Multiple sequence alignment - TraesCS7D01G255300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G255300 chr7D 100.000 2207 0 0 1 2207 231565608 231567814 0.000000e+00 4076.0
1 TraesCS7D01G255300 chr7D 100.000 209 0 0 1345 1553 77241563 77241771 9.560000e-104 387.0
2 TraesCS7D01G255300 chr7D 99.000 200 2 0 1587 1786 231580613 231580414 2.080000e-95 359.0
3 TraesCS7D01G255300 chr7D 99.000 200 2 0 1587 1786 593594160 593593961 2.080000e-95 359.0
4 TraesCS7D01G255300 chr7D 96.815 157 3 2 1898 2054 104558947 104558793 6.040000e-66 261.0
5 TraesCS7D01G255300 chr7D 100.000 40 0 0 1552 1591 231529532 231529571 8.450000e-10 75.0
6 TraesCS7D01G255300 chr7D 100.000 40 0 0 1552 1591 231530058 231530097 8.450000e-10 75.0
7 TraesCS7D01G255300 chr7D 100.000 40 0 0 1552 1591 231530565 231530604 8.450000e-10 75.0
8 TraesCS7D01G255300 chr6D 99.674 614 2 0 591 1204 389254647 389254034 0.000000e+00 1123.0
9 TraesCS7D01G255300 chr6D 100.000 209 0 0 1345 1553 389247182 389247390 9.560000e-104 387.0
10 TraesCS7D01G255300 chr6D 99.000 200 2 0 1587 1786 389250215 389250414 2.080000e-95 359.0
11 TraesCS7D01G255300 chr6D 98.500 200 3 0 1587 1786 389250760 389250959 9.690000e-94 353.0
12 TraesCS7D01G255300 chr6D 98.500 200 3 0 1587 1786 389255010 389255209 9.690000e-94 353.0
13 TraesCS7D01G255300 chr6D 98.639 147 2 0 1898 2044 45515167 45515313 6.040000e-66 261.0
14 TraesCS7D01G255300 chr6D 99.296 142 1 0 1206 1347 431401340 431401199 7.820000e-65 257.0
15 TraesCS7D01G255300 chr6D 98.592 142 2 0 1206 1347 431404221 431404080 3.640000e-63 252.0
16 TraesCS7D01G255300 chr6D 97.778 45 0 1 2163 2207 429819003 429819046 2.350000e-10 76.8
17 TraesCS7D01G255300 chr6D 100.000 40 0 0 1552 1591 322235977 322236016 8.450000e-10 75.0
18 TraesCS7D01G255300 chr5D 99.674 614 2 0 591 1204 503228726 503228113 0.000000e+00 1123.0
19 TraesCS7D01G255300 chr5D 99.674 614 2 0 591 1204 503267824 503268437 0.000000e+00 1123.0
20 TraesCS7D01G255300 chr5D 99.674 614 1 1 591 1204 503238504 503237892 0.000000e+00 1122.0
21 TraesCS7D01G255300 chr5D 99.511 614 3 0 591 1204 503242753 503242140 0.000000e+00 1118.0
22 TraesCS7D01G255300 chr5D 99.322 590 4 0 1 590 503330224 503330813 0.000000e+00 1068.0
23 TraesCS7D01G255300 chr5D 97.966 590 11 1 1 590 6236586 6235998 0.000000e+00 1022.0
24 TraesCS7D01G255300 chr5D 99.320 147 1 0 1898 2044 483807182 483807328 1.300000e-67 267.0
25 TraesCS7D01G255300 chr5D 98.639 147 2 0 1898 2044 6184538 6184684 6.040000e-66 261.0
26 TraesCS7D01G255300 chr5D 96.178 157 4 2 1898 2054 503283702 503283548 2.810000e-64 255.0
27 TraesCS7D01G255300 chr5D 98.592 142 2 0 1206 1347 6206509 6206650 3.640000e-63 252.0
28 TraesCS7D01G255300 chr5D 98.592 142 2 0 1206 1347 554199686 554199827 3.640000e-63 252.0
29 TraesCS7D01G255300 chr5D 98.592 142 2 0 1206 1347 554201660 554201519 3.640000e-63 252.0
30 TraesCS7D01G255300 chr5D 100.000 118 0 0 2045 2162 6197684 6197801 3.690000e-53 219.0
31 TraesCS7D01G255300 chr5D 100.000 118 0 0 2045 2162 503209012 503208895 3.690000e-53 219.0
32 TraesCS7D01G255300 chr5D 100.000 118 0 0 2045 2162 503209528 503209411 3.690000e-53 219.0
33 TraesCS7D01G255300 chr5D 97.778 45 0 1 2163 2207 6218061 6218018 2.350000e-10 76.8
34 TraesCS7D01G255300 chr5D 97.778 45 0 1 2163 2207 357563544 357563587 2.350000e-10 76.8
35 TraesCS7D01G255300 chr5D 97.778 45 0 1 2163 2207 483801636 483801593 2.350000e-10 76.8
36 TraesCS7D01G255300 chr5D 100.000 40 0 0 1552 1591 357545930 357545969 8.450000e-10 75.0
37 TraesCS7D01G255300 chr3D 99.674 614 2 0 591 1204 589266045 589266658 0.000000e+00 1123.0
38 TraesCS7D01G255300 chr3D 99.000 200 2 0 1587 1786 427289615 427289416 2.080000e-95 359.0
39 TraesCS7D01G255300 chr3D 98.675 151 2 0 1898 2048 598875206 598875056 3.610000e-68 268.0
40 TraesCS7D01G255300 chr3D 100.000 115 0 0 1787 1901 213392526 213392640 1.720000e-51 213.0
41 TraesCS7D01G255300 chr7B 99.674 614 1 1 591 1204 663101947 663102559 0.000000e+00 1122.0
42 TraesCS7D01G255300 chr7B 99.000 200 2 0 1587 1786 663101584 663101385 2.080000e-95 359.0
43 TraesCS7D01G255300 chr3A 99.511 614 3 0 591 1204 66007654 66008267 0.000000e+00 1118.0
44 TraesCS7D01G255300 chr3A 100.000 209 0 0 1345 1553 593313328 593313120 9.560000e-104 387.0
45 TraesCS7D01G255300 chr3A 99.522 209 1 0 1345 1553 66006492 66006700 4.450000e-102 381.0
46 TraesCS7D01G255300 chr1D 99.511 614 3 0 591 1204 51916779 51917392 0.000000e+00 1118.0
47 TraesCS7D01G255300 chr1D 99.492 590 3 0 1 590 254476311 254476900 0.000000e+00 1074.0
48 TraesCS7D01G255300 chr1D 98.475 590 8 1 1 590 290506481 290507069 0.000000e+00 1038.0
49 TraesCS7D01G255300 chr1D 97.114 589 15 1 2 590 244200608 244201194 0.000000e+00 992.0
50 TraesCS7D01G255300 chr1D 99.522 209 1 0 1345 1553 254383381 254383589 4.450000e-102 381.0
51 TraesCS7D01G255300 chr1D 98.500 200 3 0 1587 1786 254384181 254383982 9.690000e-94 353.0
52 TraesCS7D01G255300 chr1D 97.452 157 2 2 1898 2054 254402510 254402356 1.300000e-67 267.0
53 TraesCS7D01G255300 chr1D 99.296 142 1 0 1206 1347 483921644 483921785 7.820000e-65 257.0
54 TraesCS7D01G255300 chr1D 98.592 142 2 0 1206 1347 394180231 394180090 3.640000e-63 252.0
55 TraesCS7D01G255300 chr1D 100.000 118 0 0 2045 2162 206073744 206073861 3.690000e-53 219.0
56 TraesCS7D01G255300 chr1D 97.778 45 0 1 2163 2207 244393531 244393574 2.350000e-10 76.8
57 TraesCS7D01G255300 chr1D 97.778 45 0 1 2163 2207 254483117 254483160 2.350000e-10 76.8
58 TraesCS7D01G255300 chr1D 100.000 40 0 0 1552 1591 254420309 254420348 8.450000e-10 75.0
59 TraesCS7D01G255300 chr2D 99.492 590 3 0 1 590 648663990 648663401 0.000000e+00 1074.0
60 TraesCS7D01G255300 chr2D 98.592 142 2 0 1206 1347 334227230 334227089 3.640000e-63 252.0
61 TraesCS7D01G255300 chr2D 100.000 118 0 0 2045 2162 578712239 578712356 3.690000e-53 219.0
62 TraesCS7D01G255300 chr2D 100.000 115 0 0 1787 1901 33934570 33934456 1.720000e-51 213.0
63 TraesCS7D01G255300 chr2D 100.000 115 0 0 1787 1901 272800904 272801018 1.720000e-51 213.0
64 TraesCS7D01G255300 chr2D 100.000 115 0 0 1787 1901 630271047 630270933 1.720000e-51 213.0
65 TraesCS7D01G255300 chr2D 100.000 40 0 0 1552 1591 33937395 33937434 8.450000e-10 75.0
66 TraesCS7D01G255300 chr1A 98.983 590 6 0 1 590 554448632 554448043 0.000000e+00 1057.0
67 TraesCS7D01G255300 chr1A 97.778 45 0 1 2163 2207 4011287 4011330 2.350000e-10 76.8
68 TraesCS7D01G255300 chr1A 97.778 45 0 1 2163 2207 554472458 554472415 2.350000e-10 76.8
69 TraesCS7D01G255300 chr3B 98.646 591 7 1 1 590 201492316 201492906 0.000000e+00 1046.0
70 TraesCS7D01G255300 chr3B 99.522 209 1 0 1345 1553 201538161 201537953 4.450000e-102 381.0
71 TraesCS7D01G255300 chr3B 99.130 115 1 0 1787 1901 201560020 201560134 7.990000e-50 207.0
72 TraesCS7D01G255300 chrUn 99.642 558 2 0 33 590 426381040 426380483 0.000000e+00 1020.0
73 TraesCS7D01G255300 chrUn 100.000 209 0 0 1345 1553 216507478 216507686 9.560000e-104 387.0
74 TraesCS7D01G255300 chrUn 99.522 209 1 0 1345 1553 441243838 441244046 4.450000e-102 381.0
75 TraesCS7D01G255300 chrUn 97.452 157 2 2 1898 2054 458727250 458727096 1.300000e-67 267.0
76 TraesCS7D01G255300 chrUn 99.296 142 1 0 1206 1347 317471872 317472013 7.820000e-65 257.0
77 TraesCS7D01G255300 chrUn 100.000 118 0 0 2045 2162 93421244 93421361 3.690000e-53 219.0
78 TraesCS7D01G255300 chrUn 100.000 118 0 0 2045 2162 383641665 383641782 3.690000e-53 219.0
79 TraesCS7D01G255300 chrUn 100.000 118 0 0 2045 2162 455370730 455370613 3.690000e-53 219.0
80 TraesCS7D01G255300 chrUn 100.000 115 0 0 1787 1901 327662550 327662664 1.720000e-51 213.0
81 TraesCS7D01G255300 chrUn 100.000 40 0 0 1552 1591 390488328 390488289 8.450000e-10 75.0
82 TraesCS7D01G255300 chr2A 99.522 209 1 0 1345 1553 726907815 726908023 4.450000e-102 381.0
83 TraesCS7D01G255300 chr2A 99.000 200 2 0 1587 1786 726899676 726899875 2.080000e-95 359.0
84 TraesCS7D01G255300 chr5A 97.959 147 3 0 1898 2044 607203678 607203824 2.810000e-64 255.0
85 TraesCS7D01G255300 chr5A 100.000 115 0 0 1787 1901 442271133 442271019 1.720000e-51 213.0
86 TraesCS7D01G255300 chr6B 100.000 118 0 0 2045 2162 621325317 621325200 3.690000e-53 219.0
87 TraesCS7D01G255300 chr4D 100.000 115 0 0 1787 1901 220262892 220263006 1.720000e-51 213.0
88 TraesCS7D01G255300 chr5B 99.130 115 1 0 1787 1901 429033178 429033064 7.990000e-50 207.0
89 TraesCS7D01G255300 chr6A 97.778 45 0 1 2163 2207 523643944 523643901 2.350000e-10 76.8
90 TraesCS7D01G255300 chr6A 100.000 40 0 0 1552 1591 192822271 192822232 8.450000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G255300 chr7D 231565608 231567814 2206 False 4076.000000 4076 100.000000 1 2207 1 chr7D.!!$F2 2206
1 TraesCS7D01G255300 chr6D 389254034 389254647 613 True 1123.000000 1123 99.674000 591 1204 1 chr6D.!!$R1 613
2 TraesCS7D01G255300 chr6D 389247182 389250959 3777 False 366.333333 387 99.166667 1345 1786 3 chr6D.!!$F5 441
3 TraesCS7D01G255300 chr6D 431401199 431404221 3022 True 254.500000 257 98.944000 1206 1347 2 chr6D.!!$R2 141
4 TraesCS7D01G255300 chr5D 503228113 503228726 613 True 1123.000000 1123 99.674000 591 1204 1 chr5D.!!$R4 613
5 TraesCS7D01G255300 chr5D 503267824 503268437 613 False 1123.000000 1123 99.674000 591 1204 1 chr5D.!!$F7 613
6 TraesCS7D01G255300 chr5D 503237892 503242753 4861 True 1120.000000 1122 99.592500 591 1204 2 chr5D.!!$R8 613
7 TraesCS7D01G255300 chr5D 503330224 503330813 589 False 1068.000000 1068 99.322000 1 590 1 chr5D.!!$F8 589
8 TraesCS7D01G255300 chr5D 6235998 6236586 588 True 1022.000000 1022 97.966000 1 590 1 chr5D.!!$R2 589
9 TraesCS7D01G255300 chr5D 503208895 503209528 633 True 219.000000 219 100.000000 2045 2162 2 chr5D.!!$R7 117
10 TraesCS7D01G255300 chr3D 589266045 589266658 613 False 1123.000000 1123 99.674000 591 1204 1 chr3D.!!$F2 613
11 TraesCS7D01G255300 chr7B 663101947 663102559 612 False 1122.000000 1122 99.674000 591 1204 1 chr7B.!!$F1 613
12 TraesCS7D01G255300 chr3A 66006492 66008267 1775 False 749.500000 1118 99.516500 591 1553 2 chr3A.!!$F1 962
13 TraesCS7D01G255300 chr1D 51916779 51917392 613 False 1118.000000 1118 99.511000 591 1204 1 chr1D.!!$F1 613
14 TraesCS7D01G255300 chr1D 254476311 254476900 589 False 1074.000000 1074 99.492000 1 590 1 chr1D.!!$F7 589
15 TraesCS7D01G255300 chr1D 290506481 290507069 588 False 1038.000000 1038 98.475000 1 590 1 chr1D.!!$F9 589
16 TraesCS7D01G255300 chr1D 244200608 244201194 586 False 992.000000 992 97.114000 2 590 1 chr1D.!!$F3 588
17 TraesCS7D01G255300 chr2D 648663401 648663990 589 True 1074.000000 1074 99.492000 1 590 1 chr2D.!!$R4 589
18 TraesCS7D01G255300 chr1A 554448043 554448632 589 True 1057.000000 1057 98.983000 1 590 1 chr1A.!!$R1 589
19 TraesCS7D01G255300 chr3B 201492316 201492906 590 False 1046.000000 1046 98.646000 1 590 1 chr3B.!!$F1 589
20 TraesCS7D01G255300 chrUn 426380483 426381040 557 True 1020.000000 1020 99.642000 33 590 1 chrUn.!!$R2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 518 5.240121 GGTATAGAAAGACGGTTTCCACAA 58.76 41.667 8.46 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 11003 0.377203 GGGATTTCCACAACGATCGC 59.623 55.0 16.6 0.0 37.91 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
515 518 5.240121 GGTATAGAAAGACGGTTTCCACAA 58.760 41.667 8.46 0.00 0.00 3.33
1193 6015 9.316730 TCTTTTCAATTTCCATTCAAGAGTTTG 57.683 29.630 0.00 0.00 35.57 2.93
1204 6026 7.939039 TCCATTCAAGAGTTTGTATCTGTTTCT 59.061 33.333 0.00 0.00 35.73 2.52
1562 7049 4.397348 GGCGGGATTGCCGATTAT 57.603 55.556 21.65 0.00 46.75 1.28
1564 7051 1.084289 GGCGGGATTGCCGATTATAC 58.916 55.000 21.65 0.74 46.75 1.47
1565 7052 1.084289 GCGGGATTGCCGATTATACC 58.916 55.000 21.65 0.00 33.83 2.73
1572 7059 4.080526 GGATTGCCGATTATACCCCTACAT 60.081 45.833 0.00 0.00 0.00 2.29
1573 7060 5.129815 GGATTGCCGATTATACCCCTACATA 59.870 44.000 0.00 0.00 0.00 2.29
1574 7061 5.410355 TTGCCGATTATACCCCTACATAC 57.590 43.478 0.00 0.00 0.00 2.39
1575 7062 3.444742 TGCCGATTATACCCCTACATACG 59.555 47.826 0.00 0.00 0.00 3.06
1578 7065 4.142315 CCGATTATACCCCTACATACGTGG 60.142 50.000 0.00 0.00 0.00 4.94
1579 7066 4.460382 CGATTATACCCCTACATACGTGGT 59.540 45.833 0.00 0.00 0.00 4.16
1580 7067 5.047802 CGATTATACCCCTACATACGTGGTT 60.048 44.000 0.00 0.00 0.00 3.67
1581 7068 6.150976 CGATTATACCCCTACATACGTGGTTA 59.849 42.308 0.00 0.00 0.00 2.85
1582 7069 6.648879 TTATACCCCTACATACGTGGTTAC 57.351 41.667 0.00 0.00 0.00 2.50
1583 7070 2.110578 ACCCCTACATACGTGGTTACC 58.889 52.381 0.00 0.00 0.00 2.85
1584 7071 2.109774 CCCCTACATACGTGGTTACCA 58.890 52.381 0.00 0.00 0.00 3.25
1585 7072 2.101917 CCCCTACATACGTGGTTACCAG 59.898 54.545 3.45 1.61 32.34 4.00
1589 10053 5.278660 CCCTACATACGTGGTTACCAGATAC 60.279 48.000 3.45 0.00 32.34 2.24
1786 10795 2.297880 TCGGAGAAGAAACAATGACGGA 59.702 45.455 0.00 0.00 0.00 4.69
1788 10797 3.496884 CGGAGAAGAAACAATGACGGAAA 59.503 43.478 0.00 0.00 0.00 3.13
1789 10798 4.377431 CGGAGAAGAAACAATGACGGAAAG 60.377 45.833 0.00 0.00 0.00 2.62
1790 10799 4.755123 GGAGAAGAAACAATGACGGAAAGA 59.245 41.667 0.00 0.00 0.00 2.52
1791 10800 5.334182 GGAGAAGAAACAATGACGGAAAGAC 60.334 44.000 0.00 0.00 0.00 3.01
1792 10801 5.123227 AGAAGAAACAATGACGGAAAGACA 58.877 37.500 0.00 0.00 0.00 3.41
1793 10802 5.588648 AGAAGAAACAATGACGGAAAGACAA 59.411 36.000 0.00 0.00 0.00 3.18
1794 10803 5.828299 AGAAACAATGACGGAAAGACAAA 57.172 34.783 0.00 0.00 0.00 2.83
1795 10804 6.202516 AGAAACAATGACGGAAAGACAAAA 57.797 33.333 0.00 0.00 0.00 2.44
1796 10805 6.805713 AGAAACAATGACGGAAAGACAAAAT 58.194 32.000 0.00 0.00 0.00 1.82
1797 10806 6.918022 AGAAACAATGACGGAAAGACAAAATC 59.082 34.615 0.00 0.00 0.00 2.17
1798 10807 5.766150 ACAATGACGGAAAGACAAAATCA 57.234 34.783 0.00 0.00 0.00 2.57
1799 10808 6.142818 ACAATGACGGAAAGACAAAATCAA 57.857 33.333 0.00 0.00 0.00 2.57
1800 10809 6.568869 ACAATGACGGAAAGACAAAATCAAA 58.431 32.000 0.00 0.00 0.00 2.69
1801 10810 6.697019 ACAATGACGGAAAGACAAAATCAAAG 59.303 34.615 0.00 0.00 0.00 2.77
1803 10812 6.202516 TGACGGAAAGACAAAATCAAAGTT 57.797 33.333 0.00 0.00 0.00 2.66
1806 10815 7.913297 TGACGGAAAGACAAAATCAAAGTTTAG 59.087 33.333 0.00 0.00 0.00 1.85
1807 10816 7.768240 ACGGAAAGACAAAATCAAAGTTTAGT 58.232 30.769 0.00 0.00 0.00 2.24
1808 10817 8.895737 ACGGAAAGACAAAATCAAAGTTTAGTA 58.104 29.630 0.00 0.00 0.00 1.82
1809 10818 9.724839 CGGAAAGACAAAATCAAAGTTTAGTAA 57.275 29.630 0.00 0.00 0.00 2.24
1831 10840 8.808529 AGTAATCAGTAATCGTTCTTGAATTCG 58.191 33.333 0.04 0.00 0.00 3.34
1832 10841 7.827819 AATCAGTAATCGTTCTTGAATTCGA 57.172 32.000 0.04 0.00 36.77 3.71
1834 10843 7.278211 TCAGTAATCGTTCTTGAATTCGAAG 57.722 36.000 3.35 6.19 35.99 3.79
1835 10844 7.088272 TCAGTAATCGTTCTTGAATTCGAAGA 58.912 34.615 3.35 13.14 35.99 2.87
1836 10845 7.759886 TCAGTAATCGTTCTTGAATTCGAAGAT 59.240 33.333 16.13 8.22 35.04 2.40
1838 10847 8.936864 AGTAATCGTTCTTGAATTCGAAGATTT 58.063 29.630 16.13 0.00 35.04 2.17
1839 10848 9.543018 GTAATCGTTCTTGAATTCGAAGATTTT 57.457 29.630 16.13 0.00 35.04 1.82
1841 10850 8.660968 ATCGTTCTTGAATTCGAAGATTTTTC 57.339 30.769 16.13 2.68 35.04 2.29
1843 10852 8.342634 TCGTTCTTGAATTCGAAGATTTTTCTT 58.657 29.630 16.13 0.00 35.04 2.52
1847 10856 9.801873 TCTTGAATTCGAAGATTTTTCTTTGTT 57.198 25.926 3.35 0.00 35.04 2.83
1870 10879 9.887406 TGTTTATTTTACTTTCAGACGAATTCC 57.113 29.630 0.00 0.00 0.00 3.01
1877 10886 8.842358 TTACTTTCAGACGAATTCCTAATTGT 57.158 30.769 0.00 0.00 0.00 2.71
1878 10887 7.745620 ACTTTCAGACGAATTCCTAATTGTT 57.254 32.000 0.00 0.00 0.00 2.83
1879 10888 8.166422 ACTTTCAGACGAATTCCTAATTGTTT 57.834 30.769 0.00 0.00 0.00 2.83
1880 10889 8.076178 ACTTTCAGACGAATTCCTAATTGTTTG 58.924 33.333 0.00 0.00 0.00 2.93
1881 10890 7.737972 TTCAGACGAATTCCTAATTGTTTGA 57.262 32.000 0.00 0.00 29.84 2.69
1884 10893 8.792633 TCAGACGAATTCCTAATTGTTTGAATT 58.207 29.630 0.00 0.00 39.45 2.17
1885 10894 8.853345 CAGACGAATTCCTAATTGTTTGAATTG 58.147 33.333 0.00 0.00 37.51 2.32
1886 10895 8.576442 AGACGAATTCCTAATTGTTTGAATTGT 58.424 29.630 0.00 0.00 37.51 2.71
1887 10896 8.519492 ACGAATTCCTAATTGTTTGAATTGTG 57.481 30.769 0.00 0.00 37.51 3.33
1888 10897 8.141268 ACGAATTCCTAATTGTTTGAATTGTGT 58.859 29.630 0.00 0.00 37.51 3.72
1889 10898 9.619316 CGAATTCCTAATTGTTTGAATTGTGTA 57.381 29.630 0.00 0.00 37.51 2.90
1895 10904 9.573133 CCTAATTGTTTGAATTGTGTAATCTCC 57.427 33.333 0.00 0.00 0.00 3.71
1897 10906 6.968263 TTGTTTGAATTGTGTAATCTCCCA 57.032 33.333 0.00 0.00 0.00 4.37
1898 10907 7.537596 TTGTTTGAATTGTGTAATCTCCCAT 57.462 32.000 0.00 0.00 0.00 4.00
1900 10909 8.642935 TGTTTGAATTGTGTAATCTCCCATTA 57.357 30.769 0.00 0.00 0.00 1.90
1901 10910 8.519526 TGTTTGAATTGTGTAATCTCCCATTAC 58.480 33.333 0.00 0.00 35.62 1.89
1903 10912 8.642935 TTGAATTGTGTAATCTCCCATTACAA 57.357 30.769 8.42 0.00 43.50 2.41
1904 10913 8.642935 TGAATTGTGTAATCTCCCATTACAAA 57.357 30.769 8.42 1.75 43.50 2.83
1906 10915 9.921637 GAATTGTGTAATCTCCCATTACAAAAA 57.078 29.630 12.09 9.06 41.95 1.94
1955 11005 4.446371 AGATTCTATCTGAAGGGTTTGCG 58.554 43.478 0.00 0.00 38.44 4.85
1956 11006 3.973206 TTCTATCTGAAGGGTTTGCGA 57.027 42.857 0.00 0.00 0.00 5.10
1958 11008 4.060038 TCTATCTGAAGGGTTTGCGATC 57.940 45.455 0.00 0.00 0.00 3.69
1959 11009 1.656652 ATCTGAAGGGTTTGCGATCG 58.343 50.000 11.69 11.69 0.00 3.69
1960 11010 0.320374 TCTGAAGGGTTTGCGATCGT 59.680 50.000 17.81 0.00 0.00 3.73
1962 11012 0.871722 TGAAGGGTTTGCGATCGTTG 59.128 50.000 17.81 0.00 0.00 4.10
1963 11013 0.872388 GAAGGGTTTGCGATCGTTGT 59.128 50.000 17.81 0.00 0.00 3.32
1964 11014 0.591170 AAGGGTTTGCGATCGTTGTG 59.409 50.000 17.81 0.00 0.00 3.33
1965 11015 1.209127 GGGTTTGCGATCGTTGTGG 59.791 57.895 17.81 0.00 0.00 4.17
1966 11016 1.231958 GGGTTTGCGATCGTTGTGGA 61.232 55.000 17.81 0.00 0.00 4.02
1967 11017 0.589223 GGTTTGCGATCGTTGTGGAA 59.411 50.000 17.81 0.37 0.00 3.53
1968 11018 1.002251 GGTTTGCGATCGTTGTGGAAA 60.002 47.619 17.81 0.00 0.00 3.13
1969 11019 2.351350 GGTTTGCGATCGTTGTGGAAAT 60.351 45.455 17.81 0.00 0.00 2.17
1970 11020 2.892373 TTGCGATCGTTGTGGAAATC 57.108 45.000 17.81 0.00 0.00 2.17
1971 11021 1.083489 TGCGATCGTTGTGGAAATCC 58.917 50.000 17.81 0.00 0.00 3.01
1972 11022 0.377203 GCGATCGTTGTGGAAATCCC 59.623 55.000 17.81 0.00 34.29 3.85
1973 11023 1.732941 CGATCGTTGTGGAAATCCCA 58.267 50.000 7.03 0.00 44.25 4.37
1983 11033 3.194005 TGGAAATCCCATTCTCGCTAC 57.806 47.619 0.00 0.00 40.82 3.58
1984 11034 2.135933 GGAAATCCCATTCTCGCTACG 58.864 52.381 0.00 0.00 34.14 3.51
1985 11035 2.135933 GAAATCCCATTCTCGCTACGG 58.864 52.381 0.00 0.00 0.00 4.02
1986 11036 0.393077 AATCCCATTCTCGCTACGGG 59.607 55.000 0.00 0.00 38.34 5.28
1987 11037 1.076559 TCCCATTCTCGCTACGGGA 60.077 57.895 0.00 0.00 43.77 5.14
1996 11087 5.728351 TTCTCGCTACGGGAATTATTTTG 57.272 39.130 0.00 0.00 41.63 2.44
1999 11090 3.872771 TCGCTACGGGAATTATTTTGTCC 59.127 43.478 0.00 0.00 0.00 4.02
2003 11094 5.163733 GCTACGGGAATTATTTTGTCCGAAA 60.164 40.000 6.57 0.00 40.53 3.46
2017 11108 8.637281 TTTTGTCCGAAAGAAAAAGAAATACC 57.363 30.769 0.00 0.00 33.14 2.73
2019 11110 7.336161 TGTCCGAAAGAAAAAGAAATACCAA 57.664 32.000 0.00 0.00 0.00 3.67
2021 11112 7.918562 TGTCCGAAAGAAAAAGAAATACCAAAG 59.081 33.333 0.00 0.00 0.00 2.77
2022 11113 7.919091 GTCCGAAAGAAAAAGAAATACCAAAGT 59.081 33.333 0.00 0.00 0.00 2.66
2023 11114 8.471609 TCCGAAAGAAAAAGAAATACCAAAGTT 58.528 29.630 0.00 0.00 0.00 2.66
2024 11115 9.093970 CCGAAAGAAAAAGAAATACCAAAGTTT 57.906 29.630 0.00 0.00 0.00 2.66
2035 11126 9.893305 AGAAATACCAAAGTTTCAGAATTTACG 57.107 29.630 0.00 0.00 36.92 3.18
2039 11130 5.531287 ACCAAAGTTTCAGAATTTACGCTCT 59.469 36.000 0.00 0.00 0.00 4.09
2040 11131 6.708949 ACCAAAGTTTCAGAATTTACGCTCTA 59.291 34.615 0.00 0.00 0.00 2.43
2041 11132 7.390718 ACCAAAGTTTCAGAATTTACGCTCTAT 59.609 33.333 0.00 0.00 0.00 1.98
2042 11133 8.237267 CCAAAGTTTCAGAATTTACGCTCTATT 58.763 33.333 0.00 0.00 0.00 1.73
2165 12321 7.307493 TGAATGCATTTCCATACTATATCGC 57.693 36.000 14.33 0.00 33.04 4.58
2166 12322 5.973651 ATGCATTTCCATACTATATCGCG 57.026 39.130 0.00 0.00 0.00 5.87
2167 12323 4.180817 TGCATTTCCATACTATATCGCGG 58.819 43.478 6.13 0.00 0.00 6.46
2168 12324 4.181578 GCATTTCCATACTATATCGCGGT 58.818 43.478 6.13 0.00 0.00 5.68
2169 12325 5.105675 TGCATTTCCATACTATATCGCGGTA 60.106 40.000 6.13 2.77 0.00 4.02
2170 12326 5.983720 GCATTTCCATACTATATCGCGGTAT 59.016 40.000 17.30 17.30 0.00 2.73
2171 12327 6.144080 GCATTTCCATACTATATCGCGGTATC 59.856 42.308 16.59 0.00 0.00 2.24
2172 12328 7.426410 CATTTCCATACTATATCGCGGTATCT 58.574 38.462 16.59 4.94 0.00 1.98
2173 12329 7.400599 TTTCCATACTATATCGCGGTATCTT 57.599 36.000 16.59 6.52 0.00 2.40
2174 12330 7.400599 TTCCATACTATATCGCGGTATCTTT 57.599 36.000 16.59 3.89 0.00 2.52
2175 12331 7.400599 TCCATACTATATCGCGGTATCTTTT 57.599 36.000 16.59 1.31 0.00 2.27
2176 12332 7.833786 TCCATACTATATCGCGGTATCTTTTT 58.166 34.615 16.59 0.00 0.00 1.94
2177 12333 7.972277 TCCATACTATATCGCGGTATCTTTTTC 59.028 37.037 16.59 0.00 0.00 2.29
2178 12334 7.758076 CCATACTATATCGCGGTATCTTTTTCA 59.242 37.037 16.59 0.00 0.00 2.69
2179 12335 8.584600 CATACTATATCGCGGTATCTTTTTCAC 58.415 37.037 16.59 0.00 0.00 3.18
2181 12337 6.862090 ACTATATCGCGGTATCTTTTTCACTC 59.138 38.462 16.59 0.00 0.00 3.51
2182 12338 3.306917 TCGCGGTATCTTTTTCACTCA 57.693 42.857 6.13 0.00 0.00 3.41
2183 12339 3.250744 TCGCGGTATCTTTTTCACTCAG 58.749 45.455 6.13 0.00 0.00 3.35
2184 12340 2.348666 CGCGGTATCTTTTTCACTCAGG 59.651 50.000 0.00 0.00 0.00 3.86
2185 12341 3.596214 GCGGTATCTTTTTCACTCAGGA 58.404 45.455 0.00 0.00 0.00 3.86
2186 12342 3.371285 GCGGTATCTTTTTCACTCAGGAC 59.629 47.826 0.00 0.00 0.00 3.85
2188 12344 4.627467 CGGTATCTTTTTCACTCAGGACTG 59.373 45.833 0.00 0.00 0.00 3.51
2189 12345 4.938226 GGTATCTTTTTCACTCAGGACTGG 59.062 45.833 0.00 0.00 0.00 4.00
2190 12346 3.492102 TCTTTTTCACTCAGGACTGGG 57.508 47.619 0.00 0.00 37.03 4.45
2194 12350 4.553330 TTTTCACTCAGGACTGGGTATC 57.447 45.455 4.24 0.00 43.61 2.24
2195 12351 2.160721 TCACTCAGGACTGGGTATCC 57.839 55.000 4.24 0.00 43.61 2.59
2197 12353 2.023015 TCACTCAGGACTGGGTATCCAT 60.023 50.000 4.24 0.00 43.61 3.41
2198 12354 2.103771 CACTCAGGACTGGGTATCCATG 59.896 54.545 4.24 0.00 43.61 3.66
2199 12355 1.071385 CTCAGGACTGGGTATCCATGC 59.929 57.143 0.00 0.00 43.11 4.06
2201 12357 0.839946 AGGACTGGGTATCCATGCAC 59.160 55.000 0.00 0.00 43.11 4.57
2204 12360 0.548031 ACTGGGTATCCATGCACAGG 59.452 55.000 11.12 0.00 46.46 4.00
2205 12361 0.548031 CTGGGTATCCATGCACAGGT 59.452 55.000 0.00 0.00 43.11 4.00
2206 12362 0.255604 TGGGTATCCATGCACAGGTG 59.744 55.000 6.89 0.00 38.32 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
515 518 3.422473 GCGCTCGTTTTTGTTGTTTTTGT 60.422 39.130 0.00 0.00 0.00 2.83
1553 7040 3.444742 CGTATGTAGGGGTATAATCGGCA 59.555 47.826 0.00 0.00 0.00 5.69
1554 7041 3.445096 ACGTATGTAGGGGTATAATCGGC 59.555 47.826 0.00 0.00 0.00 5.54
1555 7042 4.142315 CCACGTATGTAGGGGTATAATCGG 60.142 50.000 0.00 0.00 0.00 4.18
1561 7048 3.897505 GGTAACCACGTATGTAGGGGTAT 59.102 47.826 0.00 0.00 0.00 2.73
1562 7049 3.295973 GGTAACCACGTATGTAGGGGTA 58.704 50.000 0.00 0.00 0.00 3.69
1564 7051 2.101917 CTGGTAACCACGTATGTAGGGG 59.898 54.545 0.00 0.00 0.00 4.79
1565 7052 3.025978 TCTGGTAACCACGTATGTAGGG 58.974 50.000 0.00 0.31 0.00 3.53
1572 7059 4.644685 GGTAAGGTATCTGGTAACCACGTA 59.355 45.833 0.00 0.00 38.30 3.57
1573 7060 3.448660 GGTAAGGTATCTGGTAACCACGT 59.551 47.826 0.00 0.00 38.30 4.49
1574 7061 3.448301 TGGTAAGGTATCTGGTAACCACG 59.552 47.826 0.00 0.00 38.30 4.94
1575 7062 5.425196 TTGGTAAGGTATCTGGTAACCAC 57.575 43.478 0.00 0.00 38.30 4.16
1717 10181 4.329545 ACCTCCACGCGGCATTGT 62.330 61.111 12.47 0.00 0.00 2.71
1806 10815 8.804743 TCGAATTCAAGAACGATTACTGATTAC 58.195 33.333 6.22 0.00 0.00 1.89
1807 10816 8.920509 TCGAATTCAAGAACGATTACTGATTA 57.079 30.769 6.22 0.00 0.00 1.75
1808 10817 7.827819 TCGAATTCAAGAACGATTACTGATT 57.172 32.000 6.22 0.00 0.00 2.57
1809 10818 7.759886 TCTTCGAATTCAAGAACGATTACTGAT 59.240 33.333 14.20 0.00 34.85 2.90
1810 10819 7.088272 TCTTCGAATTCAAGAACGATTACTGA 58.912 34.615 14.20 0.00 34.85 3.41
1811 10820 7.278211 TCTTCGAATTCAAGAACGATTACTG 57.722 36.000 14.20 0.00 34.85 2.74
1813 10822 9.543018 AAAATCTTCGAATTCAAGAACGATTAC 57.457 29.630 18.12 0.00 33.57 1.89
1821 10830 9.801873 AACAAAGAAAAATCTTCGAATTCAAGA 57.198 25.926 17.13 17.13 34.37 3.02
1851 10860 9.280174 ACAATTAGGAATTCGTCTGAAAGTAAA 57.720 29.630 3.47 0.00 37.71 2.01
1852 10861 8.842358 ACAATTAGGAATTCGTCTGAAAGTAA 57.158 30.769 3.47 0.00 37.71 2.24
1853 10862 8.842358 AACAATTAGGAATTCGTCTGAAAGTA 57.158 30.769 3.47 0.00 37.71 2.24
1854 10863 7.745620 AACAATTAGGAATTCGTCTGAAAGT 57.254 32.000 3.47 0.00 37.71 2.66
1855 10864 8.289618 TCAAACAATTAGGAATTCGTCTGAAAG 58.710 33.333 3.47 0.00 37.71 2.62
1856 10865 8.160521 TCAAACAATTAGGAATTCGTCTGAAA 57.839 30.769 3.47 0.00 37.71 2.69
1857 10866 7.737972 TCAAACAATTAGGAATTCGTCTGAA 57.262 32.000 3.47 0.00 38.76 3.02
1858 10867 7.737972 TTCAAACAATTAGGAATTCGTCTGA 57.262 32.000 3.47 0.00 0.00 3.27
1859 10868 8.853345 CAATTCAAACAATTAGGAATTCGTCTG 58.147 33.333 3.47 3.96 37.75 3.51
1862 10871 8.141268 ACACAATTCAAACAATTAGGAATTCGT 58.859 29.630 5.87 5.87 37.75 3.85
1863 10872 8.519492 ACACAATTCAAACAATTAGGAATTCG 57.481 30.769 0.00 0.00 37.75 3.34
1869 10878 9.573133 GGAGATTACACAATTCAAACAATTAGG 57.427 33.333 0.00 0.00 0.00 2.69
1870 10879 9.573133 GGGAGATTACACAATTCAAACAATTAG 57.427 33.333 0.00 0.00 0.00 1.73
1871 10880 9.083422 TGGGAGATTACACAATTCAAACAATTA 57.917 29.630 0.00 0.00 0.00 1.40
1875 10884 7.537596 AATGGGAGATTACACAATTCAAACA 57.462 32.000 0.00 0.00 0.00 2.83
1876 10885 8.519526 TGTAATGGGAGATTACACAATTCAAAC 58.480 33.333 0.00 0.00 38.95 2.93
1877 10886 8.642935 TGTAATGGGAGATTACACAATTCAAA 57.357 30.769 0.00 0.00 38.95 2.69
1878 10887 8.642935 TTGTAATGGGAGATTACACAATTCAA 57.357 30.769 6.73 0.00 42.21 2.69
1879 10888 8.642935 TTTGTAATGGGAGATTACACAATTCA 57.357 30.769 6.73 0.00 42.21 2.57
1880 10889 9.921637 TTTTTGTAATGGGAGATTACACAATTC 57.078 29.630 6.73 0.00 42.21 2.17
1937 10987 3.490933 CGATCGCAAACCCTTCAGATAGA 60.491 47.826 0.26 0.00 0.00 1.98
1940 10990 1.066143 ACGATCGCAAACCCTTCAGAT 60.066 47.619 16.60 0.00 0.00 2.90
1942 10992 1.135972 CAACGATCGCAAACCCTTCAG 60.136 52.381 16.60 0.00 0.00 3.02
1944 10994 0.872388 ACAACGATCGCAAACCCTTC 59.128 50.000 16.60 0.00 0.00 3.46
1946 10996 1.234615 CCACAACGATCGCAAACCCT 61.235 55.000 16.60 0.00 0.00 4.34
1947 10997 1.209127 CCACAACGATCGCAAACCC 59.791 57.895 16.60 0.00 0.00 4.11
1948 10998 0.589223 TTCCACAACGATCGCAAACC 59.411 50.000 16.60 0.00 0.00 3.27
1949 10999 2.392933 TTTCCACAACGATCGCAAAC 57.607 45.000 16.60 0.00 0.00 2.93
1950 11000 2.095466 GGATTTCCACAACGATCGCAAA 60.095 45.455 16.60 5.33 35.64 3.68
1953 11003 0.377203 GGGATTTCCACAACGATCGC 59.623 55.000 16.60 0.00 37.91 4.58
1954 11004 1.732941 TGGGATTTCCACAACGATCG 58.267 50.000 14.88 14.88 41.46 3.69
1964 11014 2.135933 CGTAGCGAGAATGGGATTTCC 58.864 52.381 0.00 0.00 0.00 3.13
1965 11015 2.135933 CCGTAGCGAGAATGGGATTTC 58.864 52.381 0.00 0.00 0.00 2.17
1966 11016 1.202651 CCCGTAGCGAGAATGGGATTT 60.203 52.381 3.86 0.00 44.84 2.17
1967 11017 0.393077 CCCGTAGCGAGAATGGGATT 59.607 55.000 3.86 0.00 44.84 3.01
1968 11018 0.469331 TCCCGTAGCGAGAATGGGAT 60.469 55.000 7.72 0.00 45.49 3.85
1969 11019 3.533720 CCCGTAGCGAGAATGGGA 58.466 61.111 3.86 0.00 44.84 4.37
1970 11020 0.393077 ATTCCCGTAGCGAGAATGGG 59.607 55.000 0.00 3.58 43.60 4.00
1971 11021 2.240493 AATTCCCGTAGCGAGAATGG 57.760 50.000 0.00 0.00 30.80 3.16
1972 11022 5.924475 AAATAATTCCCGTAGCGAGAATG 57.076 39.130 0.00 0.00 30.80 2.67
1973 11023 5.820947 ACAAAATAATTCCCGTAGCGAGAAT 59.179 36.000 0.00 0.00 0.00 2.40
1975 11025 4.761975 ACAAAATAATTCCCGTAGCGAGA 58.238 39.130 0.00 0.00 0.00 4.04
1976 11026 4.025145 GGACAAAATAATTCCCGTAGCGAG 60.025 45.833 0.00 0.00 0.00 5.03
1977 11027 3.872771 GGACAAAATAATTCCCGTAGCGA 59.127 43.478 0.00 0.00 0.00 4.93
1978 11028 3.302870 CGGACAAAATAATTCCCGTAGCG 60.303 47.826 0.00 0.00 33.02 4.26
1979 11029 3.872771 TCGGACAAAATAATTCCCGTAGC 59.127 43.478 0.00 0.00 38.25 3.58
1980 11030 6.314400 TCTTTCGGACAAAATAATTCCCGTAG 59.686 38.462 0.00 0.00 38.25 3.51
1981 11031 6.171921 TCTTTCGGACAAAATAATTCCCGTA 58.828 36.000 0.00 0.00 38.25 4.02
1982 11032 5.005094 TCTTTCGGACAAAATAATTCCCGT 58.995 37.500 0.00 0.00 38.25 5.28
1983 11033 5.554822 TCTTTCGGACAAAATAATTCCCG 57.445 39.130 0.00 0.00 38.41 5.14
1984 11034 8.596271 TTTTTCTTTCGGACAAAATAATTCCC 57.404 30.769 0.00 0.00 0.00 3.97
1985 11035 9.471084 TCTTTTTCTTTCGGACAAAATAATTCC 57.529 29.630 0.00 0.00 0.00 3.01
1991 11082 9.256477 GGTATTTCTTTTTCTTTCGGACAAAAT 57.744 29.630 0.00 0.00 0.00 1.82
1993 11084 7.773149 TGGTATTTCTTTTTCTTTCGGACAAA 58.227 30.769 0.00 0.00 0.00 2.83
1994 11085 7.336161 TGGTATTTCTTTTTCTTTCGGACAA 57.664 32.000 0.00 0.00 0.00 3.18
1996 11087 7.919091 ACTTTGGTATTTCTTTTTCTTTCGGAC 59.081 33.333 0.00 0.00 0.00 4.79
2014 11105 6.708949 AGAGCGTAAATTCTGAAACTTTGGTA 59.291 34.615 0.00 0.00 0.00 3.25
2016 11107 6.002062 AGAGCGTAAATTCTGAAACTTTGG 57.998 37.500 0.00 0.00 0.00 3.28
2017 11108 9.267096 GAATAGAGCGTAAATTCTGAAACTTTG 57.733 33.333 0.00 0.00 0.00 2.77
2019 11110 7.331193 ACGAATAGAGCGTAAATTCTGAAACTT 59.669 33.333 0.00 0.00 40.65 2.66
2021 11112 6.990546 ACGAATAGAGCGTAAATTCTGAAAC 58.009 36.000 0.00 0.00 40.65 2.78
2022 11113 7.591006 AACGAATAGAGCGTAAATTCTGAAA 57.409 32.000 0.00 0.00 41.75 2.69
2023 11114 7.972277 AGTAACGAATAGAGCGTAAATTCTGAA 59.028 33.333 0.00 0.00 41.75 3.02
2024 11115 7.478322 AGTAACGAATAGAGCGTAAATTCTGA 58.522 34.615 0.00 0.00 41.75 3.27
2025 11116 7.681125 AGTAACGAATAGAGCGTAAATTCTG 57.319 36.000 0.00 0.00 41.75 3.02
2026 11117 9.962783 ATTAGTAACGAATAGAGCGTAAATTCT 57.037 29.630 0.00 0.00 41.75 2.40
2162 12318 3.250744 CTGAGTGAAAAAGATACCGCGA 58.749 45.455 8.23 0.00 0.00 5.87
2163 12319 2.348666 CCTGAGTGAAAAAGATACCGCG 59.651 50.000 0.00 0.00 0.00 6.46
2164 12320 3.371285 GTCCTGAGTGAAAAAGATACCGC 59.629 47.826 0.00 0.00 0.00 5.68
2165 12321 4.627467 CAGTCCTGAGTGAAAAAGATACCG 59.373 45.833 0.00 0.00 33.67 4.02
2166 12322 4.938226 CCAGTCCTGAGTGAAAAAGATACC 59.062 45.833 3.54 0.00 33.67 2.73
2167 12323 4.938226 CCCAGTCCTGAGTGAAAAAGATAC 59.062 45.833 3.54 0.00 33.67 2.24
2168 12324 4.597507 ACCCAGTCCTGAGTGAAAAAGATA 59.402 41.667 3.54 0.00 33.67 1.98
2169 12325 3.395941 ACCCAGTCCTGAGTGAAAAAGAT 59.604 43.478 3.54 0.00 33.67 2.40
2170 12326 2.777692 ACCCAGTCCTGAGTGAAAAAGA 59.222 45.455 3.54 0.00 33.67 2.52
2171 12327 3.214696 ACCCAGTCCTGAGTGAAAAAG 57.785 47.619 3.54 0.00 33.67 2.27
2172 12328 4.263331 GGATACCCAGTCCTGAGTGAAAAA 60.263 45.833 3.54 0.00 33.67 1.94
2173 12329 3.263425 GGATACCCAGTCCTGAGTGAAAA 59.737 47.826 3.54 0.00 33.67 2.29
2174 12330 2.838202 GGATACCCAGTCCTGAGTGAAA 59.162 50.000 3.54 0.00 33.67 2.69
2175 12331 2.225522 TGGATACCCAGTCCTGAGTGAA 60.226 50.000 3.54 0.00 37.58 3.18
2176 12332 1.361197 TGGATACCCAGTCCTGAGTGA 59.639 52.381 3.54 0.00 37.58 3.41
2177 12333 1.866015 TGGATACCCAGTCCTGAGTG 58.134 55.000 0.00 0.00 37.58 3.51
2188 12344 3.100545 CACCTGTGCATGGATACCC 57.899 57.895 14.47 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.