Multiple sequence alignment - TraesCS7D01G258600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G258600 chr7D 100.000 2798 0 0 1 2798 234349778 234346981 0.000000e+00 5168
1 TraesCS7D01G258600 chr7D 89.441 161 15 2 2415 2575 31996729 31996887 4.730000e-48 202
2 TraesCS7D01G258600 chr7B 87.619 2512 106 66 1 2430 206338739 206336351 0.000000e+00 2726
3 TraesCS7D01G258600 chr7A 89.145 1732 79 44 744 2430 247252615 247250948 0.000000e+00 2056
4 TraesCS7D01G258600 chr7A 87.638 453 40 11 17 466 247255654 247255215 1.920000e-141 512
5 TraesCS7D01G258600 chr7A 86.010 193 11 6 463 655 247252814 247252638 2.840000e-45 193
6 TraesCS7D01G258600 chr7A 84.737 190 10 6 2616 2798 247249966 247249789 3.710000e-39 172
7 TraesCS7D01G258600 chr4A 88.710 186 15 4 2427 2612 473937360 473937539 3.630000e-54 222
8 TraesCS7D01G258600 chr2D 87.755 196 9 5 2420 2603 537187920 537187728 6.070000e-52 215
9 TraesCS7D01G258600 chr2D 85.714 189 15 7 2415 2599 2568907 2569087 3.680000e-44 189
10 TraesCS7D01G258600 chr4D 92.517 147 11 0 2429 2575 449889384 449889238 7.850000e-51 211
11 TraesCS7D01G258600 chr1D 92.568 148 9 2 2429 2576 112352034 112352179 7.850000e-51 211
12 TraesCS7D01G258600 chr3D 91.447 152 11 2 2428 2579 298464987 298464838 1.020000e-49 207
13 TraesCS7D01G258600 chr3D 75.852 352 63 19 1452 1798 361776980 361777314 2.880000e-35 159
14 TraesCS7D01G258600 chr3D 85.000 160 20 4 1640 1798 531680013 531679857 2.880000e-35 159
15 TraesCS7D01G258600 chr1A 91.447 152 11 1 2428 2579 540673026 540673175 1.020000e-49 207
16 TraesCS7D01G258600 chrUn 90.968 155 11 3 2427 2579 108733788 108733941 3.650000e-49 206
17 TraesCS7D01G258600 chr3B 86.145 166 19 4 1635 1799 703296599 703296437 2.860000e-40 176
18 TraesCS7D01G258600 chr3B 76.504 349 57 19 1452 1798 471485594 471485919 1.720000e-37 167
19 TraesCS7D01G258600 chr3A 85.455 165 20 4 1635 1798 666222071 666221910 4.790000e-38 169
20 TraesCS7D01G258600 chr3A 85.333 150 22 0 1649 1798 482093330 482093479 3.730000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G258600 chr7D 234346981 234349778 2797 True 5168.00 5168 100.0000 1 2798 1 chr7D.!!$R1 2797
1 TraesCS7D01G258600 chr7B 206336351 206338739 2388 True 2726.00 2726 87.6190 1 2430 1 chr7B.!!$R1 2429
2 TraesCS7D01G258600 chr7A 247249789 247255654 5865 True 733.25 2056 86.8825 17 2798 4 chr7A.!!$R1 2781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 2937 0.035881 TCCTGAGAAACTGCCAGCTG 59.964 55.0 6.78 6.78 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 4670 0.466555 TTGTGTAACCTGCCACCACC 60.467 55.0 0.0 0.0 34.36 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 65 1.334869 GCTCAACAGTTGGTTCCTGTG 59.665 52.381 13.52 0.00 42.17 3.66
65 81 3.117284 AGTTGGTTCCTGTGGGTGTTTAT 60.117 43.478 0.00 0.00 0.00 1.40
71 87 3.904717 TCCTGTGGGTGTTTATGTGTTT 58.095 40.909 0.00 0.00 0.00 2.83
72 88 3.634448 TCCTGTGGGTGTTTATGTGTTTG 59.366 43.478 0.00 0.00 0.00 2.93
74 90 4.261572 CCTGTGGGTGTTTATGTGTTTGAG 60.262 45.833 0.00 0.00 0.00 3.02
75 91 3.067461 TGTGGGTGTTTATGTGTTTGAGC 59.933 43.478 0.00 0.00 0.00 4.26
76 92 3.067461 GTGGGTGTTTATGTGTTTGAGCA 59.933 43.478 0.00 0.00 0.00 4.26
77 93 3.317711 TGGGTGTTTATGTGTTTGAGCAG 59.682 43.478 0.00 0.00 0.00 4.24
78 94 3.568007 GGGTGTTTATGTGTTTGAGCAGA 59.432 43.478 0.00 0.00 0.00 4.26
79 95 4.218417 GGGTGTTTATGTGTTTGAGCAGAT 59.782 41.667 0.00 0.00 0.00 2.90
80 96 5.278957 GGGTGTTTATGTGTTTGAGCAGATT 60.279 40.000 0.00 0.00 0.00 2.40
81 97 6.215845 GGTGTTTATGTGTTTGAGCAGATTT 58.784 36.000 0.00 0.00 0.00 2.17
82 98 6.701400 GGTGTTTATGTGTTTGAGCAGATTTT 59.299 34.615 0.00 0.00 0.00 1.82
83 99 7.224557 GGTGTTTATGTGTTTGAGCAGATTTTT 59.775 33.333 0.00 0.00 0.00 1.94
113 129 1.672363 TCAGTGTTGAGCAGCTTTGTG 59.328 47.619 0.00 0.00 0.00 3.33
129 145 3.487626 TGTGTGCTGGTGGCTCCA 61.488 61.111 8.20 8.20 45.01 3.86
196 212 2.665000 CCAGTCTGCCACCGATGT 59.335 61.111 0.00 0.00 0.00 3.06
197 213 1.742880 CCAGTCTGCCACCGATGTG 60.743 63.158 0.00 0.00 42.39 3.21
201 217 2.124983 CTGCCACCGATGTGAGGG 60.125 66.667 0.00 0.00 45.76 4.30
202 218 2.606213 TGCCACCGATGTGAGGGA 60.606 61.111 0.00 0.00 45.76 4.20
253 269 2.802792 CATGCGTTGGCTGGGATG 59.197 61.111 0.00 0.00 40.82 3.51
318 334 4.218635 CAGTGTCGCTATATATGGTGGAGT 59.781 45.833 9.47 0.00 0.00 3.85
368 392 4.020928 ACCTTTTTGACCGTCCTTTGTTTT 60.021 37.500 0.00 0.00 0.00 2.43
388 412 1.191535 TCCACCCGATCGAAACAGAT 58.808 50.000 18.66 0.00 0.00 2.90
402 426 0.109086 ACAGATTGGCGAGTCGTGAG 60.109 55.000 15.08 0.53 0.00 3.51
406 430 1.132643 GATTGGCGAGTCGTGAGTAGT 59.867 52.381 15.08 0.00 0.00 2.73
410 434 0.521659 GCGAGTCGTGAGTAGTGAGC 60.522 60.000 15.08 0.00 0.00 4.26
411 435 0.097325 CGAGTCGTGAGTAGTGAGCC 59.903 60.000 3.82 0.00 0.00 4.70
413 437 1.131504 GAGTCGTGAGTAGTGAGCCAG 59.868 57.143 0.00 0.00 0.00 4.85
415 439 1.746220 GTCGTGAGTAGTGAGCCAGAT 59.254 52.381 0.00 0.00 0.00 2.90
416 440 2.164624 GTCGTGAGTAGTGAGCCAGATT 59.835 50.000 0.00 0.00 0.00 2.40
417 441 2.423892 TCGTGAGTAGTGAGCCAGATTC 59.576 50.000 0.00 0.00 0.00 2.52
418 442 2.792890 CGTGAGTAGTGAGCCAGATTCG 60.793 54.545 0.00 0.00 0.00 3.34
419 443 2.423892 GTGAGTAGTGAGCCAGATTCGA 59.576 50.000 0.00 0.00 0.00 3.71
420 444 2.685388 TGAGTAGTGAGCCAGATTCGAG 59.315 50.000 0.00 0.00 0.00 4.04
421 445 1.407258 AGTAGTGAGCCAGATTCGAGC 59.593 52.381 0.00 0.00 0.00 5.03
422 446 0.747255 TAGTGAGCCAGATTCGAGCC 59.253 55.000 0.00 0.00 0.00 4.70
425 449 1.886777 GAGCCAGATTCGAGCCAGC 60.887 63.158 0.00 0.00 0.00 4.85
503 2931 1.742268 GCCAGATTCCTGAGAAACTGC 59.258 52.381 7.37 1.47 46.30 4.40
504 2932 2.363683 CCAGATTCCTGAGAAACTGCC 58.636 52.381 7.37 0.00 46.30 4.85
505 2933 2.290514 CCAGATTCCTGAGAAACTGCCA 60.291 50.000 7.37 0.00 46.30 4.92
506 2934 3.008330 CAGATTCCTGAGAAACTGCCAG 58.992 50.000 0.00 0.00 43.34 4.85
507 2935 1.742268 GATTCCTGAGAAACTGCCAGC 59.258 52.381 0.00 0.00 35.09 4.85
508 2936 0.767375 TTCCTGAGAAACTGCCAGCT 59.233 50.000 0.00 0.00 0.00 4.24
509 2937 0.035881 TCCTGAGAAACTGCCAGCTG 59.964 55.000 6.78 6.78 0.00 4.24
510 2938 0.959372 CCTGAGAAACTGCCAGCTGG 60.959 60.000 29.34 29.34 38.53 4.85
511 2939 0.035881 CTGAGAAACTGCCAGCTGGA 59.964 55.000 37.21 19.62 37.39 3.86
512 2940 0.250467 TGAGAAACTGCCAGCTGGAC 60.250 55.000 37.21 25.98 37.39 4.02
514 2942 1.228245 GAAACTGCCAGCTGGACCA 60.228 57.895 37.21 23.52 37.39 4.02
515 2943 1.228367 AAACTGCCAGCTGGACCAG 60.228 57.895 37.21 32.23 37.39 4.00
516 2944 1.708993 AAACTGCCAGCTGGACCAGA 61.709 55.000 34.09 15.23 37.39 3.86
517 2945 1.495579 AACTGCCAGCTGGACCAGAT 61.496 55.000 34.09 24.96 37.39 2.90
518 2946 1.153208 CTGCCAGCTGGACCAGATC 60.153 63.158 37.21 16.86 37.39 2.75
519 2947 1.907222 CTGCCAGCTGGACCAGATCA 61.907 60.000 37.21 20.57 37.39 2.92
520 2948 1.451028 GCCAGCTGGACCAGATCAC 60.451 63.158 37.21 11.32 37.39 3.06
521 2949 1.908340 GCCAGCTGGACCAGATCACT 61.908 60.000 37.21 9.59 37.39 3.41
522 2950 0.177604 CCAGCTGGACCAGATCACTC 59.822 60.000 29.88 6.05 37.39 3.51
523 2951 0.900421 CAGCTGGACCAGATCACTCA 59.100 55.000 26.25 0.00 32.44 3.41
556 2984 3.509575 CCAATTCTCGTCAAAATCCCCAA 59.490 43.478 0.00 0.00 0.00 4.12
559 2987 2.500229 TCTCGTCAAAATCCCCAACAC 58.500 47.619 0.00 0.00 0.00 3.32
621 3072 2.038813 TGCCTCCGACAGATCCCA 59.961 61.111 0.00 0.00 0.00 4.37
663 3118 3.274586 CGCACTGCACTGCACTGT 61.275 61.111 16.94 0.00 36.94 3.55
665 3120 1.293963 CGCACTGCACTGCACTGTAT 61.294 55.000 16.94 0.00 36.94 2.29
689 3144 1.948145 AGTCATCATACGTCGAGTCCC 59.052 52.381 0.00 0.00 0.00 4.46
710 3165 4.179599 CCCCCTCCCCTCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
711 3166 4.179599 CCCCTCCCCTCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
712 3167 4.179599 CCCTCCCCTCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
713 3168 3.039526 CCTCCCCTCTCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
807 3282 2.348666 CCGAAATCGTCAAGATCCACAC 59.651 50.000 1.79 0.00 38.98 3.82
808 3283 2.348666 CGAAATCGTCAAGATCCACACC 59.651 50.000 0.00 0.00 38.98 4.16
809 3284 3.334691 GAAATCGTCAAGATCCACACCA 58.665 45.455 0.00 0.00 38.98 4.17
810 3285 2.386661 ATCGTCAAGATCCACACCAC 57.613 50.000 0.00 0.00 33.45 4.16
811 3286 1.044611 TCGTCAAGATCCACACCACA 58.955 50.000 0.00 0.00 0.00 4.17
812 3287 1.000843 TCGTCAAGATCCACACCACAG 59.999 52.381 0.00 0.00 0.00 3.66
813 3288 1.160137 GTCAAGATCCACACCACAGC 58.840 55.000 0.00 0.00 0.00 4.40
816 3291 0.603707 AAGATCCACACCACAGCACG 60.604 55.000 0.00 0.00 0.00 5.34
878 3362 0.391927 CGCCCTTCATTAACCCGACA 60.392 55.000 0.00 0.00 0.00 4.35
932 3416 2.301738 CGCTTCCCTTCCCTTCCCT 61.302 63.158 0.00 0.00 0.00 4.20
1392 3890 2.348888 CCCCGCGTTGACTAGACCT 61.349 63.158 4.92 0.00 0.00 3.85
1401 3899 3.372554 GACTAGACCTGTGGCCGCC 62.373 68.421 15.15 1.04 0.00 6.13
1620 4127 2.486042 GAGGACGACGTGGAGCTC 59.514 66.667 4.58 4.71 0.00 4.09
1627 4134 4.361971 ACGTGGAGCTCCCGGAGA 62.362 66.667 32.94 15.33 37.93 3.71
1809 4316 4.717629 TTCTGAGACCACGCCGCG 62.718 66.667 12.14 12.14 0.00 6.46
1940 4448 3.686120 GCCCATATCTGTAAAACCCGGAA 60.686 47.826 0.73 0.00 0.00 4.30
1988 4496 3.113322 TCGAAATCACCATCGTCGAATC 58.887 45.455 0.00 0.00 37.75 2.52
1989 4497 2.218759 CGAAATCACCATCGTCGAATCC 59.781 50.000 0.00 0.00 34.48 3.01
1990 4498 2.240493 AATCACCATCGTCGAATCCC 57.760 50.000 0.00 0.00 0.00 3.85
1991 4499 1.414158 ATCACCATCGTCGAATCCCT 58.586 50.000 0.00 0.00 0.00 4.20
1992 4500 2.061509 TCACCATCGTCGAATCCCTA 57.938 50.000 0.00 0.00 0.00 3.53
2019 4527 1.630369 ACAGCTTGCCAGAGACCAATA 59.370 47.619 0.00 0.00 0.00 1.90
2020 4528 2.240667 ACAGCTTGCCAGAGACCAATAT 59.759 45.455 0.00 0.00 0.00 1.28
2021 4529 2.877168 CAGCTTGCCAGAGACCAATATC 59.123 50.000 0.00 0.00 0.00 1.63
2022 4530 1.869767 GCTTGCCAGAGACCAATATCG 59.130 52.381 0.00 0.00 0.00 2.92
2023 4531 1.869767 CTTGCCAGAGACCAATATCGC 59.130 52.381 0.00 0.00 0.00 4.58
2024 4532 1.123077 TGCCAGAGACCAATATCGCT 58.877 50.000 0.00 0.00 0.00 4.93
2025 4533 1.486310 TGCCAGAGACCAATATCGCTT 59.514 47.619 0.00 0.00 0.00 4.68
2026 4534 2.092968 TGCCAGAGACCAATATCGCTTT 60.093 45.455 0.00 0.00 0.00 3.51
2027 4535 2.945668 GCCAGAGACCAATATCGCTTTT 59.054 45.455 0.00 0.00 0.00 2.27
2028 4536 3.378427 GCCAGAGACCAATATCGCTTTTT 59.622 43.478 0.00 0.00 0.00 1.94
2057 4565 6.037500 TGCGAAATCAATATCACTTCTTCTGG 59.962 38.462 0.00 0.00 0.00 3.86
2063 4571 5.525012 TCAATATCACTTCTTCTGGATTGCG 59.475 40.000 0.00 0.00 0.00 4.85
2111 4619 4.452795 TCAGTTCGCAATTCCGATTTGTTA 59.547 37.500 0.00 0.00 37.06 2.41
2155 4669 4.351054 GGTGGGTGCCTGGGTCTG 62.351 72.222 0.00 0.00 0.00 3.51
2156 4670 4.351054 GTGGGTGCCTGGGTCTGG 62.351 72.222 0.00 0.00 0.00 3.86
2171 4685 1.303317 CTGGGTGGTGGCAGGTTAC 60.303 63.158 0.00 0.00 0.00 2.50
2230 4747 4.161565 TCACTACCGGAATTACATTCTGCT 59.838 41.667 9.46 0.00 42.89 4.24
2310 4833 1.622811 GATCTCGAGATGCCCTCCATT 59.377 52.381 31.88 4.99 38.71 3.16
2325 4848 2.722094 TCCATTGGGAGTTCCGATTTG 58.278 47.619 2.09 0.00 38.64 2.32
2327 4850 3.264706 TCCATTGGGAGTTCCGATTTGTA 59.735 43.478 2.09 0.00 38.64 2.41
2328 4851 4.080015 TCCATTGGGAGTTCCGATTTGTAT 60.080 41.667 2.09 0.00 38.64 2.29
2329 4852 4.644685 CCATTGGGAGTTCCGATTTGTATT 59.355 41.667 0.00 0.00 37.54 1.89
2330 4853 5.825679 CCATTGGGAGTTCCGATTTGTATTA 59.174 40.000 0.00 0.00 37.54 0.98
2331 4854 6.320164 CCATTGGGAGTTCCGATTTGTATTAA 59.680 38.462 0.00 0.00 37.54 1.40
2332 4855 7.014230 CCATTGGGAGTTCCGATTTGTATTAAT 59.986 37.037 0.00 0.00 37.54 1.40
2333 4856 7.948034 TTGGGAGTTCCGATTTGTATTAATT 57.052 32.000 0.00 0.00 38.76 1.40
2335 4858 8.356000 TGGGAGTTCCGATTTGTATTAATTTT 57.644 30.769 0.00 0.00 38.76 1.82
2336 4859 9.463902 TGGGAGTTCCGATTTGTATTAATTTTA 57.536 29.630 0.00 0.00 38.76 1.52
2351 4891 6.592798 TTAATTTTATTGTACTCCGCTCCG 57.407 37.500 0.00 0.00 0.00 4.63
2430 4970 3.668757 CGTGGAGCACATTTCATGTTCAG 60.669 47.826 0.00 0.00 42.70 3.02
2431 4971 3.254166 GTGGAGCACATTTCATGTTCAGT 59.746 43.478 0.00 0.00 42.70 3.41
2434 4974 4.682860 GGAGCACATTTCATGTTCAGTTTG 59.317 41.667 0.00 0.00 42.70 2.93
2435 4975 5.507817 GGAGCACATTTCATGTTCAGTTTGA 60.508 40.000 0.00 0.00 42.70 2.69
2437 4977 5.068198 AGCACATTTCATGTTCAGTTTGACT 59.932 36.000 0.00 0.00 42.70 3.41
2440 4980 7.596248 GCACATTTCATGTTCAGTTTGACTAAT 59.404 33.333 0.00 0.00 42.70 1.73
2441 4981 9.467258 CACATTTCATGTTCAGTTTGACTAATT 57.533 29.630 0.00 0.00 42.70 1.40
2442 4982 9.683069 ACATTTCATGTTCAGTTTGACTAATTC 57.317 29.630 0.00 0.00 41.63 2.17
2444 4984 9.683069 ATTTCATGTTCAGTTTGACTAATTCAC 57.317 29.630 0.00 0.00 32.26 3.18
2445 4985 7.800155 TCATGTTCAGTTTGACTAATTCACA 57.200 32.000 0.00 0.00 32.26 3.58
2446 4986 8.394971 TCATGTTCAGTTTGACTAATTCACAT 57.605 30.769 0.00 0.00 32.26 3.21
2447 4987 8.506437 TCATGTTCAGTTTGACTAATTCACATC 58.494 33.333 0.00 0.00 32.26 3.06
2450 4990 9.208022 TGTTCAGTTTGACTAATTCACATCTAG 57.792 33.333 0.00 0.00 32.26 2.43
2451 4991 9.424319 GTTCAGTTTGACTAATTCACATCTAGA 57.576 33.333 0.00 0.00 32.26 2.43
2481 5021 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
2483 5460 3.652055 AGGATGTCACATCTAAGCTCCT 58.348 45.455 17.46 2.78 0.00 3.69
2485 5462 5.401750 AGGATGTCACATCTAAGCTCCTAT 58.598 41.667 17.46 0.00 30.26 2.57
2489 5466 8.317679 GGATGTCACATCTAAGCTCCTATAAAT 58.682 37.037 17.46 0.00 0.00 1.40
2501 5478 7.856145 AGCTCCTATAAATACATAATGCAGC 57.144 36.000 0.00 0.00 0.00 5.25
2507 5484 9.616634 CCTATAAATACATAATGCAGCAACAAG 57.383 33.333 0.00 0.00 0.00 3.16
2511 5488 7.816945 AATACATAATGCAGCAACAAGAAAC 57.183 32.000 0.00 0.00 0.00 2.78
2515 5492 6.538021 ACATAATGCAGCAACAAGAAACAAAA 59.462 30.769 0.00 0.00 0.00 2.44
2554 5877 5.757850 AAAAGATCACAAACAGAGTGGAC 57.242 39.130 0.00 0.00 37.58 4.02
2555 5878 4.422073 AAGATCACAAACAGAGTGGACA 57.578 40.909 0.00 0.00 37.58 4.02
2556 5879 4.630644 AGATCACAAACAGAGTGGACAT 57.369 40.909 0.00 0.00 37.58 3.06
2557 5880 4.573900 AGATCACAAACAGAGTGGACATC 58.426 43.478 0.00 0.00 37.58 3.06
2559 5882 3.732212 TCACAAACAGAGTGGACATCAG 58.268 45.455 0.00 0.00 37.58 2.90
2560 5883 2.225019 CACAAACAGAGTGGACATCAGC 59.775 50.000 0.00 0.00 33.43 4.26
2562 5885 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
2563 5886 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
2566 5889 4.029520 ACAGAGTGGACATCAGCTTAGAT 58.970 43.478 0.00 0.00 0.00 1.98
2568 5891 5.837979 ACAGAGTGGACATCAGCTTAGATAT 59.162 40.000 0.00 0.00 0.00 1.63
2570 5893 6.015603 CAGAGTGGACATCAGCTTAGATATGA 60.016 42.308 0.00 0.00 0.00 2.15
2571 5894 6.015519 AGAGTGGACATCAGCTTAGATATGAC 60.016 42.308 0.00 0.00 0.00 3.06
2573 5896 6.269538 AGTGGACATCAGCTTAGATATGACAT 59.730 38.462 0.00 0.00 0.00 3.06
2575 5898 7.758980 GTGGACATCAGCTTAGATATGACATAG 59.241 40.741 0.98 0.00 0.00 2.23
2576 5899 7.452813 TGGACATCAGCTTAGATATGACATAGT 59.547 37.037 0.98 0.00 0.00 2.12
2577 5900 8.310382 GGACATCAGCTTAGATATGACATAGTT 58.690 37.037 0.98 0.00 0.00 2.24
2588 5911 8.948401 AGATATGACATAGTTAGATGTGTCCT 57.052 34.615 0.98 0.00 40.18 3.85
2592 5915 7.569639 TGACATAGTTAGATGTGTCCTAGAC 57.430 40.000 0.00 0.00 40.18 2.59
2593 5916 7.116736 TGACATAGTTAGATGTGTCCTAGACA 58.883 38.462 0.00 0.00 40.18 3.41
2596 5919 7.283580 ACATAGTTAGATGTGTCCTAGACAGAC 59.716 40.741 0.00 0.00 43.57 3.51
2601 5924 2.972348 TGTGTCCTAGACAGACCCTTT 58.028 47.619 0.00 0.00 43.57 3.11
2603 5926 2.897969 GTGTCCTAGACAGACCCTTTCA 59.102 50.000 0.00 0.00 43.57 2.69
2605 5928 4.710375 GTGTCCTAGACAGACCCTTTCATA 59.290 45.833 0.00 0.00 43.57 2.15
2606 5929 5.364157 GTGTCCTAGACAGACCCTTTCATAT 59.636 44.000 0.00 0.00 43.57 1.78
2608 5931 6.098409 TGTCCTAGACAGACCCTTTCATATTC 59.902 42.308 0.00 0.00 37.67 1.75
2609 5932 6.098409 GTCCTAGACAGACCCTTTCATATTCA 59.902 42.308 0.00 0.00 32.09 2.57
2611 5934 8.010697 TCCTAGACAGACCCTTTCATATTCATA 58.989 37.037 0.00 0.00 0.00 2.15
2612 5935 8.820831 CCTAGACAGACCCTTTCATATTCATAT 58.179 37.037 0.00 0.00 0.00 1.78
2646 5982 3.129109 GTGATGCACGATGTCATGAGAT 58.871 45.455 4.78 4.78 0.00 2.75
2647 5983 3.059800 GTGATGCACGATGTCATGAGATG 60.060 47.826 10.56 5.53 0.00 2.90
2648 5984 2.678471 TGCACGATGTCATGAGATGT 57.322 45.000 10.56 6.14 0.00 3.06
2649 5985 2.543641 TGCACGATGTCATGAGATGTC 58.456 47.619 10.56 0.00 0.00 3.06
2650 5986 2.094078 TGCACGATGTCATGAGATGTCA 60.094 45.455 10.56 0.00 37.02 3.58
2651 5987 2.538861 GCACGATGTCATGAGATGTCAG 59.461 50.000 10.56 1.87 35.66 3.51
2652 5988 3.121544 CACGATGTCATGAGATGTCAGG 58.878 50.000 10.56 0.00 35.66 3.86
2653 5989 2.133553 CGATGTCATGAGATGTCAGGC 58.866 52.381 10.56 0.00 35.66 4.85
2708 6048 3.564027 GCCTCAATTCGGTCCGCG 61.564 66.667 6.34 0.00 0.00 6.46
2716 6056 0.313043 ATTCGGTCCGCGATAATCGT 59.687 50.000 8.23 0.00 42.81 3.73
2730 6070 5.745294 GCGATAATCGTACAAAACTGTCCTA 59.255 40.000 0.00 0.00 42.81 2.94
2763 6105 9.852091 AAAGAATTTGTACTAGTACTTACTCGG 57.148 33.333 28.56 0.00 36.60 4.63
2772 6114 4.030134 AGTACTTACTCGGAATTGAGCG 57.970 45.455 0.00 0.00 39.68 5.03
2783 6125 3.243434 CGGAATTGAGCGGTAGATGTAGT 60.243 47.826 0.00 0.00 0.00 2.73
2785 6127 5.462405 GGAATTGAGCGGTAGATGTAGTAG 58.538 45.833 0.00 0.00 0.00 2.57
2788 6130 3.474600 TGAGCGGTAGATGTAGTAGGAC 58.525 50.000 0.00 0.00 0.00 3.85
2789 6131 2.479656 GAGCGGTAGATGTAGTAGGACG 59.520 54.545 0.00 0.00 0.00 4.79
2790 6132 2.103771 AGCGGTAGATGTAGTAGGACGA 59.896 50.000 0.00 0.00 0.00 4.20
2791 6133 2.479656 GCGGTAGATGTAGTAGGACGAG 59.520 54.545 0.00 0.00 0.00 4.18
2792 6134 2.479656 CGGTAGATGTAGTAGGACGAGC 59.520 54.545 0.00 0.00 0.00 5.03
2793 6135 2.479656 GGTAGATGTAGTAGGACGAGCG 59.520 54.545 0.00 0.00 0.00 5.03
2794 6136 2.328819 AGATGTAGTAGGACGAGCGT 57.671 50.000 0.00 0.00 0.00 5.07
2795 6137 2.641305 AGATGTAGTAGGACGAGCGTT 58.359 47.619 0.00 0.00 0.00 4.84
2796 6138 2.613133 AGATGTAGTAGGACGAGCGTTC 59.387 50.000 0.00 0.00 0.00 3.95
2797 6139 1.812235 TGTAGTAGGACGAGCGTTCA 58.188 50.000 3.93 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 34 0.601046 CTGTTGAGCACCTCAGCGAA 60.601 55.000 4.95 0.00 43.08 4.70
26 35 1.005748 CTGTTGAGCACCTCAGCGA 60.006 57.895 4.95 0.00 43.08 4.93
36 45 1.334869 CACAGGAACCAACTGTTGAGC 59.665 52.381 21.49 9.81 46.38 4.26
56 65 3.568007 TCTGCTCAAACACATAAACACCC 59.432 43.478 0.00 0.00 0.00 4.61
93 109 1.672363 CACAAAGCTGCTCAACACTGA 59.328 47.619 1.00 0.00 0.00 3.41
129 145 2.888447 GCAGCCCACACTCTCCACT 61.888 63.158 0.00 0.00 0.00 4.00
132 148 1.073897 AAAGCAGCCCACACTCTCC 59.926 57.895 0.00 0.00 0.00 3.71
196 212 0.631998 ATCTCCCTCCCTCTCCCTCA 60.632 60.000 0.00 0.00 0.00 3.86
197 213 0.565674 AATCTCCCTCCCTCTCCCTC 59.434 60.000 0.00 0.00 0.00 4.30
201 217 2.182516 TTCCAATCTCCCTCCCTCTC 57.817 55.000 0.00 0.00 0.00 3.20
202 218 2.416638 CATTCCAATCTCCCTCCCTCT 58.583 52.381 0.00 0.00 0.00 3.69
240 256 1.825191 CCATCCATCCCAGCCAACG 60.825 63.158 0.00 0.00 0.00 4.10
253 269 1.468914 GAAAGTTCCAAGTCGCCATCC 59.531 52.381 0.00 0.00 0.00 3.51
331 353 7.413548 CGGTCAAAAAGGTTAAAGCACATTTTT 60.414 33.333 4.71 4.71 46.31 1.94
348 372 4.930405 GGAAAAACAAAGGACGGTCAAAAA 59.070 37.500 10.76 0.00 0.00 1.94
368 392 0.970640 TCTGTTTCGATCGGGTGGAA 59.029 50.000 16.41 0.00 0.00 3.53
388 412 0.240145 CACTACTCACGACTCGCCAA 59.760 55.000 0.00 0.00 0.00 4.52
402 426 1.537135 GGCTCGAATCTGGCTCACTAC 60.537 57.143 0.00 0.00 0.00 2.73
406 430 1.519246 CTGGCTCGAATCTGGCTCA 59.481 57.895 0.00 0.00 0.00 4.26
410 434 2.587194 CGGCTGGCTCGAATCTGG 60.587 66.667 0.00 0.00 0.00 3.86
411 435 2.587194 CCGGCTGGCTCGAATCTG 60.587 66.667 0.00 0.00 0.00 2.90
413 437 2.586357 GACCGGCTGGCTCGAATC 60.586 66.667 12.89 0.00 39.70 2.52
503 2931 0.177604 GAGTGATCTGGTCCAGCTGG 59.822 60.000 27.87 27.87 0.00 4.85
504 2932 0.900421 TGAGTGATCTGGTCCAGCTG 59.100 55.000 14.64 6.78 0.00 4.24
505 2933 1.761784 GATGAGTGATCTGGTCCAGCT 59.238 52.381 14.64 4.09 0.00 4.24
506 2934 1.483827 TGATGAGTGATCTGGTCCAGC 59.516 52.381 14.64 1.61 31.55 4.85
507 2935 3.900966 TTGATGAGTGATCTGGTCCAG 57.099 47.619 13.21 13.21 31.55 3.86
508 2936 4.681512 CGATTTGATGAGTGATCTGGTCCA 60.682 45.833 0.00 0.00 31.55 4.02
509 2937 3.806521 CGATTTGATGAGTGATCTGGTCC 59.193 47.826 0.00 0.00 31.55 4.46
510 2938 4.686972 TCGATTTGATGAGTGATCTGGTC 58.313 43.478 0.00 0.00 31.55 4.02
511 2939 4.743057 TCGATTTGATGAGTGATCTGGT 57.257 40.909 0.00 0.00 31.55 4.00
512 2940 4.272018 GGTTCGATTTGATGAGTGATCTGG 59.728 45.833 0.00 0.00 31.55 3.86
514 2942 5.089970 TGGTTCGATTTGATGAGTGATCT 57.910 39.130 0.00 0.00 31.55 2.75
515 2943 5.801350 TTGGTTCGATTTGATGAGTGATC 57.199 39.130 0.00 0.00 0.00 2.92
516 2944 6.600822 AGAATTGGTTCGATTTGATGAGTGAT 59.399 34.615 0.00 0.00 39.38 3.06
517 2945 5.939883 AGAATTGGTTCGATTTGATGAGTGA 59.060 36.000 0.00 0.00 39.38 3.41
518 2946 6.187125 AGAATTGGTTCGATTTGATGAGTG 57.813 37.500 0.00 0.00 39.38 3.51
519 2947 5.063944 CGAGAATTGGTTCGATTTGATGAGT 59.936 40.000 0.00 0.00 39.38 3.41
520 2948 5.063944 ACGAGAATTGGTTCGATTTGATGAG 59.936 40.000 9.72 0.00 39.93 2.90
521 2949 4.935205 ACGAGAATTGGTTCGATTTGATGA 59.065 37.500 9.72 0.00 39.93 2.92
522 2950 5.163864 TGACGAGAATTGGTTCGATTTGATG 60.164 40.000 9.72 0.00 39.93 3.07
523 2951 4.935205 TGACGAGAATTGGTTCGATTTGAT 59.065 37.500 9.72 0.00 39.93 2.57
606 3038 2.808315 CGTGGGATCTGTCGGAGG 59.192 66.667 0.00 0.00 0.00 4.30
663 3118 4.036380 ACTCGACGTATGATGACTGCAATA 59.964 41.667 0.00 0.00 0.00 1.90
665 3120 2.163613 ACTCGACGTATGATGACTGCAA 59.836 45.455 0.00 0.00 0.00 4.08
702 3157 4.548513 CGGGGGAGGGGAGGAGAG 62.549 77.778 0.00 0.00 0.00 3.20
708 3163 2.868790 AATAAAGGCGGGGGAGGGGA 62.869 60.000 0.00 0.00 0.00 4.81
709 3164 1.944896 AAATAAAGGCGGGGGAGGGG 61.945 60.000 0.00 0.00 0.00 4.79
710 3165 0.848053 TAAATAAAGGCGGGGGAGGG 59.152 55.000 0.00 0.00 0.00 4.30
711 3166 1.493446 AGTAAATAAAGGCGGGGGAGG 59.507 52.381 0.00 0.00 0.00 4.30
712 3167 2.486727 GGAGTAAATAAAGGCGGGGGAG 60.487 54.545 0.00 0.00 0.00 4.30
713 3168 1.491754 GGAGTAAATAAAGGCGGGGGA 59.508 52.381 0.00 0.00 0.00 4.81
932 3416 0.105913 ACAAGGCGGGGAAAGGAAAA 60.106 50.000 0.00 0.00 0.00 2.29
1533 4034 2.281276 TGCTCCTGCTGCACTGTG 60.281 61.111 2.76 2.76 40.48 3.66
1536 4037 2.926779 TCCTGCTCCTGCTGCACT 60.927 61.111 0.00 0.00 40.48 4.40
1814 4321 1.127343 GAGAAGAGGTCAGATGGGGG 58.873 60.000 0.00 0.00 0.00 5.40
1961 4469 2.159043 ACGATGGTGATTTCGAGCTGAT 60.159 45.455 0.00 0.00 38.67 2.90
1988 4496 2.084546 GGCAAGCTGTAACAACTAGGG 58.915 52.381 0.00 0.00 0.00 3.53
1989 4497 2.744202 CTGGCAAGCTGTAACAACTAGG 59.256 50.000 0.00 0.00 0.00 3.02
1990 4498 3.664107 TCTGGCAAGCTGTAACAACTAG 58.336 45.455 0.00 0.00 0.00 2.57
1991 4499 3.323691 TCTCTGGCAAGCTGTAACAACTA 59.676 43.478 0.00 0.00 0.00 2.24
1992 4500 2.104792 TCTCTGGCAAGCTGTAACAACT 59.895 45.455 0.00 0.00 0.00 3.16
2028 4536 9.128107 GAAGAAGTGATATTGATTTCGCAAAAA 57.872 29.630 0.00 0.00 0.00 1.94
2029 4537 8.514594 AGAAGAAGTGATATTGATTTCGCAAAA 58.485 29.630 0.00 0.00 0.00 2.44
2030 4538 7.964559 CAGAAGAAGTGATATTGATTTCGCAAA 59.035 33.333 0.00 0.00 0.00 3.68
2031 4539 7.414429 CCAGAAGAAGTGATATTGATTTCGCAA 60.414 37.037 0.00 0.00 0.00 4.85
2032 4540 6.037500 CCAGAAGAAGTGATATTGATTTCGCA 59.962 38.462 0.00 0.00 0.00 5.10
2033 4541 6.258727 TCCAGAAGAAGTGATATTGATTTCGC 59.741 38.462 0.00 0.00 0.00 4.70
2034 4542 7.776933 TCCAGAAGAAGTGATATTGATTTCG 57.223 36.000 0.00 0.00 0.00 3.46
2035 4543 9.947669 CAATCCAGAAGAAGTGATATTGATTTC 57.052 33.333 0.00 0.00 0.00 2.17
2036 4544 8.411683 GCAATCCAGAAGAAGTGATATTGATTT 58.588 33.333 0.00 0.00 0.00 2.17
2037 4545 7.255035 CGCAATCCAGAAGAAGTGATATTGATT 60.255 37.037 0.00 0.00 0.00 2.57
2038 4546 6.204301 CGCAATCCAGAAGAAGTGATATTGAT 59.796 38.462 0.00 0.00 0.00 2.57
2039 4547 5.525012 CGCAATCCAGAAGAAGTGATATTGA 59.475 40.000 0.00 0.00 0.00 2.57
2040 4548 5.745514 CGCAATCCAGAAGAAGTGATATTG 58.254 41.667 0.00 0.00 0.00 1.90
2041 4549 4.274459 GCGCAATCCAGAAGAAGTGATATT 59.726 41.667 0.30 0.00 0.00 1.28
2042 4550 3.812053 GCGCAATCCAGAAGAAGTGATAT 59.188 43.478 0.30 0.00 0.00 1.63
2043 4551 3.198068 GCGCAATCCAGAAGAAGTGATA 58.802 45.455 0.30 0.00 0.00 2.15
2057 4565 6.399986 GGAAACAAAAGTAGAAATGCGCAATC 60.400 38.462 17.11 16.62 0.00 2.67
2063 4571 8.593492 AAATGAGGAAACAAAAGTAGAAATGC 57.407 30.769 0.00 0.00 0.00 3.56
2111 4619 2.105134 TGATTGGTTACCAACACGGAGT 59.895 45.455 19.93 0.92 46.95 3.85
2153 4667 1.303317 GTAACCTGCCACCACCCAG 60.303 63.158 0.00 0.00 0.00 4.45
2154 4668 2.079288 TGTAACCTGCCACCACCCA 61.079 57.895 0.00 0.00 0.00 4.51
2155 4669 1.602605 GTGTAACCTGCCACCACCC 60.603 63.158 0.00 0.00 0.00 4.61
2156 4670 0.466555 TTGTGTAACCTGCCACCACC 60.467 55.000 0.00 0.00 34.36 4.61
2157 4671 0.951558 CTTGTGTAACCTGCCACCAC 59.048 55.000 0.00 0.00 34.36 4.16
2158 4672 0.840617 TCTTGTGTAACCTGCCACCA 59.159 50.000 0.00 0.00 34.36 4.17
2171 4685 5.334105 CGAGTCAAACCCAAGTAATCTTGTG 60.334 44.000 7.11 0.00 46.70 3.33
2223 4740 9.947433 CTGGTAGTACTACTAGTATAGCAGAAT 57.053 37.037 28.99 2.83 44.39 2.40
2230 4747 8.038862 ACAAGGCTGGTAGTACTACTAGTATA 57.961 38.462 33.81 15.02 43.75 1.47
2279 4802 2.379972 TCTCGAGATCTCCAAACTCCC 58.620 52.381 17.13 0.00 0.00 4.30
2280 4803 3.798548 GCATCTCGAGATCTCCAAACTCC 60.799 52.174 25.00 0.73 31.21 3.85
2281 4804 3.380142 GCATCTCGAGATCTCCAAACTC 58.620 50.000 25.00 2.88 31.21 3.01
2282 4805 2.102252 GGCATCTCGAGATCTCCAAACT 59.898 50.000 25.00 0.00 31.21 2.66
2310 4833 7.948034 AAATTAATACAAATCGGAACTCCCA 57.052 32.000 0.00 0.00 34.14 4.37
2324 4847 9.048446 GGAGCGGAGTACAATAAAATTAATACA 57.952 33.333 0.00 0.00 0.00 2.29
2325 4848 8.219105 CGGAGCGGAGTACAATAAAATTAATAC 58.781 37.037 0.00 0.00 0.00 1.89
2327 4850 7.186021 CGGAGCGGAGTACAATAAAATTAAT 57.814 36.000 0.00 0.00 0.00 1.40
2328 4851 6.592798 CGGAGCGGAGTACAATAAAATTAA 57.407 37.500 0.00 0.00 0.00 1.40
2351 4891 3.376218 CTGCATAGTGGAGTGGAGC 57.624 57.895 0.00 0.00 30.66 4.70
2425 4965 9.424319 TCTAGATGTGAATTAGTCAAACTGAAC 57.576 33.333 0.00 0.00 38.23 3.18
2456 4996 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
2457 4997 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
2458 4998 6.156949 AGGAGCTTAGATGTGACATCCTTAAA 59.843 38.462 21.05 10.18 31.97 1.52
2459 4999 5.663106 AGGAGCTTAGATGTGACATCCTTAA 59.337 40.000 21.05 13.11 31.97 1.85
2460 5000 5.211973 AGGAGCTTAGATGTGACATCCTTA 58.788 41.667 21.05 6.22 31.97 2.69
2461 5001 4.036518 AGGAGCTTAGATGTGACATCCTT 58.963 43.478 21.05 7.22 31.97 3.36
2462 5002 3.652055 AGGAGCTTAGATGTGACATCCT 58.348 45.455 21.05 11.37 0.00 3.24
2463 5003 5.736951 ATAGGAGCTTAGATGTGACATCC 57.263 43.478 21.05 6.49 0.00 3.51
2476 5016 7.884877 TGCTGCATTATGTATTTATAGGAGCTT 59.115 33.333 0.00 0.00 0.00 3.74
2477 5017 7.397221 TGCTGCATTATGTATTTATAGGAGCT 58.603 34.615 0.00 0.00 0.00 4.09
2479 5019 9.002600 TGTTGCTGCATTATGTATTTATAGGAG 57.997 33.333 1.84 0.00 0.00 3.69
2481 5021 9.616634 CTTGTTGCTGCATTATGTATTTATAGG 57.383 33.333 1.84 0.00 0.00 2.57
2485 5462 9.352784 GTTTCTTGTTGCTGCATTATGTATTTA 57.647 29.630 1.84 0.00 0.00 1.40
2489 5466 6.324561 TGTTTCTTGTTGCTGCATTATGTA 57.675 33.333 1.84 0.00 0.00 2.29
2490 5467 5.199024 TGTTTCTTGTTGCTGCATTATGT 57.801 34.783 1.84 0.00 0.00 2.29
2491 5468 6.528014 TTTGTTTCTTGTTGCTGCATTATG 57.472 33.333 1.84 0.00 0.00 1.90
2494 5471 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
2534 5857 4.422073 TGTCCACTCTGTTTGTGATCTT 57.578 40.909 0.00 0.00 37.60 2.40
2537 5860 4.321718 CTGATGTCCACTCTGTTTGTGAT 58.678 43.478 0.00 0.00 37.60 3.06
2538 5861 3.732212 CTGATGTCCACTCTGTTTGTGA 58.268 45.455 0.00 0.00 37.60 3.58
2539 5862 2.225019 GCTGATGTCCACTCTGTTTGTG 59.775 50.000 0.00 0.00 35.39 3.33
2541 5864 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
2542 5865 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
2543 5866 3.834813 TCTAAGCTGATGTCCACTCTGTT 59.165 43.478 0.00 0.00 0.00 3.16
2545 5868 4.669206 ATCTAAGCTGATGTCCACTCTG 57.331 45.455 0.00 0.00 0.00 3.35
2563 5886 8.948401 AGGACACATCTAACTATGTCATATCT 57.052 34.615 5.66 0.00 42.66 1.98
2566 5889 9.286170 GTCTAGGACACATCTAACTATGTCATA 57.714 37.037 5.66 2.11 42.66 2.15
2568 5891 7.116736 TGTCTAGGACACATCTAACTATGTCA 58.883 38.462 5.66 0.00 42.66 3.58
2570 5893 7.283580 GTCTGTCTAGGACACATCTAACTATGT 59.716 40.741 0.00 0.00 40.75 2.29
2571 5894 7.255312 GGTCTGTCTAGGACACATCTAACTATG 60.255 44.444 0.00 0.00 37.67 2.23
2573 5896 6.120905 GGTCTGTCTAGGACACATCTAACTA 58.879 44.000 0.00 0.00 37.67 2.24
2575 5898 4.098196 GGGTCTGTCTAGGACACATCTAAC 59.902 50.000 0.00 0.00 37.67 2.34
2576 5899 4.017407 AGGGTCTGTCTAGGACACATCTAA 60.017 45.833 3.18 0.00 39.36 2.10
2577 5900 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
2579 5902 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
2580 5903 2.930109 AGGGTCTGTCTAGGACACAT 57.070 50.000 3.18 0.00 39.36 3.21
2581 5904 2.696526 AAGGGTCTGTCTAGGACACA 57.303 50.000 3.18 0.00 39.36 3.72
2583 5906 3.254093 TGAAAGGGTCTGTCTAGGACA 57.746 47.619 0.43 0.43 40.50 4.02
2585 5908 6.202331 TGAATATGAAAGGGTCTGTCTAGGA 58.798 40.000 0.00 0.00 0.00 2.94
2586 5909 6.485830 TGAATATGAAAGGGTCTGTCTAGG 57.514 41.667 0.00 0.00 0.00 3.02
2590 5913 9.956720 CAAAATATGAATATGAAAGGGTCTGTC 57.043 33.333 0.00 0.00 0.00 3.51
2591 5914 9.479549 ACAAAATATGAATATGAAAGGGTCTGT 57.520 29.630 0.00 0.00 0.00 3.41
2605 5928 8.928733 GCATCACTGAACAAACAAAATATGAAT 58.071 29.630 0.00 0.00 0.00 2.57
2606 5929 7.924947 TGCATCACTGAACAAACAAAATATGAA 59.075 29.630 0.00 0.00 0.00 2.57
2608 5931 7.503991 GTGCATCACTGAACAAACAAAATATG 58.496 34.615 0.00 0.00 30.42 1.78
2609 5932 6.363088 CGTGCATCACTGAACAAACAAAATAT 59.637 34.615 0.00 0.00 29.14 1.28
2611 5934 4.503734 CGTGCATCACTGAACAAACAAAAT 59.496 37.500 0.00 0.00 29.14 1.82
2612 5935 3.856521 CGTGCATCACTGAACAAACAAAA 59.143 39.130 0.00 0.00 29.14 2.44
2613 5936 3.127721 TCGTGCATCACTGAACAAACAAA 59.872 39.130 0.00 0.00 29.14 2.83
2614 5937 2.680339 TCGTGCATCACTGAACAAACAA 59.320 40.909 0.00 0.00 29.14 2.83
2623 5959 2.273557 TCATGACATCGTGCATCACTG 58.726 47.619 0.00 0.00 33.05 3.66
2646 5982 2.736579 AATGCGCTGACAGCCTGACA 62.737 55.000 21.55 14.44 38.18 3.58
2647 5983 1.580845 AAATGCGCTGACAGCCTGAC 61.581 55.000 21.55 9.34 38.18 3.51
2648 5984 0.890542 AAAATGCGCTGACAGCCTGA 60.891 50.000 21.55 6.03 38.18 3.86
2649 5985 0.038892 AAAAATGCGCTGACAGCCTG 60.039 50.000 21.55 9.79 38.18 4.85
2650 5986 1.470098 CTAAAAATGCGCTGACAGCCT 59.530 47.619 21.55 3.98 38.18 4.58
2651 5987 1.468520 TCTAAAAATGCGCTGACAGCC 59.531 47.619 21.55 14.34 38.18 4.85
2652 5988 2.160417 ACTCTAAAAATGCGCTGACAGC 59.840 45.455 17.84 17.84 38.02 4.40
2653 5989 3.187227 ACACTCTAAAAATGCGCTGACAG 59.813 43.478 9.73 0.00 0.00 3.51
2737 6077 9.852091 CCGAGTAAGTACTAGTACAAATTCTTT 57.148 33.333 29.87 17.70 38.48 2.52
2745 6085 7.201679 GCTCAATTCCGAGTAAGTACTAGTACA 60.202 40.741 29.87 11.74 36.50 2.90
2746 6086 7.131565 GCTCAATTCCGAGTAAGTACTAGTAC 58.868 42.308 23.03 23.03 36.50 2.73
2747 6087 6.018425 CGCTCAATTCCGAGTAAGTACTAGTA 60.018 42.308 0.00 0.00 36.50 1.82
2748 6088 5.220815 CGCTCAATTCCGAGTAAGTACTAGT 60.221 44.000 0.00 0.00 36.50 2.57
2752 6094 3.114065 CCGCTCAATTCCGAGTAAGTAC 58.886 50.000 0.00 0.00 35.33 2.73
2758 6100 1.471119 TCTACCGCTCAATTCCGAGT 58.529 50.000 0.00 0.00 35.33 4.18
2763 6105 5.241064 TCCTACTACATCTACCGCTCAATTC 59.759 44.000 0.00 0.00 0.00 2.17
2772 6114 2.479656 CGCTCGTCCTACTACATCTACC 59.520 54.545 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.