AutoCloner

Multiple sequence alignment - TraesCS7D01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G257100	chr7D	100.000	3719	0	0	1	3719	232499633	232495915	0.000000e+00	6868.0
1	TraesCS7D01G257100	chr7D	82.890	526	45	18	2955	3476	465903649	465904133	7.380000e-117	431.0
2	TraesCS7D01G257100	chr7D	95.628	183	8	0	2323	2505	230994998	230995180	1.010000e-75	294.0
3	TraesCS7D01G257100	chr7D	77.483	453	87	9	750	1193	230992777	230993223	1.330000e-64	257.0
4	TraesCS7D01G257100	chr7A	93.060	2291	113	11	681	2936	244672581	244670302	0.000000e+00	3308.0
5	TraesCS7D01G257100	chr7A	98.569	629	9	0	4	632	244673210	244672582	0.000000e+00	1112.0
6	TraesCS7D01G257100	chr7A	91.786	767	32	5	2954	3719	719572171	719572907	0.000000e+00	1038.0
7	TraesCS7D01G257100	chr7A	78.775	457	70	17	750	1193	243852231	243852673	7.860000e-72	281.0
8	TraesCS7D01G257100	chr7A	93.989	183	11	0	2323	2505	243853665	243853847	1.020000e-70	278.0
9	TraesCS7D01G257100	chr7A	86.316	95	11	1	2935	3027	369838516	369838422	6.570000e-18	102.0
10	TraesCS7D01G257100	chr7B	93.457	2048	89	19	4	2015	203283535	203281497	0.000000e+00	2998.0
11	TraesCS7D01G257100	chr7B	93.384	393	21	3	2547	2937	203280142	203279753	8.960000e-161	577.0
12	TraesCS7D01G257100	chr7B	95.692	325	14	0	2199	2523	203280675	203280351	1.180000e-144	523.0
13	TraesCS7D01G257100	chr7B	94.536	183	10	0	2323	2505	202507519	202507701	2.190000e-72	283.0
14	TraesCS7D01G257100	chr7B	77.232	448	70	19	764	1193	202505665	202506098	2.230000e-57	233.0
15	TraesCS7D01G257100	chr1D	95.170	766	10	1	2954	3719	379836490	379835752	0.000000e+00	1184.0
16	TraesCS7D01G257100	chr2D	93.995	766	18	6	2954	3719	525642647	525643384	0.000000e+00	1134.0
17	TraesCS7D01G257100	chr5A	91.265	767	36	5	2954	3719	225194260	225194996	0.000000e+00	1016.0
18	TraesCS7D01G257100	chr5A	92.670	191	14	0	2314	2504	488255902	488256092	3.660000e-70	276.0
19	TraesCS7D01G257100	chr5A	90.547	201	18	1	2314	2514	488316334	488316135	7.920000e-67	265.0
20	TraesCS7D01G257100	chr5A	87.413	143	17	1	2576	2718	488256201	488256342	2.970000e-36	163.0
21	TraesCS7D01G257100	chr5A	87.692	130	16	0	2588	2717	488316027	488315898	6.430000e-33	152.0
22	TraesCS7D01G257100	chr6B	81.921	531	48	25	2955	3479	94081900	94081412	4.470000e-109	405.0
23	TraesCS7D01G257100	chr5B	80.608	526	65	23	2955	3476	556363321	556363813	4.540000e-99	372.0
24	TraesCS7D01G257100	chrUn	86.826	334	14	8	2954	3284	396525145	396525451	2.750000e-91	346.0
25	TraesCS7D01G257100	chrUn	93.923	181	11	0	3539	3719	299569968	299570148	1.320000e-69	274.0
26	TraesCS7D01G257100	chrUn	93.923	181	11	0	3539	3719	361290560	361290740	1.320000e-69	274.0
27	TraesCS7D01G257100	chr5D	93.194	191	13	0	2314	2504	386687515	386687325	7.860000e-72	281.0
28	TraesCS7D01G257100	chr5D	92.147	191	15	0	2314	2504	386647059	386647249	1.700000e-68	270.0
29	TraesCS7D01G257100	chr5D	88.889	144	13	3	2576	2718	386647357	386647498	1.370000e-39	174.0
30	TraesCS7D01G257100	chr5D	86.765	136	18	0	2582	2717	386687218	386687083	6.430000e-33	152.0
31	TraesCS7D01G257100	chr4A	85.263	95	12	1	2935	3027	182478967	182479061	3.060000e-16	97.1
32	TraesCS7D01G257100	chr3A	85.263	95	12	1	2935	3027	307100251	307100157	3.060000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G257100	chr7D	232495915	232499633	3718	True	6868.0	6868	100.000000	1	3719	1	chr7D.!!$R1	3718
1	TraesCS7D01G257100	chr7D	230992777	230995180	2403	False	275.5	294	86.555500	750	2505	2	chr7D.!!$F2	1755
2	TraesCS7D01G257100	chr7A	244670302	244673210	2908	True	2210.0	3308	95.814500	4	2936	2	chr7A.!!$R2	2932
3	TraesCS7D01G257100	chr7A	719572171	719572907	736	False	1038.0	1038	91.786000	2954	3719	1	chr7A.!!$F1	765
4	TraesCS7D01G257100	chr7A	243852231	243853847	1616	False	279.5	281	86.382000	750	2505	2	chr7A.!!$F2	1755
5	TraesCS7D01G257100	chr7B	203279753	203283535	3782	True	1366.0	2998	94.177667	4	2937	3	chr7B.!!$R1	2933
6	TraesCS7D01G257100	chr7B	202505665	202507701	2036	False	258.0	283	85.884000	764	2505	2	chr7B.!!$F1	1741
7	TraesCS7D01G257100	chr1D	379835752	379836490	738	True	1184.0	1184	95.170000	2954	3719	1	chr1D.!!$R1	765
8	TraesCS7D01G257100	chr2D	525642647	525643384	737	False	1134.0	1134	93.995000	2954	3719	1	chr2D.!!$F1	765
9	TraesCS7D01G257100	chr5A	225194260	225194996	736	False	1016.0	1016	91.265000	2954	3719	1	chr5A.!!$F1	765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
627	628	0.806492	GGACGACATTTCTCGCCTCC	60.806	60.0	0.0	0.0	37.15	4.30	F
1273	1311	0.106918	TGGAGGTCTGTGGCGTTTTT	60.107	50.0	0.0	0.0	0.00	1.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2172	3736	0.037326	CTGCGCCTTGTGGACTCTAA	60.037	55.0	4.18	0.0	34.57	2.10	R
3172	4951	0.103026	CGCCAGATCGATTCCAGTGA	59.897	55.0	0.00	0.0	0.00	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
627	628	0.806492	GGACGACATTTCTCGCCTCC	60.806	60.000	0.00	0.00	37.15	4.30
677	679	2.125106	GCTAACGGTGGAGCTGGG	60.125	66.667	0.00	0.00	35.73	4.45
831	835	1.135315	CGTCGCCTTGCAATTCCAG	59.865	57.895	0.00	0.00	0.00	3.86
861	871	1.735369	CGCTCTTCTTGCACCTCTCTC	60.735	57.143	0.00	0.00	0.00	3.20
862	872	1.550072	GCTCTTCTTGCACCTCTCTCT	59.450	52.381	0.00	0.00	0.00	3.10
1095	1109	2.332063	ACATTGGCCTCAAGGTATCG	57.668	50.000	3.32	0.00	44.70	2.92
1273	1311	0.106918	TGGAGGTCTGTGGCGTTTTT	60.107	50.000	0.00	0.00	0.00	1.94
1354	1398	5.570320	AGGCTATGTTACTGTGAAATGGTT	58.430	37.500	0.00	0.00	0.00	3.67
1355	1399	6.010219	AGGCTATGTTACTGTGAAATGGTTT	58.990	36.000	0.00	0.00	0.00	3.27
1362	1406	4.122143	ACTGTGAAATGGTTTGTGTTGG	57.878	40.909	0.00	0.00	0.00	3.77
1439	1501	5.016173	TGAAGGTGGAAACCATTTAGGATG	58.984	41.667	0.00	0.00	41.22	3.51
1514	1576	6.815641	TGTTTGTTGTGCTTGTACATCAAATT	59.184	30.769	21.47	0.00	44.92	1.82
1602	1665	9.959749	TTTACCTTGTTGTTTTATTGATGACTC	57.040	29.630	0.00	0.00	0.00	3.36
1603	1666	6.981722	ACCTTGTTGTTTTATTGATGACTCC	58.018	36.000	0.00	0.00	0.00	3.85
1670	1748	8.734386	AGAAAACATCTTCTTGAGCGAATATTT	58.266	29.630	0.00	0.00	33.39	1.40
1841	1922	3.287222	CTTCTCCCAACACTTGTTTCCA	58.713	45.455	0.00	0.00	35.83	3.53
1928	2010	8.861101	GCTTAACTACTTCTACACTGTTATGTG	58.139	37.037	0.00	0.00	43.07	3.21
2015	2148	2.440253	TGGTGCAAGTATACCCCCATAC	59.560	50.000	0.00	0.00	36.10	2.39
2050	3115	3.004024	AGTGATTTGTTGCTTTGCTCG	57.996	42.857	0.00	0.00	0.00	5.03
2187	3751	3.440522	GTCCATTTTAGAGTCCACAAGGC	59.559	47.826	0.00	0.00	33.74	4.35
2197	3761	2.401766	CCACAAGGCGCAGGTGATC	61.402	63.158	21.90	0.00	34.52	2.92
2216	3781	6.436218	GGTGATCCTAGGTTGTTTGGTATTTT	59.564	38.462	9.08	0.00	0.00	1.82
2217	3782	7.312899	GTGATCCTAGGTTGTTTGGTATTTTG	58.687	38.462	9.08	0.00	0.00	2.44
2254	3819	4.899502	TGTCTTTTCATCTCTTCTGGACC	58.100	43.478	0.00	0.00	0.00	4.46
2529	4121	4.142469	GGGTGTTTATCATGCCTTGTACAC	60.142	45.833	0.00	0.00	0.00	2.90
2531	4123	5.391950	GGTGTTTATCATGCCTTGTACACTG	60.392	44.000	0.00	0.00	0.00	3.66
2541	4133	2.061773	CTTGTACACTGCTGTCTTCCG	58.938	52.381	0.00	0.00	0.00	4.30
2560	4337	5.222079	TCCGCTATTATGGTCATGCTAAA	57.778	39.130	0.00	0.00	0.00	1.85
2607	4384	0.824759	GGACCTACTGTGCGGAGATT	59.175	55.000	5.17	0.00	0.00	2.40
2625	4402	2.110213	GCCCACAACGTCTCCACA	59.890	61.111	0.00	0.00	0.00	4.17
2655	4432	1.210155	GGACATTGTTGAGCGTGCC	59.790	57.895	0.00	0.00	0.00	5.01
2833	4610	2.065899	ACCTTTTTGCTACCAGTGCA	57.934	45.000	0.00	0.00	38.80	4.57
2897	4674	1.868713	TCCCATTGCCAATTGCTGAT	58.131	45.000	0.00	0.00	42.00	2.90
2927	4706	1.184970	AATTGGGGTTTGGGTCTGCG	61.185	55.000	0.00	0.00	0.00	5.18
2937	4716	4.272748	GGTTTGGGTCTGCGTTATATTCTC	59.727	45.833	0.00	0.00	0.00	2.87
2938	4717	5.116882	GTTTGGGTCTGCGTTATATTCTCT	58.883	41.667	0.00	0.00	0.00	3.10
2939	4718	6.278363	GTTTGGGTCTGCGTTATATTCTCTA	58.722	40.000	0.00	0.00	0.00	2.43
2940	4719	5.449107	TGGGTCTGCGTTATATTCTCTAC	57.551	43.478	0.00	0.00	0.00	2.59
2941	4720	5.138276	TGGGTCTGCGTTATATTCTCTACT	58.862	41.667	0.00	0.00	0.00	2.57
2942	4721	5.241064	TGGGTCTGCGTTATATTCTCTACTC	59.759	44.000	0.00	0.00	0.00	2.59
2943	4722	5.335819	GGGTCTGCGTTATATTCTCTACTCC	60.336	48.000	0.00	0.00	0.00	3.85
2944	4723	5.474189	GGTCTGCGTTATATTCTCTACTCCT	59.526	44.000	0.00	0.00	0.00	3.69
2945	4724	6.654161	GGTCTGCGTTATATTCTCTACTCCTA	59.346	42.308	0.00	0.00	0.00	2.94
2946	4725	7.337436	GGTCTGCGTTATATTCTCTACTCCTAT	59.663	40.741	0.00	0.00	0.00	2.57
2947	4726	9.381033	GTCTGCGTTATATTCTCTACTCCTATA	57.619	37.037	0.00	0.00	0.00	1.31
2948	4727	9.955102	TCTGCGTTATATTCTCTACTCCTATAA	57.045	33.333	0.00	0.00	0.00	0.98
3151	4930	1.446099	CACCGACGGACATCACTGG	60.446	63.158	23.38	0.00	0.00	4.00
3152	4931	1.605451	ACCGACGGACATCACTGGA	60.605	57.895	23.38	0.00	0.00	3.86
3153	4932	1.183030	ACCGACGGACATCACTGGAA	61.183	55.000	23.38	0.00	0.00	3.53
3154	4933	0.175760	CCGACGGACATCACTGGAAT	59.824	55.000	8.64	0.00	0.00	3.01
3155	4934	1.560923	CGACGGACATCACTGGAATC	58.439	55.000	0.00	0.00	0.00	2.52
3156	4935	1.560923	GACGGACATCACTGGAATCG	58.439	55.000	0.00	0.00	0.00	3.34
3157	4936	1.134367	GACGGACATCACTGGAATCGA	59.866	52.381	0.00	0.00	0.00	3.59
3158	4937	1.757118	ACGGACATCACTGGAATCGAT	59.243	47.619	0.00	0.00	0.00	3.59
3159	4938	2.223829	ACGGACATCACTGGAATCGATC	60.224	50.000	0.00	0.00	0.00	3.69
3160	4939	2.035193	CGGACATCACTGGAATCGATCT	59.965	50.000	0.00	0.00	0.00	2.75
3161	4940	3.388308	GGACATCACTGGAATCGATCTG	58.612	50.000	0.00	0.00	0.00	2.90
3162	4941	3.388308	GACATCACTGGAATCGATCTGG	58.612	50.000	0.00	0.00	0.00	3.86
3163	4942	2.141517	CATCACTGGAATCGATCTGGC	58.858	52.381	0.00	0.00	0.00	4.85
3164	4943	0.103026	TCACTGGAATCGATCTGGCG	59.897	55.000	0.00	0.00	0.00	5.69
3165	4944	1.227380	ACTGGAATCGATCTGGCGC	60.227	57.895	0.00	0.00	0.00	6.53
3166	4945	1.958205	CTGGAATCGATCTGGCGCC	60.958	63.158	22.73	22.73	0.00	6.53
3167	4946	3.038417	GGAATCGATCTGGCGCCG	61.038	66.667	23.90	16.91	0.00	6.46
3168	4947	3.038417	GAATCGATCTGGCGCCGG	61.038	66.667	30.18	30.18	0.00	6.13
3169	4948	3.499929	GAATCGATCTGGCGCCGGA	62.500	63.158	38.68	38.68	35.60	5.14
3170	4949	3.792053	AATCGATCTGGCGCCGGAC	62.792	63.158	39.38	28.69	33.73	4.79
3172	4951	4.592192	CGATCTGGCGCCGGACAT	62.592	66.667	39.38	25.66	33.73	3.06
3173	4952	2.663188	GATCTGGCGCCGGACATC	60.663	66.667	39.38	29.01	33.73	3.06
3174	4953	3.445518	GATCTGGCGCCGGACATCA	62.446	63.158	39.38	18.56	33.73	3.07
3175	4954	3.740128	ATCTGGCGCCGGACATCAC	62.740	63.158	39.38	3.46	33.73	3.06
3176	4955	4.457496	CTGGCGCCGGACATCACT	62.457	66.667	32.31	0.00	0.00	3.41
3177	4956	4.758251	TGGCGCCGGACATCACTG	62.758	66.667	23.90	0.00	0.00	3.66
3253	5032	0.831966	CCTCTCATGCTTCTCAGCCT	59.168	55.000	0.00	0.00	46.74	4.58
3317	5096	3.003173	CCCTTGCCCGTCTCCTCA	61.003	66.667	0.00	0.00	0.00	3.86
3319	5098	1.376037	CCTTGCCCGTCTCCTCAAC	60.376	63.158	0.00	0.00	0.00	3.18
3326	5105	2.182030	GTCTCCTCAACCGCCGAG	59.818	66.667	0.00	0.00	0.00	4.63
3549	5329	2.658285	CCTTTATTGATCCAGCAGCCA	58.342	47.619	0.00	0.00	0.00	4.75
3605	5385	1.235281	CGTCTCCTCCGACACTGACA	61.235	60.000	0.00	0.00	33.54	3.58
3608	5388	1.004862	TCTCCTCCGACACTGACATCT	59.995	52.381	0.00	0.00	0.00	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.517450	GCGCCTACAAGCTGCTACG	61.517	63.158	0.90	0.00	32.19	3.51
1	2	2.174319	GGCGCCTACAAGCTGCTAC	61.174	63.158	22.15	0.00	34.30	3.58
2	3	2.186903	GGCGCCTACAAGCTGCTA	59.813	61.111	22.15	0.00	34.30	3.49
655	657	2.494918	CTCCACCGTTAGCTCCCG	59.505	66.667	0.00	0.00	0.00	5.14
677	679	0.107165	ATGGGCCTCCGTTTCTAAGC	60.107	55.000	4.53	0.00	35.24	3.09
851	861	1.205893	CCCTAACACAGAGAGAGGTGC	59.794	57.143	0.00	0.00	38.57	5.01
853	863	3.261818	AACCCTAACACAGAGAGAGGT	57.738	47.619	0.00	0.00	0.00	3.85
861	871	1.897802	ACGACCCTAACCCTAACACAG	59.102	52.381	0.00	0.00	0.00	3.66
862	872	2.014010	ACGACCCTAACCCTAACACA	57.986	50.000	0.00	0.00	0.00	3.72
921	935	3.053896	CCCGGGAAAACGAGGTGC	61.054	66.667	18.48	0.00	35.47	5.01
1020	1034	3.430098	CCCTCTTCTTCACGATCTTCCTG	60.430	52.174	0.00	0.00	0.00	3.86
1095	1109	1.004440	AAGTCTGGCAGAAGCGGTC	60.004	57.895	20.62	5.54	43.41	4.79
1099	1113	1.939255	GCATAGAAGTCTGGCAGAAGC	59.061	52.381	20.62	11.36	41.10	3.86
1225	1249	2.034066	AGGCCATGAACCACGGTG	59.966	61.111	5.01	0.00	0.00	4.94
1284	1324	2.987149	CAGCGACTACGAATCACAAGTT	59.013	45.455	0.00	0.00	42.66	2.66
1354	1398	3.536570	TGAATCAACGACTCCAACACAA	58.463	40.909	0.00	0.00	0.00	3.33
1355	1399	3.130633	CTGAATCAACGACTCCAACACA	58.869	45.455	0.00	0.00	0.00	3.72
1362	1406	1.698165	TCGTGCTGAATCAACGACTC	58.302	50.000	6.12	0.00	0.00	3.36
1439	1501	7.042051	TCAGTTATCTACTTTGTGCTTGTTCAC	60.042	37.037	0.00	0.00	33.85	3.18
1498	1560	9.571810	GTTCATTGATAATTTGATGTACAAGCA	57.428	29.630	0.00	0.00	39.77	3.91
1499	1561	9.571810	TGTTCATTGATAATTTGATGTACAAGC	57.428	29.630	0.00	0.00	39.77	4.01
1533	1595	7.497249	CCAGCTAAGTGTCTGCTATAATCTTTT	59.503	37.037	0.00	0.00	35.05	2.27
1603	1666	4.077822	AGCCATCACTTCCTTTCTTCAAG	58.922	43.478	0.00	0.00	0.00	3.02
1670	1748	0.039618	GGGCCCTCTTCATTCAACCA	59.960	55.000	17.04	0.00	0.00	3.67
1841	1922	2.221169	TGACTTCTTGAGCGCACATTT	58.779	42.857	11.47	0.00	0.00	2.32
1996	2129	3.849563	TGTATGGGGGTATACTTGCAC	57.150	47.619	2.25	0.00	35.16	4.57
2015	2148	0.746063	TCACTTGCTGGCTTTGGTTG	59.254	50.000	0.00	0.00	0.00	3.77
2064	3129	2.157834	TGTACCATCGGACAACACAC	57.842	50.000	0.00	0.00	0.00	3.82
2172	3736	0.037326	CTGCGCCTTGTGGACTCTAA	60.037	55.000	4.18	0.00	34.57	2.10
2197	3761	8.026607	CACATACAAAATACCAAACAACCTAGG	58.973	37.037	7.41	7.41	0.00	3.02
2216	3781	8.219546	TGAAAAGACAAGATTCAACACATACA	57.780	30.769	0.00	0.00	30.60	2.29
2217	3782	9.334693	GATGAAAAGACAAGATTCAACACATAC	57.665	33.333	0.00	0.00	36.72	2.39
2254	3819	8.099364	ACATTACACAATAAACAAGAGGACAG	57.901	34.615	0.00	0.00	0.00	3.51
2342	3934	2.093500	TCTCCTGACACGGGAATCAATG	60.093	50.000	0.00	0.00	38.58	2.82
2529	4121	3.062763	CCATAATAGCGGAAGACAGCAG	58.937	50.000	0.00	0.00	39.53	4.24
2531	4123	3.060602	GACCATAATAGCGGAAGACAGC	58.939	50.000	0.00	0.00	37.48	4.40
2541	4133	5.924475	ACGTTTAGCATGACCATAATAGC	57.076	39.130	0.00	0.00	0.00	2.97
2560	4337	4.457603	TGCAAGAAACAAGGCATATTACGT	59.542	37.500	0.00	0.00	0.00	3.57
2607	4384	2.110213	GTGGAGACGTTGTGGGCA	59.890	61.111	0.00	0.00	0.00	5.36
2625	4402	1.956477	ACAATGTCCTTGCGCTTCTTT	59.044	42.857	9.73	0.00	38.50	2.52
2833	4610	5.078411	AGATCTTTGACGCATTACAGTCT	57.922	39.130	0.00	0.00	38.16	3.24
2844	4621	6.910536	AAAGGCAATAGTAGATCTTTGACG	57.089	37.500	0.00	0.00	31.95	4.35
2897	4674	5.070580	CCCAAACCCCAATTTAACACACTTA	59.929	40.000	0.00	0.00	0.00	2.24
2951	4730	9.958180	TCATCACCAACTCAGAATTTTATAGAA	57.042	29.630	0.00	0.00	0.00	2.10
3017	4796	4.065088	ACTGATTTGTGTGCGTTAGATGT	58.935	39.130	0.00	0.00	0.00	3.06
3151	4930	3.038417	CCGGCGCCAGATCGATTC	61.038	66.667	28.98	0.00	0.00	2.52
3152	4931	3.536917	TCCGGCGCCAGATCGATT	61.537	61.111	28.98	0.00	0.00	3.34
3153	4932	4.286320	GTCCGGCGCCAGATCGAT	62.286	66.667	28.98	0.00	0.00	3.59
3155	4934	4.592192	ATGTCCGGCGCCAGATCG	62.592	66.667	28.98	11.99	0.00	3.69
3156	4935	2.663188	GATGTCCGGCGCCAGATC	60.663	66.667	28.98	17.38	0.00	2.75
3157	4936	3.469970	TGATGTCCGGCGCCAGAT	61.470	61.111	28.98	12.18	0.00	2.90
3158	4937	4.451150	GTGATGTCCGGCGCCAGA	62.451	66.667	28.98	19.57	0.00	3.86
3159	4938	4.457496	AGTGATGTCCGGCGCCAG	62.457	66.667	28.98	16.96	0.00	4.85
3160	4939	4.758251	CAGTGATGTCCGGCGCCA	62.758	66.667	28.98	7.02	0.00	5.69
3162	4941	3.950794	TTCCAGTGATGTCCGGCGC	62.951	63.158	0.00	0.00	0.00	6.53
3163	4942	1.153369	ATTCCAGTGATGTCCGGCG	60.153	57.895	0.00	0.00	0.00	6.46
3164	4943	1.154205	CGATTCCAGTGATGTCCGGC	61.154	60.000	0.00	0.00	0.00	6.13
3165	4944	0.459899	TCGATTCCAGTGATGTCCGG	59.540	55.000	0.00	0.00	0.00	5.14
3166	4945	2.035193	AGATCGATTCCAGTGATGTCCG	59.965	50.000	0.00	0.00	0.00	4.79
3167	4946	3.388308	CAGATCGATTCCAGTGATGTCC	58.612	50.000	0.00	0.00	0.00	4.02
3168	4947	3.388308	CCAGATCGATTCCAGTGATGTC	58.612	50.000	0.00	0.00	0.00	3.06
3169	4948	2.484417	GCCAGATCGATTCCAGTGATGT	60.484	50.000	0.00	0.00	0.00	3.06
3170	4949	2.141517	GCCAGATCGATTCCAGTGATG	58.858	52.381	0.00	0.00	0.00	3.07
3171	4950	1.269988	CGCCAGATCGATTCCAGTGAT	60.270	52.381	0.00	0.00	0.00	3.06
3172	4951	0.103026	CGCCAGATCGATTCCAGTGA	59.897	55.000	0.00	0.00	0.00	3.41
3173	4952	0.877649	CCGCCAGATCGATTCCAGTG	60.878	60.000	0.00	0.00	0.00	3.66
3174	4953	1.443407	CCGCCAGATCGATTCCAGT	59.557	57.895	0.00	0.00	0.00	4.00
3175	4954	1.301244	CCCGCCAGATCGATTCCAG	60.301	63.158	0.00	0.00	0.00	3.86
3176	4955	2.807107	CCCCGCCAGATCGATTCCA	61.807	63.158	0.00	0.00	0.00	3.53
3177	4956	2.031163	CCCCGCCAGATCGATTCC	59.969	66.667	0.00	0.00	0.00	3.01
3253	5032	4.343323	CATGGTGGTGGGCGGTGA	62.343	66.667	0.00	0.00	0.00	4.02
3549	5329	1.286248	GTGGTGGGAGTGGGAAGTAT	58.714	55.000	0.00	0.00	0.00	2.12

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.