Multiple sequence alignment - TraesCS7D01G256900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G256900 chr7D 100.000 5324 0 0 1 5324 232360104 232365427 0.000000e+00 9832
1 TraesCS7D01G256900 chr7D 98.530 4693 44 9 655 5324 428169892 428174582 0.000000e+00 8261
2 TraesCS7D01G256900 chr7D 80.982 489 93 0 3304 3792 457114183 457114671 6.470000e-104 388
3 TraesCS7D01G256900 chr3A 86.207 1015 118 12 2089 3091 101416683 101415679 0.000000e+00 1079
4 TraesCS7D01G256900 chr3A 74.706 680 127 27 3483 4124 192851419 192852091 1.470000e-65 261
5 TraesCS7D01G256900 chr5B 81.292 1347 180 38 3683 4978 610019488 610020813 0.000000e+00 1026
6 TraesCS7D01G256900 chr5B 78.632 468 82 8 1755 2205 610019038 610019504 1.450000e-75 294
7 TraesCS7D01G256900 chr5B 74.119 738 160 25 1035 1762 610017743 610018459 5.250000e-70 276
8 TraesCS7D01G256900 chr5B 84.314 255 40 0 2097 2351 684890204 684890458 3.180000e-62 250
9 TraesCS7D01G256900 chrUn 80.183 1095 176 29 1279 2349 60538612 60537535 0.000000e+00 782
10 TraesCS7D01G256900 chr1B 78.971 680 138 4 2473 3148 145158806 145159484 4.860000e-125 459
11 TraesCS7D01G256900 chr1B 83.149 451 76 0 3342 3792 6350808 6350358 3.840000e-111 412
12 TraesCS7D01G256900 chr1B 79.756 410 78 4 3386 3793 170581207 170580801 5.220000e-75 292
13 TraesCS7D01G256900 chr1D 75.269 1023 216 31 964 1971 124070188 124071188 2.260000e-123 453
14 TraesCS7D01G256900 chr1D 80.510 549 76 16 4480 5005 124071632 124072172 5.000000e-105 392
15 TraesCS7D01G256900 chr1D 87.302 252 32 0 2125 2376 124071281 124071532 6.750000e-74 289
16 TraesCS7D01G256900 chr4B 81.366 483 89 1 3311 3792 564168366 564168848 5.000000e-105 392
17 TraesCS7D01G256900 chr4B 75.670 448 87 13 1046 1476 415773112 415773554 2.510000e-48 204
18 TraesCS7D01G256900 chr4D 81.757 444 74 5 3321 3764 508532523 508532087 1.090000e-96 364
19 TraesCS7D01G256900 chr6B 80.753 478 79 10 3321 3792 574632856 574632386 1.410000e-95 361
20 TraesCS7D01G256900 chr6B 74.868 760 148 33 2133 2874 669532906 669533640 6.700000e-79 305
21 TraesCS7D01G256900 chr1A 76.380 652 146 6 2505 3150 335551522 335552171 1.420000e-90 344
22 TraesCS7D01G256900 chr3B 74.629 875 167 42 3917 4761 59730121 59729272 8.540000e-88 335
23 TraesCS7D01G256900 chr3B 79.487 195 38 1 2542 2734 11644788 11644594 2.590000e-28 137
24 TraesCS7D01G256900 chr3B 79.592 196 37 2 2542 2734 66885419 66885224 2.590000e-28 137
25 TraesCS7D01G256900 chr4A 79.536 474 70 11 2481 2950 598626806 598627256 4.000000e-81 313
26 TraesCS7D01G256900 chr4A 77.059 510 95 13 984 1476 654419414 654418910 1.890000e-69 274
27 TraesCS7D01G256900 chr4A 76.471 510 98 13 984 1476 123914301 123914805 1.900000e-64 257
28 TraesCS7D01G256900 chr3D 74.835 759 150 31 2133 2874 1701007 1700273 6.700000e-79 305
29 TraesCS7D01G256900 chr7B 77.963 481 106 0 3320 3800 606419815 606420295 8.670000e-78 302
30 TraesCS7D01G256900 chr7B 80.000 195 37 1 2542 2734 614302798 614302604 5.560000e-30 143
31 TraesCS7D01G256900 chr7B 81.765 170 14 8 497 655 202995619 202995782 5.600000e-25 126
32 TraesCS7D01G256900 chr7A 92.994 157 6 2 281 436 244595046 244595198 1.930000e-54 224
33 TraesCS7D01G256900 chr7A 80.071 281 54 1 2088 2366 128919262 128918982 1.940000e-49 207
34 TraesCS7D01G256900 chr7A 77.451 204 40 6 2936 3136 83258304 83258104 3.370000e-22 117
35 TraesCS7D01G256900 chr7A 90.909 88 7 1 513 600 244595233 244595319 3.370000e-22 117
36 TraesCS7D01G256900 chr5A 79.524 210 43 0 2133 2342 611016355 611016146 3.320000e-32 150
37 TraesCS7D01G256900 chr6A 80.420 143 27 1 1697 1838 4557478 4557336 2.030000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G256900 chr7D 232360104 232365427 5323 False 9832 9832 100.000000 1 5324 1 chr7D.!!$F1 5323
1 TraesCS7D01G256900 chr7D 428169892 428174582 4690 False 8261 8261 98.530000 655 5324 1 chr7D.!!$F2 4669
2 TraesCS7D01G256900 chr3A 101415679 101416683 1004 True 1079 1079 86.207000 2089 3091 1 chr3A.!!$R1 1002
3 TraesCS7D01G256900 chr3A 192851419 192852091 672 False 261 261 74.706000 3483 4124 1 chr3A.!!$F1 641
4 TraesCS7D01G256900 chr5B 610017743 610020813 3070 False 532 1026 78.014333 1035 4978 3 chr5B.!!$F2 3943
5 TraesCS7D01G256900 chrUn 60537535 60538612 1077 True 782 782 80.183000 1279 2349 1 chrUn.!!$R1 1070
6 TraesCS7D01G256900 chr1B 145158806 145159484 678 False 459 459 78.971000 2473 3148 1 chr1B.!!$F1 675
7 TraesCS7D01G256900 chr1D 124070188 124072172 1984 False 378 453 81.027000 964 5005 3 chr1D.!!$F1 4041
8 TraesCS7D01G256900 chr6B 669532906 669533640 734 False 305 305 74.868000 2133 2874 1 chr6B.!!$F1 741
9 TraesCS7D01G256900 chr1A 335551522 335552171 649 False 344 344 76.380000 2505 3150 1 chr1A.!!$F1 645
10 TraesCS7D01G256900 chr3B 59729272 59730121 849 True 335 335 74.629000 3917 4761 1 chr3B.!!$R2 844
11 TraesCS7D01G256900 chr4A 654418910 654419414 504 True 274 274 77.059000 984 1476 1 chr4A.!!$R1 492
12 TraesCS7D01G256900 chr4A 123914301 123914805 504 False 257 257 76.471000 984 1476 1 chr4A.!!$F1 492
13 TraesCS7D01G256900 chr3D 1700273 1701007 734 True 305 305 74.835000 2133 2874 1 chr3D.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.026544 TGTGCCGAAACGAAAACGAC 59.973 50.0 0.00 0.0 0.00 4.34 F
90 91 0.026544 GTGCCGAAACGAAAACGACA 59.973 50.0 0.00 0.0 0.00 4.35 F
321 322 0.032540 GATGCATTTGGGATTCGGCC 59.967 55.0 0.00 0.0 0.00 6.13 F
370 371 0.111253 AAAGAAGTCACAGGGCCTGG 59.889 55.0 35.34 24.0 35.51 4.45 F
502 503 0.178932 AGAGAGGGGTGCACACACTA 60.179 55.0 22.94 0.0 46.57 2.74 F
503 504 0.247736 GAGAGGGGTGCACACACTAG 59.752 60.0 22.94 0.0 46.57 2.57 F
540 541 0.250727 GGCACCACTAGAAGCCACAA 60.251 55.0 0.00 0.0 46.26 3.33 F
640 641 0.391228 TGCAGCCGTGACTGAAACTA 59.609 50.0 1.88 0.0 40.25 2.24 F
1310 1328 0.887933 GGCTCCAAAAGGATCGCAAA 59.112 50.0 0.00 0.0 0.00 3.68 F
3384 4034 2.043604 CTGCCAGACACCACTCACCA 62.044 60.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2700 0.405198 TCAACAGGTGCATGTCCCAT 59.595 50.000 0.00 0.0 31.50 4.00 R
2888 3538 7.395772 TGCTTCAGTTAACCATATCAAATTCCA 59.604 33.333 0.88 0.0 0.00 3.53 R
3056 3706 5.296780 TGAAAGTGTCAACTGTTTCATCTCC 59.703 40.000 0.00 0.0 36.51 3.71 R
3123 3773 4.067896 ACCTGTGAGTATTGTTTGCAGAG 58.932 43.478 0.00 0.0 0.00 3.35 R
3184 3834 6.248210 CCGATTTTGTTTGTTGTTTTTCTTGC 59.752 34.615 0.00 0.0 0.00 4.01 R
3239 3889 6.783708 AAGAGGATTCCAAGACTACTACAG 57.216 41.667 5.29 0.0 0.00 2.74 R
3324 3974 1.799403 CCATCGCTCTGCATTGATCTC 59.201 52.381 0.00 0.0 0.00 2.75 R
3723 4381 5.461737 CCTCTATCGAAAAGAAGTCTCATGC 59.538 44.000 0.00 0.0 0.00 4.06 R
3754 4412 2.032377 GCGTCTCTCCTCATAGTTCTCG 60.032 54.545 0.00 0.0 0.00 4.04 R
4863 5578 1.535649 CGGCTTGTTGCATGTGTTTCA 60.536 47.619 0.00 0.0 45.15 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.937696 AAAAACCAAGCAAAAACCGAAG 57.062 36.364 0.00 0.00 0.00 3.79
34 35 3.878160 AAACCAAGCAAAAACCGAAGA 57.122 38.095 0.00 0.00 0.00 2.87
35 36 3.436700 AACCAAGCAAAAACCGAAGAG 57.563 42.857 0.00 0.00 0.00 2.85
36 37 1.067060 ACCAAGCAAAAACCGAAGAGC 59.933 47.619 0.00 0.00 0.00 4.09
37 38 1.602920 CCAAGCAAAAACCGAAGAGCC 60.603 52.381 0.00 0.00 0.00 4.70
38 39 1.066908 CAAGCAAAAACCGAAGAGCCA 59.933 47.619 0.00 0.00 0.00 4.75
39 40 1.620822 AGCAAAAACCGAAGAGCCAT 58.379 45.000 0.00 0.00 0.00 4.40
40 41 1.963515 AGCAAAAACCGAAGAGCCATT 59.036 42.857 0.00 0.00 0.00 3.16
41 42 3.153919 AGCAAAAACCGAAGAGCCATTA 58.846 40.909 0.00 0.00 0.00 1.90
42 43 3.572255 AGCAAAAACCGAAGAGCCATTAA 59.428 39.130 0.00 0.00 0.00 1.40
43 44 4.038642 AGCAAAAACCGAAGAGCCATTAAA 59.961 37.500 0.00 0.00 0.00 1.52
44 45 4.385748 GCAAAAACCGAAGAGCCATTAAAG 59.614 41.667 0.00 0.00 0.00 1.85
45 46 3.850122 AAACCGAAGAGCCATTAAAGC 57.150 42.857 0.00 0.00 0.00 3.51
46 47 2.489938 ACCGAAGAGCCATTAAAGCA 57.510 45.000 3.94 0.00 0.00 3.91
47 48 2.790433 ACCGAAGAGCCATTAAAGCAA 58.210 42.857 3.94 0.00 0.00 3.91
48 49 3.153919 ACCGAAGAGCCATTAAAGCAAA 58.846 40.909 3.94 0.00 0.00 3.68
49 50 3.572255 ACCGAAGAGCCATTAAAGCAAAA 59.428 39.130 3.94 0.00 0.00 2.44
50 51 4.038642 ACCGAAGAGCCATTAAAGCAAAAA 59.961 37.500 3.94 0.00 0.00 1.94
76 77 7.810766 AAATTATACTCAAAAACATGTGCCG 57.189 32.000 0.00 0.00 0.00 5.69
77 78 6.751514 ATTATACTCAAAAACATGTGCCGA 57.248 33.333 0.00 0.00 0.00 5.54
78 79 6.561737 TTATACTCAAAAACATGTGCCGAA 57.438 33.333 0.00 0.00 0.00 4.30
79 80 3.791973 ACTCAAAAACATGTGCCGAAA 57.208 38.095 0.00 0.00 0.00 3.46
80 81 3.443976 ACTCAAAAACATGTGCCGAAAC 58.556 40.909 0.00 0.00 0.00 2.78
81 82 2.455032 TCAAAAACATGTGCCGAAACG 58.545 42.857 0.00 0.00 0.00 3.60
82 83 2.097629 TCAAAAACATGTGCCGAAACGA 59.902 40.909 0.00 0.00 0.00 3.85
83 84 2.853731 AAAACATGTGCCGAAACGAA 57.146 40.000 0.00 0.00 0.00 3.85
84 85 2.853731 AAACATGTGCCGAAACGAAA 57.146 40.000 0.00 0.00 0.00 3.46
85 86 2.853731 AACATGTGCCGAAACGAAAA 57.146 40.000 0.00 0.00 0.00 2.29
86 87 2.113910 ACATGTGCCGAAACGAAAAC 57.886 45.000 0.00 0.00 0.00 2.43
87 88 1.041726 CATGTGCCGAAACGAAAACG 58.958 50.000 0.00 0.00 0.00 3.60
88 89 0.938713 ATGTGCCGAAACGAAAACGA 59.061 45.000 0.00 0.00 0.00 3.85
89 90 0.026544 TGTGCCGAAACGAAAACGAC 59.973 50.000 0.00 0.00 0.00 4.34
90 91 0.026544 GTGCCGAAACGAAAACGACA 59.973 50.000 0.00 0.00 0.00 4.35
91 92 0.938713 TGCCGAAACGAAAACGACAT 59.061 45.000 0.00 0.00 0.00 3.06
92 93 1.314581 GCCGAAACGAAAACGACATG 58.685 50.000 0.00 0.00 0.00 3.21
93 94 1.314581 CCGAAACGAAAACGACATGC 58.685 50.000 0.00 0.00 0.00 4.06
94 95 1.070175 CCGAAACGAAAACGACATGCT 60.070 47.619 0.00 0.00 0.00 3.79
95 96 2.222624 CGAAACGAAAACGACATGCTC 58.777 47.619 0.00 0.00 0.00 4.26
99 100 0.179250 CGAAAACGACATGCTCGGTG 60.179 55.000 17.75 1.58 43.42 4.94
100 101 0.865769 GAAAACGACATGCTCGGTGT 59.134 50.000 17.75 9.56 43.42 4.16
101 102 0.586319 AAAACGACATGCTCGGTGTG 59.414 50.000 17.75 0.00 43.42 3.82
102 103 1.227999 AAACGACATGCTCGGTGTGG 61.228 55.000 17.75 0.00 43.42 4.17
103 104 3.490759 CGACATGCTCGGTGTGGC 61.491 66.667 9.07 0.00 38.87 5.01
104 105 2.358615 GACATGCTCGGTGTGGCA 60.359 61.111 0.00 0.00 42.80 4.92
105 106 1.965930 GACATGCTCGGTGTGGCAA 60.966 57.895 0.00 0.00 41.90 4.52
106 107 1.915614 GACATGCTCGGTGTGGCAAG 61.916 60.000 0.00 0.00 41.90 4.01
107 108 3.058160 ATGCTCGGTGTGGCAAGC 61.058 61.111 1.19 1.19 41.90 4.01
110 111 3.716006 CTCGGTGTGGCAAGCGTG 61.716 66.667 16.48 12.32 41.61 5.34
119 120 2.097160 GCAAGCGTGCGACATCTG 59.903 61.111 9.33 0.00 41.93 2.90
120 121 2.780643 CAAGCGTGCGACATCTGG 59.219 61.111 0.00 0.00 0.00 3.86
121 122 3.121030 AAGCGTGCGACATCTGGC 61.121 61.111 0.00 0.00 0.00 4.85
122 123 3.881952 AAGCGTGCGACATCTGGCA 62.882 57.895 0.00 0.00 36.70 4.92
123 124 3.857854 GCGTGCGACATCTGGCAG 61.858 66.667 8.58 8.58 40.32 4.85
124 125 2.125952 CGTGCGACATCTGGCAGA 60.126 61.111 21.19 21.19 40.32 4.26
125 126 2.163390 CGTGCGACATCTGGCAGAG 61.163 63.158 23.24 16.27 40.32 3.35
126 127 1.079543 GTGCGACATCTGGCAGAGT 60.080 57.895 23.24 19.20 40.32 3.24
127 128 0.671781 GTGCGACATCTGGCAGAGTT 60.672 55.000 23.24 11.80 40.32 3.01
128 129 0.671472 TGCGACATCTGGCAGAGTTG 60.671 55.000 23.24 21.73 33.52 3.16
129 130 1.364626 GCGACATCTGGCAGAGTTGG 61.365 60.000 23.24 13.57 0.00 3.77
130 131 0.742281 CGACATCTGGCAGAGTTGGG 60.742 60.000 23.24 11.54 0.00 4.12
131 132 0.393537 GACATCTGGCAGAGTTGGGG 60.394 60.000 23.24 9.88 0.00 4.96
132 133 1.751927 CATCTGGCAGAGTTGGGGC 60.752 63.158 23.24 0.00 0.00 5.80
133 134 3.335356 ATCTGGCAGAGTTGGGGCG 62.335 63.158 23.24 0.00 0.00 6.13
156 157 4.758251 CATGGCGTCGTGGGAGCA 62.758 66.667 0.00 0.00 0.00 4.26
157 158 4.760047 ATGGCGTCGTGGGAGCAC 62.760 66.667 0.00 0.00 0.00 4.40
166 167 4.357947 TGGGAGCACTCGCACGTC 62.358 66.667 12.84 0.00 45.71 4.34
167 168 4.357947 GGGAGCACTCGCACGTCA 62.358 66.667 9.61 0.00 42.27 4.35
168 169 2.807045 GGAGCACTCGCACGTCAG 60.807 66.667 0.00 0.00 42.27 3.51
169 170 2.807045 GAGCACTCGCACGTCAGG 60.807 66.667 0.00 0.00 42.27 3.86
170 171 4.363990 AGCACTCGCACGTCAGGG 62.364 66.667 0.00 0.00 42.27 4.45
172 173 3.680786 CACTCGCACGTCAGGGGA 61.681 66.667 0.00 0.00 0.00 4.81
174 175 3.374402 CTCGCACGTCAGGGGAGT 61.374 66.667 9.48 0.00 39.64 3.85
175 176 3.633094 CTCGCACGTCAGGGGAGTG 62.633 68.421 9.48 0.00 39.64 3.51
176 177 3.680786 CGCACGTCAGGGGAGTGA 61.681 66.667 0.00 0.00 38.06 3.41
177 178 2.262915 GCACGTCAGGGGAGTGAG 59.737 66.667 0.00 0.00 38.06 3.51
178 179 2.574955 GCACGTCAGGGGAGTGAGT 61.575 63.158 0.00 0.00 38.06 3.41
179 180 1.248785 GCACGTCAGGGGAGTGAGTA 61.249 60.000 0.00 0.00 38.06 2.59
180 181 1.254026 CACGTCAGGGGAGTGAGTAA 58.746 55.000 0.00 0.00 38.06 2.24
181 182 1.616865 CACGTCAGGGGAGTGAGTAAA 59.383 52.381 0.00 0.00 38.06 2.01
182 183 1.617357 ACGTCAGGGGAGTGAGTAAAC 59.383 52.381 0.00 0.00 0.00 2.01
183 184 1.067071 CGTCAGGGGAGTGAGTAAACC 60.067 57.143 0.00 0.00 0.00 3.27
184 185 1.278413 GTCAGGGGAGTGAGTAAACCC 59.722 57.143 0.00 0.00 41.80 4.11
189 190 4.645863 GGGGAGTGAGTAAACCCTTAAA 57.354 45.455 0.00 0.00 41.79 1.52
190 191 5.188988 GGGGAGTGAGTAAACCCTTAAAT 57.811 43.478 0.00 0.00 41.79 1.40
191 192 6.317663 GGGGAGTGAGTAAACCCTTAAATA 57.682 41.667 0.00 0.00 41.79 1.40
192 193 6.354938 GGGGAGTGAGTAAACCCTTAAATAG 58.645 44.000 0.00 0.00 41.79 1.73
193 194 6.069789 GGGGAGTGAGTAAACCCTTAAATAGT 60.070 42.308 0.00 0.00 41.79 2.12
194 195 7.046652 GGGAGTGAGTAAACCCTTAAATAGTC 58.953 42.308 0.00 0.00 39.28 2.59
195 196 7.092979 GGGAGTGAGTAAACCCTTAAATAGTCT 60.093 40.741 0.00 0.00 39.28 3.24
196 197 8.319881 GGAGTGAGTAAACCCTTAAATAGTCTT 58.680 37.037 0.00 0.00 0.00 3.01
197 198 9.722184 GAGTGAGTAAACCCTTAAATAGTCTTT 57.278 33.333 0.00 0.00 0.00 2.52
223 224 9.603921 TTTTTAGGTGAATTAACCGTCCTATAG 57.396 33.333 6.31 0.00 45.53 1.31
224 225 7.902920 TTAGGTGAATTAACCGTCCTATAGT 57.097 36.000 6.31 0.00 45.53 2.12
225 226 6.402456 AGGTGAATTAACCGTCCTATAGTC 57.598 41.667 6.31 0.00 45.53 2.59
226 227 5.303845 AGGTGAATTAACCGTCCTATAGTCC 59.696 44.000 6.31 0.00 45.53 3.85
227 228 5.303845 GGTGAATTAACCGTCCTATAGTCCT 59.696 44.000 0.00 0.00 0.00 3.85
228 229 6.183360 GGTGAATTAACCGTCCTATAGTCCTT 60.183 42.308 0.00 0.00 0.00 3.36
229 230 7.270779 GTGAATTAACCGTCCTATAGTCCTTT 58.729 38.462 0.00 0.00 0.00 3.11
230 231 7.767659 GTGAATTAACCGTCCTATAGTCCTTTT 59.232 37.037 0.00 0.00 0.00 2.27
231 232 8.323567 TGAATTAACCGTCCTATAGTCCTTTTT 58.676 33.333 0.00 0.00 0.00 1.94
232 233 8.502105 AATTAACCGTCCTATAGTCCTTTTTG 57.498 34.615 0.00 0.00 0.00 2.44
233 234 5.494390 AACCGTCCTATAGTCCTTTTTGT 57.506 39.130 0.00 0.00 0.00 2.83
234 235 5.494390 ACCGTCCTATAGTCCTTTTTGTT 57.506 39.130 0.00 0.00 0.00 2.83
235 236 5.243207 ACCGTCCTATAGTCCTTTTTGTTG 58.757 41.667 0.00 0.00 0.00 3.33
236 237 5.221783 ACCGTCCTATAGTCCTTTTTGTTGT 60.222 40.000 0.00 0.00 0.00 3.32
237 238 5.704053 CCGTCCTATAGTCCTTTTTGTTGTT 59.296 40.000 0.00 0.00 0.00 2.83
238 239 6.348213 CCGTCCTATAGTCCTTTTTGTTGTTG 60.348 42.308 0.00 0.00 0.00 3.33
239 240 6.425721 CGTCCTATAGTCCTTTTTGTTGTTGA 59.574 38.462 0.00 0.00 0.00 3.18
240 241 7.360101 CGTCCTATAGTCCTTTTTGTTGTTGAG 60.360 40.741 0.00 0.00 0.00 3.02
241 242 6.430000 TCCTATAGTCCTTTTTGTTGTTGAGC 59.570 38.462 0.00 0.00 0.00 4.26
242 243 6.206634 CCTATAGTCCTTTTTGTTGTTGAGCA 59.793 38.462 0.00 0.00 0.00 4.26
243 244 4.799564 AGTCCTTTTTGTTGTTGAGCAA 57.200 36.364 0.00 0.00 34.16 3.91
244 245 5.146010 AGTCCTTTTTGTTGTTGAGCAAA 57.854 34.783 0.00 0.00 39.03 3.68
245 246 5.546526 AGTCCTTTTTGTTGTTGAGCAAAA 58.453 33.333 0.00 0.00 41.15 2.44
246 247 5.408299 AGTCCTTTTTGTTGTTGAGCAAAAC 59.592 36.000 0.00 0.00 42.13 2.43
247 248 4.693095 TCCTTTTTGTTGTTGAGCAAAACC 59.307 37.500 0.00 0.00 42.13 3.27
248 249 4.435386 CCTTTTTGTTGTTGAGCAAAACCG 60.435 41.667 0.00 0.00 42.13 4.44
249 250 3.305398 TTTGTTGTTGAGCAAAACCGT 57.695 38.095 0.00 0.00 39.03 4.83
250 251 3.305398 TTGTTGTTGAGCAAAACCGTT 57.695 38.095 0.00 0.00 39.03 4.44
251 252 4.436242 TTGTTGTTGAGCAAAACCGTTA 57.564 36.364 0.00 0.00 39.03 3.18
252 253 4.436242 TGTTGTTGAGCAAAACCGTTAA 57.564 36.364 0.00 0.00 39.03 2.01
253 254 4.806330 TGTTGTTGAGCAAAACCGTTAAA 58.194 34.783 0.00 0.00 39.03 1.52
254 255 5.411781 TGTTGTTGAGCAAAACCGTTAAAT 58.588 33.333 0.00 0.00 39.03 1.40
255 256 6.561614 TGTTGTTGAGCAAAACCGTTAAATA 58.438 32.000 0.00 0.00 39.03 1.40
256 257 6.693545 TGTTGTTGAGCAAAACCGTTAAATAG 59.306 34.615 0.00 0.00 39.03 1.73
257 258 6.380095 TGTTGAGCAAAACCGTTAAATAGT 57.620 33.333 0.00 0.00 0.00 2.12
258 259 6.432107 TGTTGAGCAAAACCGTTAAATAGTC 58.568 36.000 0.00 0.00 0.00 2.59
259 260 6.038382 TGTTGAGCAAAACCGTTAAATAGTCA 59.962 34.615 0.00 0.00 0.00 3.41
260 261 6.811253 TGAGCAAAACCGTTAAATAGTCAT 57.189 33.333 0.00 0.00 0.00 3.06
261 262 7.209471 TGAGCAAAACCGTTAAATAGTCATT 57.791 32.000 0.00 0.00 0.00 2.57
262 263 7.302524 TGAGCAAAACCGTTAAATAGTCATTC 58.697 34.615 0.00 0.00 0.00 2.67
263 264 7.174253 TGAGCAAAACCGTTAAATAGTCATTCT 59.826 33.333 0.00 0.00 0.00 2.40
264 265 7.305474 AGCAAAACCGTTAAATAGTCATTCTG 58.695 34.615 0.00 0.00 0.00 3.02
265 266 6.033513 GCAAAACCGTTAAATAGTCATTCTGC 59.966 38.462 0.00 0.00 0.00 4.26
266 267 5.813080 AACCGTTAAATAGTCATTCTGCC 57.187 39.130 0.00 0.00 0.00 4.85
267 268 4.839121 ACCGTTAAATAGTCATTCTGCCA 58.161 39.130 0.00 0.00 0.00 4.92
268 269 5.250200 ACCGTTAAATAGTCATTCTGCCAA 58.750 37.500 0.00 0.00 0.00 4.52
269 270 5.885912 ACCGTTAAATAGTCATTCTGCCAAT 59.114 36.000 0.00 0.00 0.00 3.16
270 271 6.377146 ACCGTTAAATAGTCATTCTGCCAATT 59.623 34.615 0.00 0.00 0.00 2.32
271 272 6.692681 CCGTTAAATAGTCATTCTGCCAATTG 59.307 38.462 0.00 0.00 0.00 2.32
272 273 7.250569 CGTTAAATAGTCATTCTGCCAATTGT 58.749 34.615 4.43 0.00 0.00 2.71
273 274 8.394877 CGTTAAATAGTCATTCTGCCAATTGTA 58.605 33.333 4.43 0.00 0.00 2.41
274 275 9.503427 GTTAAATAGTCATTCTGCCAATTGTAC 57.497 33.333 4.43 0.00 0.00 2.90
275 276 5.991328 ATAGTCATTCTGCCAATTGTACG 57.009 39.130 4.43 0.00 0.00 3.67
276 277 2.420022 AGTCATTCTGCCAATTGTACGC 59.580 45.455 4.43 1.34 0.00 4.42
277 278 2.161410 GTCATTCTGCCAATTGTACGCA 59.839 45.455 4.43 6.21 0.00 5.24
278 279 2.161410 TCATTCTGCCAATTGTACGCAC 59.839 45.455 4.43 0.00 0.00 5.34
279 280 0.515127 TTCTGCCAATTGTACGCACG 59.485 50.000 4.43 2.38 0.00 5.34
280 281 0.601576 TCTGCCAATTGTACGCACGT 60.602 50.000 4.43 0.00 0.00 4.49
281 282 0.237235 CTGCCAATTGTACGCACGTT 59.763 50.000 0.00 0.00 0.00 3.99
282 283 0.040870 TGCCAATTGTACGCACGTTG 60.041 50.000 0.00 0.00 0.00 4.10
283 284 0.236187 GCCAATTGTACGCACGTTGA 59.764 50.000 0.00 0.00 0.00 3.18
284 285 1.334239 GCCAATTGTACGCACGTTGAA 60.334 47.619 0.00 0.00 0.00 2.69
285 286 2.303537 CCAATTGTACGCACGTTGAAC 58.696 47.619 0.00 0.00 0.00 3.18
297 298 2.669708 CGTTGAACGCACAAACAAAC 57.330 45.000 4.26 0.00 33.65 2.93
298 299 1.979469 CGTTGAACGCACAAACAAACA 59.021 42.857 4.26 0.00 33.65 2.83
299 300 2.596419 CGTTGAACGCACAAACAAACAT 59.404 40.909 4.26 0.00 33.65 2.71
300 301 3.539210 CGTTGAACGCACAAACAAACATG 60.539 43.478 4.26 0.00 33.65 3.21
301 302 1.923204 TGAACGCACAAACAAACATGC 59.077 42.857 0.00 0.00 34.66 4.06
305 306 2.841070 GCACAAACAAACATGCGATG 57.159 45.000 0.00 0.00 0.00 3.84
306 307 1.136557 GCACAAACAAACATGCGATGC 60.137 47.619 0.00 0.00 0.00 3.91
307 308 2.125685 CACAAACAAACATGCGATGCA 58.874 42.857 0.00 0.00 44.86 3.96
318 319 0.381445 TGCGATGCATTTGGGATTCG 59.619 50.000 0.00 0.00 31.71 3.34
319 320 0.318107 GCGATGCATTTGGGATTCGG 60.318 55.000 0.00 0.00 0.00 4.30
320 321 0.318107 CGATGCATTTGGGATTCGGC 60.318 55.000 0.00 0.00 0.00 5.54
321 322 0.032540 GATGCATTTGGGATTCGGCC 59.967 55.000 0.00 0.00 0.00 6.13
330 331 4.256090 GATTCGGCCCATGCGCAC 62.256 66.667 14.90 0.00 38.85 5.34
344 345 2.202544 GCACCACGAGAGCGAGAG 60.203 66.667 0.00 0.00 41.64 3.20
345 346 2.691771 GCACCACGAGAGCGAGAGA 61.692 63.158 0.00 0.00 41.64 3.10
346 347 1.135731 CACCACGAGAGCGAGAGAC 59.864 63.158 0.00 0.00 41.64 3.36
347 348 2.392181 ACCACGAGAGCGAGAGACG 61.392 63.158 0.00 0.00 45.66 4.18
348 349 2.101233 CCACGAGAGCGAGAGACGA 61.101 63.158 0.00 0.00 45.77 4.20
349 350 1.059681 CACGAGAGCGAGAGACGAC 59.940 63.158 0.00 0.00 45.77 4.34
350 351 1.374378 ACGAGAGCGAGAGACGACA 60.374 57.895 0.00 0.00 45.77 4.35
351 352 0.949588 ACGAGAGCGAGAGACGACAA 60.950 55.000 0.00 0.00 45.77 3.18
352 353 0.166161 CGAGAGCGAGAGACGACAAA 59.834 55.000 0.00 0.00 45.77 2.83
353 354 1.399855 CGAGAGCGAGAGACGACAAAA 60.400 52.381 0.00 0.00 45.77 2.44
354 355 2.246789 GAGAGCGAGAGACGACAAAAG 58.753 52.381 0.00 0.00 45.77 2.27
355 356 1.880675 AGAGCGAGAGACGACAAAAGA 59.119 47.619 0.00 0.00 45.77 2.52
356 357 2.293677 AGAGCGAGAGACGACAAAAGAA 59.706 45.455 0.00 0.00 45.77 2.52
357 358 2.659279 GAGCGAGAGACGACAAAAGAAG 59.341 50.000 0.00 0.00 45.77 2.85
358 359 2.034812 AGCGAGAGACGACAAAAGAAGT 59.965 45.455 0.00 0.00 45.77 3.01
359 360 2.405690 GCGAGAGACGACAAAAGAAGTC 59.594 50.000 0.00 0.00 45.77 3.01
360 361 3.629058 CGAGAGACGACAAAAGAAGTCA 58.371 45.455 0.00 0.00 45.77 3.41
361 362 3.422546 CGAGAGACGACAAAAGAAGTCAC 59.577 47.826 0.00 0.00 45.77 3.67
362 363 4.360563 GAGAGACGACAAAAGAAGTCACA 58.639 43.478 0.00 0.00 35.77 3.58
363 364 4.363999 AGAGACGACAAAAGAAGTCACAG 58.636 43.478 0.00 0.00 35.77 3.66
364 365 3.458189 AGACGACAAAAGAAGTCACAGG 58.542 45.455 0.00 0.00 35.77 4.00
365 366 2.544267 GACGACAAAAGAAGTCACAGGG 59.456 50.000 0.00 0.00 35.77 4.45
366 367 1.264288 CGACAAAAGAAGTCACAGGGC 59.736 52.381 0.00 0.00 35.77 5.19
367 368 1.609072 GACAAAAGAAGTCACAGGGCC 59.391 52.381 0.00 0.00 36.06 5.80
368 369 1.215423 ACAAAAGAAGTCACAGGGCCT 59.785 47.619 0.00 0.00 0.00 5.19
369 370 1.610522 CAAAAGAAGTCACAGGGCCTG 59.389 52.381 31.62 31.62 37.52 4.85
370 371 0.111253 AAAGAAGTCACAGGGCCTGG 59.889 55.000 35.34 24.00 35.51 4.45
371 372 1.062488 AAGAAGTCACAGGGCCTGGT 61.062 55.000 35.34 19.22 35.51 4.00
372 373 1.062488 AGAAGTCACAGGGCCTGGTT 61.062 55.000 35.34 22.43 35.51 3.67
373 374 0.606673 GAAGTCACAGGGCCTGGTTC 60.607 60.000 35.34 25.58 35.51 3.62
374 375 2.358737 GTCACAGGGCCTGGTTCG 60.359 66.667 35.34 20.80 35.51 3.95
375 376 4.329545 TCACAGGGCCTGGTTCGC 62.330 66.667 35.34 0.00 35.51 4.70
376 377 4.335647 CACAGGGCCTGGTTCGCT 62.336 66.667 35.34 12.48 35.51 4.93
377 378 4.021925 ACAGGGCCTGGTTCGCTC 62.022 66.667 35.34 0.00 35.51 5.03
384 385 2.582226 CTGGTTCGCTCGCGCATA 60.582 61.111 8.75 0.00 39.59 3.14
385 386 2.125872 TGGTTCGCTCGCGCATAA 60.126 55.556 8.75 0.00 39.59 1.90
386 387 1.490693 CTGGTTCGCTCGCGCATAAT 61.491 55.000 8.75 0.00 39.59 1.28
387 388 0.249114 TGGTTCGCTCGCGCATAATA 60.249 50.000 8.75 0.00 39.59 0.98
388 389 0.856641 GGTTCGCTCGCGCATAATAA 59.143 50.000 8.75 0.00 39.59 1.40
389 390 1.136611 GGTTCGCTCGCGCATAATAAG 60.137 52.381 8.75 0.00 39.59 1.73
390 391 1.136611 GTTCGCTCGCGCATAATAAGG 60.137 52.381 8.75 0.00 39.59 2.69
391 392 1.130613 CGCTCGCGCATAATAAGGC 59.869 57.895 8.75 0.00 35.30 4.35
392 393 1.497722 GCTCGCGCATAATAAGGCC 59.502 57.895 8.75 0.00 35.78 5.19
393 394 0.951040 GCTCGCGCATAATAAGGCCT 60.951 55.000 8.75 0.00 35.78 5.19
394 395 1.071605 CTCGCGCATAATAAGGCCTC 58.928 55.000 5.23 0.00 0.00 4.70
395 396 0.679505 TCGCGCATAATAAGGCCTCT 59.320 50.000 5.23 0.00 0.00 3.69
396 397 1.070134 TCGCGCATAATAAGGCCTCTT 59.930 47.619 5.23 5.65 37.03 2.85
397 398 1.461127 CGCGCATAATAAGGCCTCTTC 59.539 52.381 5.23 0.00 34.59 2.87
398 399 1.807142 GCGCATAATAAGGCCTCTTCC 59.193 52.381 5.23 0.00 34.59 3.46
399 400 2.069273 CGCATAATAAGGCCTCTTCCG 58.931 52.381 5.23 3.76 34.59 4.30
400 401 2.427506 GCATAATAAGGCCTCTTCCGG 58.572 52.381 5.23 0.00 34.59 5.14
427 428 3.171388 GGCAGGACCATCCCGGAT 61.171 66.667 0.73 0.00 37.19 4.18
428 429 2.427753 GCAGGACCATCCCGGATC 59.572 66.667 0.73 0.00 37.19 3.36
429 430 2.737180 CAGGACCATCCCGGATCG 59.263 66.667 0.73 0.00 37.19 3.69
430 431 2.134287 CAGGACCATCCCGGATCGT 61.134 63.158 0.73 0.00 37.19 3.73
431 432 1.833049 AGGACCATCCCGGATCGTC 60.833 63.158 14.98 14.98 37.19 4.20
432 433 1.833049 GGACCATCCCGGATCGTCT 60.833 63.158 20.60 0.00 38.63 4.18
433 434 1.660917 GACCATCCCGGATCGTCTC 59.339 63.158 15.79 0.00 38.63 3.36
434 435 2.131294 GACCATCCCGGATCGTCTCG 62.131 65.000 15.79 0.00 38.63 4.04
435 436 2.194212 CCATCCCGGATCGTCTCGT 61.194 63.158 0.73 0.00 36.56 4.18
436 437 1.008424 CATCCCGGATCGTCTCGTG 60.008 63.158 0.73 0.00 0.00 4.35
437 438 1.153025 ATCCCGGATCGTCTCGTGA 60.153 57.895 0.73 0.00 0.00 4.35
438 439 1.445716 ATCCCGGATCGTCTCGTGAC 61.446 60.000 0.73 7.56 39.70 3.67
450 451 2.051879 CTCGTGACGAGCAAAAGAGA 57.948 50.000 22.72 0.00 46.75 3.10
451 452 1.982223 CTCGTGACGAGCAAAAGAGAG 59.018 52.381 22.72 0.00 46.75 3.20
452 453 1.607148 TCGTGACGAGCAAAAGAGAGA 59.393 47.619 2.39 0.00 0.00 3.10
453 454 1.982223 CGTGACGAGCAAAAGAGAGAG 59.018 52.381 0.00 0.00 0.00 3.20
454 455 2.350868 CGTGACGAGCAAAAGAGAGAGA 60.351 50.000 0.00 0.00 0.00 3.10
455 456 3.671971 CGTGACGAGCAAAAGAGAGAGAT 60.672 47.826 0.00 0.00 0.00 2.75
456 457 4.241681 GTGACGAGCAAAAGAGAGAGATT 58.758 43.478 0.00 0.00 0.00 2.40
457 458 4.688413 GTGACGAGCAAAAGAGAGAGATTT 59.312 41.667 0.00 0.00 0.00 2.17
458 459 4.687948 TGACGAGCAAAAGAGAGAGATTTG 59.312 41.667 0.00 0.00 37.17 2.32
489 490 4.605967 GCGCGCGAGAGAGAGAGG 62.606 72.222 37.18 0.00 31.43 3.69
490 491 3.947841 CGCGCGAGAGAGAGAGGG 61.948 72.222 28.94 0.00 31.43 4.30
491 492 3.591835 GCGCGAGAGAGAGAGGGG 61.592 72.222 12.10 0.00 0.00 4.79
492 493 2.124487 CGCGAGAGAGAGAGGGGT 60.124 66.667 0.00 0.00 0.00 4.95
493 494 2.477176 CGCGAGAGAGAGAGGGGTG 61.477 68.421 0.00 0.00 0.00 4.61
494 495 2.781158 GCGAGAGAGAGAGGGGTGC 61.781 68.421 0.00 0.00 0.00 5.01
495 496 1.379176 CGAGAGAGAGAGGGGTGCA 60.379 63.158 0.00 0.00 0.00 4.57
496 497 1.662438 CGAGAGAGAGAGGGGTGCAC 61.662 65.000 8.80 8.80 0.00 4.57
497 498 0.613292 GAGAGAGAGAGGGGTGCACA 60.613 60.000 20.43 0.00 0.00 4.57
498 499 0.902516 AGAGAGAGAGGGGTGCACAC 60.903 60.000 20.43 16.45 0.00 3.82
499 500 1.152247 AGAGAGAGGGGTGCACACA 60.152 57.895 22.94 0.00 0.00 3.72
500 501 1.004440 GAGAGAGGGGTGCACACAC 60.004 63.158 22.94 14.27 46.66 3.82
501 502 1.460305 AGAGAGGGGTGCACACACT 60.460 57.895 22.94 19.00 46.57 3.55
502 503 0.178932 AGAGAGGGGTGCACACACTA 60.179 55.000 22.94 0.00 46.57 2.74
503 504 0.247736 GAGAGGGGTGCACACACTAG 59.752 60.000 22.94 0.00 46.57 2.57
504 505 1.376037 GAGGGGTGCACACACTAGC 60.376 63.158 22.94 2.29 46.57 3.42
505 506 1.831652 GAGGGGTGCACACACTAGCT 61.832 60.000 22.94 8.11 46.57 3.32
506 507 1.672356 GGGGTGCACACACTAGCTG 60.672 63.158 22.94 0.00 46.57 4.24
507 508 2.328099 GGGTGCACACACTAGCTGC 61.328 63.158 20.43 0.00 46.57 5.25
508 509 2.328099 GGTGCACACACTAGCTGCC 61.328 63.158 20.43 0.00 46.57 4.85
509 510 1.302033 GTGCACACACTAGCTGCCT 60.302 57.895 13.17 0.00 43.85 4.75
510 511 1.301953 TGCACACACTAGCTGCCTG 60.302 57.895 0.00 0.00 0.00 4.85
511 512 2.037136 GCACACACTAGCTGCCTGG 61.037 63.158 0.00 0.00 0.00 4.45
512 513 2.037136 CACACACTAGCTGCCTGGC 61.037 63.158 12.87 12.87 0.00 4.85
513 514 2.219875 ACACACTAGCTGCCTGGCT 61.220 57.895 21.03 1.67 45.29 4.75
514 515 0.904865 ACACACTAGCTGCCTGGCTA 60.905 55.000 21.03 5.44 42.97 3.93
528 529 4.542075 GCTAGGCTTAGGCACCAC 57.458 61.111 8.84 0.00 40.87 4.16
529 530 1.908483 GCTAGGCTTAGGCACCACT 59.092 57.895 8.84 0.00 40.87 4.00
530 531 1.120530 GCTAGGCTTAGGCACCACTA 58.879 55.000 8.84 0.00 40.87 2.74
531 532 1.069358 GCTAGGCTTAGGCACCACTAG 59.931 57.143 8.84 1.73 40.87 2.57
532 533 2.667470 CTAGGCTTAGGCACCACTAGA 58.333 52.381 8.84 0.00 40.87 2.43
533 534 1.952621 AGGCTTAGGCACCACTAGAA 58.047 50.000 8.84 0.00 40.87 2.10
534 535 1.834263 AGGCTTAGGCACCACTAGAAG 59.166 52.381 8.84 0.00 40.87 2.85
535 536 1.657822 GCTTAGGCACCACTAGAAGC 58.342 55.000 0.00 0.00 38.54 3.86
538 539 4.303257 GGCACCACTAGAAGCCAC 57.697 61.111 0.00 0.00 46.26 5.01
539 540 1.374947 GGCACCACTAGAAGCCACA 59.625 57.895 0.00 0.00 46.26 4.17
540 541 0.250727 GGCACCACTAGAAGCCACAA 60.251 55.000 0.00 0.00 46.26 3.33
541 542 1.604604 GCACCACTAGAAGCCACAAA 58.395 50.000 0.00 0.00 0.00 2.83
542 543 2.162681 GCACCACTAGAAGCCACAAAT 58.837 47.619 0.00 0.00 0.00 2.32
543 544 2.095059 GCACCACTAGAAGCCACAAATG 60.095 50.000 0.00 0.00 0.00 2.32
559 560 2.521465 TGGCCCAACCAGCAAGTG 60.521 61.111 0.00 0.00 46.36 3.16
560 561 3.994853 GGCCCAACCAGCAAGTGC 61.995 66.667 0.00 0.00 38.86 4.40
579 580 2.202566 GCGATAAGCTGTAGGTGAACC 58.797 52.381 0.00 0.00 44.04 3.62
580 581 2.822764 CGATAAGCTGTAGGTGAACCC 58.177 52.381 0.00 0.00 36.42 4.11
581 582 2.167693 CGATAAGCTGTAGGTGAACCCA 59.832 50.000 0.00 0.00 36.42 4.51
582 583 3.369052 CGATAAGCTGTAGGTGAACCCAA 60.369 47.826 0.00 0.00 36.42 4.12
583 584 2.568623 AAGCTGTAGGTGAACCCAAG 57.431 50.000 0.00 0.00 36.42 3.61
584 585 1.435256 AGCTGTAGGTGAACCCAAGT 58.565 50.000 0.00 0.00 36.42 3.16
585 586 1.348036 AGCTGTAGGTGAACCCAAGTC 59.652 52.381 0.00 0.00 36.42 3.01
586 587 1.071699 GCTGTAGGTGAACCCAAGTCA 59.928 52.381 0.00 0.00 36.42 3.41
587 588 2.486548 GCTGTAGGTGAACCCAAGTCAA 60.487 50.000 0.00 0.00 36.42 3.18
588 589 3.815809 CTGTAGGTGAACCCAAGTCAAA 58.184 45.455 0.00 0.00 36.42 2.69
589 590 4.204012 CTGTAGGTGAACCCAAGTCAAAA 58.796 43.478 0.00 0.00 36.42 2.44
590 591 4.204012 TGTAGGTGAACCCAAGTCAAAAG 58.796 43.478 0.00 0.00 36.42 2.27
591 592 3.382083 AGGTGAACCCAAGTCAAAAGT 57.618 42.857 0.00 0.00 36.42 2.66
592 593 3.288092 AGGTGAACCCAAGTCAAAAGTC 58.712 45.455 0.00 0.00 36.42 3.01
593 594 3.020984 GGTGAACCCAAGTCAAAAGTCA 58.979 45.455 0.00 0.00 0.00 3.41
594 595 3.445805 GGTGAACCCAAGTCAAAAGTCAA 59.554 43.478 0.00 0.00 0.00 3.18
595 596 4.081917 GGTGAACCCAAGTCAAAAGTCAAA 60.082 41.667 0.00 0.00 0.00 2.69
596 597 5.474825 GTGAACCCAAGTCAAAAGTCAAAA 58.525 37.500 0.00 0.00 0.00 2.44
597 598 5.347635 GTGAACCCAAGTCAAAAGTCAAAAC 59.652 40.000 0.00 0.00 0.00 2.43
598 599 5.245075 TGAACCCAAGTCAAAAGTCAAAACT 59.755 36.000 0.00 0.00 37.32 2.66
599 600 5.324784 ACCCAAGTCAAAAGTCAAAACTC 57.675 39.130 0.00 0.00 33.48 3.01
600 601 4.159693 ACCCAAGTCAAAAGTCAAAACTCC 59.840 41.667 0.00 0.00 33.48 3.85
601 602 4.441495 CCCAAGTCAAAAGTCAAAACTCCC 60.441 45.833 0.00 0.00 33.48 4.30
602 603 4.441495 CCAAGTCAAAAGTCAAAACTCCCC 60.441 45.833 0.00 0.00 33.48 4.81
603 604 4.251103 AGTCAAAAGTCAAAACTCCCCT 57.749 40.909 0.00 0.00 33.48 4.79
604 605 4.207955 AGTCAAAAGTCAAAACTCCCCTC 58.792 43.478 0.00 0.00 33.48 4.30
605 606 3.003378 GTCAAAAGTCAAAACTCCCCTCG 59.997 47.826 0.00 0.00 33.48 4.63
606 607 2.949644 CAAAAGTCAAAACTCCCCTCGT 59.050 45.455 0.00 0.00 33.48 4.18
607 608 4.131596 CAAAAGTCAAAACTCCCCTCGTA 58.868 43.478 0.00 0.00 33.48 3.43
608 609 3.679824 AAGTCAAAACTCCCCTCGTAG 57.320 47.619 0.00 0.00 33.48 3.51
609 610 2.885616 AGTCAAAACTCCCCTCGTAGA 58.114 47.619 0.00 0.00 0.00 2.59
610 611 3.236896 AGTCAAAACTCCCCTCGTAGAA 58.763 45.455 0.00 0.00 34.09 2.10
611 612 3.258622 AGTCAAAACTCCCCTCGTAGAAG 59.741 47.826 0.00 0.00 34.09 2.85
612 613 3.257624 GTCAAAACTCCCCTCGTAGAAGA 59.742 47.826 0.00 0.00 34.09 2.87
613 614 3.257624 TCAAAACTCCCCTCGTAGAAGAC 59.742 47.826 0.00 0.00 34.09 3.01
621 622 3.921521 CGTAGAAGACGCTCCCCT 58.078 61.111 0.00 0.00 46.27 4.79
622 623 1.433879 CGTAGAAGACGCTCCCCTG 59.566 63.158 0.00 0.00 46.27 4.45
623 624 1.142097 GTAGAAGACGCTCCCCTGC 59.858 63.158 0.00 0.00 0.00 4.85
624 625 1.304962 TAGAAGACGCTCCCCTGCA 60.305 57.895 0.00 0.00 0.00 4.41
625 626 1.323271 TAGAAGACGCTCCCCTGCAG 61.323 60.000 6.78 6.78 0.00 4.41
626 627 4.400961 AAGACGCTCCCCTGCAGC 62.401 66.667 8.66 0.00 0.00 5.25
632 633 4.767255 CTCCCCTGCAGCCGTGAC 62.767 72.222 8.66 0.00 0.00 3.67
635 636 4.007644 CCCTGCAGCCGTGACTGA 62.008 66.667 8.66 0.00 40.25 3.41
636 637 2.031012 CCTGCAGCCGTGACTGAA 59.969 61.111 8.66 0.00 40.25 3.02
637 638 1.597854 CCTGCAGCCGTGACTGAAA 60.598 57.895 8.66 0.00 40.25 2.69
638 639 1.571460 CTGCAGCCGTGACTGAAAC 59.429 57.895 0.00 0.00 40.25 2.78
639 640 0.882042 CTGCAGCCGTGACTGAAACT 60.882 55.000 0.00 0.00 40.25 2.66
640 641 0.391228 TGCAGCCGTGACTGAAACTA 59.609 50.000 1.88 0.00 40.25 2.24
641 642 1.001974 TGCAGCCGTGACTGAAACTAT 59.998 47.619 1.88 0.00 40.25 2.12
642 643 1.661112 GCAGCCGTGACTGAAACTATC 59.339 52.381 1.88 0.00 40.25 2.08
643 644 2.675317 GCAGCCGTGACTGAAACTATCT 60.675 50.000 1.88 0.00 40.25 1.98
644 645 2.926200 CAGCCGTGACTGAAACTATCTG 59.074 50.000 0.00 0.00 40.25 2.90
645 646 2.093973 AGCCGTGACTGAAACTATCTGG 60.094 50.000 0.00 0.00 0.00 3.86
646 647 2.271800 CCGTGACTGAAACTATCTGGC 58.728 52.381 0.00 0.00 35.64 4.85
647 648 2.093973 CCGTGACTGAAACTATCTGGCT 60.094 50.000 0.00 0.00 36.06 4.75
648 649 3.589988 CGTGACTGAAACTATCTGGCTT 58.410 45.455 0.00 0.00 36.06 4.35
649 650 3.997021 CGTGACTGAAACTATCTGGCTTT 59.003 43.478 0.00 0.00 36.06 3.51
650 651 4.452455 CGTGACTGAAACTATCTGGCTTTT 59.548 41.667 0.00 0.00 36.06 2.27
651 652 5.389935 CGTGACTGAAACTATCTGGCTTTTC 60.390 44.000 0.00 0.00 36.06 2.29
652 653 5.003804 TGACTGAAACTATCTGGCTTTTCC 58.996 41.667 0.00 0.00 36.06 3.13
653 654 4.336280 ACTGAAACTATCTGGCTTTTCCC 58.664 43.478 0.00 0.00 0.00 3.97
708 709 1.358725 CCTGGTACGTGTGCCAATCG 61.359 60.000 11.02 0.20 44.63 3.34
713 714 1.730064 GTACGTGTGCCAATCGAACAT 59.270 47.619 0.00 0.00 0.00 2.71
850 851 2.606308 CCCGTCGGTACATAATTCTCGG 60.606 54.545 11.06 0.00 36.00 4.63
865 866 2.581409 CGGGTCGGTACATCGTGC 60.581 66.667 0.00 0.00 0.00 5.34
960 961 5.045140 TCGACAGGGGAGGAAAAATAAATCT 60.045 40.000 0.00 0.00 0.00 2.40
1310 1328 0.887933 GGCTCCAAAAGGATCGCAAA 59.112 50.000 0.00 0.00 0.00 3.68
2080 2693 9.202273 TCAAAACTGTTTATGAAATTACATGCC 57.798 29.630 6.16 0.00 0.00 4.40
2081 2694 9.206870 CAAAACTGTTTATGAAATTACATGCCT 57.793 29.630 6.16 0.00 0.00 4.75
2082 2695 8.761575 AAACTGTTTATGAAATTACATGCCTG 57.238 30.769 3.51 0.00 0.00 4.85
2083 2696 6.332630 ACTGTTTATGAAATTACATGCCTGC 58.667 36.000 0.00 0.00 0.00 4.85
2084 2697 6.071447 ACTGTTTATGAAATTACATGCCTGCA 60.071 34.615 0.00 0.00 0.00 4.41
2085 2698 6.876155 TGTTTATGAAATTACATGCCTGCAT 58.124 32.000 0.00 0.00 37.08 3.96
2087 2700 8.473219 TGTTTATGAAATTACATGCCTGCATAA 58.527 29.630 3.98 0.00 34.91 1.90
2888 3538 3.360867 CCTGATGAGGAGAGCCGTATAT 58.639 50.000 0.00 0.00 42.93 0.86
3183 3833 7.899973 ACTGGAGTTTCTTTTCATTGCATAAT 58.100 30.769 0.00 0.00 0.00 1.28
3184 3834 7.816031 ACTGGAGTTTCTTTTCATTGCATAATG 59.184 33.333 0.00 0.00 44.03 1.90
3239 3889 4.807304 CCAAGGATGACATATTTTTGCTGC 59.193 41.667 0.00 0.00 0.00 5.25
3324 3974 2.296792 TGTGTCCTTGTGAATGTGTGG 58.703 47.619 0.00 0.00 0.00 4.17
3384 4034 2.043604 CTGCCAGACACCACTCACCA 62.044 60.000 0.00 0.00 0.00 4.17
3723 4381 5.684184 CCATGCATCTATTTGTTCGACAATG 59.316 40.000 0.00 0.00 38.00 2.82
4654 5359 0.550914 AACCACAAGCAGGGACAAGA 59.449 50.000 0.00 0.00 0.00 3.02
5185 5900 3.994392 GCGTTCATCAGGAAACAGAGTAA 59.006 43.478 0.00 0.00 37.23 2.24
5318 6033 3.930634 ATTTCAAACTGCTTGAGCTCC 57.069 42.857 12.15 0.00 44.84 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.570930 TCTTCGGTTTTTGCTTGGTTTTT 58.429 34.783 0.00 0.00 0.00 1.94
13 14 4.180817 CTCTTCGGTTTTTGCTTGGTTTT 58.819 39.130 0.00 0.00 0.00 2.43
14 15 3.780902 CTCTTCGGTTTTTGCTTGGTTT 58.219 40.909 0.00 0.00 0.00 3.27
15 16 2.481276 GCTCTTCGGTTTTTGCTTGGTT 60.481 45.455 0.00 0.00 0.00 3.67
16 17 1.067060 GCTCTTCGGTTTTTGCTTGGT 59.933 47.619 0.00 0.00 0.00 3.67
17 18 1.602920 GGCTCTTCGGTTTTTGCTTGG 60.603 52.381 0.00 0.00 0.00 3.61
18 19 1.066908 TGGCTCTTCGGTTTTTGCTTG 59.933 47.619 0.00 0.00 0.00 4.01
19 20 1.398692 TGGCTCTTCGGTTTTTGCTT 58.601 45.000 0.00 0.00 0.00 3.91
20 21 1.620822 ATGGCTCTTCGGTTTTTGCT 58.379 45.000 0.00 0.00 0.00 3.91
21 22 2.438868 AATGGCTCTTCGGTTTTTGC 57.561 45.000 0.00 0.00 0.00 3.68
22 23 4.385748 GCTTTAATGGCTCTTCGGTTTTTG 59.614 41.667 0.00 0.00 0.00 2.44
23 24 4.038642 TGCTTTAATGGCTCTTCGGTTTTT 59.961 37.500 3.28 0.00 0.00 1.94
24 25 3.572255 TGCTTTAATGGCTCTTCGGTTTT 59.428 39.130 3.28 0.00 0.00 2.43
25 26 3.153919 TGCTTTAATGGCTCTTCGGTTT 58.846 40.909 3.28 0.00 0.00 3.27
26 27 2.790433 TGCTTTAATGGCTCTTCGGTT 58.210 42.857 3.28 0.00 0.00 4.44
27 28 2.489938 TGCTTTAATGGCTCTTCGGT 57.510 45.000 3.28 0.00 0.00 4.69
28 29 3.848272 TTTGCTTTAATGGCTCTTCGG 57.152 42.857 3.28 0.00 0.00 4.30
50 51 8.707839 CGGCACATGTTTTTGAGTATAATTTTT 58.292 29.630 0.00 0.00 0.00 1.94
51 52 8.085296 TCGGCACATGTTTTTGAGTATAATTTT 58.915 29.630 0.00 0.00 0.00 1.82
52 53 7.598278 TCGGCACATGTTTTTGAGTATAATTT 58.402 30.769 0.00 0.00 0.00 1.82
53 54 7.151999 TCGGCACATGTTTTTGAGTATAATT 57.848 32.000 0.00 0.00 0.00 1.40
54 55 6.751514 TCGGCACATGTTTTTGAGTATAAT 57.248 33.333 0.00 0.00 0.00 1.28
55 56 6.561737 TTCGGCACATGTTTTTGAGTATAA 57.438 33.333 0.00 0.00 0.00 0.98
56 57 6.375377 GTTTCGGCACATGTTTTTGAGTATA 58.625 36.000 0.00 0.00 0.00 1.47
57 58 5.219633 GTTTCGGCACATGTTTTTGAGTAT 58.780 37.500 0.00 0.00 0.00 2.12
58 59 4.602995 GTTTCGGCACATGTTTTTGAGTA 58.397 39.130 0.00 0.00 0.00 2.59
59 60 3.443976 GTTTCGGCACATGTTTTTGAGT 58.556 40.909 0.00 0.00 0.00 3.41
60 61 2.467305 CGTTTCGGCACATGTTTTTGAG 59.533 45.455 0.00 0.00 0.00 3.02
61 62 2.097629 TCGTTTCGGCACATGTTTTTGA 59.902 40.909 0.00 0.00 0.00 2.69
62 63 2.455032 TCGTTTCGGCACATGTTTTTG 58.545 42.857 0.00 0.00 0.00 2.44
63 64 2.853731 TCGTTTCGGCACATGTTTTT 57.146 40.000 0.00 0.00 0.00 1.94
64 65 2.853731 TTCGTTTCGGCACATGTTTT 57.146 40.000 0.00 0.00 0.00 2.43
65 66 2.853731 TTTCGTTTCGGCACATGTTT 57.146 40.000 0.00 0.00 0.00 2.83
66 67 2.456010 GTTTTCGTTTCGGCACATGTT 58.544 42.857 0.00 0.00 0.00 2.71
67 68 1.595976 CGTTTTCGTTTCGGCACATGT 60.596 47.619 0.00 0.00 38.65 3.21
68 69 1.041726 CGTTTTCGTTTCGGCACATG 58.958 50.000 0.00 0.00 38.65 3.21
69 70 0.938713 TCGTTTTCGTTTCGGCACAT 59.061 45.000 0.00 0.00 44.46 3.21
70 71 0.026544 GTCGTTTTCGTTTCGGCACA 59.973 50.000 0.00 0.00 44.46 4.57
71 72 0.026544 TGTCGTTTTCGTTTCGGCAC 59.973 50.000 0.00 0.00 44.46 5.01
72 73 0.938713 ATGTCGTTTTCGTTTCGGCA 59.061 45.000 0.00 0.00 42.94 5.69
73 74 1.314581 CATGTCGTTTTCGTTTCGGC 58.685 50.000 0.00 0.00 44.46 5.54
74 75 1.070175 AGCATGTCGTTTTCGTTTCGG 60.070 47.619 0.00 0.00 44.46 4.30
75 76 2.222624 GAGCATGTCGTTTTCGTTTCG 58.777 47.619 0.00 0.00 44.46 3.46
76 77 2.222624 CGAGCATGTCGTTTTCGTTTC 58.777 47.619 8.84 0.00 44.20 2.78
77 78 2.294479 CGAGCATGTCGTTTTCGTTT 57.706 45.000 8.84 0.00 44.20 3.60
87 88 1.915614 CTTGCCACACCGAGCATGTC 61.916 60.000 0.00 0.00 39.11 3.06
88 89 1.968017 CTTGCCACACCGAGCATGT 60.968 57.895 0.00 0.00 39.11 3.21
89 90 2.872557 CTTGCCACACCGAGCATG 59.127 61.111 0.00 0.00 39.11 4.06
90 91 3.058160 GCTTGCCACACCGAGCAT 61.058 61.111 0.00 0.00 41.07 3.79
93 94 3.716006 CACGCTTGCCACACCGAG 61.716 66.667 0.00 0.00 0.00 4.63
102 103 2.097160 CAGATGTCGCACGCTTGC 59.903 61.111 4.85 4.85 46.21 4.01
103 104 2.780643 CCAGATGTCGCACGCTTG 59.219 61.111 0.00 0.00 0.00 4.01
104 105 3.121030 GCCAGATGTCGCACGCTT 61.121 61.111 0.00 0.00 0.00 4.68
105 106 4.377708 TGCCAGATGTCGCACGCT 62.378 61.111 0.00 0.00 0.00 5.07
106 107 3.857854 CTGCCAGATGTCGCACGC 61.858 66.667 0.00 0.00 0.00 5.34
107 108 2.125952 TCTGCCAGATGTCGCACG 60.126 61.111 0.00 0.00 0.00 5.34
108 109 0.671781 AACTCTGCCAGATGTCGCAC 60.672 55.000 0.00 0.00 0.00 5.34
109 110 0.671472 CAACTCTGCCAGATGTCGCA 60.671 55.000 0.00 0.00 0.00 5.10
110 111 1.364626 CCAACTCTGCCAGATGTCGC 61.365 60.000 0.00 0.00 0.00 5.19
111 112 0.742281 CCCAACTCTGCCAGATGTCG 60.742 60.000 0.00 0.00 0.00 4.35
112 113 0.393537 CCCCAACTCTGCCAGATGTC 60.394 60.000 0.00 0.00 0.00 3.06
113 114 1.687612 CCCCAACTCTGCCAGATGT 59.312 57.895 0.00 0.00 0.00 3.06
114 115 1.751927 GCCCCAACTCTGCCAGATG 60.752 63.158 0.00 0.00 0.00 2.90
115 116 2.679716 GCCCCAACTCTGCCAGAT 59.320 61.111 0.00 0.00 0.00 2.90
116 117 4.020617 CGCCCCAACTCTGCCAGA 62.021 66.667 0.00 0.00 0.00 3.86
139 140 4.758251 TGCTCCCACGACGCCATG 62.758 66.667 0.00 0.00 0.00 3.66
140 141 4.760047 GTGCTCCCACGACGCCAT 62.760 66.667 0.00 0.00 31.34 4.40
145 146 4.357947 TGCGAGTGCTCCCACGAC 62.358 66.667 0.00 0.00 46.62 4.34
146 147 4.357947 GTGCGAGTGCTCCCACGA 62.358 66.667 1.85 0.00 46.62 4.35
148 149 4.664677 ACGTGCGAGTGCTCCCAC 62.665 66.667 6.87 6.87 43.34 4.61
149 150 4.357947 GACGTGCGAGTGCTCCCA 62.358 66.667 0.00 0.00 43.34 4.37
150 151 4.357947 TGACGTGCGAGTGCTCCC 62.358 66.667 0.00 0.00 43.34 4.30
151 152 2.807045 CTGACGTGCGAGTGCTCC 60.807 66.667 0.00 0.00 43.34 4.70
152 153 2.807045 CCTGACGTGCGAGTGCTC 60.807 66.667 0.00 0.00 43.34 4.26
153 154 4.363990 CCCTGACGTGCGAGTGCT 62.364 66.667 0.00 0.00 43.34 4.40
155 156 3.633094 CTCCCCTGACGTGCGAGTG 62.633 68.421 0.00 0.00 0.00 3.51
156 157 3.374402 CTCCCCTGACGTGCGAGT 61.374 66.667 0.00 0.00 0.00 4.18
157 158 3.374402 ACTCCCCTGACGTGCGAG 61.374 66.667 0.00 0.00 0.00 5.03
158 159 3.680786 CACTCCCCTGACGTGCGA 61.681 66.667 0.00 0.00 0.00 5.10
159 160 3.633094 CTCACTCCCCTGACGTGCG 62.633 68.421 0.00 0.00 0.00 5.34
160 161 1.248785 TACTCACTCCCCTGACGTGC 61.249 60.000 0.00 0.00 0.00 5.34
161 162 1.254026 TTACTCACTCCCCTGACGTG 58.746 55.000 0.00 0.00 0.00 4.49
162 163 1.617357 GTTTACTCACTCCCCTGACGT 59.383 52.381 0.00 0.00 0.00 4.34
163 164 1.067071 GGTTTACTCACTCCCCTGACG 60.067 57.143 0.00 0.00 0.00 4.35
164 165 1.278413 GGGTTTACTCACTCCCCTGAC 59.722 57.143 0.00 0.00 34.32 3.51
165 166 1.151413 AGGGTTTACTCACTCCCCTGA 59.849 52.381 0.00 0.00 44.09 3.86
166 167 1.657804 AGGGTTTACTCACTCCCCTG 58.342 55.000 0.00 0.00 44.09 4.45
168 169 4.645863 TTTAAGGGTTTACTCACTCCCC 57.354 45.455 0.00 0.00 40.70 4.81
169 170 6.955364 ACTATTTAAGGGTTTACTCACTCCC 58.045 40.000 0.00 0.00 40.16 4.30
170 171 7.849160 AGACTATTTAAGGGTTTACTCACTCC 58.151 38.462 0.00 0.00 0.00 3.85
171 172 9.722184 AAAGACTATTTAAGGGTTTACTCACTC 57.278 33.333 0.00 0.00 0.00 3.51
197 198 9.603921 CTATAGGACGGTTAATTCACCTAAAAA 57.396 33.333 7.21 0.00 34.42 1.94
198 199 8.761689 ACTATAGGACGGTTAATTCACCTAAAA 58.238 33.333 7.21 0.00 34.42 1.52
199 200 8.310122 ACTATAGGACGGTTAATTCACCTAAA 57.690 34.615 7.21 0.00 34.42 1.85
200 201 7.014615 GGACTATAGGACGGTTAATTCACCTAA 59.985 40.741 7.21 0.00 34.42 2.69
201 202 6.491403 GGACTATAGGACGGTTAATTCACCTA 59.509 42.308 7.21 0.00 34.22 3.08
202 203 5.303845 GGACTATAGGACGGTTAATTCACCT 59.696 44.000 7.21 0.00 34.22 4.00
203 204 5.303845 AGGACTATAGGACGGTTAATTCACC 59.696 44.000 4.43 0.00 0.00 4.02
204 205 6.402456 AGGACTATAGGACGGTTAATTCAC 57.598 41.667 4.43 0.00 0.00 3.18
205 206 7.427989 AAAGGACTATAGGACGGTTAATTCA 57.572 36.000 4.43 0.00 0.00 2.57
206 207 8.610035 CAAAAAGGACTATAGGACGGTTAATTC 58.390 37.037 4.43 0.00 0.00 2.17
207 208 8.105197 ACAAAAAGGACTATAGGACGGTTAATT 58.895 33.333 4.43 0.00 0.00 1.40
208 209 7.627311 ACAAAAAGGACTATAGGACGGTTAAT 58.373 34.615 4.43 0.00 0.00 1.40
209 210 7.008021 ACAAAAAGGACTATAGGACGGTTAA 57.992 36.000 4.43 0.00 0.00 2.01
210 211 6.610075 ACAAAAAGGACTATAGGACGGTTA 57.390 37.500 4.43 0.00 0.00 2.85
211 212 5.494390 ACAAAAAGGACTATAGGACGGTT 57.506 39.130 4.43 0.00 0.00 4.44
212 213 5.221783 ACAACAAAAAGGACTATAGGACGGT 60.222 40.000 4.43 0.00 0.00 4.83
213 214 5.243207 ACAACAAAAAGGACTATAGGACGG 58.757 41.667 4.43 0.00 0.00 4.79
214 215 6.425721 TCAACAACAAAAAGGACTATAGGACG 59.574 38.462 4.43 0.00 0.00 4.79
215 216 7.573283 GCTCAACAACAAAAAGGACTATAGGAC 60.573 40.741 4.43 0.00 0.00 3.85
216 217 6.430000 GCTCAACAACAAAAAGGACTATAGGA 59.570 38.462 4.43 0.00 0.00 2.94
217 218 6.206634 TGCTCAACAACAAAAAGGACTATAGG 59.793 38.462 4.43 0.00 0.00 2.57
218 219 7.202016 TGCTCAACAACAAAAAGGACTATAG 57.798 36.000 0.00 0.00 0.00 1.31
219 220 7.575414 TTGCTCAACAACAAAAAGGACTATA 57.425 32.000 0.00 0.00 31.73 1.31
220 221 6.463995 TTGCTCAACAACAAAAAGGACTAT 57.536 33.333 0.00 0.00 31.73 2.12
221 222 5.906113 TTGCTCAACAACAAAAAGGACTA 57.094 34.783 0.00 0.00 31.73 2.59
222 223 4.799564 TTGCTCAACAACAAAAAGGACT 57.200 36.364 0.00 0.00 31.73 3.85
223 224 5.390461 GGTTTTGCTCAACAACAAAAAGGAC 60.390 40.000 2.76 0.00 44.72 3.85
224 225 4.693095 GGTTTTGCTCAACAACAAAAAGGA 59.307 37.500 2.76 0.00 44.72 3.36
225 226 4.435386 CGGTTTTGCTCAACAACAAAAAGG 60.435 41.667 2.76 0.00 44.72 3.11
226 227 4.151512 ACGGTTTTGCTCAACAACAAAAAG 59.848 37.500 2.76 3.77 44.72 2.27
227 228 4.058817 ACGGTTTTGCTCAACAACAAAAA 58.941 34.783 2.76 0.00 44.72 1.94
228 229 3.654414 ACGGTTTTGCTCAACAACAAAA 58.346 36.364 0.00 0.00 41.97 2.44
229 230 3.305398 ACGGTTTTGCTCAACAACAAA 57.695 38.095 0.00 0.00 38.23 2.83
230 231 3.305398 AACGGTTTTGCTCAACAACAA 57.695 38.095 0.00 0.00 38.23 2.83
231 232 4.436242 TTAACGGTTTTGCTCAACAACA 57.564 36.364 0.00 0.00 38.23 3.33
232 233 5.959652 ATTTAACGGTTTTGCTCAACAAC 57.040 34.783 0.00 0.00 38.23 3.32
233 234 6.797454 ACTATTTAACGGTTTTGCTCAACAA 58.203 32.000 0.00 0.00 36.13 2.83
234 235 6.038382 TGACTATTTAACGGTTTTGCTCAACA 59.962 34.615 0.00 0.00 0.00 3.33
235 236 6.432107 TGACTATTTAACGGTTTTGCTCAAC 58.568 36.000 0.00 0.00 0.00 3.18
236 237 6.621316 TGACTATTTAACGGTTTTGCTCAA 57.379 33.333 0.00 0.00 0.00 3.02
237 238 6.811253 ATGACTATTTAACGGTTTTGCTCA 57.189 33.333 0.00 0.00 0.00 4.26
238 239 7.481798 CAGAATGACTATTTAACGGTTTTGCTC 59.518 37.037 0.00 0.00 39.69 4.26
239 240 7.305474 CAGAATGACTATTTAACGGTTTTGCT 58.695 34.615 0.00 0.00 39.69 3.91
240 241 6.033513 GCAGAATGACTATTTAACGGTTTTGC 59.966 38.462 0.00 0.00 39.69 3.68
241 242 6.526674 GGCAGAATGACTATTTAACGGTTTTG 59.473 38.462 0.00 0.00 44.72 2.44
242 243 6.617879 GGCAGAATGACTATTTAACGGTTTT 58.382 36.000 0.00 0.00 44.72 2.43
243 244 6.190954 GGCAGAATGACTATTTAACGGTTT 57.809 37.500 0.00 0.00 44.72 3.27
244 245 5.813080 GGCAGAATGACTATTTAACGGTT 57.187 39.130 0.00 0.00 44.72 4.44
257 258 2.161410 GTGCGTACAATTGGCAGAATGA 59.839 45.455 10.83 0.00 39.69 2.57
258 259 2.518949 GTGCGTACAATTGGCAGAATG 58.481 47.619 10.83 0.00 37.36 2.67
259 260 1.130373 CGTGCGTACAATTGGCAGAAT 59.870 47.619 10.83 0.00 37.36 2.40
260 261 0.515127 CGTGCGTACAATTGGCAGAA 59.485 50.000 10.83 0.00 37.36 3.02
261 262 0.601576 ACGTGCGTACAATTGGCAGA 60.602 50.000 10.83 0.00 37.36 4.26
262 263 0.237235 AACGTGCGTACAATTGGCAG 59.763 50.000 10.83 6.71 37.36 4.85
263 264 0.040870 CAACGTGCGTACAATTGGCA 60.041 50.000 10.83 7.08 0.00 4.92
264 265 0.236187 TCAACGTGCGTACAATTGGC 59.764 50.000 10.83 4.28 0.00 4.52
265 266 2.303537 GTTCAACGTGCGTACAATTGG 58.696 47.619 10.83 0.00 0.00 3.16
266 267 1.959885 CGTTCAACGTGCGTACAATTG 59.040 47.619 0.39 3.24 36.74 2.32
267 268 1.658094 GCGTTCAACGTGCGTACAATT 60.658 47.619 12.40 0.00 44.73 2.32
268 269 0.111001 GCGTTCAACGTGCGTACAAT 60.111 50.000 12.40 0.00 44.73 2.71
269 270 1.273300 GCGTTCAACGTGCGTACAA 59.727 52.632 12.40 0.00 44.73 2.41
270 271 1.877165 TGCGTTCAACGTGCGTACA 60.877 52.632 12.40 0.00 44.73 2.90
271 272 1.435966 GTGCGTTCAACGTGCGTAC 60.436 57.895 12.40 0.00 44.73 3.67
272 273 1.419107 TTGTGCGTTCAACGTGCGTA 61.419 50.000 12.40 0.00 44.73 4.42
273 274 2.241885 TTTGTGCGTTCAACGTGCGT 62.242 50.000 12.40 0.00 44.73 5.24
274 275 1.581402 TTTGTGCGTTCAACGTGCG 60.581 52.632 12.40 0.00 44.73 5.34
275 276 0.794981 TGTTTGTGCGTTCAACGTGC 60.795 50.000 12.40 5.40 44.73 5.34
276 277 1.607713 TTGTTTGTGCGTTCAACGTG 58.392 45.000 12.40 0.00 44.73 4.49
277 278 1.980156 GTTTGTTTGTGCGTTCAACGT 59.020 42.857 12.40 0.00 44.73 3.99
278 279 1.979469 TGTTTGTTTGTGCGTTCAACG 59.021 42.857 5.28 5.28 45.88 4.10
279 280 3.780635 GCATGTTTGTTTGTGCGTTCAAC 60.781 43.478 0.00 0.00 0.00 3.18
280 281 2.346847 GCATGTTTGTTTGTGCGTTCAA 59.653 40.909 0.00 0.00 0.00 2.69
281 282 1.923204 GCATGTTTGTTTGTGCGTTCA 59.077 42.857 0.00 0.00 0.00 3.18
282 283 2.626462 GCATGTTTGTTTGTGCGTTC 57.374 45.000 0.00 0.00 0.00 3.95
286 287 1.136557 GCATCGCATGTTTGTTTGTGC 60.137 47.619 0.00 0.00 0.00 4.57
287 288 2.125685 TGCATCGCATGTTTGTTTGTG 58.874 42.857 0.00 0.00 31.71 3.33
288 289 2.505628 TGCATCGCATGTTTGTTTGT 57.494 40.000 0.00 0.00 31.71 2.83
299 300 0.381445 CGAATCCCAAATGCATCGCA 59.619 50.000 0.00 0.00 44.86 5.10
300 301 0.318107 CCGAATCCCAAATGCATCGC 60.318 55.000 0.00 0.00 0.00 4.58
301 302 0.318107 GCCGAATCCCAAATGCATCG 60.318 55.000 0.00 0.00 0.00 3.84
302 303 0.032540 GGCCGAATCCCAAATGCATC 59.967 55.000 0.00 0.00 0.00 3.91
303 304 1.402107 GGGCCGAATCCCAAATGCAT 61.402 55.000 0.00 0.00 45.82 3.96
304 305 2.057408 GGGCCGAATCCCAAATGCA 61.057 57.895 0.00 0.00 45.82 3.96
305 306 2.814604 GGGCCGAATCCCAAATGC 59.185 61.111 0.00 0.00 45.82 3.56
313 314 4.256090 GTGCGCATGGGCCGAATC 62.256 66.667 29.42 12.38 36.38 2.52
320 321 4.758251 TCTCGTGGTGCGCATGGG 62.758 66.667 15.91 5.19 41.07 4.00
321 322 3.190849 CTCTCGTGGTGCGCATGG 61.191 66.667 15.91 3.20 41.07 3.66
322 323 3.857854 GCTCTCGTGGTGCGCATG 61.858 66.667 15.91 4.26 41.07 4.06
327 328 2.202544 CTCTCGCTCTCGTGGTGC 60.203 66.667 0.00 0.00 36.96 5.01
328 329 1.135731 GTCTCTCGCTCTCGTGGTG 59.864 63.158 0.00 0.00 36.96 4.17
329 330 2.392181 CGTCTCTCGCTCTCGTGGT 61.392 63.158 0.00 0.00 36.96 4.16
330 331 2.101233 TCGTCTCTCGCTCTCGTGG 61.101 63.158 0.00 0.00 39.67 4.94
331 332 1.059681 GTCGTCTCTCGCTCTCGTG 59.940 63.158 0.00 0.00 39.67 4.35
332 333 0.949588 TTGTCGTCTCTCGCTCTCGT 60.950 55.000 0.00 0.00 39.67 4.18
333 334 0.166161 TTTGTCGTCTCTCGCTCTCG 59.834 55.000 0.00 0.00 39.67 4.04
334 335 2.095668 TCTTTTGTCGTCTCTCGCTCTC 60.096 50.000 0.00 0.00 39.67 3.20
335 336 1.880675 TCTTTTGTCGTCTCTCGCTCT 59.119 47.619 0.00 0.00 39.67 4.09
336 337 2.333389 TCTTTTGTCGTCTCTCGCTC 57.667 50.000 0.00 0.00 39.67 5.03
337 338 2.034812 ACTTCTTTTGTCGTCTCTCGCT 59.965 45.455 0.00 0.00 39.67 4.93
338 339 2.395654 ACTTCTTTTGTCGTCTCTCGC 58.604 47.619 0.00 0.00 39.67 5.03
339 340 3.422546 GTGACTTCTTTTGTCGTCTCTCG 59.577 47.826 0.00 0.00 37.26 4.04
340 341 4.360563 TGTGACTTCTTTTGTCGTCTCTC 58.639 43.478 0.00 0.00 37.26 3.20
341 342 4.363999 CTGTGACTTCTTTTGTCGTCTCT 58.636 43.478 0.00 0.00 37.26 3.10
342 343 3.491267 CCTGTGACTTCTTTTGTCGTCTC 59.509 47.826 0.00 0.00 37.26 3.36
343 344 3.458189 CCTGTGACTTCTTTTGTCGTCT 58.542 45.455 0.00 0.00 37.26 4.18
344 345 2.544267 CCCTGTGACTTCTTTTGTCGTC 59.456 50.000 0.00 0.00 37.26 4.20
345 346 2.561569 CCCTGTGACTTCTTTTGTCGT 58.438 47.619 0.00 0.00 37.26 4.34
346 347 1.264288 GCCCTGTGACTTCTTTTGTCG 59.736 52.381 0.00 0.00 37.26 4.35
347 348 1.609072 GGCCCTGTGACTTCTTTTGTC 59.391 52.381 0.00 0.00 35.21 3.18
348 349 1.215423 AGGCCCTGTGACTTCTTTTGT 59.785 47.619 0.00 0.00 0.00 2.83
349 350 1.610522 CAGGCCCTGTGACTTCTTTTG 59.389 52.381 1.39 0.00 0.00 2.44
350 351 1.479389 CCAGGCCCTGTGACTTCTTTT 60.479 52.381 10.47 0.00 0.00 2.27
351 352 0.111253 CCAGGCCCTGTGACTTCTTT 59.889 55.000 10.47 0.00 0.00 2.52
352 353 1.062488 ACCAGGCCCTGTGACTTCTT 61.062 55.000 10.47 0.00 0.00 2.52
353 354 1.062488 AACCAGGCCCTGTGACTTCT 61.062 55.000 10.47 0.00 0.00 2.85
354 355 0.606673 GAACCAGGCCCTGTGACTTC 60.607 60.000 10.47 1.33 0.00 3.01
355 356 1.456287 GAACCAGGCCCTGTGACTT 59.544 57.895 10.47 0.00 0.00 3.01
356 357 2.883828 CGAACCAGGCCCTGTGACT 61.884 63.158 10.47 0.00 0.00 3.41
357 358 2.358737 CGAACCAGGCCCTGTGAC 60.359 66.667 10.47 0.00 0.00 3.67
358 359 4.329545 GCGAACCAGGCCCTGTGA 62.330 66.667 10.47 0.00 0.00 3.58
359 360 4.335647 AGCGAACCAGGCCCTGTG 62.336 66.667 10.47 3.79 0.00 3.66
360 361 4.021925 GAGCGAACCAGGCCCTGT 62.022 66.667 10.47 0.00 0.00 4.00
375 376 1.071605 GAGGCCTTATTATGCGCGAG 58.928 55.000 12.10 0.00 0.00 5.03
376 377 0.679505 AGAGGCCTTATTATGCGCGA 59.320 50.000 12.10 0.00 0.00 5.87
377 378 1.461127 GAAGAGGCCTTATTATGCGCG 59.539 52.381 6.77 0.00 31.62 6.86
378 379 1.807142 GGAAGAGGCCTTATTATGCGC 59.193 52.381 6.77 0.00 31.62 6.09
379 380 2.069273 CGGAAGAGGCCTTATTATGCG 58.931 52.381 6.77 5.18 31.62 4.73
380 381 2.427506 CCGGAAGAGGCCTTATTATGC 58.572 52.381 6.77 0.00 31.62 3.14
410 411 3.171388 ATCCGGGATGGTCCTGCC 61.171 66.667 9.17 0.00 41.66 4.85
411 412 2.427753 GATCCGGGATGGTCCTGC 59.572 66.667 15.70 0.00 41.66 4.85
412 413 2.088674 GACGATCCGGGATGGTCCTG 62.089 65.000 30.88 11.12 40.31 3.86
413 414 1.833049 GACGATCCGGGATGGTCCT 60.833 63.158 30.88 10.01 40.31 3.85
414 415 1.807495 GAGACGATCCGGGATGGTCC 61.807 65.000 34.62 25.85 44.82 4.46
415 416 1.660917 GAGACGATCCGGGATGGTC 59.339 63.158 32.71 32.71 44.33 4.02
416 417 2.194212 CGAGACGATCCGGGATGGT 61.194 63.158 22.60 22.60 39.52 3.55
417 418 2.194212 ACGAGACGATCCGGGATGG 61.194 63.158 15.70 16.12 40.09 3.51
418 419 1.008424 CACGAGACGATCCGGGATG 60.008 63.158 15.70 9.38 0.00 3.51
419 420 1.153025 TCACGAGACGATCCGGGAT 60.153 57.895 9.85 9.85 32.78 3.85
420 421 2.110967 GTCACGAGACGATCCGGGA 61.111 63.158 0.00 0.00 35.67 5.14
421 422 2.408022 GTCACGAGACGATCCGGG 59.592 66.667 0.00 0.00 34.60 5.73
432 433 1.607148 TCTCTCTTTTGCTCGTCACGA 59.393 47.619 0.00 0.00 0.00 4.35
433 434 1.982223 CTCTCTCTTTTGCTCGTCACG 59.018 52.381 0.00 0.00 0.00 4.35
434 435 3.290308 TCTCTCTCTTTTGCTCGTCAC 57.710 47.619 0.00 0.00 0.00 3.67
435 436 4.527509 AATCTCTCTCTTTTGCTCGTCA 57.472 40.909 0.00 0.00 0.00 4.35
436 437 5.202046 CAAATCTCTCTCTTTTGCTCGTC 57.798 43.478 0.00 0.00 0.00 4.20
471 472 4.936248 CTCTCTCTCTCGCGCGCG 62.936 72.222 44.84 44.84 41.35 6.86
472 473 4.605967 CCTCTCTCTCTCGCGCGC 62.606 72.222 27.95 23.91 0.00 6.86
473 474 3.947841 CCCTCTCTCTCTCGCGCG 61.948 72.222 26.76 26.76 0.00 6.86
474 475 3.591835 CCCCTCTCTCTCTCGCGC 61.592 72.222 0.00 0.00 0.00 6.86
475 476 2.124487 ACCCCTCTCTCTCTCGCG 60.124 66.667 0.00 0.00 0.00 5.87
476 477 2.781158 GCACCCCTCTCTCTCTCGC 61.781 68.421 0.00 0.00 0.00 5.03
477 478 1.379176 TGCACCCCTCTCTCTCTCG 60.379 63.158 0.00 0.00 0.00 4.04
478 479 0.613292 TGTGCACCCCTCTCTCTCTC 60.613 60.000 15.69 0.00 0.00 3.20
479 480 0.902516 GTGTGCACCCCTCTCTCTCT 60.903 60.000 15.69 0.00 0.00 3.10
480 481 1.188219 TGTGTGCACCCCTCTCTCTC 61.188 60.000 15.69 0.00 0.00 3.20
481 482 1.152247 TGTGTGCACCCCTCTCTCT 60.152 57.895 15.69 0.00 0.00 3.10
482 483 1.004440 GTGTGTGCACCCCTCTCTC 60.004 63.158 15.69 0.00 39.61 3.20
483 484 0.178932 TAGTGTGTGCACCCCTCTCT 60.179 55.000 15.69 10.49 46.35 3.10
484 485 0.247736 CTAGTGTGTGCACCCCTCTC 59.752 60.000 15.69 3.70 46.35 3.20
485 486 1.831652 GCTAGTGTGTGCACCCCTCT 61.832 60.000 15.69 13.03 46.35 3.69
486 487 1.376037 GCTAGTGTGTGCACCCCTC 60.376 63.158 15.69 6.00 46.35 4.30
487 488 1.843376 AGCTAGTGTGTGCACCCCT 60.843 57.895 15.69 9.69 46.35 4.79
488 489 1.672356 CAGCTAGTGTGTGCACCCC 60.672 63.158 15.69 5.46 46.35 4.95
489 490 2.328099 GCAGCTAGTGTGTGCACCC 61.328 63.158 15.69 2.52 46.35 4.61
490 491 2.328099 GGCAGCTAGTGTGTGCACC 61.328 63.158 15.69 6.37 46.35 5.01
491 492 1.302033 AGGCAGCTAGTGTGTGCAC 60.302 57.895 10.75 10.75 45.57 4.57
492 493 1.301953 CAGGCAGCTAGTGTGTGCA 60.302 57.895 9.66 0.00 39.05 4.57
493 494 2.037136 CCAGGCAGCTAGTGTGTGC 61.037 63.158 0.00 0.00 36.42 4.57
494 495 2.037136 GCCAGGCAGCTAGTGTGTG 61.037 63.158 6.55 0.00 0.00 3.82
495 496 0.904865 TAGCCAGGCAGCTAGTGTGT 60.905 55.000 15.80 0.00 42.70 3.72
496 497 1.900351 TAGCCAGGCAGCTAGTGTG 59.100 57.895 15.80 0.00 42.70 3.82
497 498 4.461119 TAGCCAGGCAGCTAGTGT 57.539 55.556 15.80 0.00 42.70 3.55
507 508 1.147153 GTGCCTAAGCCTAGCCAGG 59.853 63.158 0.00 0.00 45.77 4.45
508 509 1.147153 GGTGCCTAAGCCTAGCCAG 59.853 63.158 0.00 0.00 38.69 4.85
509 510 1.615124 TGGTGCCTAAGCCTAGCCA 60.615 57.895 0.00 0.00 38.69 4.75
510 511 1.153147 GTGGTGCCTAAGCCTAGCC 60.153 63.158 0.00 0.00 38.69 3.93
511 512 1.069358 CTAGTGGTGCCTAAGCCTAGC 59.931 57.143 0.00 0.00 38.69 3.42
512 513 2.667470 TCTAGTGGTGCCTAAGCCTAG 58.333 52.381 0.00 0.00 38.69 3.02
513 514 2.840640 TCTAGTGGTGCCTAAGCCTA 57.159 50.000 0.00 0.00 38.69 3.93
514 515 1.834263 CTTCTAGTGGTGCCTAAGCCT 59.166 52.381 0.00 0.00 38.69 4.58
515 516 1.744114 GCTTCTAGTGGTGCCTAAGCC 60.744 57.143 0.00 0.00 38.69 4.35
516 517 1.657822 GCTTCTAGTGGTGCCTAAGC 58.342 55.000 0.00 0.00 40.48 3.09
517 518 1.555075 TGGCTTCTAGTGGTGCCTAAG 59.445 52.381 15.00 0.96 45.11 2.18
518 519 1.278127 GTGGCTTCTAGTGGTGCCTAA 59.722 52.381 15.00 0.00 45.11 2.69
519 520 0.902531 GTGGCTTCTAGTGGTGCCTA 59.097 55.000 15.00 4.19 45.11 3.93
520 521 1.127567 TGTGGCTTCTAGTGGTGCCT 61.128 55.000 15.00 0.00 45.11 4.75
521 522 0.250727 TTGTGGCTTCTAGTGGTGCC 60.251 55.000 9.77 9.77 45.10 5.01
522 523 1.604604 TTTGTGGCTTCTAGTGGTGC 58.395 50.000 0.00 0.00 0.00 5.01
523 524 2.489329 CCATTTGTGGCTTCTAGTGGTG 59.511 50.000 0.00 0.00 0.00 4.17
524 525 2.795329 CCATTTGTGGCTTCTAGTGGT 58.205 47.619 0.00 0.00 0.00 4.16
535 536 3.882825 TGGTTGGGCCATTTGTGG 58.117 55.556 7.26 0.00 43.61 4.17
542 543 2.521465 CACTTGCTGGTTGGGCCA 60.521 61.111 0.00 0.00 46.95 5.36
543 544 3.994853 GCACTTGCTGGTTGGGCC 61.995 66.667 0.00 0.00 38.21 5.80
544 545 4.347453 CGCACTTGCTGGTTGGGC 62.347 66.667 0.00 0.00 39.32 5.36
545 546 0.676466 TATCGCACTTGCTGGTTGGG 60.676 55.000 0.00 0.00 39.32 4.12
546 547 1.131126 CTTATCGCACTTGCTGGTTGG 59.869 52.381 0.00 0.00 39.32 3.77
547 548 1.466360 GCTTATCGCACTTGCTGGTTG 60.466 52.381 0.00 0.00 39.32 3.77
548 549 0.804989 GCTTATCGCACTTGCTGGTT 59.195 50.000 0.00 0.00 39.32 3.67
549 550 0.036010 AGCTTATCGCACTTGCTGGT 60.036 50.000 0.00 0.00 42.61 4.00
550 551 0.376152 CAGCTTATCGCACTTGCTGG 59.624 55.000 0.00 0.00 44.95 4.85
551 552 3.891786 CAGCTTATCGCACTTGCTG 57.108 52.632 0.00 0.00 43.71 4.41
552 553 2.544685 CTACAGCTTATCGCACTTGCT 58.455 47.619 0.00 0.00 42.61 3.91
553 554 1.594862 CCTACAGCTTATCGCACTTGC 59.405 52.381 0.00 0.00 42.61 4.01
554 555 2.604914 CACCTACAGCTTATCGCACTTG 59.395 50.000 0.00 0.00 42.61 3.16
555 556 2.496070 TCACCTACAGCTTATCGCACTT 59.504 45.455 0.00 0.00 42.61 3.16
556 557 2.100197 TCACCTACAGCTTATCGCACT 58.900 47.619 0.00 0.00 42.61 4.40
557 558 2.579207 TCACCTACAGCTTATCGCAC 57.421 50.000 0.00 0.00 42.61 5.34
558 559 2.418197 GGTTCACCTACAGCTTATCGCA 60.418 50.000 0.00 0.00 42.61 5.10
559 560 2.202566 GGTTCACCTACAGCTTATCGC 58.797 52.381 0.00 0.00 39.57 4.58
560 561 2.167693 TGGGTTCACCTACAGCTTATCG 59.832 50.000 0.00 0.00 41.11 2.92
561 562 3.906720 TGGGTTCACCTACAGCTTATC 57.093 47.619 0.00 0.00 41.11 1.75
562 563 3.587506 ACTTGGGTTCACCTACAGCTTAT 59.412 43.478 0.00 0.00 41.11 1.73
563 564 2.976882 ACTTGGGTTCACCTACAGCTTA 59.023 45.455 0.00 0.00 41.11 3.09
564 565 1.774856 ACTTGGGTTCACCTACAGCTT 59.225 47.619 0.00 0.00 41.11 3.74
565 566 1.348036 GACTTGGGTTCACCTACAGCT 59.652 52.381 0.00 0.00 41.11 4.24
566 567 1.071699 TGACTTGGGTTCACCTACAGC 59.928 52.381 0.00 0.00 41.11 4.40
567 568 3.485463 TTGACTTGGGTTCACCTACAG 57.515 47.619 0.00 0.00 41.11 2.74
568 569 3.935818 TTTGACTTGGGTTCACCTACA 57.064 42.857 0.00 0.00 41.11 2.74
569 570 4.204799 ACTTTTGACTTGGGTTCACCTAC 58.795 43.478 0.00 0.00 41.11 3.18
570 571 4.080243 TGACTTTTGACTTGGGTTCACCTA 60.080 41.667 0.00 0.00 41.11 3.08
571 572 3.288092 GACTTTTGACTTGGGTTCACCT 58.712 45.455 0.00 0.00 41.11 4.00
572 573 3.020984 TGACTTTTGACTTGGGTTCACC 58.979 45.455 0.00 0.00 40.81 4.02
573 574 4.712122 TTGACTTTTGACTTGGGTTCAC 57.288 40.909 0.00 0.00 0.00 3.18
574 575 5.245075 AGTTTTGACTTTTGACTTGGGTTCA 59.755 36.000 0.00 0.00 0.00 3.18
575 576 5.720202 AGTTTTGACTTTTGACTTGGGTTC 58.280 37.500 0.00 0.00 0.00 3.62
576 577 5.337250 GGAGTTTTGACTTTTGACTTGGGTT 60.337 40.000 0.00 0.00 0.00 4.11
577 578 4.159693 GGAGTTTTGACTTTTGACTTGGGT 59.840 41.667 0.00 0.00 0.00 4.51
578 579 4.441495 GGGAGTTTTGACTTTTGACTTGGG 60.441 45.833 0.00 0.00 0.00 4.12
579 580 4.441495 GGGGAGTTTTGACTTTTGACTTGG 60.441 45.833 0.00 0.00 0.00 3.61
580 581 4.402474 AGGGGAGTTTTGACTTTTGACTTG 59.598 41.667 0.00 0.00 0.00 3.16
581 582 4.610333 AGGGGAGTTTTGACTTTTGACTT 58.390 39.130 0.00 0.00 0.00 3.01
582 583 4.207955 GAGGGGAGTTTTGACTTTTGACT 58.792 43.478 0.00 0.00 0.00 3.41
583 584 3.003378 CGAGGGGAGTTTTGACTTTTGAC 59.997 47.826 0.00 0.00 0.00 3.18
584 585 3.211045 CGAGGGGAGTTTTGACTTTTGA 58.789 45.455 0.00 0.00 0.00 2.69
585 586 2.949644 ACGAGGGGAGTTTTGACTTTTG 59.050 45.455 0.00 0.00 0.00 2.44
586 587 3.292492 ACGAGGGGAGTTTTGACTTTT 57.708 42.857 0.00 0.00 0.00 2.27
587 588 3.644738 TCTACGAGGGGAGTTTTGACTTT 59.355 43.478 0.00 0.00 0.00 2.66
588 589 3.236896 TCTACGAGGGGAGTTTTGACTT 58.763 45.455 0.00 0.00 0.00 3.01
589 590 2.885616 TCTACGAGGGGAGTTTTGACT 58.114 47.619 0.00 0.00 0.00 3.41
590 591 3.257624 TCTTCTACGAGGGGAGTTTTGAC 59.742 47.826 0.00 0.00 0.00 3.18
591 592 3.257624 GTCTTCTACGAGGGGAGTTTTGA 59.742 47.826 0.00 0.00 0.00 2.69
592 593 3.586892 GTCTTCTACGAGGGGAGTTTTG 58.413 50.000 0.00 0.00 0.00 2.44
593 594 3.957591 GTCTTCTACGAGGGGAGTTTT 57.042 47.619 0.00 0.00 0.00 2.43
605 606 1.142097 GCAGGGGAGCGTCTTCTAC 59.858 63.158 0.00 0.00 0.00 2.59
606 607 1.304962 TGCAGGGGAGCGTCTTCTA 60.305 57.895 0.00 0.00 37.31 2.10
607 608 2.604686 TGCAGGGGAGCGTCTTCT 60.605 61.111 0.00 0.00 37.31 2.85
608 609 2.125350 CTGCAGGGGAGCGTCTTC 60.125 66.667 5.57 0.00 37.31 2.87
609 610 4.400961 GCTGCAGGGGAGCGTCTT 62.401 66.667 17.12 0.00 37.31 3.01
615 616 4.767255 GTCACGGCTGCAGGGGAG 62.767 72.222 17.12 0.00 0.00 4.30
618 619 3.535629 TTCAGTCACGGCTGCAGGG 62.536 63.158 17.12 0.00 36.49 4.45
619 620 1.597854 TTTCAGTCACGGCTGCAGG 60.598 57.895 17.12 1.57 36.49 4.85
620 621 0.882042 AGTTTCAGTCACGGCTGCAG 60.882 55.000 10.11 10.11 36.49 4.41
621 622 0.391228 TAGTTTCAGTCACGGCTGCA 59.609 50.000 0.50 0.00 36.49 4.41
622 623 1.661112 GATAGTTTCAGTCACGGCTGC 59.339 52.381 0.00 0.00 36.49 5.25
623 624 2.926200 CAGATAGTTTCAGTCACGGCTG 59.074 50.000 0.00 0.00 37.81 4.85
624 625 2.093973 CCAGATAGTTTCAGTCACGGCT 60.094 50.000 0.00 0.00 0.00 5.52
625 626 2.271800 CCAGATAGTTTCAGTCACGGC 58.728 52.381 0.00 0.00 0.00 5.68
626 627 2.093973 AGCCAGATAGTTTCAGTCACGG 60.094 50.000 0.00 0.00 0.00 4.94
627 628 3.238108 AGCCAGATAGTTTCAGTCACG 57.762 47.619 0.00 0.00 0.00 4.35
628 629 5.106515 GGAAAAGCCAGATAGTTTCAGTCAC 60.107 44.000 0.00 0.00 36.34 3.67
629 630 5.003804 GGAAAAGCCAGATAGTTTCAGTCA 58.996 41.667 0.00 0.00 36.34 3.41
630 631 4.396478 GGGAAAAGCCAGATAGTTTCAGTC 59.604 45.833 0.00 0.00 38.95 3.51
631 632 4.043435 AGGGAAAAGCCAGATAGTTTCAGT 59.957 41.667 0.00 0.00 38.95 3.41
632 633 4.397417 CAGGGAAAAGCCAGATAGTTTCAG 59.603 45.833 0.00 0.00 38.95 3.02
633 634 4.042809 TCAGGGAAAAGCCAGATAGTTTCA 59.957 41.667 0.00 0.00 38.95 2.69
634 635 4.589908 TCAGGGAAAAGCCAGATAGTTTC 58.410 43.478 0.00 0.00 38.95 2.78
635 636 4.289672 TCTCAGGGAAAAGCCAGATAGTTT 59.710 41.667 0.00 0.00 38.95 2.66
636 637 3.846588 TCTCAGGGAAAAGCCAGATAGTT 59.153 43.478 0.00 0.00 38.95 2.24
637 638 3.454082 CTCTCAGGGAAAAGCCAGATAGT 59.546 47.826 0.00 0.00 38.95 2.12
638 639 3.743899 GCTCTCAGGGAAAAGCCAGATAG 60.744 52.174 0.00 0.00 38.95 2.08
639 640 2.171448 GCTCTCAGGGAAAAGCCAGATA 59.829 50.000 0.00 0.00 38.95 1.98
640 641 1.064832 GCTCTCAGGGAAAAGCCAGAT 60.065 52.381 0.00 0.00 38.95 2.90
641 642 0.326264 GCTCTCAGGGAAAAGCCAGA 59.674 55.000 0.00 0.00 38.95 3.86
642 643 1.023513 CGCTCTCAGGGAAAAGCCAG 61.024 60.000 0.00 0.00 38.95 4.85
643 644 1.003355 CGCTCTCAGGGAAAAGCCA 60.003 57.895 0.00 0.00 38.95 4.75
644 645 1.746991 CCGCTCTCAGGGAAAAGCC 60.747 63.158 0.00 0.00 0.00 4.35
645 646 2.402572 GCCGCTCTCAGGGAAAAGC 61.403 63.158 0.00 0.00 0.00 3.51
646 647 2.103042 CGCCGCTCTCAGGGAAAAG 61.103 63.158 0.00 0.00 0.00 2.27
647 648 1.899437 ATCGCCGCTCTCAGGGAAAA 61.899 55.000 0.00 0.00 0.00 2.29
648 649 2.359169 ATCGCCGCTCTCAGGGAAA 61.359 57.895 0.00 0.00 0.00 3.13
649 650 2.759973 ATCGCCGCTCTCAGGGAA 60.760 61.111 0.00 0.00 0.00 3.97
650 651 3.531207 CATCGCCGCTCTCAGGGA 61.531 66.667 0.00 0.00 0.00 4.20
651 652 4.598894 CCATCGCCGCTCTCAGGG 62.599 72.222 0.00 0.00 0.00 4.45
652 653 2.490148 TACCATCGCCGCTCTCAGG 61.490 63.158 0.00 0.00 0.00 3.86
653 654 1.299468 GTACCATCGCCGCTCTCAG 60.299 63.158 0.00 0.00 0.00 3.35
692 693 0.441145 GTTCGATTGGCACACGTACC 59.559 55.000 11.20 0.00 39.29 3.34
850 851 1.518572 CCAGCACGATGTACCGACC 60.519 63.158 0.00 0.00 0.00 4.79
865 866 4.430765 CCCGGGTTCGACGTCCAG 62.431 72.222 14.18 0.00 39.00 3.86
1310 1328 2.002586 CCAACGCTCTGAATTCGATGT 58.997 47.619 0.04 1.34 0.00 3.06
2083 2696 2.658285 ACAGGTGCATGTCCCATTATG 58.342 47.619 0.00 0.00 0.00 1.90
2084 2697 3.025978 CAACAGGTGCATGTCCCATTAT 58.974 45.455 0.00 0.00 31.50 1.28
2085 2698 2.040947 TCAACAGGTGCATGTCCCATTA 59.959 45.455 0.00 0.00 31.50 1.90
2087 2700 0.405198 TCAACAGGTGCATGTCCCAT 59.595 50.000 0.00 0.00 31.50 4.00
2888 3538 7.395772 TGCTTCAGTTAACCATATCAAATTCCA 59.604 33.333 0.88 0.00 0.00 3.53
3056 3706 5.296780 TGAAAGTGTCAACTGTTTCATCTCC 59.703 40.000 0.00 0.00 36.51 3.71
3123 3773 4.067896 ACCTGTGAGTATTGTTTGCAGAG 58.932 43.478 0.00 0.00 0.00 3.35
3183 3833 6.794158 CGATTTTGTTTGTTGTTTTTCTTGCA 59.206 30.769 0.00 0.00 0.00 4.08
3184 3834 6.248210 CCGATTTTGTTTGTTGTTTTTCTTGC 59.752 34.615 0.00 0.00 0.00 4.01
3239 3889 6.783708 AAGAGGATTCCAAGACTACTACAG 57.216 41.667 5.29 0.00 0.00 2.74
3324 3974 1.799403 CCATCGCTCTGCATTGATCTC 59.201 52.381 0.00 0.00 0.00 2.75
3723 4381 5.461737 CCTCTATCGAAAAGAAGTCTCATGC 59.538 44.000 0.00 0.00 0.00 4.06
3754 4412 2.032377 GCGTCTCTCCTCATAGTTCTCG 60.032 54.545 0.00 0.00 0.00 4.04
4654 5359 2.104792 CACCCCGAACATCATATGGAGT 59.895 50.000 2.13 0.00 33.60 3.85
4795 5509 3.090037 TCCTTTCGACGAAGATCTCCTT 58.910 45.455 10.61 0.00 37.93 3.36
4863 5578 1.535649 CGGCTTGTTGCATGTGTTTCA 60.536 47.619 0.00 0.00 45.15 2.69
5185 5900 2.890945 GCCCAACTGTACAATTCCAACT 59.109 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.