Multiple sequence alignment - TraesCS7D01G257300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G257300 chr7D 100.000 6387 0 0 1 6387 232810535 232816921 0.000000e+00 11795.0
1 TraesCS7D01G257300 chr7D 95.722 187 8 0 4576 4762 243814752 243814938 1.040000e-77 302.0
2 TraesCS7D01G257300 chr7D 100.000 48 0 0 6167 6214 232816653 232816700 8.820000e-14 89.8
3 TraesCS7D01G257300 chr7D 100.000 48 0 0 6119 6166 232816701 232816748 8.820000e-14 89.8
4 TraesCS7D01G257300 chr7B 91.848 3398 158 44 2542 5908 203742106 203745415 0.000000e+00 4630.0
5 TraesCS7D01G257300 chr7B 95.033 765 33 4 555 1317 203740234 203740995 0.000000e+00 1197.0
6 TraesCS7D01G257300 chr7B 92.253 697 41 9 1813 2507 203741421 203742106 0.000000e+00 976.0
7 TraesCS7D01G257300 chr7B 90.296 371 31 5 1424 1790 203741056 203741425 1.250000e-131 481.0
8 TraesCS7D01G257300 chr7B 93.173 249 17 0 1 249 203739359 203739607 3.640000e-97 366.0
9 TraesCS7D01G257300 chr7B 93.396 212 10 3 5937 6147 203745955 203746163 1.730000e-80 311.0
10 TraesCS7D01G257300 chr7B 91.304 69 2 2 6319 6387 203851445 203851509 2.450000e-14 91.6
11 TraesCS7D01G257300 chr7B 90.566 53 0 3 6179 6230 203852237 203852285 1.490000e-06 65.8
12 TraesCS7D01G257300 chr7B 100.000 33 0 0 6131 6163 203852237 203852269 1.920000e-05 62.1
13 TraesCS7D01G257300 chr7B 100.000 29 0 0 6167 6195 203746135 203746163 3.000000e-03 54.7
14 TraesCS7D01G257300 chr7A 94.083 1859 67 14 3878 5734 246266759 246264942 0.000000e+00 2784.0
15 TraesCS7D01G257300 chr7A 91.980 1970 120 16 1 1942 246271618 246269659 0.000000e+00 2728.0
16 TraesCS7D01G257300 chr7A 92.853 1861 72 21 2059 3878 246269528 246267688 0.000000e+00 2643.0
17 TraesCS7D01G257300 chr7A 84.416 154 7 5 5863 6014 246259548 246259410 1.120000e-27 135.0
18 TraesCS7D01G257300 chr7A 91.892 74 6 0 6249 6322 365077228 365077155 3.150000e-18 104.0
19 TraesCS7D01G257300 chr7A 97.368 38 1 0 6350 6387 246259331 246259294 1.490000e-06 65.8
20 TraesCS7D01G257300 chr5A 81.664 529 91 6 1 525 531898188 531897662 9.830000e-118 435.0
21 TraesCS7D01G257300 chr1A 84.177 158 21 3 371 524 590554016 590553859 3.990000e-32 150.0
22 TraesCS7D01G257300 chr2D 90.179 112 9 2 1087 1197 345626689 345626579 1.860000e-30 145.0
23 TraesCS7D01G257300 chr2D 89.610 77 4 3 6246 6322 300882834 300882906 1.900000e-15 95.3
24 TraesCS7D01G257300 chr2A 89.286 112 10 2 1087 1197 458051223 458051333 8.630000e-29 139.0
25 TraesCS7D01G257300 chr5B 90.909 77 3 3 6249 6325 524362748 524362676 4.070000e-17 100.0
26 TraesCS7D01G257300 chr5B 89.610 77 4 3 6246 6322 485490333 485490405 1.900000e-15 95.3
27 TraesCS7D01G257300 chr1B 90.909 77 3 3 6249 6325 19030053 19029981 4.070000e-17 100.0
28 TraesCS7D01G257300 chr3B 88.889 81 5 1 6246 6326 196415728 196415804 5.270000e-16 97.1
29 TraesCS7D01G257300 chr3B 87.500 80 6 2 6249 6328 749683528 749683603 8.820000e-14 89.8
30 TraesCS7D01G257300 chr2B 92.647 68 4 1 392 458 55203867 55203800 5.270000e-16 97.1
31 TraesCS7D01G257300 chr2B 88.750 80 5 3 6246 6325 335380528 335380603 1.900000e-15 95.3
32 TraesCS7D01G257300 chr6B 88.750 80 5 3 6246 6325 132046151 132046226 1.900000e-15 95.3
33 TraesCS7D01G257300 chr3A 77.241 145 28 4 2017 2158 24682631 24682773 5.310000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G257300 chr7D 232810535 232816921 6386 False 3991.533333 11795 100.000000 1 6387 3 chr7D.!!$F2 6386
1 TraesCS7D01G257300 chr7B 203739359 203746163 6804 False 1145.100000 4630 93.714143 1 6195 7 chr7B.!!$F1 6194
2 TraesCS7D01G257300 chr7A 246264942 246271618 6676 True 2718.333333 2784 92.972000 1 5734 3 chr7A.!!$R3 5733
3 TraesCS7D01G257300 chr5A 531897662 531898188 526 True 435.000000 435 81.664000 1 525 1 chr5A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 214 0.320334 TTTTGTCTCGGCATCAGCGA 60.320 50.000 0.00 0.00 43.41 4.93 F
1439 1811 0.615331 TCTGGAATCAGTGAGGTGCC 59.385 55.000 0.00 0.00 41.59 5.01 F
1451 1824 1.152546 AGGTGCCTTTTGGTGGGAC 60.153 57.895 0.00 0.00 43.82 4.46 F
2443 2945 1.006688 CCGTGACCGTGATGACACA 60.007 57.895 0.00 0.00 46.20 3.72 F
2709 3249 0.470766 TGTGCTAAACAACTCCCCGT 59.529 50.000 0.00 0.00 35.24 5.28 F
3465 4041 0.034756 TCTACACATGCGCAACCTGT 59.965 50.000 17.11 17.98 0.00 4.00 F
4979 6495 0.038310 AGGCTTTGTACAGAAGGGCC 59.962 55.000 15.16 14.80 38.50 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1861 0.169009 TGACAGCATGAGAGACGTCG 59.831 55.000 10.46 0.00 39.69 5.12 R
2413 2915 0.321653 GGTCACGGCTGGAGTCAAAT 60.322 55.000 0.00 0.00 0.00 2.32 R
2671 3211 0.539669 ACAAGCACACTAAAGGCCCC 60.540 55.000 0.00 0.00 0.00 5.80 R
3456 4032 1.003545 CAACACTCTCAACAGGTTGCG 60.004 52.381 7.28 1.58 40.24 4.85 R
4528 6036 0.039618 TGAACAAGGCATTCCCCTCC 59.960 55.000 0.00 0.00 32.93 4.30 R
5107 6624 0.327924 ATCAGATTGTGGTTCCCGCA 59.672 50.000 0.00 0.00 42.73 5.69 R
6219 8252 0.035439 CACGGGGGAGTAGCATTGTT 60.035 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.898920 ATCTCCAGTGGGCATTGGCG 62.899 60.000 9.92 0.00 42.47 5.69
135 137 4.289527 GCTGAAGCATTTGGATTGCATCC 61.290 47.826 7.90 7.90 44.63 3.51
193 195 7.598759 AGAACCATATTTCTACACGGATAGT 57.401 36.000 0.00 0.00 33.89 2.12
201 203 7.829378 ATTTCTACACGGATAGTTTTGTCTC 57.171 36.000 0.00 0.00 0.00 3.36
208 210 3.531538 GGATAGTTTTGTCTCGGCATCA 58.468 45.455 0.00 0.00 0.00 3.07
212 214 0.320334 TTTTGTCTCGGCATCAGCGA 60.320 50.000 0.00 0.00 43.41 4.93
224 226 1.291877 ATCAGCGACAAAGGCGACAC 61.292 55.000 0.00 0.00 35.00 3.67
290 292 2.186903 CCATTCGGTCGTCCCCAG 59.813 66.667 0.00 0.00 0.00 4.45
388 390 7.520292 GCTCTCAAAATTCAGAATATGCCTCTC 60.520 40.741 0.00 0.00 0.00 3.20
459 465 5.048782 TGTTATTTCCATGTCAAGTGTGAGC 60.049 40.000 0.00 0.00 33.27 4.26
460 466 2.636647 TTCCATGTCAAGTGTGAGCA 57.363 45.000 0.00 0.00 33.27 4.26
483 489 6.036517 GCACATTCACACTCCTCTATGTAAAG 59.963 42.308 0.00 0.00 0.00 1.85
622 984 9.074576 GGTCTTTCTAAAAGGTCCTTTGAATTA 57.925 33.333 17.77 5.58 33.64 1.40
668 1031 5.495926 AATCCTACAATATGGAGAGGCTG 57.504 43.478 0.00 0.00 35.63 4.85
697 1060 1.256812 AGCTTTAAACGCATGGCCTT 58.743 45.000 3.32 0.00 0.00 4.35
724 1087 5.348451 CGTGGGGATTTGAATTTGATGAAAC 59.652 40.000 0.00 0.00 0.00 2.78
730 1093 7.812669 GGGATTTGAATTTGATGAAACGTAACT 59.187 33.333 0.00 0.00 0.00 2.24
747 1110 4.913345 CGTAACTACGTGATCACACTCAAA 59.087 41.667 24.93 3.92 44.13 2.69
758 1121 4.021102 TCACACTCAAAAGGGAGGATTC 57.979 45.455 0.00 0.00 39.27 2.52
886 1250 1.971149 AACCCTGACCCTCATCATCA 58.029 50.000 0.00 0.00 0.00 3.07
984 1348 3.077359 CCAAGACACAAACCTCAGATCC 58.923 50.000 0.00 0.00 0.00 3.36
1239 1603 3.616956 TTCCTCTCAAATCGCAGATGT 57.383 42.857 0.00 0.00 45.12 3.06
1269 1633 2.359900 GCAGTTCGATCCAATCCTTGT 58.640 47.619 0.00 0.00 0.00 3.16
1284 1648 3.109151 TCCTTGTCCCGCTTTAGGATTA 58.891 45.455 0.00 0.00 35.38 1.75
1334 1698 7.175119 AGCTAGTGGACAAATTAGGAGAAAAAC 59.825 37.037 0.00 0.00 0.00 2.43
1350 1714 6.698766 GGAGAAAAACTTGTACGAGTAGACAA 59.301 38.462 16.29 0.00 34.49 3.18
1371 1735 4.098055 ACTTGTCTCACGCTGTATAGTG 57.902 45.455 0.00 0.00 40.29 2.74
1439 1811 0.615331 TCTGGAATCAGTGAGGTGCC 59.385 55.000 0.00 0.00 41.59 5.01
1451 1824 1.152546 AGGTGCCTTTTGGTGGGAC 60.153 57.895 0.00 0.00 43.82 4.46
1488 1861 7.094377 TGGTGAAACTAGGAGAAAATTGCATAC 60.094 37.037 0.00 0.00 36.74 2.39
1492 1865 4.804139 ACTAGGAGAAAATTGCATACGACG 59.196 41.667 0.00 0.00 0.00 5.12
1548 1921 4.630894 TTTTGTGACATGGTCTGTGAAC 57.369 40.909 0.00 0.00 38.54 3.18
1603 1984 5.199024 TGCGTAGTTAGTGGTGAAACTAA 57.801 39.130 0.00 0.00 39.28 2.24
1605 1986 5.221303 TGCGTAGTTAGTGGTGAAACTAAGT 60.221 40.000 8.90 8.90 44.62 2.24
1606 1987 6.016360 TGCGTAGTTAGTGGTGAAACTAAGTA 60.016 38.462 7.31 7.31 42.07 2.24
1610 1991 7.357429 AGTTAGTGGTGAAACTAAGTACAGT 57.643 36.000 0.00 0.00 42.07 3.55
1625 2006 8.033626 ACTAAGTACAGTAGTAAATTGCAGACC 58.966 37.037 7.32 0.00 29.89 3.85
1685 2067 5.991328 TTCTGTGACATTGTCTGAAGTTC 57.009 39.130 17.26 0.00 33.15 3.01
1797 2189 4.994852 TGCTGTGGAAAGTGTACTTATGAC 59.005 41.667 0.00 0.00 34.61 3.06
1837 2229 5.220359 CGGATAGCGCTTGAATAATGAGATG 60.220 44.000 18.68 0.00 0.00 2.90
1885 2277 8.870116 GGTGCTCATTAGGGGAATTTATTATTT 58.130 33.333 0.00 0.00 0.00 1.40
1918 2310 5.682943 TGCTGTGTTACTTATTGTTCCAC 57.317 39.130 0.00 0.00 0.00 4.02
1987 2484 5.741011 TGGATCCAAAATAGACTGGTACAC 58.259 41.667 13.46 0.00 34.11 2.90
1989 2486 4.877378 TCCAAAATAGACTGGTACACGT 57.123 40.909 0.00 0.00 34.11 4.49
1996 2493 3.530265 AGACTGGTACACGTTCACAAA 57.470 42.857 0.00 0.00 0.00 2.83
2001 2498 2.678836 TGGTACACGTTCACAAACTTGG 59.321 45.455 0.00 0.00 38.57 3.61
2002 2499 2.937799 GGTACACGTTCACAAACTTGGA 59.062 45.455 0.00 0.00 38.57 3.53
2003 2500 3.374678 GGTACACGTTCACAAACTTGGAA 59.625 43.478 0.00 0.00 38.57 3.53
2178 2675 6.591448 GCAGGGATCTTTTTCAAAATTACCAG 59.409 38.462 0.00 0.00 0.00 4.00
2189 2686 8.754991 TTTCAAAATTACCAGAAGTTACCTCA 57.245 30.769 0.00 0.00 0.00 3.86
2216 2714 1.715785 TGGATGCAGATCGGATGGTA 58.284 50.000 0.00 0.00 0.00 3.25
2239 2737 2.080286 AAGGACCGATGACAGAAACG 57.920 50.000 0.00 0.00 0.00 3.60
2246 2744 1.731709 CGATGACAGAAACGCCATCAA 59.268 47.619 0.00 0.00 36.20 2.57
2264 2762 6.381801 CCATCAACACCAACTGAGTTTTATC 58.618 40.000 0.00 0.00 0.00 1.75
2268 2766 6.826231 TCAACACCAACTGAGTTTTATCTGAA 59.174 34.615 0.00 0.00 0.00 3.02
2332 2834 1.487976 TCATCCTGTTGGCTGAGGATC 59.512 52.381 8.89 0.00 44.44 3.36
2345 2847 6.322931 TGGCTGAGGATCTGGATAAGTAATA 58.677 40.000 0.00 0.00 34.29 0.98
2360 2862 9.502091 GGATAAGTAATATTTGGCTGATGTACA 57.498 33.333 0.00 0.00 0.00 2.90
2431 2933 1.523758 AATTTGACTCCAGCCGTGAC 58.476 50.000 0.00 0.00 0.00 3.67
2443 2945 1.006688 CCGTGACCGTGATGACACA 60.007 57.895 0.00 0.00 46.20 3.72
2521 3055 7.915293 ACATACATGTATTCTCGTTTTTGGA 57.085 32.000 15.85 0.00 39.68 3.53
2522 3056 8.506168 ACATACATGTATTCTCGTTTTTGGAT 57.494 30.769 15.85 0.00 39.68 3.41
2523 3057 8.397906 ACATACATGTATTCTCGTTTTTGGATG 58.602 33.333 15.85 4.29 39.68 3.51
2524 3058 8.611757 CATACATGTATTCTCGTTTTTGGATGA 58.388 33.333 15.85 0.00 0.00 2.92
2525 3059 7.447374 ACATGTATTCTCGTTTTTGGATGAA 57.553 32.000 0.00 0.00 0.00 2.57
2526 3060 7.881142 ACATGTATTCTCGTTTTTGGATGAAA 58.119 30.769 0.00 0.00 0.00 2.69
2527 3061 8.023128 ACATGTATTCTCGTTTTTGGATGAAAG 58.977 33.333 0.00 0.00 0.00 2.62
2528 3062 6.908825 TGTATTCTCGTTTTTGGATGAAAGG 58.091 36.000 0.00 0.00 0.00 3.11
2529 3063 6.488683 TGTATTCTCGTTTTTGGATGAAAGGT 59.511 34.615 0.00 0.00 0.00 3.50
2530 3064 5.432885 TTCTCGTTTTTGGATGAAAGGTC 57.567 39.130 0.00 0.00 0.00 3.85
2531 3065 4.714632 TCTCGTTTTTGGATGAAAGGTCT 58.285 39.130 0.00 0.00 0.00 3.85
2532 3066 5.130350 TCTCGTTTTTGGATGAAAGGTCTT 58.870 37.500 0.00 0.00 0.00 3.01
2533 3067 5.008613 TCTCGTTTTTGGATGAAAGGTCTTG 59.991 40.000 0.00 0.00 0.00 3.02
2534 3068 4.642885 TCGTTTTTGGATGAAAGGTCTTGT 59.357 37.500 0.00 0.00 0.00 3.16
2535 3069 5.823570 TCGTTTTTGGATGAAAGGTCTTGTA 59.176 36.000 0.00 0.00 0.00 2.41
2536 3070 6.319152 TCGTTTTTGGATGAAAGGTCTTGTAA 59.681 34.615 0.00 0.00 0.00 2.41
2537 3071 6.975772 CGTTTTTGGATGAAAGGTCTTGTAAA 59.024 34.615 0.00 0.00 0.00 2.01
2538 3072 7.043656 CGTTTTTGGATGAAAGGTCTTGTAAAC 60.044 37.037 0.00 0.00 0.00 2.01
2539 3073 5.682943 TTGGATGAAAGGTCTTGTAAACG 57.317 39.130 0.00 0.00 0.00 3.60
2540 3074 4.963373 TGGATGAAAGGTCTTGTAAACGA 58.037 39.130 0.00 0.00 0.00 3.85
2541 3075 5.556915 TGGATGAAAGGTCTTGTAAACGAT 58.443 37.500 0.00 0.00 0.00 3.73
2671 3211 4.869297 TCATTTGACAGGCAAGTTTGTTTG 59.131 37.500 0.00 0.00 37.87 2.93
2681 3221 3.727726 CAAGTTTGTTTGGGGCCTTTAG 58.272 45.455 0.84 0.00 0.00 1.85
2704 3244 3.181501 TGTGCTTGTGTGCTAAACAACTC 60.182 43.478 0.00 0.00 41.57 3.01
2709 3249 0.470766 TGTGCTAAACAACTCCCCGT 59.529 50.000 0.00 0.00 35.24 5.28
2725 3265 2.083774 CCCGTGAGCATTTGAGCTTTA 58.916 47.619 0.00 0.00 46.75 1.85
2738 3278 6.384258 TTTGAGCTTTAGTAATGTGCACAA 57.616 33.333 25.72 5.14 33.82 3.33
2740 3280 4.455533 TGAGCTTTAGTAATGTGCACAAGG 59.544 41.667 25.72 7.70 0.00 3.61
2741 3281 3.191371 AGCTTTAGTAATGTGCACAAGGC 59.809 43.478 25.72 17.67 45.13 4.35
2742 3282 3.673323 GCTTTAGTAATGTGCACAAGGCC 60.673 47.826 25.72 12.01 43.89 5.19
2805 3345 1.800805 AAGTTGCTGATGACCGACTG 58.199 50.000 0.00 0.00 0.00 3.51
2932 3488 2.832643 ATGCTCCATGATGTTGGGAA 57.167 45.000 0.00 0.00 37.37 3.97
2933 3489 1.838112 TGCTCCATGATGTTGGGAAC 58.162 50.000 0.00 0.00 37.37 3.62
2934 3490 1.355381 TGCTCCATGATGTTGGGAACT 59.645 47.619 0.00 0.00 37.37 3.01
2935 3491 2.225091 TGCTCCATGATGTTGGGAACTT 60.225 45.455 0.00 0.00 37.37 2.66
2936 3492 2.165030 GCTCCATGATGTTGGGAACTTG 59.835 50.000 0.00 0.00 37.37 3.16
2937 3493 2.756760 CTCCATGATGTTGGGAACTTGG 59.243 50.000 0.00 0.00 37.37 3.61
2938 3494 1.826720 CCATGATGTTGGGAACTTGGG 59.173 52.381 0.00 0.00 32.80 4.12
2939 3495 2.557229 CCATGATGTTGGGAACTTGGGA 60.557 50.000 0.00 0.00 32.80 4.37
2961 3517 6.095440 GGGATTGCACATTCTAGTGTATGTTT 59.905 38.462 0.00 0.00 41.52 2.83
3332 3894 9.616156 TTATTTGTGTAACTGACCTTTCTTGTA 57.384 29.630 0.00 0.00 38.04 2.41
3336 3898 7.051623 TGTGTAACTGACCTTTCTTGTATTGT 58.948 34.615 0.00 0.00 38.04 2.71
3337 3899 8.205512 TGTGTAACTGACCTTTCTTGTATTGTA 58.794 33.333 0.00 0.00 38.04 2.41
3456 4032 1.135139 TCCGCTCTTCTCTACACATGC 59.865 52.381 0.00 0.00 0.00 4.06
3465 4041 0.034756 TCTACACATGCGCAACCTGT 59.965 50.000 17.11 17.98 0.00 4.00
3618 4194 3.435671 ACAGTGTAAGCTTATTTGACGCC 59.564 43.478 9.88 0.00 0.00 5.68
3636 4212 2.416747 GCCACCTTCCTTTGCATTTTC 58.583 47.619 0.00 0.00 0.00 2.29
3637 4213 2.871637 GCCACCTTCCTTTGCATTTTCC 60.872 50.000 0.00 0.00 0.00 3.13
3646 4222 3.072915 CCTTTGCATTTTCCCCCTTTTCT 59.927 43.478 0.00 0.00 0.00 2.52
3811 4387 8.531362 AAATAGGGGATGATAAGAAGATCCTT 57.469 34.615 0.00 0.00 36.62 3.36
3835 4411 0.610687 AAGTTCTCAAGGAGGGCGAG 59.389 55.000 0.00 0.00 0.00 5.03
3938 5443 2.420022 GCACCGCTGTTTGAGTATGAAT 59.580 45.455 0.00 0.00 0.00 2.57
3940 5445 4.406069 CACCGCTGTTTGAGTATGAATTG 58.594 43.478 0.00 0.00 0.00 2.32
4004 5510 8.352201 TCATTGACAGTCAAAATAACTGGAAAG 58.648 33.333 19.92 0.00 46.73 2.62
4103 5609 7.977293 GGTACCTTTTCTCTTTGCTTTTGTTTA 59.023 33.333 4.06 0.00 0.00 2.01
4159 5667 4.759782 ACTCCACTGTTATACTGTGATGC 58.240 43.478 15.57 0.00 46.73 3.91
4208 5716 9.528489 TTGGTTTATACTTTATTTTCAGAGGCT 57.472 29.630 0.00 0.00 0.00 4.58
4241 5749 3.372206 GTCTTGATCGTGCTGTGCTAAAT 59.628 43.478 0.00 0.00 0.00 1.40
4286 5794 5.130477 TCTTGTCACTATTCCCCCTGAATAC 59.870 44.000 0.00 0.00 41.96 1.89
4399 5907 4.978580 GGTGTGCTTCTCTTTGAAATGTTC 59.021 41.667 0.00 0.00 33.79 3.18
4429 5937 7.088905 GCATTCTTCTGATTCAACATTCTGTT 58.911 34.615 0.00 0.00 42.08 3.16
4457 5965 7.332678 ACAGCCAAAATTATGAGCATCTTTTTC 59.667 33.333 0.00 0.00 34.92 2.29
4528 6036 1.160137 CCGCTGGAACCAAGAAAGAG 58.840 55.000 0.00 0.00 0.00 2.85
4643 6152 8.531146 TGTAAACATATCATCTGTCTTCTCACA 58.469 33.333 0.00 0.00 0.00 3.58
4854 6364 3.305335 CGAAAAGCTTTGCACCAAGGTAT 60.305 43.478 17.48 0.00 0.00 2.73
4914 6430 5.676532 TCGTAACAAACCAAGGTAACATG 57.323 39.130 0.00 0.00 41.41 3.21
4979 6495 0.038310 AGGCTTTGTACAGAAGGGCC 59.962 55.000 15.16 14.80 38.50 5.80
5037 6553 2.930682 GAGGTCGACATTAAGAAGGCAC 59.069 50.000 18.91 0.00 0.00 5.01
5095 6612 7.844779 ACAGAAGGGTCTATTATCTAAACCTCA 59.155 37.037 0.00 0.00 30.85 3.86
5096 6613 8.875168 CAGAAGGGTCTATTATCTAAACCTCAT 58.125 37.037 0.00 0.00 30.85 2.90
5097 6614 9.453830 AGAAGGGTCTATTATCTAAACCTCATT 57.546 33.333 0.00 0.00 29.93 2.57
5098 6615 9.713713 GAAGGGTCTATTATCTAAACCTCATTC 57.286 37.037 0.00 0.00 0.00 2.67
5099 6616 9.453830 AAGGGTCTATTATCTAAACCTCATTCT 57.546 33.333 0.00 0.00 0.00 2.40
5100 6617 9.453830 AGGGTCTATTATCTAAACCTCATTCTT 57.546 33.333 0.00 0.00 0.00 2.52
5144 6661 4.082408 TCTGATACTGACAAGGTTACACCG 60.082 45.833 0.00 0.00 44.90 4.94
5181 6698 0.244994 ACGAAGTCGCTGCTTCTGAT 59.755 50.000 12.95 0.11 44.43 2.90
5329 6846 3.617706 CACATCTGCATCTCTCACTGTTC 59.382 47.826 0.00 0.00 0.00 3.18
5335 6852 5.766670 TCTGCATCTCTCACTGTTCAATTTT 59.233 36.000 0.00 0.00 0.00 1.82
5337 6854 5.532032 TGCATCTCTCACTGTTCAATTTTGA 59.468 36.000 0.00 0.00 34.92 2.69
5360 6877 4.767409 AGTCCACGCAGCAGATATCTAATA 59.233 41.667 4.54 0.00 0.00 0.98
5442 6959 2.032681 GTGCGCTCAAGGAAGGGT 59.967 61.111 9.73 0.00 0.00 4.34
5501 7018 2.751259 CACATGTGCTTGGAGTTGCTAT 59.249 45.455 13.94 0.00 0.00 2.97
5541 7058 2.936919 TTGAGATTGCCAGGCGATAT 57.063 45.000 14.88 11.81 32.11 1.63
5646 7163 7.255104 CCTTAAGAATCTGTGTTGTGTGCTTTA 60.255 37.037 3.36 0.00 0.00 1.85
5650 7167 6.425114 AGAATCTGTGTTGTGTGCTTTACTAG 59.575 38.462 0.00 0.00 0.00 2.57
5651 7168 5.018539 TCTGTGTTGTGTGCTTTACTAGT 57.981 39.130 0.00 0.00 0.00 2.57
5654 7171 2.542178 TGTTGTGTGCTTTACTAGTGCG 59.458 45.455 5.39 0.00 0.00 5.34
5658 7175 1.078708 TGCTTTACTAGTGCGCCCC 60.079 57.895 4.18 0.00 0.00 5.80
5670 7188 2.774799 GCGCCCCTATGCAAGGTTG 61.775 63.158 0.00 6.02 44.90 3.77
5794 7315 6.931840 ACCACACAAGTAAAACAATTGTTTGT 59.068 30.769 31.54 23.53 46.47 2.83
5808 7329 2.100989 TGTTTGTTACGCAGGGGTTTT 58.899 42.857 0.00 0.00 0.00 2.43
5828 7349 7.604545 GGGTTTTCCTATATTGAGATAGCAGTC 59.395 40.741 0.00 0.00 40.46 3.51
5838 7359 5.117406 TGAGATAGCAGTCAGGAGTAGAA 57.883 43.478 0.00 0.00 0.00 2.10
5860 7381 7.349598 AGAATAGTCATTTGCAAGGAAGGTAT 58.650 34.615 0.00 0.00 0.00 2.73
5893 7414 3.808726 TGCAAAGCAACAAAATAGCCTTG 59.191 39.130 0.00 0.00 34.76 3.61
5903 7424 4.284234 ACAAAATAGCCTTGGTGAATGCTT 59.716 37.500 0.00 0.00 35.06 3.91
5908 7429 4.778213 AGCCTTGGTGAATGCTTATAGA 57.222 40.909 0.00 0.00 29.52 1.98
5909 7430 4.712476 AGCCTTGGTGAATGCTTATAGAG 58.288 43.478 0.00 0.00 29.52 2.43
5919 7938 8.144478 GGTGAATGCTTATAGAGTCATAGTCAA 58.856 37.037 0.00 0.00 0.00 3.18
5930 7949 1.406898 TCATAGTCAAGAGCGAGCAGG 59.593 52.381 0.00 0.00 0.00 4.85
5931 7950 0.103937 ATAGTCAAGAGCGAGCAGGC 59.896 55.000 0.00 0.00 0.00 4.85
5951 7970 4.098960 AGGCTGACCAAATAAATGATGCAG 59.901 41.667 0.00 0.00 39.06 4.41
5952 7971 4.365723 GCTGACCAAATAAATGATGCAGG 58.634 43.478 0.00 0.00 0.00 4.85
5953 7972 4.098349 GCTGACCAAATAAATGATGCAGGA 59.902 41.667 0.00 0.00 0.00 3.86
5959 7992 5.593909 CCAAATAAATGATGCAGGAGTACCA 59.406 40.000 0.00 0.00 38.94 3.25
5976 8009 0.329261 CCAGGGATGGTGAGAAGCAA 59.671 55.000 0.00 0.00 0.00 3.91
6018 8051 2.161855 CCAGCACACCAAATTGAGCTA 58.838 47.619 0.00 0.00 40.92 3.32
6039 8072 6.591834 AGCTAGCACACTAAAGAAATGTACTG 59.408 38.462 18.83 0.00 0.00 2.74
6061 8094 5.144100 TGGTACAATTTCACTGGAATGGTT 58.856 37.500 0.00 0.00 31.92 3.67
6079 8112 4.385825 TGGTTGGACATTCTACAGACAAC 58.614 43.478 0.00 0.00 36.82 3.32
6080 8113 4.141597 TGGTTGGACATTCTACAGACAACA 60.142 41.667 0.00 0.00 38.66 3.33
6112 8145 8.898303 ATTAGATGGATGATAGACAGACAGAT 57.102 34.615 0.00 0.00 0.00 2.90
6113 8146 9.987726 ATTAGATGGATGATAGACAGACAGATA 57.012 33.333 0.00 0.00 0.00 1.98
6114 8147 7.943079 AGATGGATGATAGACAGACAGATAG 57.057 40.000 0.00 0.00 0.00 2.08
6147 8180 4.460263 TGCTGACACAATGGTTCTTTAGT 58.540 39.130 0.00 0.00 0.00 2.24
6148 8181 4.887071 TGCTGACACAATGGTTCTTTAGTT 59.113 37.500 0.00 0.00 0.00 2.24
6149 8182 5.359576 TGCTGACACAATGGTTCTTTAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
6150 8183 6.544197 TGCTGACACAATGGTTCTTTAGTTTA 59.456 34.615 0.00 0.00 0.00 2.01
6151 8184 7.067615 TGCTGACACAATGGTTCTTTAGTTTAA 59.932 33.333 0.00 0.00 0.00 1.52
6152 8185 8.082242 GCTGACACAATGGTTCTTTAGTTTAAT 58.918 33.333 0.00 0.00 0.00 1.40
6153 8186 9.965824 CTGACACAATGGTTCTTTAGTTTAATT 57.034 29.630 0.00 0.00 0.00 1.40
6175 8208 4.383850 AGTCATCAGTCATCACTACTGC 57.616 45.455 0.00 0.00 43.30 4.40
6176 8209 4.022603 AGTCATCAGTCATCACTACTGCT 58.977 43.478 0.00 0.00 43.30 4.24
6177 8210 4.111198 GTCATCAGTCATCACTACTGCTG 58.889 47.826 0.00 0.00 43.30 4.41
6178 8211 4.019174 TCATCAGTCATCACTACTGCTGA 58.981 43.478 5.85 5.85 43.87 4.26
6179 8212 3.857549 TCAGTCATCACTACTGCTGAC 57.142 47.619 0.00 0.00 43.30 3.51
6180 8213 3.157087 TCAGTCATCACTACTGCTGACA 58.843 45.455 8.44 0.00 43.29 3.58
6181 8214 3.057245 TCAGTCATCACTACTGCTGACAC 60.057 47.826 8.44 0.00 43.29 3.67
6182 8215 2.893489 AGTCATCACTACTGCTGACACA 59.107 45.455 8.44 0.00 43.29 3.72
6183 8216 3.321968 AGTCATCACTACTGCTGACACAA 59.678 43.478 8.44 0.00 43.29 3.33
6184 8217 4.020751 AGTCATCACTACTGCTGACACAAT 60.021 41.667 8.44 0.00 43.29 2.71
6185 8218 4.092529 GTCATCACTACTGCTGACACAATG 59.907 45.833 0.00 0.00 41.37 2.82
6186 8219 3.044235 TCACTACTGCTGACACAATGG 57.956 47.619 0.00 0.00 0.00 3.16
6187 8220 2.368548 TCACTACTGCTGACACAATGGT 59.631 45.455 0.00 0.00 0.00 3.55
6188 8221 3.141398 CACTACTGCTGACACAATGGTT 58.859 45.455 0.00 0.00 0.00 3.67
6189 8222 3.187227 CACTACTGCTGACACAATGGTTC 59.813 47.826 0.00 0.00 0.00 3.62
6190 8223 2.645838 ACTGCTGACACAATGGTTCT 57.354 45.000 0.00 0.00 0.00 3.01
6191 8224 2.936202 ACTGCTGACACAATGGTTCTT 58.064 42.857 0.00 0.00 0.00 2.52
6192 8225 3.290710 ACTGCTGACACAATGGTTCTTT 58.709 40.909 0.00 0.00 0.00 2.52
6193 8226 4.460263 ACTGCTGACACAATGGTTCTTTA 58.540 39.130 0.00 0.00 0.00 1.85
6194 8227 4.516698 ACTGCTGACACAATGGTTCTTTAG 59.483 41.667 0.00 0.00 0.00 1.85
6195 8228 4.460263 TGCTGACACAATGGTTCTTTAGT 58.540 39.130 0.00 0.00 0.00 2.24
6196 8229 4.887071 TGCTGACACAATGGTTCTTTAGTT 59.113 37.500 0.00 0.00 0.00 2.24
6197 8230 5.359576 TGCTGACACAATGGTTCTTTAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
6198 8231 6.544197 TGCTGACACAATGGTTCTTTAGTTTA 59.456 34.615 0.00 0.00 0.00 2.01
6199 8232 7.067615 TGCTGACACAATGGTTCTTTAGTTTAA 59.932 33.333 0.00 0.00 0.00 1.52
6200 8233 8.082242 GCTGACACAATGGTTCTTTAGTTTAAT 58.918 33.333 0.00 0.00 0.00 1.40
6201 8234 9.965824 CTGACACAATGGTTCTTTAGTTTAATT 57.034 29.630 0.00 0.00 0.00 1.40
6226 8259 7.081526 AGTCATCAGTCAGATAAAACAATGC 57.918 36.000 0.00 0.00 34.43 3.56
6227 8260 6.883217 AGTCATCAGTCAGATAAAACAATGCT 59.117 34.615 0.00 0.00 34.43 3.79
6228 8261 8.043113 AGTCATCAGTCAGATAAAACAATGCTA 58.957 33.333 0.00 0.00 34.43 3.49
6229 8262 8.119226 GTCATCAGTCAGATAAAACAATGCTAC 58.881 37.037 0.00 0.00 34.43 3.58
6230 8263 8.043113 TCATCAGTCAGATAAAACAATGCTACT 58.957 33.333 0.00 0.00 34.43 2.57
6231 8264 7.834068 TCAGTCAGATAAAACAATGCTACTC 57.166 36.000 0.00 0.00 0.00 2.59
6232 8265 6.818644 TCAGTCAGATAAAACAATGCTACTCC 59.181 38.462 0.00 0.00 0.00 3.85
6233 8266 6.037610 CAGTCAGATAAAACAATGCTACTCCC 59.962 42.308 0.00 0.00 0.00 4.30
6234 8267 5.297029 GTCAGATAAAACAATGCTACTCCCC 59.703 44.000 0.00 0.00 0.00 4.81
6235 8268 4.580580 CAGATAAAACAATGCTACTCCCCC 59.419 45.833 0.00 0.00 0.00 5.40
6236 8269 1.834188 AAAACAATGCTACTCCCCCG 58.166 50.000 0.00 0.00 0.00 5.73
6237 8270 0.696501 AAACAATGCTACTCCCCCGT 59.303 50.000 0.00 0.00 0.00 5.28
6238 8271 0.035439 AACAATGCTACTCCCCCGTG 60.035 55.000 0.00 0.00 0.00 4.94
6239 8272 1.819632 CAATGCTACTCCCCCGTGC 60.820 63.158 0.00 0.00 0.00 5.34
6240 8273 1.995626 AATGCTACTCCCCCGTGCT 60.996 57.895 0.00 0.00 0.00 4.40
6241 8274 0.689745 AATGCTACTCCCCCGTGCTA 60.690 55.000 0.00 0.00 0.00 3.49
6242 8275 1.400530 ATGCTACTCCCCCGTGCTAC 61.401 60.000 0.00 0.00 0.00 3.58
6243 8276 1.757340 GCTACTCCCCCGTGCTACT 60.757 63.158 0.00 0.00 0.00 2.57
6244 8277 1.736365 GCTACTCCCCCGTGCTACTC 61.736 65.000 0.00 0.00 0.00 2.59
6245 8278 1.076485 TACTCCCCCGTGCTACTCC 60.076 63.158 0.00 0.00 0.00 3.85
6246 8279 2.578586 TACTCCCCCGTGCTACTCCC 62.579 65.000 0.00 0.00 0.00 4.30
6247 8280 4.791069 TCCCCCGTGCTACTCCCC 62.791 72.222 0.00 0.00 0.00 4.81
6249 8282 3.006728 CCCCGTGCTACTCCCCAA 61.007 66.667 0.00 0.00 0.00 4.12
6250 8283 2.598787 CCCCGTGCTACTCCCCAAA 61.599 63.158 0.00 0.00 0.00 3.28
6251 8284 1.607612 CCCGTGCTACTCCCCAAAT 59.392 57.895 0.00 0.00 0.00 2.32
6252 8285 0.834612 CCCGTGCTACTCCCCAAATA 59.165 55.000 0.00 0.00 0.00 1.40
6253 8286 1.202651 CCCGTGCTACTCCCCAAATAG 60.203 57.143 0.00 0.00 0.00 1.73
6254 8287 1.760613 CCGTGCTACTCCCCAAATAGA 59.239 52.381 0.00 0.00 0.00 1.98
6255 8288 2.368875 CCGTGCTACTCCCCAAATAGAT 59.631 50.000 0.00 0.00 0.00 1.98
6256 8289 3.393800 CGTGCTACTCCCCAAATAGATG 58.606 50.000 0.00 0.00 0.00 2.90
6257 8290 3.069586 CGTGCTACTCCCCAAATAGATGA 59.930 47.826 0.00 0.00 0.00 2.92
6258 8291 4.381411 GTGCTACTCCCCAAATAGATGAC 58.619 47.826 0.00 0.00 0.00 3.06
6259 8292 4.101741 GTGCTACTCCCCAAATAGATGACT 59.898 45.833 0.00 0.00 0.00 3.41
6260 8293 4.345257 TGCTACTCCCCAAATAGATGACTC 59.655 45.833 0.00 0.00 0.00 3.36
6261 8294 4.345257 GCTACTCCCCAAATAGATGACTCA 59.655 45.833 0.00 0.00 0.00 3.41
6262 8295 5.163301 GCTACTCCCCAAATAGATGACTCAA 60.163 44.000 0.00 0.00 0.00 3.02
6263 8296 5.983333 ACTCCCCAAATAGATGACTCAAT 57.017 39.130 0.00 0.00 0.00 2.57
6264 8297 6.332976 ACTCCCCAAATAGATGACTCAATT 57.667 37.500 0.00 0.00 0.00 2.32
6265 8298 6.735556 ACTCCCCAAATAGATGACTCAATTT 58.264 36.000 0.00 0.00 0.00 1.82
6266 8299 7.184862 ACTCCCCAAATAGATGACTCAATTTT 58.815 34.615 0.00 0.00 0.00 1.82
6267 8300 7.123247 ACTCCCCAAATAGATGACTCAATTTTG 59.877 37.037 0.00 0.00 0.00 2.44
6268 8301 6.953520 TCCCCAAATAGATGACTCAATTTTGT 59.046 34.615 0.00 0.00 0.00 2.83
6269 8302 8.112822 TCCCCAAATAGATGACTCAATTTTGTA 58.887 33.333 0.00 0.00 0.00 2.41
6270 8303 8.190784 CCCCAAATAGATGACTCAATTTTGTAC 58.809 37.037 0.00 0.00 0.00 2.90
6271 8304 8.190784 CCCAAATAGATGACTCAATTTTGTACC 58.809 37.037 0.00 0.00 0.00 3.34
6272 8305 8.739039 CCAAATAGATGACTCAATTTTGTACCA 58.261 33.333 0.00 0.00 0.00 3.25
6275 8308 6.241207 AGATGACTCAATTTTGTACCAACG 57.759 37.500 0.00 0.00 0.00 4.10
6276 8309 5.763204 AGATGACTCAATTTTGTACCAACGT 59.237 36.000 0.00 0.00 0.00 3.99
6277 8310 5.821516 TGACTCAATTTTGTACCAACGTT 57.178 34.783 0.00 0.00 0.00 3.99
6278 8311 6.922247 TGACTCAATTTTGTACCAACGTTA 57.078 33.333 0.00 0.00 0.00 3.18
6279 8312 6.950545 TGACTCAATTTTGTACCAACGTTAG 58.049 36.000 0.00 0.00 0.00 2.34
6280 8313 6.539464 TGACTCAATTTTGTACCAACGTTAGT 59.461 34.615 0.00 1.56 0.00 2.24
6281 8314 6.951643 ACTCAATTTTGTACCAACGTTAGTC 58.048 36.000 1.69 0.00 0.00 2.59
6282 8315 6.539464 ACTCAATTTTGTACCAACGTTAGTCA 59.461 34.615 1.69 0.00 0.00 3.41
6283 8316 6.950545 TCAATTTTGTACCAACGTTAGTCAG 58.049 36.000 1.69 0.00 0.00 3.51
6284 8317 6.539464 TCAATTTTGTACCAACGTTAGTCAGT 59.461 34.615 1.69 0.00 0.00 3.41
6285 8318 7.710044 TCAATTTTGTACCAACGTTAGTCAGTA 59.290 33.333 1.69 0.00 0.00 2.74
6286 8319 8.500773 CAATTTTGTACCAACGTTAGTCAGTAT 58.499 33.333 1.69 0.00 0.00 2.12
6287 8320 9.709495 AATTTTGTACCAACGTTAGTCAGTATA 57.291 29.630 1.69 0.00 0.00 1.47
6288 8321 9.709495 ATTTTGTACCAACGTTAGTCAGTATAA 57.291 29.630 1.69 1.99 0.00 0.98
6289 8322 9.539825 TTTTGTACCAACGTTAGTCAGTATAAA 57.460 29.630 1.69 7.33 32.50 1.40
6290 8323 8.746922 TTGTACCAACGTTAGTCAGTATAAAG 57.253 34.615 1.69 0.00 0.00 1.85
6291 8324 7.885297 TGTACCAACGTTAGTCAGTATAAAGT 58.115 34.615 1.69 0.00 0.00 2.66
6292 8325 8.359642 TGTACCAACGTTAGTCAGTATAAAGTT 58.640 33.333 1.69 0.00 35.93 2.66
6293 8326 7.647907 ACCAACGTTAGTCAGTATAAAGTTG 57.352 36.000 0.00 13.82 44.78 3.16
6295 8328 7.057149 CAACGTTAGTCAGTATAAAGTTGGG 57.943 40.000 0.00 0.00 43.13 4.12
6296 8329 6.350629 ACGTTAGTCAGTATAAAGTTGGGT 57.649 37.500 0.00 0.00 0.00 4.51
6297 8330 6.393171 ACGTTAGTCAGTATAAAGTTGGGTC 58.607 40.000 0.00 0.00 0.00 4.46
6298 8331 6.015180 ACGTTAGTCAGTATAAAGTTGGGTCA 60.015 38.462 0.00 0.00 0.00 4.02
6299 8332 7.039882 CGTTAGTCAGTATAAAGTTGGGTCAT 58.960 38.462 0.00 0.00 0.00 3.06
6300 8333 7.222224 CGTTAGTCAGTATAAAGTTGGGTCATC 59.778 40.741 0.00 0.00 0.00 2.92
6301 8334 6.875972 AGTCAGTATAAAGTTGGGTCATCT 57.124 37.500 0.00 0.00 0.00 2.90
6302 8335 7.973048 AGTCAGTATAAAGTTGGGTCATCTA 57.027 36.000 0.00 0.00 0.00 1.98
6303 8336 8.554490 AGTCAGTATAAAGTTGGGTCATCTAT 57.446 34.615 0.00 0.00 0.00 1.98
6304 8337 8.993424 AGTCAGTATAAAGTTGGGTCATCTATT 58.007 33.333 0.00 0.00 0.00 1.73
6305 8338 9.614792 GTCAGTATAAAGTTGGGTCATCTATTT 57.385 33.333 0.00 0.00 0.00 1.40
6312 8345 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
6313 8346 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
6314 8347 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
6315 8348 6.302535 TGGGTCATCTATTTTAGAACGGAA 57.697 37.500 0.00 0.00 38.50 4.30
6316 8349 6.346096 TGGGTCATCTATTTTAGAACGGAAG 58.654 40.000 0.00 0.00 38.50 3.46
6317 8350 5.758784 GGGTCATCTATTTTAGAACGGAAGG 59.241 44.000 0.00 0.00 38.50 3.46
6318 8351 6.407752 GGGTCATCTATTTTAGAACGGAAGGA 60.408 42.308 0.00 0.00 38.50 3.36
6319 8352 6.702282 GGTCATCTATTTTAGAACGGAAGGAG 59.298 42.308 0.00 0.00 38.50 3.69
6320 8353 7.266400 GTCATCTATTTTAGAACGGAAGGAGT 58.734 38.462 0.00 0.00 38.50 3.85
6321 8354 8.411683 GTCATCTATTTTAGAACGGAAGGAGTA 58.588 37.037 0.00 0.00 38.50 2.59
6322 8355 8.411683 TCATCTATTTTAGAACGGAAGGAGTAC 58.588 37.037 0.00 0.00 38.50 2.73
6323 8356 7.951347 TCTATTTTAGAACGGAAGGAGTACT 57.049 36.000 0.00 0.00 0.00 2.73
6324 8357 8.358582 TCTATTTTAGAACGGAAGGAGTACTT 57.641 34.615 0.00 0.00 43.65 2.24
6336 8369 5.845391 AAGGAGTACTTCTGTAGAGATGC 57.155 43.478 3.86 0.00 32.85 3.91
6337 8370 4.211920 AGGAGTACTTCTGTAGAGATGCC 58.788 47.826 1.76 0.00 0.00 4.40
6338 8371 4.079443 AGGAGTACTTCTGTAGAGATGCCT 60.079 45.833 1.76 0.00 0.00 4.75
6339 8372 4.037446 GGAGTACTTCTGTAGAGATGCCTG 59.963 50.000 0.00 0.00 0.00 4.85
6340 8373 4.861196 AGTACTTCTGTAGAGATGCCTGA 58.139 43.478 2.98 0.00 0.00 3.86
6341 8374 5.454062 AGTACTTCTGTAGAGATGCCTGAT 58.546 41.667 2.98 0.00 0.00 2.90
6342 8375 6.606069 AGTACTTCTGTAGAGATGCCTGATA 58.394 40.000 2.98 0.00 0.00 2.15
6343 8376 6.714810 AGTACTTCTGTAGAGATGCCTGATAG 59.285 42.308 2.98 0.00 0.00 2.08
6344 8377 4.832266 ACTTCTGTAGAGATGCCTGATAGG 59.168 45.833 2.98 0.00 38.80 2.57
6356 8389 3.758755 CCTGATAGGCTTACATGCAGA 57.241 47.619 0.00 0.00 34.04 4.26
6357 8390 4.283363 CCTGATAGGCTTACATGCAGAT 57.717 45.455 0.00 0.00 34.04 2.90
6358 8391 4.001652 CCTGATAGGCTTACATGCAGATG 58.998 47.826 0.00 0.00 35.49 2.90
6359 8392 3.405831 TGATAGGCTTACATGCAGATGC 58.594 45.455 0.00 0.00 42.50 3.91
6360 8393 3.072038 TGATAGGCTTACATGCAGATGCT 59.928 43.478 6.35 0.00 42.66 3.79
6361 8394 1.964552 AGGCTTACATGCAGATGCTC 58.035 50.000 6.35 0.00 42.66 4.26
6362 8395 0.950116 GGCTTACATGCAGATGCTCC 59.050 55.000 6.35 0.00 42.66 4.70
6363 8396 1.476471 GGCTTACATGCAGATGCTCCT 60.476 52.381 6.35 0.00 42.66 3.69
6364 8397 2.295885 GCTTACATGCAGATGCTCCTT 58.704 47.619 6.35 0.00 42.66 3.36
6365 8398 2.290093 GCTTACATGCAGATGCTCCTTC 59.710 50.000 6.35 0.00 42.66 3.46
6366 8399 3.806380 CTTACATGCAGATGCTCCTTCT 58.194 45.455 6.35 0.00 42.66 2.85
6367 8400 2.328819 ACATGCAGATGCTCCTTCTC 57.671 50.000 6.35 0.00 42.66 2.87
6368 8401 1.838715 ACATGCAGATGCTCCTTCTCT 59.161 47.619 6.35 0.00 42.66 3.10
6369 8402 2.214347 CATGCAGATGCTCCTTCTCTG 58.786 52.381 6.35 0.00 42.66 3.35
6370 8403 1.565067 TGCAGATGCTCCTTCTCTGA 58.435 50.000 6.35 0.00 38.96 3.27
6371 8404 2.117051 TGCAGATGCTCCTTCTCTGAT 58.883 47.619 6.35 0.00 38.96 2.90
6372 8405 3.303049 TGCAGATGCTCCTTCTCTGATA 58.697 45.455 6.35 0.00 38.96 2.15
6373 8406 3.708121 TGCAGATGCTCCTTCTCTGATAA 59.292 43.478 6.35 0.00 38.96 1.75
6374 8407 4.162888 TGCAGATGCTCCTTCTCTGATAAA 59.837 41.667 6.35 0.00 38.96 1.40
6375 8408 5.163227 TGCAGATGCTCCTTCTCTGATAAAT 60.163 40.000 6.35 0.00 38.96 1.40
6376 8409 5.179742 GCAGATGCTCCTTCTCTGATAAATG 59.820 44.000 3.11 0.00 38.96 2.32
6377 8410 6.289834 CAGATGCTCCTTCTCTGATAAATGT 58.710 40.000 0.00 0.00 38.96 2.71
6378 8411 7.440198 CAGATGCTCCTTCTCTGATAAATGTA 58.560 38.462 0.00 0.00 38.96 2.29
6379 8412 7.384660 CAGATGCTCCTTCTCTGATAAATGTAC 59.615 40.741 0.00 0.00 38.96 2.90
6380 8413 6.544928 TGCTCCTTCTCTGATAAATGTACA 57.455 37.500 0.00 0.00 0.00 2.90
6381 8414 7.129457 TGCTCCTTCTCTGATAAATGTACAT 57.871 36.000 1.41 1.41 0.00 2.29
6382 8415 7.212976 TGCTCCTTCTCTGATAAATGTACATC 58.787 38.462 9.23 0.00 0.00 3.06
6383 8416 7.147672 TGCTCCTTCTCTGATAAATGTACATCA 60.148 37.037 9.23 2.62 0.00 3.07
6384 8417 7.712639 GCTCCTTCTCTGATAAATGTACATCAA 59.287 37.037 9.23 0.40 31.04 2.57
6385 8418 8.948631 TCCTTCTCTGATAAATGTACATCAAC 57.051 34.615 9.23 0.06 31.04 3.18
6386 8419 8.762645 TCCTTCTCTGATAAATGTACATCAACT 58.237 33.333 9.23 0.00 31.04 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.826385 CCTCCAGTTTGGGTGATGAC 58.174 55.000 0.00 0.00 38.32 3.06
135 137 2.481854 CTTCAGCTAGCATGGTAGCAG 58.518 52.381 42.20 37.17 46.81 4.24
193 195 0.320334 TCGCTGATGCCGAGACAAAA 60.320 50.000 0.00 0.00 35.36 2.44
201 203 2.787249 CCTTTGTCGCTGATGCCG 59.213 61.111 0.00 0.00 35.36 5.69
208 210 2.665185 GGTGTCGCCTTTGTCGCT 60.665 61.111 0.00 0.00 0.00 4.93
212 214 0.110486 AAGATGGGTGTCGCCTTTGT 59.890 50.000 1.66 0.00 37.43 2.83
224 226 1.688772 CCTGCATCCTTGAAGATGGG 58.311 55.000 0.00 0.00 43.26 4.00
290 292 0.813821 GTCCTGCTGGAATGGAAAGC 59.186 55.000 14.68 0.00 45.18 3.51
341 343 1.915141 AGTTTTGCCTGATGGTGAGG 58.085 50.000 0.00 0.00 35.27 3.86
381 383 1.618837 GACACCTAACAGTGAGAGGCA 59.381 52.381 13.07 0.00 40.34 4.75
388 390 5.463724 GTCTGAAGAAAGACACCTAACAGTG 59.536 44.000 0.00 0.00 44.98 3.66
423 425 5.789574 TGGAAATAACATCCTACCAAGGT 57.210 39.130 0.00 0.00 44.09 3.50
459 465 7.063898 CACTTTACATAGAGGAGTGTGAATGTG 59.936 40.741 0.00 0.00 34.51 3.21
460 466 7.099764 CACTTTACATAGAGGAGTGTGAATGT 58.900 38.462 0.00 0.00 34.51 2.71
526 535 9.730705 CCTCTTTCCATAATATGAGCTCAAATA 57.269 33.333 22.50 14.05 0.00 1.40
625 987 9.539194 AGGATTTTCTATGAAGTTTGGAGAAAT 57.461 29.630 7.46 0.00 36.36 2.17
643 1006 6.429385 CAGCCTCTCCATATTGTAGGATTTTC 59.571 42.308 0.00 0.00 32.53 2.29
668 1031 2.400735 GCGTTTAAAGCTTGTCTTTCGC 59.599 45.455 0.00 8.83 43.55 4.70
697 1060 2.630098 TCAAATTCAAATCCCCACGCAA 59.370 40.909 0.00 0.00 0.00 4.85
747 1110 3.453353 TCGTAAATTCGGAATCCTCCCTT 59.547 43.478 3.28 0.00 38.71 3.95
758 1121 2.542595 GTGGGTAGCATCGTAAATTCGG 59.457 50.000 0.00 0.00 0.00 4.30
886 1250 2.363147 GAGAGAGCACGAGGGGGT 60.363 66.667 0.00 0.00 0.00 4.95
984 1348 4.127744 ATGGCGTGGGATGGGTGG 62.128 66.667 0.00 0.00 0.00 4.61
1036 1400 1.130054 ATCCCGTCCCCCATCATCAG 61.130 60.000 0.00 0.00 0.00 2.90
1239 1603 1.301322 TCGAACTGCGACATGGCAA 60.301 52.632 0.00 0.00 45.59 4.52
1262 1626 1.580059 TCCTAAAGCGGGACAAGGAT 58.420 50.000 0.00 0.00 31.41 3.24
1269 1633 3.971305 TCCATCTTAATCCTAAAGCGGGA 59.029 43.478 0.00 0.00 37.26 5.14
1284 1648 2.811873 GCACCACTCAACACTCCATCTT 60.812 50.000 0.00 0.00 0.00 2.40
1350 1714 3.506455 ACACTATACAGCGTGAGACAAGT 59.494 43.478 0.00 0.00 35.23 3.16
1371 1735 5.060077 CACAGCATCGATTCAAAATTGACAC 59.940 40.000 0.00 0.00 36.83 3.67
1409 1781 1.205655 TGATTCCAGAGGAGCGAACTG 59.794 52.381 0.00 0.00 31.21 3.16
1439 1811 2.281208 TCCGCGTCCCACCAAAAG 60.281 61.111 4.92 0.00 0.00 2.27
1451 1824 0.788391 GTTTCACCACTAACTCCGCG 59.212 55.000 0.00 0.00 0.00 6.46
1488 1861 0.169009 TGACAGCATGAGAGACGTCG 59.831 55.000 10.46 0.00 39.69 5.12
1492 1865 3.119209 TCACAGATGACAGCATGAGAGAC 60.119 47.826 0.00 0.00 39.69 3.36
1603 1984 5.408356 CGGTCTGCAATTTACTACTGTACT 58.592 41.667 0.00 0.00 0.00 2.73
1605 1986 4.178540 GCGGTCTGCAATTTACTACTGTA 58.821 43.478 0.00 0.00 45.45 2.74
1606 1987 3.000727 GCGGTCTGCAATTTACTACTGT 58.999 45.455 0.00 0.00 45.45 3.55
1607 1988 3.658351 GCGGTCTGCAATTTACTACTG 57.342 47.619 0.00 0.00 45.45 2.74
1685 2067 9.836076 CTAGCATAATGTCACATAAATGATTGG 57.164 33.333 14.47 4.40 0.00 3.16
1852 2244 1.760613 CCCTAATGAGCACCTCCGTTA 59.239 52.381 0.00 0.00 0.00 3.18
1855 2247 1.048724 TCCCCTAATGAGCACCTCCG 61.049 60.000 0.00 0.00 0.00 4.63
1859 2251 8.422577 AATAATAAATTCCCCTAATGAGCACC 57.577 34.615 0.00 0.00 0.00 5.01
1885 2277 0.531657 AACACAGCAGCAACAGCAAA 59.468 45.000 0.00 0.00 0.00 3.68
1918 2310 6.528423 GCTAGTATACATAATCTGTTCAGGCG 59.472 42.308 5.50 0.00 39.39 5.52
2239 2737 1.609208 ACTCAGTTGGTGTTGATGGC 58.391 50.000 0.00 0.00 0.00 4.40
2246 2744 6.772716 ACATTCAGATAAAACTCAGTTGGTGT 59.227 34.615 0.00 0.00 0.00 4.16
2332 2834 8.627208 ACATCAGCCAAATATTACTTATCCAG 57.373 34.615 0.00 0.00 0.00 3.86
2345 2847 5.726980 ACACAATTGTACATCAGCCAAAT 57.273 34.783 11.53 0.00 32.60 2.32
2413 2915 0.321653 GGTCACGGCTGGAGTCAAAT 60.322 55.000 0.00 0.00 0.00 2.32
2431 2933 3.498018 TGAACTTGAATGTGTCATCACGG 59.502 43.478 0.00 0.00 46.49 4.94
2443 2945 3.228188 TGTCCCAGCTTGAACTTGAAT 57.772 42.857 0.00 0.00 0.00 2.57
2507 3041 5.770162 AGACCTTTCATCCAAAAACGAGAAT 59.230 36.000 0.00 0.00 0.00 2.40
2508 3042 5.130350 AGACCTTTCATCCAAAAACGAGAA 58.870 37.500 0.00 0.00 0.00 2.87
2509 3043 4.714632 AGACCTTTCATCCAAAAACGAGA 58.285 39.130 0.00 0.00 0.00 4.04
2510 3044 5.215160 CAAGACCTTTCATCCAAAAACGAG 58.785 41.667 0.00 0.00 0.00 4.18
2511 3045 4.642885 ACAAGACCTTTCATCCAAAAACGA 59.357 37.500 0.00 0.00 0.00 3.85
2512 3046 4.932146 ACAAGACCTTTCATCCAAAAACG 58.068 39.130 0.00 0.00 0.00 3.60
2513 3047 7.043656 CGTTTACAAGACCTTTCATCCAAAAAC 60.044 37.037 0.00 0.00 0.00 2.43
2514 3048 6.975772 CGTTTACAAGACCTTTCATCCAAAAA 59.024 34.615 0.00 0.00 0.00 1.94
2515 3049 6.319152 TCGTTTACAAGACCTTTCATCCAAAA 59.681 34.615 0.00 0.00 0.00 2.44
2516 3050 5.823570 TCGTTTACAAGACCTTTCATCCAAA 59.176 36.000 0.00 0.00 0.00 3.28
2517 3051 5.369833 TCGTTTACAAGACCTTTCATCCAA 58.630 37.500 0.00 0.00 0.00 3.53
2518 3052 4.963373 TCGTTTACAAGACCTTTCATCCA 58.037 39.130 0.00 0.00 0.00 3.41
2519 3053 6.496338 AATCGTTTACAAGACCTTTCATCC 57.504 37.500 0.00 0.00 0.00 3.51
2520 3054 7.581476 TCAAATCGTTTACAAGACCTTTCATC 58.419 34.615 0.00 0.00 0.00 2.92
2521 3055 7.504924 TCAAATCGTTTACAAGACCTTTCAT 57.495 32.000 0.00 0.00 0.00 2.57
2522 3056 6.928979 TCAAATCGTTTACAAGACCTTTCA 57.071 33.333 0.00 0.00 0.00 2.69
2523 3057 7.860872 ACAATCAAATCGTTTACAAGACCTTTC 59.139 33.333 0.00 0.00 0.00 2.62
2524 3058 7.647715 CACAATCAAATCGTTTACAAGACCTTT 59.352 33.333 0.00 0.00 0.00 3.11
2525 3059 7.012894 TCACAATCAAATCGTTTACAAGACCTT 59.987 33.333 0.00 0.00 0.00 3.50
2526 3060 6.485313 TCACAATCAAATCGTTTACAAGACCT 59.515 34.615 0.00 0.00 0.00 3.85
2527 3061 6.664515 TCACAATCAAATCGTTTACAAGACC 58.335 36.000 0.00 0.00 0.00 3.85
2528 3062 7.642194 TGTTCACAATCAAATCGTTTACAAGAC 59.358 33.333 0.00 0.00 0.00 3.01
2529 3063 7.698628 TGTTCACAATCAAATCGTTTACAAGA 58.301 30.769 0.00 0.00 0.00 3.02
2530 3064 7.643764 ACTGTTCACAATCAAATCGTTTACAAG 59.356 33.333 0.00 0.00 0.00 3.16
2531 3065 7.430793 CACTGTTCACAATCAAATCGTTTACAA 59.569 33.333 0.00 0.00 0.00 2.41
2532 3066 6.909895 CACTGTTCACAATCAAATCGTTTACA 59.090 34.615 0.00 0.00 0.00 2.41
2533 3067 6.910433 ACACTGTTCACAATCAAATCGTTTAC 59.090 34.615 0.00 0.00 0.00 2.01
2534 3068 6.909895 CACACTGTTCACAATCAAATCGTTTA 59.090 34.615 0.00 0.00 0.00 2.01
2535 3069 5.743398 CACACTGTTCACAATCAAATCGTTT 59.257 36.000 0.00 0.00 0.00 3.60
2536 3070 5.273170 CACACTGTTCACAATCAAATCGTT 58.727 37.500 0.00 0.00 0.00 3.85
2537 3071 4.789481 GCACACTGTTCACAATCAAATCGT 60.789 41.667 0.00 0.00 0.00 3.73
2538 3072 3.665409 GCACACTGTTCACAATCAAATCG 59.335 43.478 0.00 0.00 0.00 3.34
2539 3073 4.678287 CAGCACACTGTTCACAATCAAATC 59.322 41.667 0.00 0.00 39.22 2.17
2540 3074 4.613944 CAGCACACTGTTCACAATCAAAT 58.386 39.130 0.00 0.00 39.22 2.32
2541 3075 3.734597 GCAGCACACTGTTCACAATCAAA 60.735 43.478 0.00 0.00 46.30 2.69
2671 3211 0.539669 ACAAGCACACTAAAGGCCCC 60.540 55.000 0.00 0.00 0.00 5.80
2681 3221 2.842208 TGTTTAGCACACAAGCACAC 57.158 45.000 0.00 0.00 36.85 3.82
2704 3244 0.962356 AAGCTCAAATGCTCACGGGG 60.962 55.000 0.00 0.00 43.24 5.73
2709 3249 6.623549 GCACATTACTAAAGCTCAAATGCTCA 60.624 38.462 0.00 0.00 43.24 4.26
2725 3265 2.094675 GATGGCCTTGTGCACATTACT 58.905 47.619 22.39 3.56 43.89 2.24
2738 3278 2.291735 TGTTCATGAATGGTGATGGCCT 60.292 45.455 12.12 0.00 0.00 5.19
2740 3280 3.872511 TTGTTCATGAATGGTGATGGC 57.127 42.857 12.12 0.00 0.00 4.40
2741 3281 6.976349 CAGTATTTGTTCATGAATGGTGATGG 59.024 38.462 12.12 0.00 0.00 3.51
2742 3282 6.976349 CCAGTATTTGTTCATGAATGGTGATG 59.024 38.462 12.12 6.02 0.00 3.07
2826 3366 3.393687 AGATTACTCCCCATTGGCACTA 58.606 45.455 0.00 0.00 0.00 2.74
2827 3367 2.208872 AGATTACTCCCCATTGGCACT 58.791 47.619 0.00 0.00 0.00 4.40
2932 3488 4.012374 CACTAGAATGTGCAATCCCAAGT 58.988 43.478 0.00 0.00 0.00 3.16
2933 3489 4.012374 ACACTAGAATGTGCAATCCCAAG 58.988 43.478 0.00 0.00 41.30 3.61
2934 3490 4.032960 ACACTAGAATGTGCAATCCCAA 57.967 40.909 0.00 0.00 41.30 4.12
2935 3491 3.719268 ACACTAGAATGTGCAATCCCA 57.281 42.857 0.00 0.00 41.30 4.37
2936 3492 5.126067 ACATACACTAGAATGTGCAATCCC 58.874 41.667 0.00 0.00 41.30 3.85
2937 3493 6.683974 AACATACACTAGAATGTGCAATCC 57.316 37.500 0.00 0.00 41.30 3.01
2938 3494 7.530010 ACAAACATACACTAGAATGTGCAATC 58.470 34.615 0.00 0.00 41.30 2.67
2939 3495 7.452880 ACAAACATACACTAGAATGTGCAAT 57.547 32.000 0.00 0.00 41.30 3.56
2961 3517 6.205784 GCAACAAATTAGCAACTGAGTAACA 58.794 36.000 0.00 0.00 0.00 2.41
3332 3894 7.099764 CCGAGCCTCATATTTCACTATACAAT 58.900 38.462 0.00 0.00 0.00 2.71
3336 3898 4.772624 AGCCGAGCCTCATATTTCACTATA 59.227 41.667 0.00 0.00 0.00 1.31
3337 3899 3.580458 AGCCGAGCCTCATATTTCACTAT 59.420 43.478 0.00 0.00 0.00 2.12
3456 4032 1.003545 CAACACTCTCAACAGGTTGCG 60.004 52.381 7.28 1.58 40.24 4.85
3465 4041 1.532437 CATTGAGCGCAACACTCTCAA 59.468 47.619 11.47 9.48 46.72 3.02
3618 4194 2.289631 GGGGAAAATGCAAAGGAAGGTG 60.290 50.000 0.00 0.00 0.00 4.00
3646 4222 1.770294 AAGTTCAAAAACCTGCCCGA 58.230 45.000 0.00 0.00 35.92 5.14
4004 5510 3.944015 AGAATACTGTGCCATCTTGAAGC 59.056 43.478 0.00 0.00 0.00 3.86
4103 5609 6.100404 ACTTAATGTGACCAAAACATGCAT 57.900 33.333 0.00 0.00 38.27 3.96
4159 5667 8.859156 CCAAAAGGAACAAACATATTATTCACG 58.141 33.333 0.00 0.00 0.00 4.35
4194 5702 6.603201 CCCTCAATAACAGCCTCTGAAAATAA 59.397 38.462 0.29 0.00 35.18 1.40
4200 5708 2.501723 GACCCTCAATAACAGCCTCTGA 59.498 50.000 0.29 0.00 35.18 3.27
4208 5716 4.503910 CACGATCAAGACCCTCAATAACA 58.496 43.478 0.00 0.00 0.00 2.41
4241 5749 1.406887 GCAACCTCGCCCTTCTTCATA 60.407 52.381 0.00 0.00 0.00 2.15
4399 5907 4.216902 TGTTGAATCAGAAGAATGCACAGG 59.783 41.667 0.00 0.00 0.00 4.00
4429 5937 7.408756 AAGATGCTCATAATTTTGGCTGTAA 57.591 32.000 9.46 0.00 0.00 2.41
4457 5965 6.669591 TCCCATGACTCCTTATCCTATGTATG 59.330 42.308 0.00 0.00 0.00 2.39
4528 6036 0.039618 TGAACAAGGCATTCCCCTCC 59.960 55.000 0.00 0.00 32.93 4.30
4635 6144 3.247173 GCCGAGCAAAGATATGTGAGAAG 59.753 47.826 0.00 0.00 0.00 2.85
4643 6152 5.477510 CATAGAGAAGCCGAGCAAAGATAT 58.522 41.667 0.00 0.00 0.00 1.63
4854 6364 8.432013 ACACTATTGCAGGATCAGTGATAAATA 58.568 33.333 5.38 5.37 39.13 1.40
4914 6430 2.156343 ACCTGTCAAGAAAGCGAGAC 57.844 50.000 0.00 0.00 0.00 3.36
5107 6624 0.327924 ATCAGATTGTGGTTCCCGCA 59.672 50.000 0.00 0.00 42.73 5.69
5108 6625 1.940613 GTATCAGATTGTGGTTCCCGC 59.059 52.381 0.00 0.00 34.12 6.13
5109 6626 3.118775 TCAGTATCAGATTGTGGTTCCCG 60.119 47.826 0.00 0.00 0.00 5.14
5110 6627 4.192317 GTCAGTATCAGATTGTGGTTCCC 58.808 47.826 0.00 0.00 0.00 3.97
5111 6628 4.832248 TGTCAGTATCAGATTGTGGTTCC 58.168 43.478 0.00 0.00 0.00 3.62
5112 6629 5.352569 CCTTGTCAGTATCAGATTGTGGTTC 59.647 44.000 0.00 0.00 0.00 3.62
5113 6630 5.221925 ACCTTGTCAGTATCAGATTGTGGTT 60.222 40.000 0.00 0.00 0.00 3.67
5114 6631 4.287067 ACCTTGTCAGTATCAGATTGTGGT 59.713 41.667 0.00 0.00 0.00 4.16
5115 6632 4.836825 ACCTTGTCAGTATCAGATTGTGG 58.163 43.478 0.00 0.00 0.00 4.17
5116 6633 6.873605 TGTAACCTTGTCAGTATCAGATTGTG 59.126 38.462 0.00 0.00 0.00 3.33
5117 6634 6.874134 GTGTAACCTTGTCAGTATCAGATTGT 59.126 38.462 0.00 0.00 0.00 2.71
5118 6635 7.295952 GTGTAACCTTGTCAGTATCAGATTG 57.704 40.000 0.00 0.00 0.00 2.67
5149 6666 5.399301 CAGCGACTTCGTCAAAAATCAAATT 59.601 36.000 0.00 0.00 42.22 1.82
5181 6698 6.212589 TCTTGTATGTCAACTTCACATCCCTA 59.787 38.462 0.00 0.00 35.95 3.53
5329 6846 1.001487 TGCTGCGTGGACTCAAAATTG 60.001 47.619 0.00 0.00 0.00 2.32
5335 6852 1.067669 GATATCTGCTGCGTGGACTCA 59.932 52.381 0.00 0.00 0.00 3.41
5337 6854 1.407936 AGATATCTGCTGCGTGGACT 58.592 50.000 3.89 0.00 0.00 3.85
5646 7163 1.622607 TTGCATAGGGGCGCACTAGT 61.623 55.000 10.74 0.00 38.00 2.57
5650 7167 3.211963 CCTTGCATAGGGGCGCAC 61.212 66.667 10.83 4.83 40.67 5.34
5658 7175 0.737219 GAGCAGCCAACCTTGCATAG 59.263 55.000 0.00 0.00 0.00 2.23
5670 7188 0.095417 GTTCGAACGAATGAGCAGCC 59.905 55.000 13.36 0.00 36.45 4.85
5794 7315 5.104444 TCAATATAGGAAAACCCCTGCGTAA 60.104 40.000 0.00 0.00 37.10 3.18
5797 7318 3.815401 CTCAATATAGGAAAACCCCTGCG 59.185 47.826 0.00 0.00 37.10 5.18
5808 7329 6.794534 TCCTGACTGCTATCTCAATATAGGA 58.205 40.000 0.00 0.00 31.28 2.94
5828 7349 6.259608 CCTTGCAAATGACTATTCTACTCCTG 59.740 42.308 0.00 0.00 0.00 3.86
5838 7359 8.275040 AGTTATACCTTCCTTGCAAATGACTAT 58.725 33.333 0.00 0.00 0.00 2.12
5893 7414 7.661968 TGACTATGACTCTATAAGCATTCACC 58.338 38.462 0.00 0.00 0.00 4.02
5903 7424 5.410132 GCTCGCTCTTGACTATGACTCTATA 59.590 44.000 0.00 0.00 0.00 1.31
5908 7429 2.095461 TGCTCGCTCTTGACTATGACT 58.905 47.619 0.00 0.00 0.00 3.41
5909 7430 2.458951 CTGCTCGCTCTTGACTATGAC 58.541 52.381 0.00 0.00 0.00 3.06
5919 7938 3.768922 GGTCAGCCTGCTCGCTCT 61.769 66.667 0.00 0.00 36.82 4.09
5930 7949 4.098349 TCCTGCATCATTTATTTGGTCAGC 59.902 41.667 0.00 0.00 0.00 4.26
5931 7950 5.359009 ACTCCTGCATCATTTATTTGGTCAG 59.641 40.000 0.00 0.00 0.00 3.51
5959 7992 3.117738 CCTTATTGCTTCTCACCATCCCT 60.118 47.826 0.00 0.00 0.00 4.20
5994 8027 2.624838 CTCAATTTGGTGTGCTGGAGTT 59.375 45.455 0.00 0.00 0.00 3.01
5998 8031 0.963962 AGCTCAATTTGGTGTGCTGG 59.036 50.000 1.30 0.00 44.42 4.85
6018 8051 5.621193 ACCAGTACATTTCTTTAGTGTGCT 58.379 37.500 0.00 0.00 38.97 4.40
6039 8072 5.469479 CAACCATTCCAGTGAAATTGTACC 58.531 41.667 0.00 0.00 33.32 3.34
6061 8094 6.295249 TCAATTGTTGTCTGTAGAATGTCCA 58.705 36.000 5.13 0.00 0.00 4.02
6079 8112 9.939802 TGTCTATCATCCATCTAATCTCAATTG 57.060 33.333 0.00 0.00 0.00 2.32
6149 8182 8.138074 GCAGTAGTGATGACTGATGACTAATTA 58.862 37.037 0.42 0.00 46.01 1.40
6150 8183 6.983307 GCAGTAGTGATGACTGATGACTAATT 59.017 38.462 0.42 0.00 46.01 1.40
6151 8184 6.323482 AGCAGTAGTGATGACTGATGACTAAT 59.677 38.462 0.42 0.00 46.01 1.73
6152 8185 5.654209 AGCAGTAGTGATGACTGATGACTAA 59.346 40.000 0.42 0.00 46.01 2.24
6153 8186 5.196695 AGCAGTAGTGATGACTGATGACTA 58.803 41.667 0.42 0.00 46.01 2.59
6154 8187 4.022603 AGCAGTAGTGATGACTGATGACT 58.977 43.478 0.42 0.00 46.01 3.41
6155 8188 4.383850 AGCAGTAGTGATGACTGATGAC 57.616 45.455 0.42 0.00 46.01 3.06
6163 8196 4.248058 CATTGTGTCAGCAGTAGTGATGA 58.752 43.478 14.40 14.40 46.84 2.92
6164 8197 3.373130 CCATTGTGTCAGCAGTAGTGATG 59.627 47.826 9.59 9.59 41.74 3.07
6165 8198 3.008375 ACCATTGTGTCAGCAGTAGTGAT 59.992 43.478 0.42 0.00 0.00 3.06
6166 8199 2.368548 ACCATTGTGTCAGCAGTAGTGA 59.631 45.455 0.42 0.00 0.00 3.41
6167 8200 2.771089 ACCATTGTGTCAGCAGTAGTG 58.229 47.619 0.00 0.00 0.00 2.74
6168 8201 3.071602 AGAACCATTGTGTCAGCAGTAGT 59.928 43.478 0.00 0.00 0.00 2.73
6169 8202 3.668447 AGAACCATTGTGTCAGCAGTAG 58.332 45.455 0.00 0.00 0.00 2.57
6170 8203 3.769739 AGAACCATTGTGTCAGCAGTA 57.230 42.857 0.00 0.00 0.00 2.74
6171 8204 2.645838 AGAACCATTGTGTCAGCAGT 57.354 45.000 0.00 0.00 0.00 4.40
6172 8205 3.996150 AAAGAACCATTGTGTCAGCAG 57.004 42.857 0.00 0.00 0.00 4.24
6173 8206 4.460263 ACTAAAGAACCATTGTGTCAGCA 58.540 39.130 0.00 0.00 0.00 4.41
6174 8207 5.438761 AACTAAAGAACCATTGTGTCAGC 57.561 39.130 0.00 0.00 0.00 4.26
6175 8208 9.965824 AATTAAACTAAAGAACCATTGTGTCAG 57.034 29.630 0.00 0.00 0.00 3.51
6200 8233 8.668353 GCATTGTTTTATCTGACTGATGACTAA 58.332 33.333 5.16 0.00 36.65 2.24
6201 8234 8.043113 AGCATTGTTTTATCTGACTGATGACTA 58.957 33.333 5.16 0.39 36.65 2.59
6202 8235 6.883217 AGCATTGTTTTATCTGACTGATGACT 59.117 34.615 5.16 0.00 36.65 3.41
6203 8236 7.081526 AGCATTGTTTTATCTGACTGATGAC 57.918 36.000 5.16 2.80 36.65 3.06
6204 8237 8.043113 AGTAGCATTGTTTTATCTGACTGATGA 58.957 33.333 5.16 0.00 36.65 2.92
6205 8238 8.206325 AGTAGCATTGTTTTATCTGACTGATG 57.794 34.615 5.16 0.00 36.65 3.07
6206 8239 7.497249 GGAGTAGCATTGTTTTATCTGACTGAT 59.503 37.037 0.19 0.19 39.11 2.90
6207 8240 6.818644 GGAGTAGCATTGTTTTATCTGACTGA 59.181 38.462 0.00 0.00 0.00 3.41
6208 8241 6.037610 GGGAGTAGCATTGTTTTATCTGACTG 59.962 42.308 0.00 0.00 0.00 3.51
6209 8242 6.116126 GGGAGTAGCATTGTTTTATCTGACT 58.884 40.000 0.00 0.00 0.00 3.41
6210 8243 5.297029 GGGGAGTAGCATTGTTTTATCTGAC 59.703 44.000 0.00 0.00 0.00 3.51
6211 8244 5.437060 GGGGAGTAGCATTGTTTTATCTGA 58.563 41.667 0.00 0.00 0.00 3.27
6212 8245 4.580580 GGGGGAGTAGCATTGTTTTATCTG 59.419 45.833 0.00 0.00 0.00 2.90
6213 8246 4.686122 CGGGGGAGTAGCATTGTTTTATCT 60.686 45.833 0.00 0.00 0.00 1.98
6214 8247 3.564225 CGGGGGAGTAGCATTGTTTTATC 59.436 47.826 0.00 0.00 0.00 1.75
6215 8248 3.053917 ACGGGGGAGTAGCATTGTTTTAT 60.054 43.478 0.00 0.00 0.00 1.40
6216 8249 2.306512 ACGGGGGAGTAGCATTGTTTTA 59.693 45.455 0.00 0.00 0.00 1.52
6217 8250 1.074889 ACGGGGGAGTAGCATTGTTTT 59.925 47.619 0.00 0.00 0.00 2.43
6218 8251 0.696501 ACGGGGGAGTAGCATTGTTT 59.303 50.000 0.00 0.00 0.00 2.83
6219 8252 0.035439 CACGGGGGAGTAGCATTGTT 60.035 55.000 0.00 0.00 0.00 2.83
6220 8253 1.602237 CACGGGGGAGTAGCATTGT 59.398 57.895 0.00 0.00 0.00 2.71
6221 8254 1.819632 GCACGGGGGAGTAGCATTG 60.820 63.158 0.00 0.00 0.00 2.82
6222 8255 0.689745 TAGCACGGGGGAGTAGCATT 60.690 55.000 0.00 0.00 0.00 3.56
6223 8256 1.075525 TAGCACGGGGGAGTAGCAT 60.076 57.895 0.00 0.00 0.00 3.79
6224 8257 2.056223 GTAGCACGGGGGAGTAGCA 61.056 63.158 0.00 0.00 0.00 3.49
6225 8258 1.736365 GAGTAGCACGGGGGAGTAGC 61.736 65.000 0.00 0.00 0.00 3.58
6226 8259 1.108132 GGAGTAGCACGGGGGAGTAG 61.108 65.000 0.00 0.00 0.00 2.57
6227 8260 1.076485 GGAGTAGCACGGGGGAGTA 60.076 63.158 0.00 0.00 0.00 2.59
6228 8261 2.363925 GGAGTAGCACGGGGGAGT 60.364 66.667 0.00 0.00 0.00 3.85
6229 8262 3.155167 GGGAGTAGCACGGGGGAG 61.155 72.222 0.00 0.00 0.00 4.30
6230 8263 4.791069 GGGGAGTAGCACGGGGGA 62.791 72.222 0.00 0.00 0.00 4.81
6232 8265 1.921869 ATTTGGGGAGTAGCACGGGG 61.922 60.000 0.00 0.00 0.00 5.73
6233 8266 0.834612 TATTTGGGGAGTAGCACGGG 59.165 55.000 0.00 0.00 0.00 5.28
6234 8267 1.760613 TCTATTTGGGGAGTAGCACGG 59.239 52.381 0.00 0.00 0.00 4.94
6235 8268 3.069586 TCATCTATTTGGGGAGTAGCACG 59.930 47.826 0.00 0.00 0.00 5.34
6236 8269 4.101741 AGTCATCTATTTGGGGAGTAGCAC 59.898 45.833 0.00 0.00 0.00 4.40
6237 8270 4.298626 AGTCATCTATTTGGGGAGTAGCA 58.701 43.478 0.00 0.00 0.00 3.49
6238 8271 4.345257 TGAGTCATCTATTTGGGGAGTAGC 59.655 45.833 0.00 0.00 0.00 3.58
6239 8272 6.485830 TTGAGTCATCTATTTGGGGAGTAG 57.514 41.667 0.00 0.00 0.00 2.57
6240 8273 7.451731 AATTGAGTCATCTATTTGGGGAGTA 57.548 36.000 0.00 0.00 28.12 2.59
6241 8274 5.983333 ATTGAGTCATCTATTTGGGGAGT 57.017 39.130 0.00 0.00 0.00 3.85
6242 8275 7.123247 ACAAAATTGAGTCATCTATTTGGGGAG 59.877 37.037 17.40 5.44 39.11 4.30
6243 8276 6.953520 ACAAAATTGAGTCATCTATTTGGGGA 59.046 34.615 17.40 0.00 39.11 4.81
6244 8277 7.174107 ACAAAATTGAGTCATCTATTTGGGG 57.826 36.000 17.40 8.40 39.11 4.96
6245 8278 8.190784 GGTACAAAATTGAGTCATCTATTTGGG 58.809 37.037 17.40 10.03 39.11 4.12
6246 8279 8.739039 TGGTACAAAATTGAGTCATCTATTTGG 58.261 33.333 17.40 11.14 39.11 3.28
6266 8299 7.885297 ACTTTATACTGACTAACGTTGGTACA 58.115 34.615 17.85 15.04 0.00 2.90
6267 8300 8.642020 CAACTTTATACTGACTAACGTTGGTAC 58.358 37.037 17.85 11.47 35.94 3.34
6268 8301 7.814107 CCAACTTTATACTGACTAACGTTGGTA 59.186 37.037 17.85 2.14 44.88 3.25
6269 8302 6.647895 CCAACTTTATACTGACTAACGTTGGT 59.352 38.462 17.87 17.87 44.88 3.67
6270 8303 7.057149 CCAACTTTATACTGACTAACGTTGG 57.943 40.000 11.99 11.17 44.74 3.77
6271 8304 6.647895 ACCCAACTTTATACTGACTAACGTTG 59.352 38.462 11.99 3.57 37.73 4.10
6272 8305 6.762333 ACCCAACTTTATACTGACTAACGTT 58.238 36.000 5.88 5.88 0.00 3.99
6273 8306 6.015180 TGACCCAACTTTATACTGACTAACGT 60.015 38.462 0.00 0.00 0.00 3.99
6274 8307 6.392354 TGACCCAACTTTATACTGACTAACG 58.608 40.000 0.00 0.00 0.00 3.18
6275 8308 8.258708 AGATGACCCAACTTTATACTGACTAAC 58.741 37.037 0.00 0.00 0.00 2.34
6276 8309 8.375493 AGATGACCCAACTTTATACTGACTAA 57.625 34.615 0.00 0.00 0.00 2.24
6277 8310 7.973048 AGATGACCCAACTTTATACTGACTA 57.027 36.000 0.00 0.00 0.00 2.59
6278 8311 6.875972 AGATGACCCAACTTTATACTGACT 57.124 37.500 0.00 0.00 0.00 3.41
6279 8312 9.614792 AAATAGATGACCCAACTTTATACTGAC 57.385 33.333 0.00 0.00 0.00 3.51
6286 8319 9.158233 CGTTCTAAAATAGATGACCCAACTTTA 57.842 33.333 0.00 0.00 34.22 1.85
6287 8320 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
6288 8321 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
6289 8322 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
6290 8323 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
6291 8324 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
6292 8325 5.943349 TCCGTTCTAAAATAGATGACCCA 57.057 39.130 0.00 0.00 34.22 4.51
6293 8326 5.758784 CCTTCCGTTCTAAAATAGATGACCC 59.241 44.000 0.00 0.00 34.22 4.46
6294 8327 6.579865 TCCTTCCGTTCTAAAATAGATGACC 58.420 40.000 0.00 0.00 34.22 4.02
6295 8328 7.266400 ACTCCTTCCGTTCTAAAATAGATGAC 58.734 38.462 0.00 0.00 34.22 3.06
6296 8329 7.419711 ACTCCTTCCGTTCTAAAATAGATGA 57.580 36.000 0.00 0.00 34.22 2.92
6297 8330 8.414778 AGTACTCCTTCCGTTCTAAAATAGATG 58.585 37.037 0.00 0.00 34.22 2.90
6298 8331 8.536340 AGTACTCCTTCCGTTCTAAAATAGAT 57.464 34.615 0.00 0.00 34.22 1.98
6299 8332 7.951347 AGTACTCCTTCCGTTCTAAAATAGA 57.049 36.000 0.00 0.00 0.00 1.98
6300 8333 8.631676 GAAGTACTCCTTCCGTTCTAAAATAG 57.368 38.462 0.00 0.00 43.25 1.73
6314 8347 4.647399 GGCATCTCTACAGAAGTACTCCTT 59.353 45.833 0.00 0.00 35.59 3.36
6315 8348 4.079443 AGGCATCTCTACAGAAGTACTCCT 60.079 45.833 0.00 0.00 30.24 3.69
6316 8349 4.037446 CAGGCATCTCTACAGAAGTACTCC 59.963 50.000 0.00 0.00 30.24 3.85
6317 8350 4.884744 TCAGGCATCTCTACAGAAGTACTC 59.115 45.833 0.00 0.00 30.24 2.59
6318 8351 4.861196 TCAGGCATCTCTACAGAAGTACT 58.139 43.478 0.00 0.00 30.24 2.73
6319 8352 5.782893 ATCAGGCATCTCTACAGAAGTAC 57.217 43.478 0.00 0.00 30.24 2.73
6320 8353 6.007076 CCTATCAGGCATCTCTACAGAAGTA 58.993 44.000 0.00 0.00 30.24 2.24
6321 8354 4.832266 CCTATCAGGCATCTCTACAGAAGT 59.168 45.833 0.00 0.00 30.24 3.01
6322 8355 5.389859 CCTATCAGGCATCTCTACAGAAG 57.610 47.826 0.00 0.00 30.24 2.85
6336 8369 3.758755 TCTGCATGTAAGCCTATCAGG 57.241 47.619 0.00 0.00 38.80 3.86
6337 8370 3.436015 GCATCTGCATGTAAGCCTATCAG 59.564 47.826 0.00 0.00 41.59 2.90
6338 8371 3.072038 AGCATCTGCATGTAAGCCTATCA 59.928 43.478 4.79 0.00 45.16 2.15
6339 8372 3.672808 AGCATCTGCATGTAAGCCTATC 58.327 45.455 4.79 0.00 45.16 2.08
6340 8373 3.558746 GGAGCATCTGCATGTAAGCCTAT 60.559 47.826 4.79 0.00 45.16 2.57
6341 8374 2.224378 GGAGCATCTGCATGTAAGCCTA 60.224 50.000 4.79 0.00 45.16 3.93
6342 8375 1.476471 GGAGCATCTGCATGTAAGCCT 60.476 52.381 4.79 0.00 45.16 4.58
6343 8376 0.950116 GGAGCATCTGCATGTAAGCC 59.050 55.000 4.79 0.00 45.16 4.35
6344 8377 1.964552 AGGAGCATCTGCATGTAAGC 58.035 50.000 4.79 0.00 45.16 3.09
6345 8378 3.806380 AGAAGGAGCATCTGCATGTAAG 58.194 45.455 4.79 0.00 45.16 2.34
6346 8379 3.453717 AGAGAAGGAGCATCTGCATGTAA 59.546 43.478 4.79 0.00 45.16 2.41
6347 8380 3.036819 AGAGAAGGAGCATCTGCATGTA 58.963 45.455 4.79 0.00 45.16 2.29
6348 8381 1.838715 AGAGAAGGAGCATCTGCATGT 59.161 47.619 4.79 0.00 45.16 3.21
6349 8382 2.158943 TCAGAGAAGGAGCATCTGCATG 60.159 50.000 4.79 0.00 45.16 4.06
6350 8383 2.117051 TCAGAGAAGGAGCATCTGCAT 58.883 47.619 4.79 0.00 45.16 3.96
6351 8384 1.565067 TCAGAGAAGGAGCATCTGCA 58.435 50.000 4.79 0.00 45.16 4.41
6352 8385 2.914695 ATCAGAGAAGGAGCATCTGC 57.085 50.000 0.00 0.00 40.22 4.26
6353 8386 6.289834 ACATTTATCAGAGAAGGAGCATCTG 58.710 40.000 0.00 0.00 41.47 2.90
6354 8387 6.497624 ACATTTATCAGAGAAGGAGCATCT 57.502 37.500 0.00 0.00 33.73 2.90
6355 8388 7.212976 TGTACATTTATCAGAGAAGGAGCATC 58.787 38.462 0.00 0.00 0.00 3.91
6356 8389 7.129457 TGTACATTTATCAGAGAAGGAGCAT 57.871 36.000 0.00 0.00 0.00 3.79
6357 8390 6.544928 TGTACATTTATCAGAGAAGGAGCA 57.455 37.500 0.00 0.00 0.00 4.26
6358 8391 7.212976 TGATGTACATTTATCAGAGAAGGAGC 58.787 38.462 10.30 0.00 0.00 4.70
6359 8392 9.039870 GTTGATGTACATTTATCAGAGAAGGAG 57.960 37.037 10.30 0.00 35.01 3.69
6360 8393 8.762645 AGTTGATGTACATTTATCAGAGAAGGA 58.237 33.333 10.30 0.00 35.01 3.36
6361 8394 8.954950 AGTTGATGTACATTTATCAGAGAAGG 57.045 34.615 10.30 0.00 35.01 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.