Multiple sequence alignment - TraesCS7D01G258000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G258000 chr7D 100.000 4400 0 0 1 4400 233871060 233866661 0.000000e+00 8126.0
1 TraesCS7D01G258000 chr7D 95.238 42 2 0 1055 1096 246828712 246828671 2.840000e-07 67.6
2 TraesCS7D01G258000 chr7A 90.754 3699 185 63 356 3989 246603731 246600125 0.000000e+00 4791.0
3 TraesCS7D01G258000 chr7A 95.076 264 8 4 48 308 246604106 246603845 1.140000e-110 411.0
4 TraesCS7D01G258000 chr7A 93.548 186 12 0 4215 4400 246598401 246598216 1.210000e-70 278.0
5 TraesCS7D01G258000 chr7A 95.082 122 6 0 3988 4109 246599831 246599710 4.490000e-45 193.0
6 TraesCS7D01G258000 chr7B 92.295 1791 89 21 2329 4096 205353181 205351417 0.000000e+00 2497.0
7 TraesCS7D01G258000 chr7B 90.289 1802 89 26 535 2308 205355195 205353452 0.000000e+00 2279.0
8 TraesCS7D01G258000 chr7B 92.251 271 7 8 48 308 205363172 205362906 5.370000e-99 372.0
9 TraesCS7D01G258000 chr7B 90.865 208 18 1 4193 4400 205260298 205260092 1.210000e-70 278.0
10 TraesCS7D01G258000 chr7B 92.857 56 3 1 3896 3950 13866655 13866710 3.650000e-11 80.5
11 TraesCS7D01G258000 chr1A 76.871 441 82 17 3963 4394 58266012 58266441 9.520000e-57 231.0
12 TraesCS7D01G258000 chr1B 88.947 190 9 3 356 533 569523161 569522972 1.590000e-54 224.0
13 TraesCS7D01G258000 chr1B 85.714 56 2 2 3896 3950 629854940 629854990 2.000000e-03 54.7
14 TraesCS7D01G258000 chr3A 75.578 303 66 8 4044 4339 465842418 465842719 4.590000e-30 143.0
15 TraesCS7D01G258000 chr3A 95.238 42 2 0 1056 1097 662396344 662396385 2.840000e-07 67.6
16 TraesCS7D01G258000 chr3A 95.122 41 2 0 1057 1097 662396498 662396538 1.020000e-06 65.8
17 TraesCS7D01G258000 chr3A 100.000 28 0 0 3896 3923 37344018 37344045 8.000000e-03 52.8
18 TraesCS7D01G258000 chr6B 97.727 44 0 1 1053 1096 712185956 712185998 1.700000e-09 75.0
19 TraesCS7D01G258000 chr2D 95.349 43 2 0 3896 3938 613101972 613101930 7.900000e-08 69.4
20 TraesCS7D01G258000 chr1D 91.837 49 3 1 1049 1096 472908127 472908175 2.840000e-07 67.6
21 TraesCS7D01G258000 chr5D 93.333 45 1 2 1052 1096 410508136 410508178 1.020000e-06 65.8
22 TraesCS7D01G258000 chr3D 95.122 41 2 0 1057 1097 527667242 527667282 1.020000e-06 65.8
23 TraesCS7D01G258000 chr3D 91.667 48 1 2 1049 1096 101551363 101551319 3.670000e-06 63.9
24 TraesCS7D01G258000 chr3D 88.235 51 5 1 1047 1096 578772379 578772329 4.750000e-05 60.2
25 TraesCS7D01G258000 chr2B 89.583 48 2 3 3856 3902 481640697 481640652 1.710000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G258000 chr7D 233866661 233871060 4399 True 8126.00 8126 100.000 1 4400 1 chr7D.!!$R1 4399
1 TraesCS7D01G258000 chr7A 246598216 246604106 5890 True 1418.25 4791 93.615 48 4400 4 chr7A.!!$R1 4352
2 TraesCS7D01G258000 chr7B 205351417 205355195 3778 True 2388.00 2497 91.292 535 4096 2 chr7B.!!$R3 3561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 939 0.179000 CAGCGCATATATCCCCCTCC 59.821 60.0 11.47 0.00 0.00 4.30 F
1420 1547 0.166814 GAGCTAGTTTGCGGCAACAG 59.833 55.0 16.15 13.43 38.13 3.16 F
2992 3394 0.251877 TCCGGTCAGTGTACCATGGA 60.252 55.0 21.47 0.00 39.71 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2215 1.271379 ACATGCATGTCAACTTGGCAG 59.729 47.619 26.61 0.0 34.38 4.85 R
3268 3682 0.529992 GGATCGACATGGACGAACCC 60.530 60.000 22.91 19.5 43.44 4.11 R
4180 5161 0.108585 AATGTCCAGTGCGTTGGTCT 59.891 50.000 6.23 0.0 39.35 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.360649 TTTTTGGGTTTGAGGGTTTAAGG 57.639 39.130 0.00 0.00 0.00 2.69
29 30 2.687003 TGGGTTTGAGGGTTTAAGGG 57.313 50.000 0.00 0.00 0.00 3.95
30 31 1.860906 TGGGTTTGAGGGTTTAAGGGT 59.139 47.619 0.00 0.00 0.00 4.34
31 32 2.247897 TGGGTTTGAGGGTTTAAGGGTT 59.752 45.455 0.00 0.00 0.00 4.11
32 33 2.895404 GGGTTTGAGGGTTTAAGGGTTC 59.105 50.000 0.00 0.00 0.00 3.62
33 34 3.437491 GGGTTTGAGGGTTTAAGGGTTCT 60.437 47.826 0.00 0.00 0.00 3.01
34 35 4.202599 GGGTTTGAGGGTTTAAGGGTTCTA 60.203 45.833 0.00 0.00 0.00 2.10
35 36 4.763793 GGTTTGAGGGTTTAAGGGTTCTAC 59.236 45.833 0.00 0.00 0.00 2.59
36 37 5.457197 GGTTTGAGGGTTTAAGGGTTCTACT 60.457 44.000 0.00 0.00 0.00 2.57
37 38 6.239973 GGTTTGAGGGTTTAAGGGTTCTACTA 60.240 42.308 0.00 0.00 0.00 1.82
38 39 7.226441 GTTTGAGGGTTTAAGGGTTCTACTAA 58.774 38.462 0.00 0.00 0.00 2.24
39 40 7.578458 TTGAGGGTTTAAGGGTTCTACTAAT 57.422 36.000 0.00 0.00 0.00 1.73
40 41 8.683776 TTGAGGGTTTAAGGGTTCTACTAATA 57.316 34.615 0.00 0.00 0.00 0.98
41 42 8.683776 TGAGGGTTTAAGGGTTCTACTAATAA 57.316 34.615 0.00 0.00 0.00 1.40
42 43 9.287818 TGAGGGTTTAAGGGTTCTACTAATAAT 57.712 33.333 0.00 0.00 0.00 1.28
43 44 9.557061 GAGGGTTTAAGGGTTCTACTAATAATG 57.443 37.037 0.00 0.00 0.00 1.90
44 45 7.997223 AGGGTTTAAGGGTTCTACTAATAATGC 59.003 37.037 0.00 0.00 0.00 3.56
45 46 7.997223 GGGTTTAAGGGTTCTACTAATAATGCT 59.003 37.037 0.00 0.00 0.00 3.79
46 47 9.053840 GGTTTAAGGGTTCTACTAATAATGCTC 57.946 37.037 0.00 0.00 0.00 4.26
167 168 6.547141 TGCCAAGGATTTTTCAATAGATCGAT 59.453 34.615 0.00 0.00 0.00 3.59
220 221 2.260869 GGCACACATGTTGGCGAGT 61.261 57.895 15.13 0.00 0.00 4.18
234 235 1.583967 CGAGTAGGAGCGCGTCAAG 60.584 63.158 8.43 0.00 0.00 3.02
253 254 2.613506 CGGTCCCGTTTTCCAGCAC 61.614 63.158 0.00 0.00 34.35 4.40
262 263 2.602217 CGTTTTCCAGCACTTTTCTCCG 60.602 50.000 0.00 0.00 0.00 4.63
289 290 2.240279 CCCCATGGTTTCCGTGTTTTA 58.760 47.619 11.73 0.00 38.76 1.52
292 293 4.097286 CCCCATGGTTTCCGTGTTTTATAG 59.903 45.833 11.73 0.00 38.76 1.31
293 294 4.944930 CCCATGGTTTCCGTGTTTTATAGA 59.055 41.667 11.73 0.00 38.76 1.98
308 347 9.599322 GTGTTTTATAGATGACTCAGTTGTTTG 57.401 33.333 0.00 0.00 0.00 2.93
310 349 9.813080 GTTTTATAGATGACTCAGTTGTTTGTC 57.187 33.333 0.00 0.00 0.00 3.18
329 368 3.181490 TGTCGAGCAAGCAGTATACGATT 60.181 43.478 0.00 0.00 0.00 3.34
330 369 3.797256 GTCGAGCAAGCAGTATACGATTT 59.203 43.478 0.00 0.00 0.00 2.17
331 370 4.042398 TCGAGCAAGCAGTATACGATTTC 58.958 43.478 0.00 0.00 0.00 2.17
332 371 4.045104 CGAGCAAGCAGTATACGATTTCT 58.955 43.478 0.00 0.00 0.00 2.52
334 373 5.005779 CGAGCAAGCAGTATACGATTTCTTT 59.994 40.000 0.00 0.00 0.00 2.52
335 374 6.455646 CGAGCAAGCAGTATACGATTTCTTTT 60.456 38.462 0.00 0.00 0.00 2.27
336 375 7.145932 AGCAAGCAGTATACGATTTCTTTTT 57.854 32.000 0.00 0.00 0.00 1.94
364 433 6.260050 TGGGAAAGTATACGATGAATTTGCTC 59.740 38.462 0.00 0.00 0.00 4.26
374 443 4.617959 GATGAATTTGCTCCACCATGATG 58.382 43.478 0.00 0.00 0.00 3.07
385 454 1.394572 CACCATGATGTGTGCACGTAG 59.605 52.381 13.13 0.00 0.00 3.51
387 456 1.675714 CCATGATGTGTGCACGTAGGT 60.676 52.381 13.13 0.00 0.00 3.08
400 469 2.223144 CACGTAGGTGGTTGATTGTGTG 59.777 50.000 7.69 0.00 40.58 3.82
416 486 1.066502 GTGTGAAGGCTTCTCTCTCCC 60.067 57.143 26.26 7.89 0.00 4.30
425 495 4.656575 AGGCTTCTCTCTCCCTTAATTACC 59.343 45.833 0.00 0.00 0.00 2.85
430 500 5.600749 TCTCTCTCCCTTAATTACCTTGGT 58.399 41.667 0.00 0.00 0.00 3.67
491 561 0.466543 AATCCACGTAGCCGCCATTA 59.533 50.000 0.00 0.00 37.70 1.90
498 570 1.402984 CGTAGCCGCCATTATCTCTCC 60.403 57.143 0.00 0.00 0.00 3.71
505 577 0.389391 CCATTATCTCTCCGCACCGT 59.611 55.000 0.00 0.00 0.00 4.83
560 632 4.150203 ACGCGTGTGGGTGTGACA 62.150 61.111 12.93 0.00 40.17 3.58
572 644 2.743538 GTGACATGAGCGGCTGCA 60.744 61.111 21.93 5.87 46.23 4.41
593 665 7.492669 GCTGCACTATAGAAAAATGTAGAGTCA 59.507 37.037 6.78 0.00 0.00 3.41
740 815 1.686115 CCAAACCATCCATCCCTGTCC 60.686 57.143 0.00 0.00 0.00 4.02
864 939 0.179000 CAGCGCATATATCCCCCTCC 59.821 60.000 11.47 0.00 0.00 4.30
943 1020 2.107041 TACAACACAGAGCACCCCCG 62.107 60.000 0.00 0.00 0.00 5.73
944 1021 3.953775 AACACAGAGCACCCCCGG 61.954 66.667 0.00 0.00 0.00 5.73
1047 1155 0.807496 GCTCATCCCTGCAAGAACAC 59.193 55.000 0.00 0.00 34.07 3.32
1056 1164 2.624838 CCTGCAAGAACACATGTTTCCT 59.375 45.455 0.00 0.00 38.56 3.36
1057 1165 3.068590 CCTGCAAGAACACATGTTTCCTT 59.931 43.478 0.00 0.00 38.56 3.36
1058 1166 4.441913 CCTGCAAGAACACATGTTTCCTTT 60.442 41.667 0.00 0.00 38.56 3.11
1059 1167 5.083533 TGCAAGAACACATGTTTCCTTTT 57.916 34.783 0.00 0.00 38.56 2.27
1060 1168 5.486526 TGCAAGAACACATGTTTCCTTTTT 58.513 33.333 0.00 0.00 38.56 1.94
1083 1191 3.144657 TCCGAAAAGGAGGTTAAACCC 57.855 47.619 0.00 0.00 45.98 4.11
1084 1192 2.165167 CCGAAAAGGAGGTTAAACCCC 58.835 52.381 0.00 0.00 45.00 4.95
1085 1193 2.165167 CGAAAAGGAGGTTAAACCCCC 58.835 52.381 0.00 0.00 39.75 5.40
1086 1194 2.165167 GAAAAGGAGGTTAAACCCCCG 58.835 52.381 0.00 0.00 39.75 5.73
1087 1195 0.406750 AAAGGAGGTTAAACCCCCGG 59.593 55.000 0.00 0.00 39.75 5.73
1088 1196 2.044650 GGAGGTTAAACCCCCGGC 60.045 66.667 0.00 0.00 39.75 6.13
1089 1197 2.044650 GAGGTTAAACCCCCGGCC 60.045 66.667 0.00 0.00 39.75 6.13
1090 1198 2.533492 AGGTTAAACCCCCGGCCT 60.533 61.111 0.00 0.00 39.75 5.19
1091 1199 2.044650 GGTTAAACCCCCGGCCTC 60.045 66.667 0.00 0.00 30.04 4.70
1132 1240 1.256812 ACCTTGATTCCCGCAAAAGG 58.743 50.000 0.00 0.00 42.57 3.11
1353 1480 2.629137 TCTGCACCATTTGAATTGCACT 59.371 40.909 0.00 0.00 40.01 4.40
1416 1543 2.034879 GCAGAGCTAGTTTGCGGCA 61.035 57.895 0.00 0.00 38.13 5.69
1420 1547 0.166814 GAGCTAGTTTGCGGCAACAG 59.833 55.000 16.15 13.43 38.13 3.16
1594 1721 5.293569 CGGCAGGTTAACTCTTAGTAATTGG 59.706 44.000 5.42 0.00 0.00 3.16
1671 1800 7.700322 ACTACTAGTGCGTAATCAATCATTG 57.300 36.000 5.39 0.00 0.00 2.82
1677 1806 7.087409 AGTGCGTAATCAATCATTGAATTGA 57.913 32.000 3.63 11.39 46.60 2.57
1735 1864 4.402829 TGATTCGGTTTGGAATTGGAAGA 58.597 39.130 0.00 0.00 36.79 2.87
1741 1870 3.756434 GGTTTGGAATTGGAAGATGTCGA 59.244 43.478 0.00 0.00 0.00 4.20
1853 1990 1.988834 GAAGTGCATTAACCCGCCCG 61.989 60.000 0.00 0.00 0.00 6.13
1854 1991 4.187810 GTGCATTAACCCGCCCGC 62.188 66.667 0.00 0.00 0.00 6.13
1891 2028 4.373116 TCGTCCAAGTGGCGAGGC 62.373 66.667 11.23 0.00 38.26 4.70
1938 2078 6.262944 TGATTACATATTCAACAGGTCCATGC 59.737 38.462 0.00 0.00 0.00 4.06
2049 2190 1.398390 GTCGTACGGTCGTACCAATCT 59.602 52.381 22.63 0.00 45.80 2.40
2073 2215 1.244019 CCACTTGTGCTACTTGGCCC 61.244 60.000 0.00 0.00 0.00 5.80
2121 2266 6.258727 CCGCACATGTTAATAATCTTCTGACT 59.741 38.462 0.00 0.00 0.00 3.41
2123 2268 8.269424 CGCACATGTTAATAATCTTCTGACTAC 58.731 37.037 0.00 0.00 0.00 2.73
2135 2281 5.133941 TCTTCTGACTACGGCTAATGATCT 58.866 41.667 0.00 0.00 0.00 2.75
2146 2292 3.314635 GGCTAATGATCTTCACCAAGCAG 59.685 47.826 0.00 0.00 33.16 4.24
2220 2366 1.204146 GATGTCCCCTAGGCTGTTCA 58.796 55.000 2.05 0.00 0.00 3.18
2300 2446 6.145534 TCTCTAGCGTGTTTATTCTGTGTTTG 59.854 38.462 0.00 0.00 0.00 2.93
2370 2766 7.856145 ATCGCTGTGATTTTCTCTTAATCTT 57.144 32.000 0.00 0.00 31.57 2.40
2395 2791 3.673338 GGTGCCTTGAAATAAAAACGAGC 59.327 43.478 0.00 0.00 0.00 5.03
2402 2802 5.796350 TGAAATAAAAACGAGCTAGAGGC 57.204 39.130 0.00 0.00 42.19 4.70
2428 2828 2.740981 CAGCATGTGGTTGACTCTTCTC 59.259 50.000 0.00 0.00 0.00 2.87
2435 2835 3.070302 GTGGTTGACTCTTCTCCTGTTCT 59.930 47.826 0.00 0.00 0.00 3.01
2532 2932 0.728129 CGCTCTACTTCGACAACGCA 60.728 55.000 0.00 0.00 39.58 5.24
2749 3149 4.011517 CCCCGTACCACCGCAACT 62.012 66.667 0.00 0.00 0.00 3.16
2829 3229 4.314440 GTGGAGCAGTCACCGGCA 62.314 66.667 0.00 0.00 33.84 5.69
2992 3394 0.251877 TCCGGTCAGTGTACCATGGA 60.252 55.000 21.47 0.00 39.71 3.41
3196 3598 2.970324 GGCAAGGACAACGTCGCA 60.970 61.111 0.00 0.00 32.65 5.10
3205 3607 1.330521 GACAACGTCGCATATGGCAAT 59.669 47.619 4.56 0.00 45.17 3.56
3268 3682 6.429692 TGAGTTCCACAACCTTAATGTACATG 59.570 38.462 9.63 0.00 32.22 3.21
3273 3687 5.105917 CCACAACCTTAATGTACATGGGTTC 60.106 44.000 25.33 0.00 35.24 3.62
3297 3711 2.123342 CATGTCGATCCTCGCTTTCTC 58.877 52.381 0.00 0.00 40.21 2.87
3308 3722 2.932614 CTCGCTTTCTCATTCGGTGATT 59.067 45.455 0.00 0.00 35.97 2.57
3312 3726 4.201851 CGCTTTCTCATTCGGTGATTGATT 60.202 41.667 0.00 0.00 35.97 2.57
3337 3751 3.247033 GCTCGCCATGAATTTGAGC 57.753 52.632 0.00 1.59 44.37 4.26
3347 3761 6.567050 GCCATGAATTTGAGCTCTGAATTAA 58.433 36.000 20.94 16.85 0.00 1.40
3446 3864 3.425162 AGTAAGCAAGGACTTTGGGAG 57.575 47.619 0.00 0.00 37.26 4.30
3462 3880 6.323739 ACTTTGGGAGTGTAAATTGTGTGAAT 59.676 34.615 0.00 0.00 37.17 2.57
3646 4064 8.726988 GGTTGTTGTAATGCTAGAATTCTGTTA 58.273 33.333 18.47 8.79 0.00 2.41
3652 4070 3.101437 TGCTAGAATTCTGTTACGGGGA 58.899 45.455 18.47 0.00 0.00 4.81
3671 4089 2.618709 GGATTGTAGTGCAATACTGGGC 59.381 50.000 23.33 11.02 46.90 5.36
3681 4099 2.287915 GCAATACTGGGCACTGATTACG 59.712 50.000 0.00 0.00 0.00 3.18
3694 4112 6.691388 GGCACTGATTACGTTTAATCCAATTC 59.309 38.462 8.26 0.00 42.13 2.17
3695 4113 6.410914 GCACTGATTACGTTTAATCCAATTCG 59.589 38.462 8.26 0.00 42.13 3.34
3754 4172 1.813753 CCGCGAATGTCGAACCCAT 60.814 57.895 8.23 0.00 43.74 4.00
3863 4283 9.646427 GTTGTATGGAGAGAGATCAATAATACC 57.354 37.037 0.00 0.00 0.00 2.73
3906 4326 8.290663 AGTGTCGTTGATTTAGTTGTACTAAC 57.709 34.615 0.00 0.00 40.12 2.34
3925 4345 9.211485 GTACTAACTTTGTACTAAATCAGCCAA 57.789 33.333 6.34 0.00 37.76 4.52
4097 4814 6.460781 ACTCATCCAAATAACGTCACTAACA 58.539 36.000 0.00 0.00 0.00 2.41
4126 5107 7.320443 ACAACTTGCATCGTGATTATATTGT 57.680 32.000 0.00 0.00 0.00 2.71
4138 5119 7.338196 TCGTGATTATATTGTCCAACCAATGTT 59.662 33.333 0.00 0.00 35.85 2.71
4150 5131 4.096231 CCAACCAATGTTCTTATCATCGCA 59.904 41.667 0.00 0.00 30.42 5.10
4163 5144 0.852777 CATCGCACGGGATTACTTCG 59.147 55.000 0.00 0.00 0.00 3.79
4180 5161 3.674997 CTTCGGTTGAAGGATTTCTCCA 58.325 45.455 0.00 0.00 46.44 3.86
4193 5174 0.249868 TTCTCCAGACCAACGCACTG 60.250 55.000 0.00 0.00 0.00 3.66
4223 6143 0.252696 TACTGCACTCATGGTCCCCT 60.253 55.000 0.00 0.00 0.00 4.79
4241 6161 2.229784 CCCTAGAAGTTGCTTTTGGCTG 59.770 50.000 0.00 0.00 42.39 4.85
4244 6164 0.940991 GAAGTTGCTTTTGGCTGCCG 60.941 55.000 14.98 0.00 42.39 5.69
4268 6188 5.290493 ACTAATCCTTATTGTCATCGGCA 57.710 39.130 0.00 0.00 0.00 5.69
4275 6195 2.613026 ATTGTCATCGGCATTCGGTA 57.387 45.000 0.00 0.00 39.77 4.02
4318 6238 4.462133 CACTTTACCTCCTCCTAGATCGA 58.538 47.826 0.00 0.00 0.00 3.59
4321 6241 5.073965 ACTTTACCTCCTCCTAGATCGATCT 59.926 44.000 29.58 29.58 40.86 2.75
4339 6259 3.700863 TCTAAGGCATACCAGGTACCT 57.299 47.619 9.21 9.21 39.06 3.08
4341 6261 0.546598 AAGGCATACCAGGTACCTGC 59.453 55.000 32.98 22.93 42.35 4.85
4353 6273 2.697751 AGGTACCTGCTGAGCATTAGAG 59.302 50.000 15.42 0.00 38.13 2.43
4374 6294 7.872113 AGAGTGAGAAAGACAAAGACAAATT 57.128 32.000 0.00 0.00 0.00 1.82
4389 6309 9.687717 CAAAGACAAATTTGTTGTGAATAACAC 57.312 29.630 24.02 7.57 44.52 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.164413 CCCTTAAACCCTCAAACCCAAAAA 59.836 41.667 0.00 0.00 0.00 1.94
7 8 3.712218 CCCTTAAACCCTCAAACCCAAAA 59.288 43.478 0.00 0.00 0.00 2.44
8 9 3.310193 CCCTTAAACCCTCAAACCCAAA 58.690 45.455 0.00 0.00 0.00 3.28
9 10 2.247897 ACCCTTAAACCCTCAAACCCAA 59.752 45.455 0.00 0.00 0.00 4.12
10 11 1.860906 ACCCTTAAACCCTCAAACCCA 59.139 47.619 0.00 0.00 0.00 4.51
11 12 2.688902 ACCCTTAAACCCTCAAACCC 57.311 50.000 0.00 0.00 0.00 4.11
12 13 3.840991 AGAACCCTTAAACCCTCAAACC 58.159 45.455 0.00 0.00 0.00 3.27
13 14 5.628130 AGTAGAACCCTTAAACCCTCAAAC 58.372 41.667 0.00 0.00 0.00 2.93
14 15 5.917545 AGTAGAACCCTTAAACCCTCAAA 57.082 39.130 0.00 0.00 0.00 2.69
15 16 7.578458 ATTAGTAGAACCCTTAAACCCTCAA 57.422 36.000 0.00 0.00 0.00 3.02
16 17 8.683776 TTATTAGTAGAACCCTTAAACCCTCA 57.316 34.615 0.00 0.00 0.00 3.86
17 18 9.557061 CATTATTAGTAGAACCCTTAAACCCTC 57.443 37.037 0.00 0.00 0.00 4.30
18 19 7.997223 GCATTATTAGTAGAACCCTTAAACCCT 59.003 37.037 0.00 0.00 0.00 4.34
19 20 7.997223 AGCATTATTAGTAGAACCCTTAAACCC 59.003 37.037 0.00 0.00 0.00 4.11
20 21 8.975663 AGCATTATTAGTAGAACCCTTAAACC 57.024 34.615 0.00 0.00 0.00 3.27
21 22 9.833917 AGAGCATTATTAGTAGAACCCTTAAAC 57.166 33.333 0.00 0.00 0.00 2.01
25 26 8.151596 GCTAAGAGCATTATTAGTAGAACCCTT 58.848 37.037 0.00 0.00 41.89 3.95
26 27 7.256368 GGCTAAGAGCATTATTAGTAGAACCCT 60.256 40.741 0.21 0.00 44.75 4.34
27 28 6.874664 GGCTAAGAGCATTATTAGTAGAACCC 59.125 42.308 0.21 0.00 44.75 4.11
28 29 7.600752 CAGGCTAAGAGCATTATTAGTAGAACC 59.399 40.741 0.21 0.00 44.75 3.62
29 30 7.600752 CCAGGCTAAGAGCATTATTAGTAGAAC 59.399 40.741 0.21 0.00 44.75 3.01
30 31 7.509318 TCCAGGCTAAGAGCATTATTAGTAGAA 59.491 37.037 0.21 0.00 44.75 2.10
31 32 7.010771 TCCAGGCTAAGAGCATTATTAGTAGA 58.989 38.462 0.21 0.00 44.75 2.59
32 33 7.233389 TCCAGGCTAAGAGCATTATTAGTAG 57.767 40.000 0.21 0.00 44.75 2.57
33 34 7.310671 CCATCCAGGCTAAGAGCATTATTAGTA 60.311 40.741 0.21 0.00 44.75 1.82
34 35 6.471146 CATCCAGGCTAAGAGCATTATTAGT 58.529 40.000 0.21 0.00 44.75 2.24
35 36 5.879223 CCATCCAGGCTAAGAGCATTATTAG 59.121 44.000 0.21 0.00 44.75 1.73
36 37 5.310594 ACCATCCAGGCTAAGAGCATTATTA 59.689 40.000 0.21 0.00 44.75 0.98
37 38 4.105377 ACCATCCAGGCTAAGAGCATTATT 59.895 41.667 0.21 0.00 44.75 1.40
38 39 3.654806 ACCATCCAGGCTAAGAGCATTAT 59.345 43.478 0.21 0.00 44.75 1.28
39 40 3.048600 ACCATCCAGGCTAAGAGCATTA 58.951 45.455 0.21 0.00 44.75 1.90
40 41 1.849039 ACCATCCAGGCTAAGAGCATT 59.151 47.619 0.21 0.00 44.75 3.56
41 42 1.142465 CACCATCCAGGCTAAGAGCAT 59.858 52.381 0.21 0.00 44.75 3.79
42 43 0.543277 CACCATCCAGGCTAAGAGCA 59.457 55.000 0.21 0.00 44.75 4.26
43 44 0.179034 CCACCATCCAGGCTAAGAGC 60.179 60.000 0.00 0.00 43.14 4.09
44 45 1.134280 CACCACCATCCAGGCTAAGAG 60.134 57.143 0.00 0.00 43.14 2.85
45 46 0.911769 CACCACCATCCAGGCTAAGA 59.088 55.000 0.00 0.00 43.14 2.10
46 47 0.107017 CCACCACCATCCAGGCTAAG 60.107 60.000 0.00 0.00 43.14 2.18
83 84 1.813753 CCTTGGCATCACCGTACCG 60.814 63.158 0.00 0.00 43.94 4.02
211 212 2.886124 GCGCTCCTACTCGCCAAC 60.886 66.667 0.00 0.00 45.01 3.77
234 235 3.733960 GCTGGAAAACGGGACCGC 61.734 66.667 11.21 0.00 44.19 5.68
241 242 2.602217 CGGAGAAAAGTGCTGGAAAACG 60.602 50.000 0.00 0.00 0.00 3.60
253 254 2.853705 TGGGGTGTAAACGGAGAAAAG 58.146 47.619 0.00 0.00 0.00 2.27
289 290 6.025749 TCGACAAACAACTGAGTCATCTAT 57.974 37.500 0.00 0.00 0.00 1.98
292 293 3.120854 GCTCGACAAACAACTGAGTCATC 60.121 47.826 0.00 0.00 0.00 2.92
293 294 2.802816 GCTCGACAAACAACTGAGTCAT 59.197 45.455 0.00 0.00 0.00 3.06
308 347 2.470196 TCGTATACTGCTTGCTCGAC 57.530 50.000 0.56 0.00 0.00 4.20
310 349 4.045104 AGAAATCGTATACTGCTTGCTCG 58.955 43.478 0.56 0.00 0.00 5.03
335 374 9.632807 CAAATTCATCGTATACTTTCCCAAAAA 57.367 29.630 0.56 0.00 0.00 1.94
336 375 7.757624 GCAAATTCATCGTATACTTTCCCAAAA 59.242 33.333 0.56 0.00 0.00 2.44
341 380 6.260050 TGGAGCAAATTCATCGTATACTTTCC 59.740 38.462 0.56 0.00 0.00 3.13
342 381 7.126398 GTGGAGCAAATTCATCGTATACTTTC 58.874 38.462 0.56 0.00 0.00 2.62
343 382 6.038271 GGTGGAGCAAATTCATCGTATACTTT 59.962 38.462 0.56 0.00 0.00 2.66
344 383 5.527582 GGTGGAGCAAATTCATCGTATACTT 59.472 40.000 0.56 0.00 0.00 2.24
345 384 5.057149 GGTGGAGCAAATTCATCGTATACT 58.943 41.667 0.56 0.00 0.00 2.12
346 385 4.814234 TGGTGGAGCAAATTCATCGTATAC 59.186 41.667 0.00 0.00 0.00 1.47
348 387 3.884895 TGGTGGAGCAAATTCATCGTAT 58.115 40.909 0.00 0.00 0.00 3.06
349 388 3.342377 TGGTGGAGCAAATTCATCGTA 57.658 42.857 0.00 0.00 0.00 3.43
350 389 2.198827 TGGTGGAGCAAATTCATCGT 57.801 45.000 0.00 0.00 0.00 3.73
354 423 3.193903 CACATCATGGTGGAGCAAATTCA 59.806 43.478 11.45 0.00 35.13 2.57
364 433 1.236616 ACGTGCACACATCATGGTGG 61.237 55.000 18.64 1.83 43.08 4.61
374 443 0.531090 TCAACCACCTACGTGCACAC 60.531 55.000 18.64 0.00 38.79 3.82
385 454 1.000274 GCCTTCACACAATCAACCACC 60.000 52.381 0.00 0.00 0.00 4.61
387 456 2.363306 AGCCTTCACACAATCAACCA 57.637 45.000 0.00 0.00 0.00 3.67
388 457 2.887152 AGAAGCCTTCACACAATCAACC 59.113 45.455 7.29 0.00 0.00 3.77
400 469 5.366482 AATTAAGGGAGAGAGAAGCCTTC 57.634 43.478 0.00 0.00 0.00 3.46
451 521 9.791801 TGGATTGTATTAGTGTATGCATGTATT 57.208 29.630 10.16 0.00 0.00 1.89
452 522 9.219603 GTGGATTGTATTAGTGTATGCATGTAT 57.780 33.333 10.16 0.82 0.00 2.29
453 523 7.383843 CGTGGATTGTATTAGTGTATGCATGTA 59.616 37.037 10.16 0.00 0.00 2.29
454 524 6.202762 CGTGGATTGTATTAGTGTATGCATGT 59.797 38.462 10.16 0.00 0.00 3.21
455 525 6.202762 ACGTGGATTGTATTAGTGTATGCATG 59.797 38.462 10.16 0.00 32.11 4.06
458 528 6.128902 GCTACGTGGATTGTATTAGTGTATGC 60.129 42.308 1.81 0.00 0.00 3.14
461 531 5.506151 CGGCTACGTGGATTGTATTAGTGTA 60.506 44.000 1.81 0.00 34.81 2.90
475 545 0.033504 AGATAATGGCGGCTACGTGG 59.966 55.000 11.43 0.00 43.45 4.94
491 561 1.079819 CAACACGGTGCGGAGAGAT 60.080 57.895 8.30 0.00 0.00 2.75
498 570 1.626654 GACTGGATCAACACGGTGCG 61.627 60.000 8.30 0.00 0.00 5.34
505 577 1.003839 GCCACCGACTGGATCAACA 60.004 57.895 3.41 0.00 43.95 3.33
546 618 1.568612 GCTCATGTCACACCCACACG 61.569 60.000 0.00 0.00 0.00 4.49
560 632 1.332195 TCTATAGTGCAGCCGCTCAT 58.668 50.000 0.00 0.00 39.64 2.90
572 644 9.757227 GAGCATGACTCTACATTTTTCTATAGT 57.243 33.333 0.00 0.00 42.62 2.12
633 708 7.651808 ACTAAGCACTTTGTTACGTAGTCTAA 58.348 34.615 0.00 0.00 43.93 2.10
637 712 6.738114 TGTACTAAGCACTTTGTTACGTAGT 58.262 36.000 2.93 0.00 35.76 2.73
638 713 7.627585 TTGTACTAAGCACTTTGTTACGTAG 57.372 36.000 2.93 0.00 31.51 3.51
639 714 8.489559 CATTTGTACTAAGCACTTTGTTACGTA 58.510 33.333 2.93 0.00 31.51 3.57
640 715 6.907206 TTTGTACTAAGCACTTTGTTACGT 57.093 33.333 2.93 0.00 31.51 3.57
641 716 7.569297 TCATTTGTACTAAGCACTTTGTTACG 58.431 34.615 2.93 0.00 31.51 3.18
642 717 9.893305 AATCATTTGTACTAAGCACTTTGTTAC 57.107 29.630 2.93 1.80 31.51 2.50
644 719 7.803189 CGAATCATTTGTACTAAGCACTTTGTT 59.197 33.333 2.93 0.00 31.51 2.83
740 815 2.929592 GCAGGCGGGATTATAACTACGG 60.930 54.545 6.64 0.00 0.00 4.02
911 988 0.320374 TGTTGTAGAGGCGAGTTGGG 59.680 55.000 0.00 0.00 0.00 4.12
943 1020 3.682292 AACAAGAGATCCGGGCGCC 62.682 63.158 21.18 21.18 0.00 6.53
944 1021 2.125106 AACAAGAGATCCGGGCGC 60.125 61.111 0.00 0.00 0.00 6.53
959 1036 0.387565 GAGCGGAGAGGGAGATGAAC 59.612 60.000 0.00 0.00 0.00 3.18
1059 1167 5.163426 GGGTTTAACCTCCTTTTCGGAAAAA 60.163 40.000 14.27 2.86 42.53 1.94
1060 1168 4.341806 GGGTTTAACCTCCTTTTCGGAAAA 59.658 41.667 14.27 14.64 42.53 2.29
1061 1169 3.890756 GGGTTTAACCTCCTTTTCGGAAA 59.109 43.478 14.27 0.00 42.53 3.13
1062 1170 3.489355 GGGTTTAACCTCCTTTTCGGAA 58.511 45.455 14.27 0.00 42.53 4.30
1063 1171 2.224843 GGGGTTTAACCTCCTTTTCGGA 60.225 50.000 14.27 0.00 38.64 4.55
1064 1172 2.165167 GGGGTTTAACCTCCTTTTCGG 58.835 52.381 14.27 0.00 38.64 4.30
1072 1180 2.044650 GGCCGGGGGTTTAACCTC 60.045 66.667 14.27 10.11 38.29 3.85
1073 1181 2.533492 AGGCCGGGGGTTTAACCT 60.533 61.111 14.27 0.00 38.64 3.50
1074 1182 2.044650 GAGGCCGGGGGTTTAACC 60.045 66.667 5.40 5.40 37.60 2.85
1075 1183 1.378119 CAGAGGCCGGGGGTTTAAC 60.378 63.158 2.18 0.00 0.00 2.01
1076 1184 3.083386 CAGAGGCCGGGGGTTTAA 58.917 61.111 2.18 0.00 0.00 1.52
1077 1185 3.723922 GCAGAGGCCGGGGGTTTA 61.724 66.667 2.18 0.00 0.00 2.01
1084 1192 2.978010 AACGTTTGCAGAGGCCGG 60.978 61.111 0.00 0.00 40.13 6.13
1085 1193 2.252260 CAACGTTTGCAGAGGCCG 59.748 61.111 0.00 0.00 40.13 6.13
1086 1194 1.166531 AGACAACGTTTGCAGAGGCC 61.167 55.000 0.00 0.00 40.13 5.19
1087 1195 0.663153 AAGACAACGTTTGCAGAGGC 59.337 50.000 0.00 0.00 41.68 4.70
1088 1196 1.002468 CCAAGACAACGTTTGCAGAGG 60.002 52.381 0.00 0.00 0.00 3.69
1089 1197 1.670811 ACCAAGACAACGTTTGCAGAG 59.329 47.619 0.00 0.00 0.00 3.35
1090 1198 1.745232 ACCAAGACAACGTTTGCAGA 58.255 45.000 0.00 0.00 0.00 4.26
1091 1199 2.559998 AACCAAGACAACGTTTGCAG 57.440 45.000 0.00 0.00 0.00 4.41
1100 1208 5.303333 GGGAATCAAGGTAAAACCAAGACAA 59.697 40.000 0.00 0.00 41.95 3.18
1132 1240 4.457257 ACGAGAAACTACTACACCTGGTAC 59.543 45.833 0.00 0.00 0.00 3.34
1309 1436 5.048846 AGAAAAAGAACAGGTTGGCTCTA 57.951 39.130 0.00 0.00 0.00 2.43
1416 1543 2.222027 CGGCCAAGAAAGACTTCTGTT 58.778 47.619 2.24 0.00 41.23 3.16
1420 1547 2.218603 TCAACGGCCAAGAAAGACTTC 58.781 47.619 2.24 0.00 36.61 3.01
1651 1780 8.337532 TCAATTCAATGATTGATTACGCACTAG 58.662 33.333 8.90 0.00 40.20 2.57
1652 1781 8.207521 TCAATTCAATGATTGATTACGCACTA 57.792 30.769 8.90 0.00 40.20 2.74
1653 1782 7.087409 TCAATTCAATGATTGATTACGCACT 57.913 32.000 8.90 0.00 40.20 4.40
1671 1800 6.698329 TCGCCAATTCAATGATTGATCAATTC 59.302 34.615 21.57 14.63 40.69 2.17
1677 1806 6.401047 AGATTCGCCAATTCAATGATTGAT 57.599 33.333 8.90 0.00 39.84 2.57
1678 1807 5.840243 AGATTCGCCAATTCAATGATTGA 57.160 34.783 3.29 3.29 38.93 2.57
1679 1808 5.276678 GCAAGATTCGCCAATTCAATGATTG 60.277 40.000 0.00 0.00 36.89 2.67
1680 1809 4.807304 GCAAGATTCGCCAATTCAATGATT 59.193 37.500 0.00 0.00 0.00 2.57
1681 1810 4.365723 GCAAGATTCGCCAATTCAATGAT 58.634 39.130 0.00 0.00 0.00 2.45
1682 1811 3.772932 GCAAGATTCGCCAATTCAATGA 58.227 40.909 0.00 0.00 0.00 2.57
1735 1864 3.806380 AGTATGTCTACCTCGTCGACAT 58.194 45.455 17.16 14.12 45.97 3.06
1752 1881 4.773149 GCAAGGTAGATAGCCAGGTAGTAT 59.227 45.833 0.00 0.00 0.00 2.12
1854 1991 2.232208 GAGTTGAGGCCAAATTTCAGGG 59.768 50.000 5.01 0.00 33.49 4.45
1855 1992 2.095059 CGAGTTGAGGCCAAATTTCAGG 60.095 50.000 5.01 0.00 33.49 3.86
1856 1993 2.554032 ACGAGTTGAGGCCAAATTTCAG 59.446 45.455 5.01 0.00 33.49 3.02
1891 2028 1.331756 GAAGCTAATCACATGCCGTGG 59.668 52.381 3.76 0.00 46.36 4.94
1929 2069 3.956199 CAATGGAAAGTATGCATGGACCT 59.044 43.478 10.16 0.00 39.46 3.85
1938 2078 8.562892 GTCATGGACTAATCAATGGAAAGTATG 58.437 37.037 0.00 0.00 36.94 2.39
2073 2215 1.271379 ACATGCATGTCAACTTGGCAG 59.729 47.619 26.61 0.00 34.38 4.85
2121 2266 4.693283 CTTGGTGAAGATCATTAGCCGTA 58.307 43.478 0.00 0.00 0.00 4.02
2123 2268 2.289002 GCTTGGTGAAGATCATTAGCCG 59.711 50.000 0.00 0.00 0.00 5.52
2164 2310 2.200092 GCCCCAACTTGGACCCAA 59.800 61.111 9.61 1.11 40.96 4.12
2165 2311 4.278513 CGCCCCAACTTGGACCCA 62.279 66.667 9.61 0.00 40.96 4.51
2179 2325 1.675641 ATTCCCTGACACAAGCGCC 60.676 57.895 2.29 0.00 0.00 6.53
2263 2409 4.038162 ACACGCTAGAGAACTTCTGAACTT 59.962 41.667 0.00 0.00 36.61 2.66
2264 2410 3.570550 ACACGCTAGAGAACTTCTGAACT 59.429 43.478 0.00 0.00 36.61 3.01
2265 2411 3.903360 ACACGCTAGAGAACTTCTGAAC 58.097 45.455 0.00 0.00 36.61 3.18
2266 2412 4.585955 AACACGCTAGAGAACTTCTGAA 57.414 40.909 0.00 0.00 36.61 3.02
2267 2413 4.585955 AAACACGCTAGAGAACTTCTGA 57.414 40.909 0.00 0.00 36.61 3.27
2268 2414 6.809196 AGAATAAACACGCTAGAGAACTTCTG 59.191 38.462 0.00 0.00 36.61 3.02
2269 2415 6.809196 CAGAATAAACACGCTAGAGAACTTCT 59.191 38.462 0.00 0.00 40.06 2.85
2270 2416 6.586844 ACAGAATAAACACGCTAGAGAACTTC 59.413 38.462 0.00 0.00 0.00 3.01
2316 2587 5.688176 TGATTTTTGTAGTGCTTTTTACGGC 59.312 36.000 0.00 0.00 0.00 5.68
2327 2598 6.688385 CAGCGATAACCATGATTTTTGTAGTG 59.312 38.462 0.00 0.00 0.00 2.74
2370 2766 4.580995 TCGTTTTTATTTCAAGGCACCTCA 59.419 37.500 0.00 0.00 0.00 3.86
2395 2791 2.481854 CACATGCTGCTTAGCCTCTAG 58.518 52.381 0.29 0.00 0.00 2.43
2402 2802 2.417933 GAGTCAACCACATGCTGCTTAG 59.582 50.000 0.00 0.00 0.00 2.18
2428 2828 2.033049 GCTTCTGCATGCATAGAACAGG 59.967 50.000 22.97 11.23 39.41 4.00
2853 3253 3.138798 TACTCGGCCCTCGACTGC 61.139 66.667 0.00 0.00 43.74 4.40
2992 3394 1.369091 GACATCACCTCCGCGCAAAT 61.369 55.000 8.75 0.00 0.00 2.32
3176 3578 1.569493 CGACGTTGTCCTTGCCAAG 59.431 57.895 0.00 0.00 0.00 3.61
3178 3580 2.970324 GCGACGTTGTCCTTGCCA 60.970 61.111 4.37 0.00 0.00 4.92
3215 3617 2.126580 GTAGCCGTCGTCGTGCTT 60.127 61.111 18.73 7.57 41.24 3.91
3256 3658 4.509616 TGGACGAACCCATGTACATTAAG 58.490 43.478 5.37 0.19 38.00 1.85
3257 3659 4.554960 TGGACGAACCCATGTACATTAA 57.445 40.909 5.37 0.00 38.00 1.40
3258 3660 4.764050 ATGGACGAACCCATGTACATTA 57.236 40.909 5.37 0.00 44.77 1.90
3268 3682 0.529992 GGATCGACATGGACGAACCC 60.530 60.000 22.91 19.50 43.44 4.11
3308 3722 1.374568 TGGCGAGCCAGTGAAATCA 59.625 52.632 13.49 0.00 41.89 2.57
3337 3751 7.459486 CGAAACCAACAGAGATTAATTCAGAG 58.541 38.462 0.00 0.00 0.00 3.35
3347 3761 1.813513 CAGGCGAAACCAACAGAGAT 58.186 50.000 0.00 0.00 43.14 2.75
3446 3864 9.744468 ACCTTCTTAAATTCACACAATTTACAC 57.256 29.630 0.07 0.00 33.35 2.90
3462 3880 7.989741 TGAATCAATGGCAAAAACCTTCTTAAA 59.010 29.630 0.00 0.00 0.00 1.52
3646 4064 2.504175 AGTATTGCACTACAATCCCCGT 59.496 45.455 15.68 0.00 46.28 5.28
3671 4089 6.905076 CCGAATTGGATTAAACGTAATCAGTG 59.095 38.462 12.00 0.00 45.15 3.66
3739 4157 1.732941 TTCCATGGGTTCGACATTCG 58.267 50.000 13.02 0.00 42.10 3.34
3754 4172 6.833933 TCACTATCTACTAGCAGAACATTCCA 59.166 38.462 0.00 0.00 0.00 3.53
3832 4250 4.713814 TGATCTCTCTCCATACAACTTGCT 59.286 41.667 0.00 0.00 0.00 3.91
3863 4283 8.480643 ACGACACTTATTTTGAAATAGAGGAG 57.519 34.615 0.00 0.00 32.87 3.69
3873 4293 9.658475 CAACTAAATCAACGACACTTATTTTGA 57.342 29.630 0.00 0.00 0.00 2.69
3925 4345 4.981812 ACTCCTTCGTCCCAAAATAAGTT 58.018 39.130 0.00 0.00 0.00 2.66
3942 4362 5.716979 TGCCCTAGACTATTTCATACTCCT 58.283 41.667 0.00 0.00 0.00 3.69
4022 4737 4.771590 AATAACAGTGCCAACATGACTG 57.228 40.909 0.00 4.70 42.39 3.51
4126 5107 4.335315 GCGATGATAAGAACATTGGTTGGA 59.665 41.667 0.00 0.00 37.36 3.53
4138 5119 3.572682 AGTAATCCCGTGCGATGATAAGA 59.427 43.478 0.00 0.00 0.00 2.10
4143 5124 1.535226 CGAAGTAATCCCGTGCGATGA 60.535 52.381 0.00 0.00 0.00 2.92
4150 5131 2.354403 CCTTCAACCGAAGTAATCCCGT 60.354 50.000 1.86 0.00 46.19 5.28
4163 5144 3.244911 TGGTCTGGAGAAATCCTTCAACC 60.245 47.826 0.00 0.00 34.67 3.77
4180 5161 0.108585 AATGTCCAGTGCGTTGGTCT 59.891 50.000 6.23 0.00 39.35 3.85
4193 5174 6.095440 ACCATGAGTGCAGTAATTAAATGTCC 59.905 38.462 0.00 0.00 0.00 4.02
4241 6161 5.345202 CGATGACAATAAGGATTAGTACGGC 59.655 44.000 0.00 0.00 31.76 5.68
4244 6164 6.220930 TGCCGATGACAATAAGGATTAGTAC 58.779 40.000 0.00 0.00 31.76 2.73
4268 6188 2.538449 CGCGTGAAAAGCTATACCGAAT 59.462 45.455 0.00 0.00 39.95 3.34
4275 6195 0.249398 AGGGACGCGTGAAAAGCTAT 59.751 50.000 20.70 0.00 39.95 2.97
4318 6238 3.904339 CAGGTACCTGGTATGCCTTAGAT 59.096 47.826 31.15 0.00 40.17 1.98
4321 6241 1.766496 GCAGGTACCTGGTATGCCTTA 59.234 52.381 36.91 0.00 43.77 2.69
4339 6259 4.221482 TCTTTCTCACTCTAATGCTCAGCA 59.779 41.667 0.00 0.00 44.86 4.41
4341 6261 5.718146 TGTCTTTCTCACTCTAATGCTCAG 58.282 41.667 0.00 0.00 0.00 3.35
4353 6273 8.375465 CAACAAATTTGTCTTTGTCTTTCTCAC 58.625 33.333 23.47 0.00 45.98 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.