 0.00 0.00 0.00 1.73
303 304 9.443323 TCCAGTTTTCGTTGAAGATTGATAATA 57.557 29.630 0.00 0.00 0.00 0.98
304 305 8.335532 TCCAGTTTTCGTTGAAGATTGATAAT 57.664 30.769 0.00 0.00 0.00 1.28
305 306 7.573096 GCTCCAGTTTTCGTTGAAGATTGATAA 60.573 37.037 0.00 0.00 0.00 1.75
306 307 6.128282 GCTCCAGTTTTCGTTGAAGATTGATA 60.128 38.462 0.00 0.00 0.00 2.15
307 308 5.335191 GCTCCAGTTTTCGTTGAAGATTGAT 60.335 40.000 0.00 0.00 0.00 2.57
308 309 4.024048 GCTCCAGTTTTCGTTGAAGATTGA 60.024 41.667 0.00 0.00 0.00 2.57
309 310 4.023707 AGCTCCAGTTTTCGTTGAAGATTG 60.024 41.667 0.00 0.00 0.00 2.67
310 311 4.137543 AGCTCCAGTTTTCGTTGAAGATT 58.862 39.130 0.00 0.00 0.00 2.40
311 312 3.744660 AGCTCCAGTTTTCGTTGAAGAT 58.255 40.909 0.00 0.00 0.00 2.40
312 313 3.194005 AGCTCCAGTTTTCGTTGAAGA 57.806 42.857 0.00 0.00 0.00 2.87
313 314 4.058817 ACTAGCTCCAGTTTTCGTTGAAG 58.941 43.478 0.00 0.00 0.00 3.02
314 315 3.807622 CACTAGCTCCAGTTTTCGTTGAA 59.192 43.478 0.00 0.00 0.00 2.69
315 316 3.181469 ACACTAGCTCCAGTTTTCGTTGA 60.181 43.478 0.00 0.00 0.00 3.18
316 317 3.131396 ACACTAGCTCCAGTTTTCGTTG 58.869 45.455 0.00 0.00 0.00 4.10
317 318 3.470645 ACACTAGCTCCAGTTTTCGTT 57.529 42.857 0.00 0.00 0.00 3.85
318 319 3.181469 TGAACACTAGCTCCAGTTTTCGT 60.181 43.478 9.77 0.00 37.82 3.85
319 320 3.390135 TGAACACTAGCTCCAGTTTTCG 58.610 45.455 9.77 0.00 37.82 3.46
320 321 4.574828 TGTTGAACACTAGCTCCAGTTTTC 59.425 41.667 8.11 8.11 36.30 2.29
321 322 4.523083 TGTTGAACACTAGCTCCAGTTTT 58.477 39.130 0.00 0.00 0.00 2.43
322 323 4.150897 TGTTGAACACTAGCTCCAGTTT 57.849 40.909 0.00 0.00 0.00 2.66
323 324 3.838244 TGTTGAACACTAGCTCCAGTT 57.162 42.857 0.00 0.00 0.00 3.16
324 325 3.388024 TCTTGTTGAACACTAGCTCCAGT 59.612 43.478 0.00 0.00 0.00 4.00
325 326 3.995199 TCTTGTTGAACACTAGCTCCAG 58.005 45.455 0.00 0.00 0.00 3.86
326 327 4.415881 TTCTTGTTGAACACTAGCTCCA 57.584 40.909 0.00 0.00 0.00 3.86
327 328 5.057149 TCTTTCTTGTTGAACACTAGCTCC 58.943 41.667 0.00 0.00 33.88 4.70
328 329 6.258947 AGTTCTTTCTTGTTGAACACTAGCTC 59.741 38.462 0.00 0.00 41.56 4.09
329 330 6.037610 CAGTTCTTTCTTGTTGAACACTAGCT 59.962 38.462 0.00 0.00 41.56 3.32
330 331 6.183360 ACAGTTCTTTCTTGTTGAACACTAGC 60.183 38.462 0.00 0.00 41.56 3.42
331 332 7.308782 ACAGTTCTTTCTTGTTGAACACTAG 57.691 36.000 0.00 0.00 41.56 2.57
332 333 7.681939 AACAGTTCTTTCTTGTTGAACACTA 57.318 32.000 0.00 0.00 41.56 2.74
333 334 6.575162 AACAGTTCTTTCTTGTTGAACACT 57.425 33.333 0.00 0.00 41.56 3.55
334 335 7.748847 TCTAACAGTTCTTTCTTGTTGAACAC 58.251 34.615 0.00 0.00 41.56 3.32
335 336 7.606456 ACTCTAACAGTTCTTTCTTGTTGAACA 59.394 33.333 0.00 0.00 41.56 3.18
336 337 7.975750 ACTCTAACAGTTCTTTCTTGTTGAAC 58.024 34.615 0.00 0.00 40.00 3.18
337 338 8.561738 AACTCTAACAGTTCTTTCTTGTTGAA 57.438 30.769 0.00 0.00 42.07 2.69
338 339 9.832445 ATAACTCTAACAGTTCTTTCTTGTTGA 57.168 29.630 0.00 0.00 42.07 3.18
401 402 5.880901 ACATATGCAGGAAACCCCTTATAG 58.119 41.667 1.58 0.00 44.85 1.31
603 606 2.593956 GGGCGGGAGAAGAAGTGGT 61.594 63.158 0.00 0.00 0.00 4.16
1037 1097 1.414158 ACCATCGAAGATCACCGGAT 58.586 50.000 9.46 0.00 45.12 4.18
1233 1293 1.065701 GCAGCCTCATCAGCAATCTTG 59.934 52.381 0.00 0.00 0.00 3.02
1276 1336 3.010584 AGAGCCTCCTCATAAGCCAAAAA 59.989 43.478 0.00 0.00 40.68 1.94
1363 1423 4.022416 CAGAACTCTAGCAGTGAGAACAGT 60.022 45.833 0.00 0.00 34.56 3.55
1380 1440 2.158696 AGAAGCAAACTGAGGCAGAACT 60.159 45.455 0.82 0.00 35.18 3.01
1402 1462 3.974642 ACAGTAGGAAGACCCAGAAACTT 59.025 43.478 0.00 0.00 37.41 2.66
1483 1543 2.872038 GCTCCTGACGAACCACAGAAAT 60.872 50.000 0.00 0.00 36.38 2.17
1644 1704 0.098376 GGAACTCGTAGACGCGATGT 59.902 55.000 15.93 0.00 40.29 3.06
1718 1778 2.103263 GCCTCCATGAGAGAAATACGGT 59.897 50.000 11.48 0.00 46.50 4.83
1740 1800 3.583806 CTCAGCACGAATCTCTGAAAGT 58.416 45.455 0.00 0.00 36.54 2.66
2498 2564 1.982958 GTCCAACTCCCAAAGACCCTA 59.017 52.381 0.00 0.00 0.00 3.53
3224 3290 4.920376 TCAAAAAGACGCTCAAAAGGAAG 58.080 39.130 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.