Multiple sequence alignment - TraesCS7D01G255100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G255100 chr7D 100.000 2645 0 0 1 2645 231565132 231562488 0.000000e+00 4885.0
1 TraesCS7D01G255100 chr7D 99.449 363 2 0 1646 2008 231575602 231575964 0.000000e+00 660.0
2 TraesCS7D01G255100 chr7D 99.495 198 1 0 1 198 231594827 231595024 6.960000e-96 361.0
3 TraesCS7D01G255100 chr7B 99.020 816 8 0 831 1646 662727431 662728246 0.000000e+00 1463.0
4 TraesCS7D01G255100 chr5D 99.020 816 8 0 831 1646 503263749 503262934 0.000000e+00 1463.0
5 TraesCS7D01G255100 chr5D 98.897 816 9 0 831 1646 503246299 503247114 0.000000e+00 1458.0
6 TraesCS7D01G255100 chr5D 98.903 638 5 1 196 833 196431613 196430978 0.000000e+00 1138.0
7 TraesCS7D01G255100 chr5D 97.809 639 8 4 196 833 503253491 503252858 0.000000e+00 1098.0
8 TraesCS7D01G255100 chr5D 97.496 639 13 2 196 833 432406342 432406978 0.000000e+00 1088.0
9 TraesCS7D01G255100 chr5D 99.164 598 5 0 2008 2605 483802713 483803310 0.000000e+00 1077.0
10 TraesCS7D01G255100 chr5D 98.997 598 5 1 2008 2605 6219138 6219734 0.000000e+00 1070.0
11 TraesCS7D01G255100 chr5D 99.174 363 3 0 1646 2008 446177693 446178055 0.000000e+00 654.0
12 TraesCS7D01G255100 chr5D 99.495 198 1 0 1 198 6237063 6237260 6.960000e-96 361.0
13 TraesCS7D01G255100 chr5D 98.990 198 2 0 1 198 503329747 503329550 3.240000e-94 355.0
14 TraesCS7D01G255100 chr5D 91.228 57 3 2 2590 2645 6241269 6241214 2.820000e-10 76.8
15 TraesCS7D01G255100 chr5D 91.228 57 3 2 2590 2645 444306449 444306394 2.820000e-10 76.8
16 TraesCS7D01G255100 chr5D 91.228 57 3 2 2590 2645 503325525 503325580 2.820000e-10 76.8
17 TraesCS7D01G255100 chr6D 98.897 816 9 0 831 1646 389244795 389243980 0.000000e+00 1458.0
18 TraesCS7D01G255100 chr6D 99.174 363 3 0 1646 2008 168261065 168261427 0.000000e+00 654.0
19 TraesCS7D01G255100 chr2D 98.897 816 9 0 831 1646 272811219 272810404 0.000000e+00 1458.0
20 TraesCS7D01G255100 chr2D 99.164 598 5 0 2008 2605 643858404 643857807 0.000000e+00 1077.0
21 TraesCS7D01G255100 chr2D 97.993 598 7 1 2008 2605 359629836 359630428 0.000000e+00 1033.0
22 TraesCS7D01G255100 chr2D 97.659 598 7 2 2008 2605 628291453 628292043 0.000000e+00 1020.0
23 TraesCS7D01G255100 chr2D 98.990 198 2 0 1 198 33930871 33931068 3.240000e-94 355.0
24 TraesCS7D01G255100 chr2A 98.896 815 9 0 831 1645 726905428 726904614 0.000000e+00 1456.0
25 TraesCS7D01G255100 chr2A 91.803 61 3 2 2586 2645 588086701 588086760 1.690000e-12 84.2
26 TraesCS7D01G255100 chr3A 98.775 816 10 0 831 1646 66004106 66003291 0.000000e+00 1452.0
27 TraesCS7D01G255100 chr3A 99.449 363 2 0 1646 2008 66014226 66013864 0.000000e+00 660.0
28 TraesCS7D01G255100 chr3A 98.485 198 3 0 1 198 485801862 485801665 1.510000e-92 350.0
29 TraesCS7D01G255100 chr3A 92.982 57 2 2 2590 2645 524023203 524023258 6.070000e-12 82.4
30 TraesCS7D01G255100 chr3D 98.652 816 11 0 831 1646 589262499 589261684 0.000000e+00 1447.0
31 TraesCS7D01G255100 chr3D 99.216 638 3 1 196 833 158931579 158930944 0.000000e+00 1149.0
32 TraesCS7D01G255100 chr3D 98.746 638 5 1 196 833 589248922 589248288 0.000000e+00 1131.0
33 TraesCS7D01G255100 chr3D 98.592 639 4 3 196 833 158937693 158937059 0.000000e+00 1125.0
34 TraesCS7D01G255100 chr3D 91.228 57 3 2 2590 2645 24160185 24160240 2.820000e-10 76.8
35 TraesCS7D01G255100 chr1D 98.529 816 12 0 831 1646 459903690 459902875 0.000000e+00 1441.0
36 TraesCS7D01G255100 chr1D 98.495 598 8 1 2008 2605 254482040 254481444 0.000000e+00 1053.0
37 TraesCS7D01G255100 chr1D 99.495 198 1 0 1 198 290506004 290505807 6.960000e-96 361.0
38 TraesCS7D01G255100 chrUn 98.746 638 5 1 196 833 371791124 371790490 0.000000e+00 1131.0
39 TraesCS7D01G255100 chrUn 99.449 363 2 0 1646 2008 441244224 441244586 0.000000e+00 660.0
40 TraesCS7D01G255100 chrUn 91.228 57 3 2 2590 2645 423003966 423004021 2.820000e-10 76.8
41 TraesCS7D01G255100 chr3B 97.969 640 9 3 196 833 201554711 201555348 0.000000e+00 1107.0
42 TraesCS7D01G255100 chr3B 96.823 598 12 2 2008 2605 201498058 201497468 0.000000e+00 992.0
43 TraesCS7D01G255100 chr3B 99.449 363 2 0 1646 2008 101914575 101914937 0.000000e+00 660.0
44 TraesCS7D01G255100 chr3B 99.449 363 2 0 1646 2008 201530423 201530785 0.000000e+00 660.0
45 TraesCS7D01G255100 chr3B 99.495 198 1 0 1 198 201491839 201491642 6.960000e-96 361.0
46 TraesCS7D01G255100 chr5A 97.809 639 10 2 196 833 482023302 482023937 0.000000e+00 1099.0
47 TraesCS7D01G255100 chr5A 99.174 363 3 0 1646 2008 510137097 510136735 0.000000e+00 654.0
48 TraesCS7D01G255100 chr1A 97.157 598 10 2 2008 2605 554473535 554474125 0.000000e+00 1003.0
49 TraesCS7D01G255100 chr1A 99.174 363 3 0 1646 2008 554515647 554516009 0.000000e+00 654.0
50 TraesCS7D01G255100 chr1A 99.495 198 1 0 1 198 554449109 554449306 6.960000e-96 361.0
51 TraesCS7D01G255100 chr1A 91.228 57 3 2 2590 2645 554453716 554453661 2.820000e-10 76.8
52 TraesCS7D01G255100 chr2B 96.990 598 11 2 2008 2605 474939907 474939317 0.000000e+00 998.0
53 TraesCS7D01G255100 chr2B 98.990 198 2 0 1 198 474906693 474906496 3.240000e-94 355.0
54 TraesCS7D01G255100 chr4D 91.228 57 3 2 2590 2645 133741341 133741396 2.820000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G255100 chr7D 231562488 231565132 2644 True 4885 4885 100.000 1 2645 1 chr7D.!!$R1 2644
1 TraesCS7D01G255100 chr7B 662727431 662728246 815 False 1463 1463 99.020 831 1646 1 chr7B.!!$F1 815
2 TraesCS7D01G255100 chr5D 503262934 503263749 815 True 1463 1463 99.020 831 1646 1 chr5D.!!$R5 815
3 TraesCS7D01G255100 chr5D 503246299 503247114 815 False 1458 1458 98.897 831 1646 1 chr5D.!!$F6 815
4 TraesCS7D01G255100 chr5D 196430978 196431613 635 True 1138 1138 98.903 196 833 1 chr5D.!!$R2 637
5 TraesCS7D01G255100 chr5D 503252858 503253491 633 True 1098 1098 97.809 196 833 1 chr5D.!!$R4 637
6 TraesCS7D01G255100 chr5D 432406342 432406978 636 False 1088 1088 97.496 196 833 1 chr5D.!!$F3 637
7 TraesCS7D01G255100 chr5D 483802713 483803310 597 False 1077 1077 99.164 2008 2605 1 chr5D.!!$F5 597
8 TraesCS7D01G255100 chr5D 6219138 6219734 596 False 1070 1070 98.997 2008 2605 1 chr5D.!!$F1 597
9 TraesCS7D01G255100 chr6D 389243980 389244795 815 True 1458 1458 98.897 831 1646 1 chr6D.!!$R1 815
10 TraesCS7D01G255100 chr2D 272810404 272811219 815 True 1458 1458 98.897 831 1646 1 chr2D.!!$R1 815
11 TraesCS7D01G255100 chr2D 643857807 643858404 597 True 1077 1077 99.164 2008 2605 1 chr2D.!!$R2 597
12 TraesCS7D01G255100 chr2D 359629836 359630428 592 False 1033 1033 97.993 2008 2605 1 chr2D.!!$F2 597
13 TraesCS7D01G255100 chr2D 628291453 628292043 590 False 1020 1020 97.659 2008 2605 1 chr2D.!!$F3 597
14 TraesCS7D01G255100 chr2A 726904614 726905428 814 True 1456 1456 98.896 831 1645 1 chr2A.!!$R1 814
15 TraesCS7D01G255100 chr3A 66003291 66004106 815 True 1452 1452 98.775 831 1646 1 chr3A.!!$R1 815
16 TraesCS7D01G255100 chr3D 589261684 589262499 815 True 1447 1447 98.652 831 1646 1 chr3D.!!$R4 815
17 TraesCS7D01G255100 chr3D 158930944 158931579 635 True 1149 1149 99.216 196 833 1 chr3D.!!$R1 637
18 TraesCS7D01G255100 chr3D 589248288 589248922 634 True 1131 1131 98.746 196 833 1 chr3D.!!$R3 637
19 TraesCS7D01G255100 chr3D 158937059 158937693 634 True 1125 1125 98.592 196 833 1 chr3D.!!$R2 637
20 TraesCS7D01G255100 chr1D 459902875 459903690 815 True 1441 1441 98.529 831 1646 1 chr1D.!!$R3 815
21 TraesCS7D01G255100 chr1D 254481444 254482040 596 True 1053 1053 98.495 2008 2605 1 chr1D.!!$R1 597
22 TraesCS7D01G255100 chrUn 371790490 371791124 634 True 1131 1131 98.746 196 833 1 chrUn.!!$R1 637
23 TraesCS7D01G255100 chr3B 201554711 201555348 637 False 1107 1107 97.969 196 833 1 chr3B.!!$F3 637
24 TraesCS7D01G255100 chr3B 201497468 201498058 590 True 992 992 96.823 2008 2605 1 chr3B.!!$R2 597
25 TraesCS7D01G255100 chr5A 482023302 482023937 635 False 1099 1099 97.809 196 833 1 chr5A.!!$F1 637
26 TraesCS7D01G255100 chr1A 554473535 554474125 590 False 1003 1003 97.157 2008 2605 1 chr1A.!!$F2 597
27 TraesCS7D01G255100 chr2B 474939317 474939907 590 True 998 998 96.990 2008 2605 1 chr2B.!!$R2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.035439 GGGCTTTGATCACCGAGGAA 60.035 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2001 0.036858 GGACTTGTCTGACTCAGGCC 60.037 60.0 14.36 14.36 34.88 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.683974 CTAATTGGGTAGTCAAACATGAGG 57.316 41.667 0.00 0.00 0.00 3.86
24 25 4.657814 ATTGGGTAGTCAAACATGAGGT 57.342 40.909 0.00 0.00 0.00 3.85
25 26 3.417069 TGGGTAGTCAAACATGAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
26 27 2.039746 TGGGTAGTCAAACATGAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
27 28 2.039879 GGGTAGTCAAACATGAGGTGGT 59.960 50.000 0.00 0.00 0.00 4.16
28 29 3.497942 GGGTAGTCAAACATGAGGTGGTT 60.498 47.826 0.00 0.00 38.61 3.67
29 30 3.751698 GGTAGTCAAACATGAGGTGGTTC 59.248 47.826 0.00 0.00 34.89 3.62
30 31 3.576078 AGTCAAACATGAGGTGGTTCA 57.424 42.857 0.00 0.00 34.89 3.18
31 32 4.104383 AGTCAAACATGAGGTGGTTCAT 57.896 40.909 0.00 0.00 34.89 2.57
32 33 5.241403 AGTCAAACATGAGGTGGTTCATA 57.759 39.130 0.00 0.00 34.89 2.15
33 34 5.248640 AGTCAAACATGAGGTGGTTCATAG 58.751 41.667 0.00 0.00 34.89 2.23
34 35 5.013079 AGTCAAACATGAGGTGGTTCATAGA 59.987 40.000 0.00 0.00 34.89 1.98
35 36 5.882557 GTCAAACATGAGGTGGTTCATAGAT 59.117 40.000 0.00 0.00 34.89 1.98
36 37 6.037610 GTCAAACATGAGGTGGTTCATAGATC 59.962 42.308 0.00 0.00 34.89 2.75
37 38 5.965033 AACATGAGGTGGTTCATAGATCT 57.035 39.130 0.00 0.00 36.08 2.75
38 39 5.965033 ACATGAGGTGGTTCATAGATCTT 57.035 39.130 0.00 0.00 36.08 2.40
39 40 6.319048 ACATGAGGTGGTTCATAGATCTTT 57.681 37.500 0.00 0.00 36.08 2.52
40 41 6.118170 ACATGAGGTGGTTCATAGATCTTTG 58.882 40.000 0.00 3.19 36.08 2.77
41 42 5.102953 TGAGGTGGTTCATAGATCTTTGG 57.897 43.478 12.51 0.00 0.00 3.28
42 43 4.080356 TGAGGTGGTTCATAGATCTTTGGG 60.080 45.833 12.51 0.00 0.00 4.12
43 44 2.952310 GGTGGTTCATAGATCTTTGGGC 59.048 50.000 12.51 6.40 0.00 5.36
44 45 3.372025 GGTGGTTCATAGATCTTTGGGCT 60.372 47.826 12.51 0.00 0.00 5.19
45 46 4.273318 GTGGTTCATAGATCTTTGGGCTT 58.727 43.478 12.51 0.00 0.00 4.35
46 47 4.706962 GTGGTTCATAGATCTTTGGGCTTT 59.293 41.667 12.51 0.00 0.00 3.51
47 48 4.706476 TGGTTCATAGATCTTTGGGCTTTG 59.294 41.667 12.51 0.00 0.00 2.77
48 49 4.949856 GGTTCATAGATCTTTGGGCTTTGA 59.050 41.667 12.51 0.00 0.00 2.69
49 50 5.595952 GGTTCATAGATCTTTGGGCTTTGAT 59.404 40.000 12.51 0.00 0.00 2.57
50 51 6.238869 GGTTCATAGATCTTTGGGCTTTGATC 60.239 42.308 12.51 0.00 36.51 2.92
51 52 6.005066 TCATAGATCTTTGGGCTTTGATCA 57.995 37.500 12.51 0.00 38.13 2.92
52 53 5.824624 TCATAGATCTTTGGGCTTTGATCAC 59.175 40.000 12.51 0.00 38.13 3.06
53 54 3.359950 AGATCTTTGGGCTTTGATCACC 58.640 45.455 0.00 0.00 38.13 4.02
54 55 1.533625 TCTTTGGGCTTTGATCACCG 58.466 50.000 0.00 0.00 0.00 4.94
55 56 1.073125 TCTTTGGGCTTTGATCACCGA 59.927 47.619 0.00 0.00 0.00 4.69
56 57 1.470098 CTTTGGGCTTTGATCACCGAG 59.530 52.381 0.00 0.00 0.00 4.63
57 58 0.322456 TTGGGCTTTGATCACCGAGG 60.322 55.000 0.00 0.00 0.00 4.63
58 59 1.198094 TGGGCTTTGATCACCGAGGA 61.198 55.000 0.00 0.00 0.00 3.71
59 60 0.035439 GGGCTTTGATCACCGAGGAA 60.035 55.000 0.00 0.00 0.00 3.36
60 61 1.408822 GGGCTTTGATCACCGAGGAAT 60.409 52.381 0.00 0.00 0.00 3.01
61 62 2.158813 GGGCTTTGATCACCGAGGAATA 60.159 50.000 0.00 0.00 0.00 1.75
62 63 3.134458 GGCTTTGATCACCGAGGAATAG 58.866 50.000 0.00 0.00 0.00 1.73
63 64 3.181465 GGCTTTGATCACCGAGGAATAGA 60.181 47.826 0.00 0.00 0.00 1.98
64 65 4.054671 GCTTTGATCACCGAGGAATAGAG 58.945 47.826 0.00 0.00 0.00 2.43
65 66 4.202161 GCTTTGATCACCGAGGAATAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
66 67 4.920640 TTGATCACCGAGGAATAGAGAC 57.079 45.455 0.00 0.00 0.00 3.36
67 68 4.171878 TGATCACCGAGGAATAGAGACT 57.828 45.455 0.00 0.00 0.00 3.24
68 69 4.537751 TGATCACCGAGGAATAGAGACTT 58.462 43.478 0.00 0.00 0.00 3.01
69 70 4.956700 TGATCACCGAGGAATAGAGACTTT 59.043 41.667 0.00 0.00 0.00 2.66
70 71 6.127101 TGATCACCGAGGAATAGAGACTTTA 58.873 40.000 0.00 0.00 0.00 1.85
71 72 5.831702 TCACCGAGGAATAGAGACTTTAC 57.168 43.478 0.00 0.00 0.00 2.01
72 73 5.258841 TCACCGAGGAATAGAGACTTTACA 58.741 41.667 0.00 0.00 0.00 2.41
73 74 5.713389 TCACCGAGGAATAGAGACTTTACAA 59.287 40.000 0.00 0.00 0.00 2.41
74 75 6.209986 TCACCGAGGAATAGAGACTTTACAAA 59.790 38.462 0.00 0.00 0.00 2.83
75 76 7.042335 CACCGAGGAATAGAGACTTTACAAAT 58.958 38.462 0.00 0.00 0.00 2.32
76 77 8.195436 CACCGAGGAATAGAGACTTTACAAATA 58.805 37.037 0.00 0.00 0.00 1.40
77 78 8.755977 ACCGAGGAATAGAGACTTTACAAATAA 58.244 33.333 0.00 0.00 0.00 1.40
78 79 9.595823 CCGAGGAATAGAGACTTTACAAATAAA 57.404 33.333 0.00 0.00 0.00 1.40
85 86 7.454260 AGAGACTTTACAAATAAAAGCAGGG 57.546 36.000 0.00 0.00 37.44 4.45
86 87 6.434340 AGAGACTTTACAAATAAAAGCAGGGG 59.566 38.462 0.00 0.00 37.44 4.79
87 88 6.311735 AGACTTTACAAATAAAAGCAGGGGA 58.688 36.000 0.00 0.00 37.44 4.81
88 89 6.954102 AGACTTTACAAATAAAAGCAGGGGAT 59.046 34.615 0.00 0.00 37.44 3.85
89 90 7.454694 AGACTTTACAAATAAAAGCAGGGGATT 59.545 33.333 0.00 0.00 37.44 3.01
90 91 7.386059 ACTTTACAAATAAAAGCAGGGGATTG 58.614 34.615 0.00 0.00 37.44 2.67
91 92 4.824479 ACAAATAAAAGCAGGGGATTGG 57.176 40.909 0.00 0.00 0.00 3.16
92 93 3.519107 ACAAATAAAAGCAGGGGATTGGG 59.481 43.478 0.00 0.00 0.00 4.12
93 94 3.774216 CAAATAAAAGCAGGGGATTGGGA 59.226 43.478 0.00 0.00 0.00 4.37
94 95 3.999764 ATAAAAGCAGGGGATTGGGAT 57.000 42.857 0.00 0.00 0.00 3.85
95 96 2.647846 AAAAGCAGGGGATTGGGATT 57.352 45.000 0.00 0.00 0.00 3.01
96 97 2.165357 AAAGCAGGGGATTGGGATTC 57.835 50.000 0.00 0.00 0.00 2.52
97 98 0.262876 AAGCAGGGGATTGGGATTCC 59.737 55.000 0.00 0.00 0.00 3.01
98 99 0.925720 AGCAGGGGATTGGGATTCCA 60.926 55.000 4.80 0.00 42.25 3.53
99 100 0.189327 GCAGGGGATTGGGATTCCAT 59.811 55.000 4.80 0.00 43.63 3.41
100 101 1.413517 GCAGGGGATTGGGATTCCATT 60.414 52.381 4.80 0.00 43.63 3.16
101 102 2.322658 CAGGGGATTGGGATTCCATTG 58.677 52.381 4.80 0.00 43.63 2.82
102 103 1.051008 GGGGATTGGGATTCCATTGC 58.949 55.000 4.80 0.00 43.63 3.56
103 104 1.413517 GGGGATTGGGATTCCATTGCT 60.414 52.381 4.80 0.00 43.63 3.91
104 105 1.690352 GGGATTGGGATTCCATTGCTG 59.310 52.381 4.80 0.00 43.63 4.41
105 106 2.391678 GGATTGGGATTCCATTGCTGT 58.608 47.619 4.80 0.00 43.63 4.40
106 107 2.363359 GGATTGGGATTCCATTGCTGTC 59.637 50.000 4.80 0.00 43.63 3.51
107 108 2.601240 TTGGGATTCCATTGCTGTCA 57.399 45.000 4.80 0.00 43.63 3.58
108 109 2.832643 TGGGATTCCATTGCTGTCAT 57.167 45.000 4.80 0.00 38.32 3.06
109 110 3.104519 TGGGATTCCATTGCTGTCATT 57.895 42.857 4.80 0.00 38.32 2.57
110 111 3.443052 TGGGATTCCATTGCTGTCATTT 58.557 40.909 4.80 0.00 38.32 2.32
111 112 3.839490 TGGGATTCCATTGCTGTCATTTT 59.161 39.130 4.80 0.00 38.32 1.82
112 113 5.022122 TGGGATTCCATTGCTGTCATTTTA 58.978 37.500 4.80 0.00 38.32 1.52
113 114 5.662208 TGGGATTCCATTGCTGTCATTTTAT 59.338 36.000 4.80 0.00 38.32 1.40
114 115 6.838090 TGGGATTCCATTGCTGTCATTTTATA 59.162 34.615 4.80 0.00 38.32 0.98
115 116 7.510001 TGGGATTCCATTGCTGTCATTTTATAT 59.490 33.333 4.80 0.00 38.32 0.86
116 117 7.816031 GGGATTCCATTGCTGTCATTTTATATG 59.184 37.037 4.80 0.00 0.00 1.78
117 118 8.362639 GGATTCCATTGCTGTCATTTTATATGT 58.637 33.333 0.00 0.00 0.00 2.29
143 144 6.628919 ATGGTTACAATTATTTACGCTCCC 57.371 37.500 0.00 0.00 0.00 4.30
144 145 5.498393 TGGTTACAATTATTTACGCTCCCA 58.502 37.500 0.00 0.00 0.00 4.37
145 146 5.944599 TGGTTACAATTATTTACGCTCCCAA 59.055 36.000 0.00 0.00 0.00 4.12
146 147 6.603997 TGGTTACAATTATTTACGCTCCCAAT 59.396 34.615 0.00 0.00 0.00 3.16
147 148 6.915843 GGTTACAATTATTTACGCTCCCAATG 59.084 38.462 0.00 0.00 0.00 2.82
148 149 7.415877 GGTTACAATTATTTACGCTCCCAATGT 60.416 37.037 0.00 0.00 0.00 2.71
149 150 5.890334 ACAATTATTTACGCTCCCAATGTG 58.110 37.500 0.00 0.00 0.00 3.21
150 151 4.568152 ATTATTTACGCTCCCAATGTGC 57.432 40.909 0.00 0.00 0.00 4.57
151 152 2.128771 ATTTACGCTCCCAATGTGCT 57.871 45.000 0.00 0.00 0.00 4.40
152 153 1.904287 TTTACGCTCCCAATGTGCTT 58.096 45.000 0.00 0.00 0.00 3.91
153 154 2.772077 TTACGCTCCCAATGTGCTTA 57.228 45.000 0.00 0.00 0.00 3.09
154 155 3.275617 TTACGCTCCCAATGTGCTTAT 57.724 42.857 0.00 0.00 0.00 1.73
155 156 1.382522 ACGCTCCCAATGTGCTTATG 58.617 50.000 0.00 0.00 0.00 1.90
156 157 1.065491 ACGCTCCCAATGTGCTTATGA 60.065 47.619 0.00 0.00 0.00 2.15
157 158 2.224606 CGCTCCCAATGTGCTTATGAT 58.775 47.619 0.00 0.00 0.00 2.45
158 159 2.031420 CGCTCCCAATGTGCTTATGATG 60.031 50.000 0.00 0.00 0.00 3.07
159 160 2.954318 GCTCCCAATGTGCTTATGATGT 59.046 45.455 0.00 0.00 0.00 3.06
160 161 4.136796 GCTCCCAATGTGCTTATGATGTA 58.863 43.478 0.00 0.00 0.00 2.29
161 162 4.214971 GCTCCCAATGTGCTTATGATGTAG 59.785 45.833 0.00 0.00 0.00 2.74
162 163 4.136796 TCCCAATGTGCTTATGATGTAGC 58.863 43.478 0.00 0.00 37.89 3.58
163 164 3.884693 CCCAATGTGCTTATGATGTAGCA 59.115 43.478 0.00 0.00 44.58 3.49
167 168 2.238942 TGCTTATGATGTAGCACCCG 57.761 50.000 0.00 0.00 42.12 5.28
168 169 1.202639 TGCTTATGATGTAGCACCCGG 60.203 52.381 0.00 0.00 42.12 5.73
169 170 1.202651 GCTTATGATGTAGCACCCGGT 60.203 52.381 0.00 0.00 37.35 5.28
170 171 2.483876 CTTATGATGTAGCACCCGGTG 58.516 52.381 13.71 13.71 36.51 4.94
171 172 0.756294 TATGATGTAGCACCCGGTGG 59.244 55.000 19.41 1.32 33.64 4.61
172 173 0.980754 ATGATGTAGCACCCGGTGGA 60.981 55.000 19.41 0.00 33.64 4.02
173 174 0.980754 TGATGTAGCACCCGGTGGAT 60.981 55.000 19.41 1.56 33.64 3.41
174 175 0.249911 GATGTAGCACCCGGTGGATC 60.250 60.000 19.41 2.64 33.64 3.36
175 176 0.691078 ATGTAGCACCCGGTGGATCT 60.691 55.000 19.41 10.17 33.64 2.75
176 177 0.907704 TGTAGCACCCGGTGGATCTT 60.908 55.000 19.41 0.00 33.64 2.40
177 178 0.252197 GTAGCACCCGGTGGATCTTT 59.748 55.000 19.41 0.00 33.64 2.52
178 179 1.483415 GTAGCACCCGGTGGATCTTTA 59.517 52.381 19.41 0.00 33.64 1.85
179 180 0.541863 AGCACCCGGTGGATCTTTAG 59.458 55.000 19.41 0.00 33.64 1.85
180 181 1.095807 GCACCCGGTGGATCTTTAGC 61.096 60.000 19.41 0.00 33.64 3.09
181 182 0.541863 CACCCGGTGGATCTTTAGCT 59.458 55.000 9.99 0.00 34.81 3.32
182 183 1.760613 CACCCGGTGGATCTTTAGCTA 59.239 52.381 9.99 0.00 34.81 3.32
183 184 2.040178 ACCCGGTGGATCTTTAGCTAG 58.960 52.381 0.00 0.00 34.81 3.42
184 185 1.270358 CCCGGTGGATCTTTAGCTAGC 60.270 57.143 6.62 6.62 0.00 3.42
185 186 1.603172 CCGGTGGATCTTTAGCTAGCG 60.603 57.143 9.55 0.00 0.00 4.26
186 187 1.067212 CGGTGGATCTTTAGCTAGCGT 59.933 52.381 9.55 0.21 0.00 5.07
187 188 2.474816 GGTGGATCTTTAGCTAGCGTG 58.525 52.381 9.55 1.06 0.00 5.34
188 189 2.159085 GGTGGATCTTTAGCTAGCGTGT 60.159 50.000 9.55 0.00 0.00 4.49
189 190 3.067742 GGTGGATCTTTAGCTAGCGTGTA 59.932 47.826 9.55 0.00 0.00 2.90
190 191 4.262079 GGTGGATCTTTAGCTAGCGTGTAT 60.262 45.833 9.55 0.62 0.00 2.29
191 192 4.918583 GTGGATCTTTAGCTAGCGTGTATC 59.081 45.833 9.55 9.84 0.00 2.24
192 193 4.583073 TGGATCTTTAGCTAGCGTGTATCA 59.417 41.667 9.55 0.10 0.00 2.15
193 194 5.243954 TGGATCTTTAGCTAGCGTGTATCAT 59.756 40.000 9.55 0.00 0.00 2.45
194 195 5.802956 GGATCTTTAGCTAGCGTGTATCATC 59.197 44.000 9.55 6.36 0.00 2.92
682 690 1.079405 GGTTCGAATCCGAGTGGCA 60.079 57.895 0.00 0.00 46.39 4.92
699 707 3.985925 GTGGCAGCATTCTTGAAAAAGAG 59.014 43.478 0.00 0.00 0.00 2.85
1010 1018 2.512515 GTGGAGGATGTCAGCGGC 60.513 66.667 0.00 0.00 0.00 6.53
1149 1157 5.099042 TCCTTCCATTTAGTAGCACCTTC 57.901 43.478 0.00 0.00 0.00 3.46
1160 1168 0.767375 AGCACCTTCGGATGGCATAT 59.233 50.000 0.00 0.00 0.00 1.78
1177 1185 4.517453 GGCATATCCTTAACGTTAATGGCA 59.483 41.667 26.96 18.23 33.19 4.92
1302 1310 1.420138 TCCGGAGATTCCCAAATAGGC 59.580 52.381 0.00 0.00 35.39 3.93
1573 1581 0.249238 CTCTGACCCGAGTAGCATGC 60.249 60.000 10.51 10.51 0.00 4.06
1657 1665 2.815722 GATAGCGGATCGTTCAGGC 58.184 57.895 0.00 0.00 0.00 4.85
1658 1666 0.315568 GATAGCGGATCGTTCAGGCT 59.684 55.000 13.55 13.55 37.12 4.58
1659 1667 1.540267 GATAGCGGATCGTTCAGGCTA 59.460 52.381 16.12 16.12 38.77 3.93
1660 1668 1.617322 TAGCGGATCGTTCAGGCTAT 58.383 50.000 12.00 0.00 35.55 2.97
1661 1669 1.617322 AGCGGATCGTTCAGGCTATA 58.383 50.000 8.89 0.00 33.12 1.31
1662 1670 2.171840 AGCGGATCGTTCAGGCTATAT 58.828 47.619 8.89 0.00 33.12 0.86
1663 1671 3.353557 AGCGGATCGTTCAGGCTATATA 58.646 45.455 8.89 0.00 33.12 0.86
1664 1672 3.954904 AGCGGATCGTTCAGGCTATATAT 59.045 43.478 8.89 0.00 33.12 0.86
1665 1673 5.131067 AGCGGATCGTTCAGGCTATATATA 58.869 41.667 8.89 0.00 33.12 0.86
1666 1674 5.770663 AGCGGATCGTTCAGGCTATATATAT 59.229 40.000 8.89 0.00 33.12 0.86
1667 1675 6.265649 AGCGGATCGTTCAGGCTATATATATT 59.734 38.462 0.00 0.00 33.12 1.28
1668 1676 6.924060 GCGGATCGTTCAGGCTATATATATTT 59.076 38.462 0.00 0.00 0.00 1.40
1669 1677 8.080417 GCGGATCGTTCAGGCTATATATATTTA 58.920 37.037 0.00 0.00 0.00 1.40
1670 1678 9.613957 CGGATCGTTCAGGCTATATATATTTAG 57.386 37.037 0.00 5.98 0.00 1.85
1692 1700 9.569122 TTTAGTCTATTTTGGCTTTTACTGTCT 57.431 29.630 0.00 0.00 0.00 3.41
1694 1702 8.549338 AGTCTATTTTGGCTTTTACTGTCTAC 57.451 34.615 0.00 0.00 0.00 2.59
1695 1703 8.376270 AGTCTATTTTGGCTTTTACTGTCTACT 58.624 33.333 0.00 0.00 0.00 2.57
1696 1704 9.000486 GTCTATTTTGGCTTTTACTGTCTACTT 58.000 33.333 0.00 0.00 0.00 2.24
1697 1705 9.569122 TCTATTTTGGCTTTTACTGTCTACTTT 57.431 29.630 0.00 0.00 0.00 2.66
1700 1708 7.875327 TTTGGCTTTTACTGTCTACTTTTCT 57.125 32.000 0.00 0.00 0.00 2.52
1701 1709 7.492352 TTGGCTTTTACTGTCTACTTTTCTC 57.508 36.000 0.00 0.00 0.00 2.87
1702 1710 6.588204 TGGCTTTTACTGTCTACTTTTCTCA 58.412 36.000 0.00 0.00 0.00 3.27
1703 1711 6.706270 TGGCTTTTACTGTCTACTTTTCTCAG 59.294 38.462 0.00 0.00 0.00 3.35
1704 1712 6.147985 GGCTTTTACTGTCTACTTTTCTCAGG 59.852 42.308 0.00 0.00 0.00 3.86
1705 1713 6.147985 GCTTTTACTGTCTACTTTTCTCAGGG 59.852 42.308 0.00 0.00 0.00 4.45
1706 1714 6.989155 TTTACTGTCTACTTTTCTCAGGGA 57.011 37.500 0.00 0.00 0.00 4.20
1707 1715 6.591750 TTACTGTCTACTTTTCTCAGGGAG 57.408 41.667 0.00 0.00 0.00 4.30
1708 1716 4.742012 ACTGTCTACTTTTCTCAGGGAGA 58.258 43.478 0.00 0.00 36.86 3.71
1709 1717 5.337788 ACTGTCTACTTTTCTCAGGGAGAT 58.662 41.667 0.00 0.00 38.56 2.75
1710 1718 5.186797 ACTGTCTACTTTTCTCAGGGAGATG 59.813 44.000 0.00 0.00 38.56 2.90
1711 1719 4.467795 TGTCTACTTTTCTCAGGGAGATGG 59.532 45.833 0.00 0.00 38.56 3.51
1712 1720 4.468153 GTCTACTTTTCTCAGGGAGATGGT 59.532 45.833 0.00 0.44 38.56 3.55
1713 1721 5.046231 GTCTACTTTTCTCAGGGAGATGGTT 60.046 44.000 0.00 0.00 38.56 3.67
1714 1722 6.154706 GTCTACTTTTCTCAGGGAGATGGTTA 59.845 42.308 0.00 0.00 38.56 2.85
1715 1723 5.843019 ACTTTTCTCAGGGAGATGGTTAA 57.157 39.130 0.00 0.00 38.56 2.01
1716 1724 5.810095 ACTTTTCTCAGGGAGATGGTTAAG 58.190 41.667 0.00 0.00 38.56 1.85
1717 1725 4.844349 TTTCTCAGGGAGATGGTTAAGG 57.156 45.455 0.00 0.00 38.56 2.69
1718 1726 3.776731 TCTCAGGGAGATGGTTAAGGA 57.223 47.619 0.00 0.00 33.35 3.36
1719 1727 3.375699 TCTCAGGGAGATGGTTAAGGAC 58.624 50.000 0.00 0.00 33.35 3.85
1720 1728 3.886143 TCTCAGGGAGATGGTTAAGGACC 60.886 52.174 0.00 0.00 40.25 4.46
1721 1729 6.134089 TCTCAGGGAGATGGTTAAGGACCT 62.134 50.000 0.00 0.00 40.38 3.85
1722 1730 7.877755 TCTCAGGGAGATGGTTAAGGACCTC 62.878 52.000 0.00 0.00 40.38 3.85
1733 1741 6.399639 GGTTAAGGACCTCAGAAGATAGAG 57.600 45.833 0.00 0.00 45.55 2.43
1741 1749 2.226330 TCAGAAGATAGAGGAGAGCGC 58.774 52.381 0.00 0.00 0.00 5.92
1742 1750 1.269448 CAGAAGATAGAGGAGAGCGCC 59.731 57.143 2.29 0.00 0.00 6.53
1743 1751 1.133637 AGAAGATAGAGGAGAGCGCCA 60.134 52.381 2.29 0.00 0.00 5.69
1744 1752 1.269448 GAAGATAGAGGAGAGCGCCAG 59.731 57.143 2.29 0.00 0.00 4.85
1745 1753 0.539438 AGATAGAGGAGAGCGCCAGG 60.539 60.000 2.29 0.00 0.00 4.45
1746 1754 2.153547 GATAGAGGAGAGCGCCAGGC 62.154 65.000 2.29 0.00 44.05 4.85
1753 1761 4.496336 GAGCGCCAGGCCCAGATT 62.496 66.667 5.63 0.00 45.17 2.40
1754 1762 4.052518 AGCGCCAGGCCCAGATTT 62.053 61.111 5.63 0.00 45.17 2.17
1755 1763 3.521796 GCGCCAGGCCCAGATTTC 61.522 66.667 5.63 0.00 34.80 2.17
1756 1764 2.830370 CGCCAGGCCCAGATTTCC 60.830 66.667 5.63 0.00 0.00 3.13
1757 1765 2.830370 GCCAGGCCCAGATTTCCG 60.830 66.667 0.00 0.00 0.00 4.30
1758 1766 2.124151 CCAGGCCCAGATTTCCGG 60.124 66.667 0.00 0.00 0.00 5.14
1759 1767 2.679342 CCAGGCCCAGATTTCCGGA 61.679 63.158 0.00 0.00 0.00 5.14
1760 1768 1.302949 CAGGCCCAGATTTCCGGAA 59.697 57.895 14.35 14.35 0.00 4.30
1761 1769 0.106519 CAGGCCCAGATTTCCGGAAT 60.107 55.000 19.62 8.32 0.00 3.01
1762 1770 1.142870 CAGGCCCAGATTTCCGGAATA 59.857 52.381 19.62 9.59 0.00 1.75
1763 1771 1.143073 AGGCCCAGATTTCCGGAATAC 59.857 52.381 19.62 14.78 0.00 1.89
1764 1772 1.143073 GGCCCAGATTTCCGGAATACT 59.857 52.381 19.62 16.83 0.00 2.12
1765 1773 2.422945 GGCCCAGATTTCCGGAATACTT 60.423 50.000 19.62 3.30 0.00 2.24
1766 1774 2.879026 GCCCAGATTTCCGGAATACTTC 59.121 50.000 19.62 12.57 0.00 3.01
1767 1775 3.433740 GCCCAGATTTCCGGAATACTTCT 60.434 47.826 19.62 14.57 0.00 2.85
1768 1776 4.202326 GCCCAGATTTCCGGAATACTTCTA 60.202 45.833 19.62 0.42 0.00 2.10
1769 1777 5.298347 CCCAGATTTCCGGAATACTTCTAC 58.702 45.833 19.62 3.85 0.00 2.59
1770 1778 4.982916 CCAGATTTCCGGAATACTTCTACG 59.017 45.833 19.62 7.84 0.00 3.51
1771 1779 4.982916 CAGATTTCCGGAATACTTCTACGG 59.017 45.833 19.62 3.99 45.52 4.02
1772 1780 3.806625 TTTCCGGAATACTTCTACGGG 57.193 47.619 19.62 0.00 44.36 5.28
1773 1781 1.696063 TCCGGAATACTTCTACGGGG 58.304 55.000 0.00 0.00 44.36 5.73
1774 1782 1.215173 TCCGGAATACTTCTACGGGGA 59.785 52.381 0.00 0.00 44.36 4.81
1775 1783 2.034124 CCGGAATACTTCTACGGGGAA 58.966 52.381 0.00 0.00 40.79 3.97
1776 1784 2.631545 CCGGAATACTTCTACGGGGAAT 59.368 50.000 0.00 0.00 40.79 3.01
1777 1785 3.554337 CCGGAATACTTCTACGGGGAATG 60.554 52.174 0.00 0.00 40.79 2.67
1778 1786 3.400255 GGAATACTTCTACGGGGAATGC 58.600 50.000 0.00 0.00 0.00 3.56
1779 1787 3.071167 GGAATACTTCTACGGGGAATGCT 59.929 47.826 0.00 0.00 0.00 3.79
1780 1788 4.308265 GAATACTTCTACGGGGAATGCTC 58.692 47.826 0.00 0.00 0.00 4.26
1781 1789 1.568504 ACTTCTACGGGGAATGCTCA 58.431 50.000 0.00 0.00 0.00 4.26
1782 1790 2.119495 ACTTCTACGGGGAATGCTCAT 58.881 47.619 0.00 0.00 0.00 2.90
1783 1791 2.505819 ACTTCTACGGGGAATGCTCATT 59.494 45.455 0.00 0.00 0.00 2.57
1784 1792 2.620251 TCTACGGGGAATGCTCATTG 57.380 50.000 0.00 0.00 0.00 2.82
1785 1793 2.115427 TCTACGGGGAATGCTCATTGA 58.885 47.619 0.00 0.00 0.00 2.57
1786 1794 2.503765 TCTACGGGGAATGCTCATTGAA 59.496 45.455 0.00 0.00 0.00 2.69
1787 1795 2.442236 ACGGGGAATGCTCATTGAAT 57.558 45.000 0.00 0.00 0.00 2.57
1788 1796 2.026641 ACGGGGAATGCTCATTGAATG 58.973 47.619 0.00 0.00 0.00 2.67
1789 1797 2.300433 CGGGGAATGCTCATTGAATGA 58.700 47.619 7.73 7.73 37.76 2.57
1805 1813 9.749340 TCATTGAATGAGCATTCTCCATATTAT 57.251 29.630 20.24 3.35 45.55 1.28
1806 1814 9.788960 CATTGAATGAGCATTCTCCATATTATG 57.211 33.333 20.24 0.00 45.55 1.90
1807 1815 7.387119 TGAATGAGCATTCTCCATATTATGC 57.613 36.000 20.24 0.00 45.55 3.14
1808 1816 6.376299 TGAATGAGCATTCTCCATATTATGCC 59.624 38.462 20.24 0.00 45.55 4.40
1809 1817 5.509832 TGAGCATTCTCCATATTATGCCT 57.490 39.130 0.00 0.00 43.30 4.75
1810 1818 5.884322 TGAGCATTCTCCATATTATGCCTT 58.116 37.500 0.00 0.00 43.30 4.35
1811 1819 5.708697 TGAGCATTCTCCATATTATGCCTTG 59.291 40.000 0.00 0.00 43.30 3.61
1812 1820 5.884322 AGCATTCTCCATATTATGCCTTGA 58.116 37.500 0.00 0.00 43.30 3.02
1813 1821 6.309357 AGCATTCTCCATATTATGCCTTGAA 58.691 36.000 0.00 1.21 43.30 2.69
1814 1822 6.433404 AGCATTCTCCATATTATGCCTTGAAG 59.567 38.462 0.00 0.00 43.30 3.02
1815 1823 6.432162 GCATTCTCCATATTATGCCTTGAAGA 59.568 38.462 0.00 0.00 37.90 2.87
1816 1824 7.361885 GCATTCTCCATATTATGCCTTGAAGAG 60.362 40.741 0.00 0.00 37.90 2.85
1832 1840 1.507174 GAGGACTCGAACCTCCACG 59.493 63.158 20.92 0.00 45.64 4.94
1833 1841 2.126031 GGACTCGAACCTCCACGC 60.126 66.667 1.64 0.00 0.00 5.34
1834 1842 2.637383 GGACTCGAACCTCCACGCT 61.637 63.158 1.64 0.00 0.00 5.07
1835 1843 1.153997 GACTCGAACCTCCACGCTC 60.154 63.158 0.00 0.00 0.00 5.03
1836 1844 1.587933 GACTCGAACCTCCACGCTCT 61.588 60.000 0.00 0.00 0.00 4.09
1837 1845 1.179814 ACTCGAACCTCCACGCTCTT 61.180 55.000 0.00 0.00 0.00 2.85
1838 1846 0.456995 CTCGAACCTCCACGCTCTTC 60.457 60.000 0.00 0.00 0.00 2.87
1839 1847 1.176619 TCGAACCTCCACGCTCTTCA 61.177 55.000 0.00 0.00 0.00 3.02
1840 1848 0.734253 CGAACCTCCACGCTCTTCAG 60.734 60.000 0.00 0.00 0.00 3.02
1841 1849 1.004440 AACCTCCACGCTCTTCAGC 60.004 57.895 0.00 0.00 42.96 4.26
1852 1860 3.382015 GCTCTTCAGCACGAGATTTTC 57.618 47.619 0.00 0.00 46.06 2.29
1853 1861 2.738846 GCTCTTCAGCACGAGATTTTCA 59.261 45.455 0.00 0.00 46.06 2.69
1854 1862 3.181522 GCTCTTCAGCACGAGATTTTCAG 60.182 47.826 0.00 0.00 46.06 3.02
1855 1863 3.993081 CTCTTCAGCACGAGATTTTCAGT 59.007 43.478 0.00 0.00 0.00 3.41
1856 1864 3.990469 TCTTCAGCACGAGATTTTCAGTC 59.010 43.478 0.00 0.00 0.00 3.51
1857 1865 3.667497 TCAGCACGAGATTTTCAGTCT 57.333 42.857 0.00 0.00 0.00 3.24
1858 1866 3.579709 TCAGCACGAGATTTTCAGTCTC 58.420 45.455 0.00 0.00 38.95 3.36
1864 1872 2.329379 GAGATTTTCAGTCTCGCGTGT 58.671 47.619 5.77 0.00 33.48 4.49
1865 1873 2.329379 AGATTTTCAGTCTCGCGTGTC 58.671 47.619 5.77 0.73 0.00 3.67
1866 1874 2.029828 AGATTTTCAGTCTCGCGTGTCT 60.030 45.455 5.77 3.65 0.00 3.41
1867 1875 3.190744 AGATTTTCAGTCTCGCGTGTCTA 59.809 43.478 5.77 0.00 0.00 2.59
1868 1876 2.327081 TTTCAGTCTCGCGTGTCTAC 57.673 50.000 5.77 0.00 0.00 2.59
1869 1877 0.520404 TTCAGTCTCGCGTGTCTACC 59.480 55.000 5.77 0.00 0.00 3.18
1870 1878 0.604511 TCAGTCTCGCGTGTCTACCA 60.605 55.000 5.77 0.00 0.00 3.25
1871 1879 0.452184 CAGTCTCGCGTGTCTACCAT 59.548 55.000 5.77 0.00 0.00 3.55
1872 1880 1.135373 CAGTCTCGCGTGTCTACCATT 60.135 52.381 5.77 0.00 0.00 3.16
1873 1881 1.544691 AGTCTCGCGTGTCTACCATTT 59.455 47.619 5.77 0.00 0.00 2.32
1874 1882 1.918609 GTCTCGCGTGTCTACCATTTC 59.081 52.381 5.77 0.00 0.00 2.17
1875 1883 1.542472 TCTCGCGTGTCTACCATTTCA 59.458 47.619 5.77 0.00 0.00 2.69
1876 1884 1.654105 CTCGCGTGTCTACCATTTCAC 59.346 52.381 5.77 0.00 0.00 3.18
1877 1885 0.719465 CGCGTGTCTACCATTTCACC 59.281 55.000 0.00 0.00 0.00 4.02
1878 1886 1.803334 GCGTGTCTACCATTTCACCA 58.197 50.000 0.00 0.00 0.00 4.17
1879 1887 2.356135 GCGTGTCTACCATTTCACCAT 58.644 47.619 0.00 0.00 0.00 3.55
1880 1888 2.351726 GCGTGTCTACCATTTCACCATC 59.648 50.000 0.00 0.00 0.00 3.51
1881 1889 3.595173 CGTGTCTACCATTTCACCATCA 58.405 45.455 0.00 0.00 0.00 3.07
1882 1890 4.000325 CGTGTCTACCATTTCACCATCAA 59.000 43.478 0.00 0.00 0.00 2.57
1883 1891 4.093408 CGTGTCTACCATTTCACCATCAAG 59.907 45.833 0.00 0.00 0.00 3.02
1884 1892 4.396166 GTGTCTACCATTTCACCATCAAGG 59.604 45.833 0.00 0.00 45.67 3.61
1885 1893 3.378427 GTCTACCATTTCACCATCAAGGC 59.622 47.826 0.00 0.00 43.14 4.35
1886 1894 2.307496 ACCATTTCACCATCAAGGCA 57.693 45.000 0.00 0.00 43.14 4.75
1887 1895 2.823959 ACCATTTCACCATCAAGGCAT 58.176 42.857 0.00 0.00 43.14 4.40
1888 1896 2.762327 ACCATTTCACCATCAAGGCATC 59.238 45.455 0.00 0.00 43.14 3.91
1889 1897 3.028850 CCATTTCACCATCAAGGCATCT 58.971 45.455 0.00 0.00 43.14 2.90
1890 1898 3.449737 CCATTTCACCATCAAGGCATCTT 59.550 43.478 0.00 0.00 43.14 2.40
1902 1910 4.691860 AAGGCATCTTGAAAGTGAATCG 57.308 40.909 0.00 0.00 0.00 3.34
1903 1911 3.679389 AGGCATCTTGAAAGTGAATCGT 58.321 40.909 0.00 0.00 0.00 3.73
1904 1912 4.832248 AGGCATCTTGAAAGTGAATCGTA 58.168 39.130 0.00 0.00 0.00 3.43
1905 1913 5.431765 AGGCATCTTGAAAGTGAATCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1906 1914 5.882557 AGGCATCTTGAAAGTGAATCGTATT 59.117 36.000 0.00 0.00 0.00 1.89
1907 1915 6.037610 AGGCATCTTGAAAGTGAATCGTATTC 59.962 38.462 0.00 0.00 0.00 1.75
1908 1916 6.195165 GCATCTTGAAAGTGAATCGTATTCC 58.805 40.000 5.51 0.00 0.00 3.01
1909 1917 6.183360 GCATCTTGAAAGTGAATCGTATTCCA 60.183 38.462 5.51 0.00 0.00 3.53
1910 1918 7.467811 GCATCTTGAAAGTGAATCGTATTCCAT 60.468 37.037 5.51 0.00 0.00 3.41
1911 1919 7.307493 TCTTGAAAGTGAATCGTATTCCATG 57.693 36.000 5.51 0.00 0.00 3.66
1912 1920 7.102993 TCTTGAAAGTGAATCGTATTCCATGA 58.897 34.615 0.00 0.00 0.00 3.07
1913 1921 7.606073 TCTTGAAAGTGAATCGTATTCCATGAA 59.394 33.333 0.00 0.00 0.00 2.57
1914 1922 7.864108 TGAAAGTGAATCGTATTCCATGAAT 57.136 32.000 0.00 0.00 36.20 2.57
1915 1923 8.956533 TGAAAGTGAATCGTATTCCATGAATA 57.043 30.769 0.00 0.00 33.95 1.75
1916 1924 9.559732 TGAAAGTGAATCGTATTCCATGAATAT 57.440 29.630 0.00 0.00 36.96 1.28
1917 1925 9.817365 GAAAGTGAATCGTATTCCATGAATATG 57.183 33.333 8.95 8.95 40.73 1.78
1962 1970 6.575244 TGGAATATATGACAAAGGTGGAGT 57.425 37.500 0.00 0.00 0.00 3.85
1963 1971 6.591935 TGGAATATATGACAAAGGTGGAGTC 58.408 40.000 0.00 0.00 0.00 3.36
1964 1972 6.386927 TGGAATATATGACAAAGGTGGAGTCT 59.613 38.462 0.00 0.00 33.56 3.24
1965 1973 7.092444 TGGAATATATGACAAAGGTGGAGTCTT 60.092 37.037 0.00 0.00 33.56 3.01
1966 1974 7.227512 GGAATATATGACAAAGGTGGAGTCTTG 59.772 40.741 0.00 0.00 33.56 3.02
1967 1975 2.638480 TGACAAAGGTGGAGTCTTGG 57.362 50.000 0.00 0.00 33.56 3.61
1968 1976 2.123589 TGACAAAGGTGGAGTCTTGGA 58.876 47.619 0.00 0.00 33.56 3.53
1969 1977 2.104792 TGACAAAGGTGGAGTCTTGGAG 59.895 50.000 0.00 0.00 33.56 3.86
1970 1978 2.104963 GACAAAGGTGGAGTCTTGGAGT 59.895 50.000 0.00 0.00 0.00 3.85
1971 1979 3.314693 ACAAAGGTGGAGTCTTGGAGTA 58.685 45.455 0.00 0.00 0.00 2.59
1972 1980 3.910627 ACAAAGGTGGAGTCTTGGAGTAT 59.089 43.478 0.00 0.00 0.00 2.12
1973 1981 4.351111 ACAAAGGTGGAGTCTTGGAGTATT 59.649 41.667 0.00 0.00 0.00 1.89
1974 1982 5.163088 ACAAAGGTGGAGTCTTGGAGTATTT 60.163 40.000 0.00 0.00 0.00 1.40
1975 1983 4.828072 AGGTGGAGTCTTGGAGTATTTC 57.172 45.455 0.00 0.00 0.00 2.17
1976 1984 3.195825 AGGTGGAGTCTTGGAGTATTTCG 59.804 47.826 0.00 0.00 0.00 3.46
1977 1985 3.194968 GGTGGAGTCTTGGAGTATTTCGA 59.805 47.826 0.00 0.00 0.00 3.71
1978 1986 4.141914 GGTGGAGTCTTGGAGTATTTCGAT 60.142 45.833 0.00 0.00 0.00 3.59
1979 1987 5.044558 GTGGAGTCTTGGAGTATTTCGATC 58.955 45.833 0.00 0.00 0.00 3.69
1980 1988 4.202020 TGGAGTCTTGGAGTATTTCGATCG 60.202 45.833 9.36 9.36 0.00 3.69
1981 1989 4.036498 GGAGTCTTGGAGTATTTCGATCGA 59.964 45.833 15.15 15.15 0.00 3.59
1982 1990 5.278561 GGAGTCTTGGAGTATTTCGATCGAT 60.279 44.000 20.18 7.62 0.00 3.59
1983 1991 5.764131 AGTCTTGGAGTATTTCGATCGATC 58.236 41.667 20.18 15.68 0.00 3.69
1995 2003 2.988343 CGATCGATCGGTCATATAGGC 58.012 52.381 34.54 0.00 45.93 3.93
1996 2004 2.287069 CGATCGATCGGTCATATAGGCC 60.287 54.545 34.54 0.00 45.93 5.19
1997 2005 2.509166 TCGATCGGTCATATAGGCCT 57.491 50.000 16.41 11.78 40.99 5.19
1998 2006 2.092323 TCGATCGGTCATATAGGCCTG 58.908 52.381 17.99 0.00 40.99 4.85
1999 2007 2.092323 CGATCGGTCATATAGGCCTGA 58.908 52.381 17.99 2.96 40.99 3.86
2000 2008 2.098280 CGATCGGTCATATAGGCCTGAG 59.902 54.545 17.99 2.00 40.99 3.35
2001 2009 2.677542 TCGGTCATATAGGCCTGAGT 57.322 50.000 17.99 3.69 40.99 3.41
2002 2010 2.515854 TCGGTCATATAGGCCTGAGTC 58.484 52.381 17.99 0.55 40.99 3.36
2003 2011 2.158519 TCGGTCATATAGGCCTGAGTCA 60.159 50.000 17.99 0.00 40.99 3.41
2004 2012 2.230025 CGGTCATATAGGCCTGAGTCAG 59.770 54.545 17.99 13.56 40.99 3.51
2005 2013 3.501349 GGTCATATAGGCCTGAGTCAGA 58.499 50.000 22.09 1.33 39.61 3.27
2006 2014 3.257127 GGTCATATAGGCCTGAGTCAGAC 59.743 52.174 22.09 10.12 39.61 3.51
2605 2619 3.138304 TGAACTTTCCAACGGACTCATG 58.862 45.455 0.00 0.00 0.00 3.07
2606 2620 2.185004 ACTTTCCAACGGACTCATGG 57.815 50.000 0.00 0.00 35.49 3.66
2607 2621 1.697432 ACTTTCCAACGGACTCATGGA 59.303 47.619 0.00 0.00 41.36 3.41
2609 2623 2.178912 TTCCAACGGACTCATGGAAC 57.821 50.000 2.48 0.00 45.71 3.62
2610 2624 0.323629 TCCAACGGACTCATGGAACC 59.676 55.000 0.00 0.00 40.19 3.62
2611 2625 0.676782 CCAACGGACTCATGGAACCC 60.677 60.000 0.00 0.00 36.27 4.11
2612 2626 0.676782 CAACGGACTCATGGAACCCC 60.677 60.000 0.00 0.00 0.00 4.95
2613 2627 1.848886 AACGGACTCATGGAACCCCC 61.849 60.000 0.00 0.00 0.00 5.40
2614 2628 2.590092 GGACTCATGGAACCCCCG 59.410 66.667 0.00 0.00 37.93 5.73
2615 2629 1.993391 GGACTCATGGAACCCCCGA 60.993 63.158 0.00 0.00 37.93 5.14
2616 2630 1.522569 GACTCATGGAACCCCCGAG 59.477 63.158 0.00 0.00 37.15 4.63
2617 2631 1.229529 ACTCATGGAACCCCCGAGT 60.230 57.895 0.00 0.00 38.59 4.18
2618 2632 1.221840 CTCATGGAACCCCCGAGTG 59.778 63.158 0.00 0.00 37.93 3.51
2619 2633 2.257409 CTCATGGAACCCCCGAGTGG 62.257 65.000 0.00 0.00 37.93 4.00
2620 2634 2.204090 ATGGAACCCCCGAGTGGT 60.204 61.111 0.00 0.00 37.93 4.16
2622 2636 2.033602 GGAACCCCCGAGTGGTTG 59.966 66.667 7.77 0.00 45.93 3.77
2623 2637 2.671963 GAACCCCCGAGTGGTTGC 60.672 66.667 7.77 0.00 45.93 4.17
2624 2638 4.636435 AACCCCCGAGTGGTTGCG 62.636 66.667 2.92 0.00 44.30 4.85
2627 2641 4.636435 CCCCGAGTGGTTGCGGTT 62.636 66.667 0.00 0.00 45.85 4.44
2628 2642 3.353836 CCCGAGTGGTTGCGGTTG 61.354 66.667 0.00 0.00 45.85 3.77
2629 2643 2.590575 CCGAGTGGTTGCGGTTGT 60.591 61.111 0.00 0.00 42.49 3.32
2630 2644 1.301087 CCGAGTGGTTGCGGTTGTA 60.301 57.895 0.00 0.00 42.49 2.41
2631 2645 1.562575 CCGAGTGGTTGCGGTTGTAC 61.563 60.000 0.00 0.00 42.49 2.90
2632 2646 1.562575 CGAGTGGTTGCGGTTGTACC 61.563 60.000 0.00 0.00 34.05 3.34
2633 2647 0.250166 GAGTGGTTGCGGTTGTACCT 60.250 55.000 0.00 0.00 35.66 3.08
2634 2648 0.534203 AGTGGTTGCGGTTGTACCTG 60.534 55.000 0.00 0.00 35.66 4.00
2635 2649 0.816421 GTGGTTGCGGTTGTACCTGT 60.816 55.000 0.00 0.00 35.66 4.00
2636 2650 0.757512 TGGTTGCGGTTGTACCTGTA 59.242 50.000 0.00 0.00 35.66 2.74
2637 2651 1.150827 GGTTGCGGTTGTACCTGTAC 58.849 55.000 0.45 0.45 35.66 2.90
2638 2652 1.270465 GGTTGCGGTTGTACCTGTACT 60.270 52.381 8.75 0.00 35.66 2.73
2639 2653 1.796459 GTTGCGGTTGTACCTGTACTG 59.204 52.381 8.75 0.00 35.66 2.74
2640 2654 1.042229 TGCGGTTGTACCTGTACTGT 58.958 50.000 8.75 0.00 35.66 3.55
2641 2655 2.237643 TGCGGTTGTACCTGTACTGTA 58.762 47.619 8.75 0.00 35.66 2.74
2642 2656 2.229543 TGCGGTTGTACCTGTACTGTAG 59.770 50.000 8.75 0.65 35.66 2.74
2643 2657 2.416431 GCGGTTGTACCTGTACTGTAGG 60.416 54.545 8.75 0.00 41.22 3.18
2644 2658 3.084039 CGGTTGTACCTGTACTGTAGGA 58.916 50.000 4.80 0.00 38.71 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.094048 CACCTCATGTTTGACTACCCAATTAG 59.906 42.308 0.00 0.00 0.00 1.73
1 2 5.943416 CACCTCATGTTTGACTACCCAATTA 59.057 40.000 0.00 0.00 0.00 1.40
2 3 4.766891 CACCTCATGTTTGACTACCCAATT 59.233 41.667 0.00 0.00 0.00 2.32
3 4 4.335416 CACCTCATGTTTGACTACCCAAT 58.665 43.478 0.00 0.00 0.00 3.16
4 5 3.497763 CCACCTCATGTTTGACTACCCAA 60.498 47.826 0.00 0.00 0.00 4.12
5 6 2.039746 CCACCTCATGTTTGACTACCCA 59.960 50.000 0.00 0.00 0.00 4.51
6 7 2.039879 ACCACCTCATGTTTGACTACCC 59.960 50.000 0.00 0.00 0.00 3.69
7 8 3.418684 ACCACCTCATGTTTGACTACC 57.581 47.619 0.00 0.00 0.00 3.18
8 9 4.385825 TGAACCACCTCATGTTTGACTAC 58.614 43.478 0.00 0.00 0.00 2.73
9 10 4.698201 TGAACCACCTCATGTTTGACTA 57.302 40.909 0.00 0.00 0.00 2.59
10 11 3.576078 TGAACCACCTCATGTTTGACT 57.424 42.857 0.00 0.00 0.00 3.41
11 12 5.245531 TCTATGAACCACCTCATGTTTGAC 58.754 41.667 0.00 0.00 36.69 3.18
12 13 5.497464 TCTATGAACCACCTCATGTTTGA 57.503 39.130 0.00 0.00 36.69 2.69
13 14 6.118170 AGATCTATGAACCACCTCATGTTTG 58.882 40.000 0.00 0.00 36.69 2.93
14 15 6.319048 AGATCTATGAACCACCTCATGTTT 57.681 37.500 0.00 0.00 36.69 2.83
15 16 5.965033 AGATCTATGAACCACCTCATGTT 57.035 39.130 0.00 0.00 36.69 2.71
16 17 5.965033 AAGATCTATGAACCACCTCATGT 57.035 39.130 0.00 0.00 36.69 3.21
17 18 5.530171 CCAAAGATCTATGAACCACCTCATG 59.470 44.000 0.00 0.00 36.69 3.07
18 19 5.398353 CCCAAAGATCTATGAACCACCTCAT 60.398 44.000 0.00 0.00 39.41 2.90
19 20 4.080356 CCCAAAGATCTATGAACCACCTCA 60.080 45.833 0.00 0.00 0.00 3.86
20 21 4.455606 CCCAAAGATCTATGAACCACCTC 58.544 47.826 0.00 0.00 0.00 3.85
21 22 3.372025 GCCCAAAGATCTATGAACCACCT 60.372 47.826 0.00 0.00 0.00 4.00
22 23 2.952310 GCCCAAAGATCTATGAACCACC 59.048 50.000 0.00 0.00 0.00 4.61
23 24 3.891049 AGCCCAAAGATCTATGAACCAC 58.109 45.455 0.00 0.00 0.00 4.16
24 25 4.591321 AAGCCCAAAGATCTATGAACCA 57.409 40.909 0.00 0.00 0.00 3.67
25 26 4.949856 TCAAAGCCCAAAGATCTATGAACC 59.050 41.667 0.00 0.00 0.00 3.62
26 27 6.319658 TGATCAAAGCCCAAAGATCTATGAAC 59.680 38.462 0.00 0.00 38.13 3.18
27 28 6.319658 GTGATCAAAGCCCAAAGATCTATGAA 59.680 38.462 0.00 0.00 38.13 2.57
28 29 5.824624 GTGATCAAAGCCCAAAGATCTATGA 59.175 40.000 0.00 0.00 38.13 2.15
29 30 5.009410 GGTGATCAAAGCCCAAAGATCTATG 59.991 44.000 0.00 0.00 38.13 2.23
30 31 5.136105 GGTGATCAAAGCCCAAAGATCTAT 58.864 41.667 0.00 0.00 38.13 1.98
31 32 4.526970 GGTGATCAAAGCCCAAAGATCTA 58.473 43.478 0.00 0.00 38.13 1.98
32 33 3.359950 GGTGATCAAAGCCCAAAGATCT 58.640 45.455 0.00 0.00 38.13 2.75
33 34 2.098117 CGGTGATCAAAGCCCAAAGATC 59.902 50.000 0.00 0.00 37.86 2.75
34 35 2.094675 CGGTGATCAAAGCCCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
35 36 1.073125 TCGGTGATCAAAGCCCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
36 37 1.470098 CTCGGTGATCAAAGCCCAAAG 59.530 52.381 0.00 0.00 0.00 2.77
37 38 1.533625 CTCGGTGATCAAAGCCCAAA 58.466 50.000 0.00 0.00 0.00 3.28
38 39 0.322456 CCTCGGTGATCAAAGCCCAA 60.322 55.000 0.00 0.00 0.00 4.12
39 40 1.198094 TCCTCGGTGATCAAAGCCCA 61.198 55.000 0.00 0.00 0.00 5.36
40 41 0.035439 TTCCTCGGTGATCAAAGCCC 60.035 55.000 0.00 0.00 0.00 5.19
41 42 2.044123 ATTCCTCGGTGATCAAAGCC 57.956 50.000 0.00 0.00 0.00 4.35
42 43 4.054671 CTCTATTCCTCGGTGATCAAAGC 58.945 47.826 0.00 0.00 0.00 3.51
43 44 5.068460 AGTCTCTATTCCTCGGTGATCAAAG 59.932 44.000 0.00 0.00 0.00 2.77
44 45 4.956700 AGTCTCTATTCCTCGGTGATCAAA 59.043 41.667 0.00 0.00 0.00 2.69
45 46 4.537751 AGTCTCTATTCCTCGGTGATCAA 58.462 43.478 0.00 0.00 0.00 2.57
46 47 4.171878 AGTCTCTATTCCTCGGTGATCA 57.828 45.455 0.00 0.00 0.00 2.92
47 48 5.523438 AAAGTCTCTATTCCTCGGTGATC 57.477 43.478 0.00 0.00 0.00 2.92
48 49 5.892119 TGTAAAGTCTCTATTCCTCGGTGAT 59.108 40.000 0.00 0.00 0.00 3.06
49 50 5.258841 TGTAAAGTCTCTATTCCTCGGTGA 58.741 41.667 0.00 0.00 0.00 4.02
50 51 5.578005 TGTAAAGTCTCTATTCCTCGGTG 57.422 43.478 0.00 0.00 0.00 4.94
51 52 6.600882 TTTGTAAAGTCTCTATTCCTCGGT 57.399 37.500 0.00 0.00 0.00 4.69
52 53 9.595823 TTTATTTGTAAAGTCTCTATTCCTCGG 57.404 33.333 0.00 0.00 0.00 4.63
59 60 9.178758 CCCTGCTTTTATTTGTAAAGTCTCTAT 57.821 33.333 0.00 0.00 35.52 1.98
60 61 7.610305 CCCCTGCTTTTATTTGTAAAGTCTCTA 59.390 37.037 0.00 0.00 35.52 2.43
61 62 6.434340 CCCCTGCTTTTATTTGTAAAGTCTCT 59.566 38.462 0.00 0.00 35.52 3.10
62 63 6.433093 TCCCCTGCTTTTATTTGTAAAGTCTC 59.567 38.462 0.00 0.00 35.52 3.36
63 64 6.311735 TCCCCTGCTTTTATTTGTAAAGTCT 58.688 36.000 0.00 0.00 35.52 3.24
64 65 6.584185 TCCCCTGCTTTTATTTGTAAAGTC 57.416 37.500 0.00 0.00 35.52 3.01
65 66 7.386059 CAATCCCCTGCTTTTATTTGTAAAGT 58.614 34.615 0.00 0.00 35.52 2.66
66 67 6.818142 CCAATCCCCTGCTTTTATTTGTAAAG 59.182 38.462 0.00 0.00 36.04 1.85
67 68 6.296145 CCCAATCCCCTGCTTTTATTTGTAAA 60.296 38.462 0.00 0.00 0.00 2.01
68 69 5.188751 CCCAATCCCCTGCTTTTATTTGTAA 59.811 40.000 0.00 0.00 0.00 2.41
69 70 4.714308 CCCAATCCCCTGCTTTTATTTGTA 59.286 41.667 0.00 0.00 0.00 2.41
70 71 3.519107 CCCAATCCCCTGCTTTTATTTGT 59.481 43.478 0.00 0.00 0.00 2.83
71 72 3.774216 TCCCAATCCCCTGCTTTTATTTG 59.226 43.478 0.00 0.00 0.00 2.32
72 73 4.073425 TCCCAATCCCCTGCTTTTATTT 57.927 40.909 0.00 0.00 0.00 1.40
73 74 3.774842 TCCCAATCCCCTGCTTTTATT 57.225 42.857 0.00 0.00 0.00 1.40
74 75 3.999764 ATCCCAATCCCCTGCTTTTAT 57.000 42.857 0.00 0.00 0.00 1.40
75 76 3.629796 GGAATCCCAATCCCCTGCTTTTA 60.630 47.826 0.00 0.00 0.00 1.52
76 77 2.470990 GAATCCCAATCCCCTGCTTTT 58.529 47.619 0.00 0.00 0.00 2.27
77 78 1.343377 GGAATCCCAATCCCCTGCTTT 60.343 52.381 0.00 0.00 0.00 3.51
78 79 0.262876 GGAATCCCAATCCCCTGCTT 59.737 55.000 0.00 0.00 0.00 3.91
79 80 0.925720 TGGAATCCCAATCCCCTGCT 60.926 55.000 0.00 0.00 40.09 4.24
80 81 1.620259 TGGAATCCCAATCCCCTGC 59.380 57.895 0.00 0.00 40.09 4.85
90 91 4.476628 AAAATGACAGCAATGGAATCCC 57.523 40.909 0.00 0.00 0.00 3.85
91 92 8.362639 ACATATAAAATGACAGCAATGGAATCC 58.637 33.333 0.00 0.00 0.00 3.01
117 118 9.439500 GGGAGCGTAAATAATTGTAACCATATA 57.561 33.333 0.00 0.00 0.00 0.86
118 119 7.940137 TGGGAGCGTAAATAATTGTAACCATAT 59.060 33.333 0.00 0.00 0.00 1.78
119 120 7.281098 TGGGAGCGTAAATAATTGTAACCATA 58.719 34.615 0.00 0.00 0.00 2.74
120 121 6.123651 TGGGAGCGTAAATAATTGTAACCAT 58.876 36.000 0.00 0.00 0.00 3.55
121 122 5.498393 TGGGAGCGTAAATAATTGTAACCA 58.502 37.500 0.00 0.00 0.00 3.67
122 123 6.439675 TTGGGAGCGTAAATAATTGTAACC 57.560 37.500 0.00 0.00 0.00 2.85
123 124 7.431084 CACATTGGGAGCGTAAATAATTGTAAC 59.569 37.037 0.00 0.00 0.00 2.50
124 125 7.476667 CACATTGGGAGCGTAAATAATTGTAA 58.523 34.615 0.00 0.00 0.00 2.41
125 126 6.459024 GCACATTGGGAGCGTAAATAATTGTA 60.459 38.462 0.00 0.00 0.00 2.41
126 127 5.678616 GCACATTGGGAGCGTAAATAATTGT 60.679 40.000 0.00 0.00 0.00 2.71
127 128 4.739716 GCACATTGGGAGCGTAAATAATTG 59.260 41.667 0.00 0.00 0.00 2.32
128 129 4.644685 AGCACATTGGGAGCGTAAATAATT 59.355 37.500 0.00 0.00 0.00 1.40
129 130 4.207165 AGCACATTGGGAGCGTAAATAAT 58.793 39.130 0.00 0.00 0.00 1.28
130 131 3.616219 AGCACATTGGGAGCGTAAATAA 58.384 40.909 0.00 0.00 0.00 1.40
131 132 3.275617 AGCACATTGGGAGCGTAAATA 57.724 42.857 0.00 0.00 0.00 1.40
132 133 2.128771 AGCACATTGGGAGCGTAAAT 57.871 45.000 0.00 0.00 0.00 1.40
133 134 1.904287 AAGCACATTGGGAGCGTAAA 58.096 45.000 0.00 0.00 0.00 2.01
134 135 2.772077 TAAGCACATTGGGAGCGTAA 57.228 45.000 0.00 0.00 0.00 3.18
135 136 2.169561 TCATAAGCACATTGGGAGCGTA 59.830 45.455 0.00 0.00 0.00 4.42
136 137 1.065491 TCATAAGCACATTGGGAGCGT 60.065 47.619 0.00 0.00 0.00 5.07
137 138 1.667236 TCATAAGCACATTGGGAGCG 58.333 50.000 0.00 0.00 0.00 5.03
138 139 2.954318 ACATCATAAGCACATTGGGAGC 59.046 45.455 0.00 0.00 0.00 4.70
139 140 4.214971 GCTACATCATAAGCACATTGGGAG 59.785 45.833 0.00 0.00 38.63 4.30
140 141 4.136796 GCTACATCATAAGCACATTGGGA 58.863 43.478 0.00 0.00 38.63 4.37
141 142 3.884693 TGCTACATCATAAGCACATTGGG 59.115 43.478 0.00 0.00 43.56 4.12
148 149 1.202639 CCGGGTGCTACATCATAAGCA 60.203 52.381 0.00 0.00 46.11 3.91
149 150 1.202651 ACCGGGTGCTACATCATAAGC 60.203 52.381 6.32 0.00 39.25 3.09
150 151 2.483876 CACCGGGTGCTACATCATAAG 58.516 52.381 15.29 0.00 0.00 1.73
151 152 1.140052 CCACCGGGTGCTACATCATAA 59.860 52.381 21.88 0.00 31.34 1.90
152 153 0.756294 CCACCGGGTGCTACATCATA 59.244 55.000 21.88 0.00 31.34 2.15
153 154 0.980754 TCCACCGGGTGCTACATCAT 60.981 55.000 21.88 0.00 34.93 2.45
154 155 0.980754 ATCCACCGGGTGCTACATCA 60.981 55.000 21.88 0.00 34.93 3.07
155 156 0.249911 GATCCACCGGGTGCTACATC 60.250 60.000 21.88 14.41 34.93 3.06
156 157 0.691078 AGATCCACCGGGTGCTACAT 60.691 55.000 21.88 9.86 34.93 2.29
157 158 0.907704 AAGATCCACCGGGTGCTACA 60.908 55.000 21.88 5.30 34.93 2.74
158 159 0.252197 AAAGATCCACCGGGTGCTAC 59.748 55.000 21.88 13.42 34.93 3.58
159 160 1.760613 CTAAAGATCCACCGGGTGCTA 59.239 52.381 21.88 11.97 34.93 3.49
160 161 0.541863 CTAAAGATCCACCGGGTGCT 59.458 55.000 21.88 10.65 34.93 4.40
161 162 1.095807 GCTAAAGATCCACCGGGTGC 61.096 60.000 21.88 8.37 34.93 5.01
162 163 0.541863 AGCTAAAGATCCACCGGGTG 59.458 55.000 20.41 20.41 34.93 4.61
163 164 2.040178 CTAGCTAAAGATCCACCGGGT 58.960 52.381 6.32 0.00 34.93 5.28
164 165 1.270358 GCTAGCTAAAGATCCACCGGG 60.270 57.143 7.70 0.00 0.00 5.73
165 166 1.603172 CGCTAGCTAAAGATCCACCGG 60.603 57.143 13.93 0.00 0.00 5.28
166 167 1.067212 ACGCTAGCTAAAGATCCACCG 59.933 52.381 13.93 0.00 0.00 4.94
167 168 2.159085 ACACGCTAGCTAAAGATCCACC 60.159 50.000 13.93 0.00 0.00 4.61
168 169 3.166489 ACACGCTAGCTAAAGATCCAC 57.834 47.619 13.93 0.00 0.00 4.02
169 170 4.583073 TGATACACGCTAGCTAAAGATCCA 59.417 41.667 13.93 0.00 0.00 3.41
170 171 5.122512 TGATACACGCTAGCTAAAGATCC 57.877 43.478 13.93 0.00 0.00 3.36
171 172 6.616947 AGATGATACACGCTAGCTAAAGATC 58.383 40.000 13.93 9.40 0.00 2.75
172 173 6.582677 AGATGATACACGCTAGCTAAAGAT 57.417 37.500 13.93 0.00 0.00 2.40
173 174 6.392625 AAGATGATACACGCTAGCTAAAGA 57.607 37.500 13.93 0.00 0.00 2.52
174 175 7.364200 ACTAAGATGATACACGCTAGCTAAAG 58.636 38.462 13.93 0.00 0.00 1.85
175 176 7.273320 ACTAAGATGATACACGCTAGCTAAA 57.727 36.000 13.93 0.00 0.00 1.85
176 177 6.879276 ACTAAGATGATACACGCTAGCTAA 57.121 37.500 13.93 0.00 0.00 3.09
177 178 7.974482 TTACTAAGATGATACACGCTAGCTA 57.026 36.000 13.93 0.00 0.00 3.32
178 179 6.879276 TTACTAAGATGATACACGCTAGCT 57.121 37.500 13.93 0.00 0.00 3.32
179 180 8.024285 AGATTTACTAAGATGATACACGCTAGC 58.976 37.037 4.06 4.06 0.00 3.42
180 181 9.900710 AAGATTTACTAAGATGATACACGCTAG 57.099 33.333 0.00 0.00 0.00 3.42
468 476 6.427547 TCGTTTGGTAGTATCGTTTCCATTTT 59.572 34.615 0.00 0.00 0.00 1.82
469 477 5.933463 TCGTTTGGTAGTATCGTTTCCATTT 59.067 36.000 0.00 0.00 0.00 2.32
682 690 9.507329 TCTATTGTACTCTTTTTCAAGAATGCT 57.493 29.630 0.00 0.00 38.63 3.79
997 1005 2.755876 TCGAGCCGCTGACATCCT 60.756 61.111 0.00 0.00 0.00 3.24
1010 1018 1.265635 CTGGAGATAAGCGGACTCGAG 59.734 57.143 11.84 11.84 39.00 4.04
1149 1157 3.040147 ACGTTAAGGATATGCCATCCG 57.960 47.619 1.43 0.00 42.87 4.18
1160 1168 4.023726 ACCTTGCCATTAACGTTAAGGA 57.976 40.909 28.77 14.34 38.38 3.36
1177 1185 3.916035 AGCCTTTCCTCTTTTGAACCTT 58.084 40.909 0.00 0.00 0.00 3.50
1302 1310 2.365293 AGCAGGCAGTTTAAAAGGTTGG 59.635 45.455 0.00 0.00 0.00 3.77
1666 1674 9.569122 AGACAGTAAAAGCCAAAATAGACTAAA 57.431 29.630 0.00 0.00 0.00 1.85
1668 1676 9.649167 GTAGACAGTAAAAGCCAAAATAGACTA 57.351 33.333 0.00 0.00 0.00 2.59
1669 1677 8.376270 AGTAGACAGTAAAAGCCAAAATAGACT 58.624 33.333 0.00 0.00 0.00 3.24
1670 1678 8.549338 AGTAGACAGTAAAAGCCAAAATAGAC 57.451 34.615 0.00 0.00 0.00 2.59
1671 1679 9.569122 AAAGTAGACAGTAAAAGCCAAAATAGA 57.431 29.630 0.00 0.00 0.00 1.98
1674 1682 8.914011 AGAAAAGTAGACAGTAAAAGCCAAAAT 58.086 29.630 0.00 0.00 0.00 1.82
1675 1683 8.288689 AGAAAAGTAGACAGTAAAAGCCAAAA 57.711 30.769 0.00 0.00 0.00 2.44
1676 1684 7.554835 TGAGAAAAGTAGACAGTAAAAGCCAAA 59.445 33.333 0.00 0.00 0.00 3.28
1677 1685 7.051623 TGAGAAAAGTAGACAGTAAAAGCCAA 58.948 34.615 0.00 0.00 0.00 4.52
1678 1686 6.588204 TGAGAAAAGTAGACAGTAAAAGCCA 58.412 36.000 0.00 0.00 0.00 4.75
1679 1687 6.147985 CCTGAGAAAAGTAGACAGTAAAAGCC 59.852 42.308 0.00 0.00 0.00 4.35
1680 1688 6.147985 CCCTGAGAAAAGTAGACAGTAAAAGC 59.852 42.308 0.00 0.00 0.00 3.51
1681 1689 7.442656 TCCCTGAGAAAAGTAGACAGTAAAAG 58.557 38.462 0.00 0.00 0.00 2.27
1682 1690 7.289317 TCTCCCTGAGAAAAGTAGACAGTAAAA 59.711 37.037 0.00 0.00 35.59 1.52
1683 1691 6.781014 TCTCCCTGAGAAAAGTAGACAGTAAA 59.219 38.462 0.00 0.00 35.59 2.01
1684 1692 6.312529 TCTCCCTGAGAAAAGTAGACAGTAA 58.687 40.000 0.00 0.00 35.59 2.24
1685 1693 5.888901 TCTCCCTGAGAAAAGTAGACAGTA 58.111 41.667 0.00 0.00 35.59 2.74
1686 1694 4.742012 TCTCCCTGAGAAAAGTAGACAGT 58.258 43.478 0.00 0.00 35.59 3.55
1687 1695 5.395103 CCATCTCCCTGAGAAAAGTAGACAG 60.395 48.000 0.00 0.00 42.27 3.51
1688 1696 4.467795 CCATCTCCCTGAGAAAAGTAGACA 59.532 45.833 0.00 0.00 42.27 3.41
1689 1697 4.468153 ACCATCTCCCTGAGAAAAGTAGAC 59.532 45.833 0.00 0.00 42.27 2.59
1690 1698 4.689062 ACCATCTCCCTGAGAAAAGTAGA 58.311 43.478 0.00 0.00 42.27 2.59
1691 1699 5.428184 AACCATCTCCCTGAGAAAAGTAG 57.572 43.478 0.00 0.00 42.27 2.57
1692 1700 6.070194 CCTTAACCATCTCCCTGAGAAAAGTA 60.070 42.308 0.00 0.00 42.27 2.24
1693 1701 5.280727 CCTTAACCATCTCCCTGAGAAAAGT 60.281 44.000 0.00 0.00 42.27 2.66
1694 1702 5.045578 TCCTTAACCATCTCCCTGAGAAAAG 60.046 44.000 0.00 0.00 42.27 2.27
1695 1703 4.849810 TCCTTAACCATCTCCCTGAGAAAA 59.150 41.667 0.00 0.00 42.27 2.29
1696 1704 4.225267 GTCCTTAACCATCTCCCTGAGAAA 59.775 45.833 0.00 0.00 42.27 2.52
1697 1705 3.775316 GTCCTTAACCATCTCCCTGAGAA 59.225 47.826 0.00 0.00 42.27 2.87
1698 1706 3.375699 GTCCTTAACCATCTCCCTGAGA 58.624 50.000 0.00 0.00 43.20 3.27
1699 1707 3.828875 GTCCTTAACCATCTCCCTGAG 57.171 52.381 0.00 0.00 0.00 3.35
1711 1719 6.399639 CCTCTATCTTCTGAGGTCCTTAAC 57.600 45.833 0.00 0.00 43.49 2.01
1720 1728 2.226437 GCGCTCTCCTCTATCTTCTGAG 59.774 54.545 0.00 0.00 0.00 3.35
1721 1729 2.226330 GCGCTCTCCTCTATCTTCTGA 58.774 52.381 0.00 0.00 0.00 3.27
1722 1730 1.269448 GGCGCTCTCCTCTATCTTCTG 59.731 57.143 7.64 0.00 0.00 3.02
1723 1731 1.133637 TGGCGCTCTCCTCTATCTTCT 60.134 52.381 7.64 0.00 0.00 2.85
1724 1732 1.269448 CTGGCGCTCTCCTCTATCTTC 59.731 57.143 7.64 0.00 0.00 2.87
1725 1733 1.327303 CTGGCGCTCTCCTCTATCTT 58.673 55.000 7.64 0.00 0.00 2.40
1726 1734 0.539438 CCTGGCGCTCTCCTCTATCT 60.539 60.000 7.64 0.00 0.00 1.98
1727 1735 1.963679 CCTGGCGCTCTCCTCTATC 59.036 63.158 7.64 0.00 0.00 2.08
1728 1736 2.206536 GCCTGGCGCTCTCCTCTAT 61.207 63.158 7.64 0.00 0.00 1.98
1729 1737 2.835431 GCCTGGCGCTCTCCTCTA 60.835 66.667 7.64 0.00 0.00 2.43
1736 1744 4.496336 AATCTGGGCCTGGCGCTC 62.496 66.667 31.89 16.09 42.10 5.03
1737 1745 4.052518 AAATCTGGGCCTGGCGCT 62.053 61.111 31.89 13.21 42.10 5.92
1738 1746 3.521796 GAAATCTGGGCCTGGCGC 61.522 66.667 27.02 27.02 41.94 6.53
1739 1747 2.830370 GGAAATCTGGGCCTGGCG 60.830 66.667 13.40 0.00 0.00 5.69
1740 1748 2.830370 CGGAAATCTGGGCCTGGC 60.830 66.667 11.05 11.05 0.00 4.85
1741 1749 2.124151 CCGGAAATCTGGGCCTGG 60.124 66.667 10.79 0.45 38.76 4.45
1742 1750 0.106519 ATTCCGGAAATCTGGGCCTG 60.107 55.000 23.08 4.06 42.72 4.85
1743 1751 1.143073 GTATTCCGGAAATCTGGGCCT 59.857 52.381 23.08 3.43 42.72 5.19
1744 1752 1.143073 AGTATTCCGGAAATCTGGGCC 59.857 52.381 23.08 0.00 42.72 5.80
1745 1753 2.640316 AGTATTCCGGAAATCTGGGC 57.360 50.000 23.08 6.43 42.72 5.36
1759 1767 3.709653 TGAGCATTCCCCGTAGAAGTATT 59.290 43.478 0.00 0.00 0.00 1.89
1760 1768 3.305720 TGAGCATTCCCCGTAGAAGTAT 58.694 45.455 0.00 0.00 0.00 2.12
1761 1769 2.742348 TGAGCATTCCCCGTAGAAGTA 58.258 47.619 0.00 0.00 0.00 2.24
1762 1770 1.568504 TGAGCATTCCCCGTAGAAGT 58.431 50.000 0.00 0.00 0.00 3.01
1763 1771 2.874701 CAATGAGCATTCCCCGTAGAAG 59.125 50.000 0.00 0.00 0.00 2.85
1764 1772 2.503765 TCAATGAGCATTCCCCGTAGAA 59.496 45.455 0.00 0.00 0.00 2.10
1765 1773 2.115427 TCAATGAGCATTCCCCGTAGA 58.885 47.619 0.00 0.00 0.00 2.59
1766 1774 2.620251 TCAATGAGCATTCCCCGTAG 57.380 50.000 0.00 0.00 0.00 3.51
1767 1775 3.118075 TCATTCAATGAGCATTCCCCGTA 60.118 43.478 0.00 0.00 33.59 4.02
1768 1776 2.026641 CATTCAATGAGCATTCCCCGT 58.973 47.619 0.00 0.00 0.00 5.28
1769 1777 2.300433 TCATTCAATGAGCATTCCCCG 58.700 47.619 0.00 0.00 33.59 5.73
1784 1792 6.602406 AGGCATAATATGGAGAATGCTCATTC 59.398 38.462 13.22 13.22 45.66 2.67
1785 1793 6.491383 AGGCATAATATGGAGAATGCTCATT 58.509 36.000 2.29 0.00 43.33 2.57
1786 1794 6.075949 AGGCATAATATGGAGAATGCTCAT 57.924 37.500 2.29 0.00 43.33 2.90
1787 1795 5.509832 AGGCATAATATGGAGAATGCTCA 57.490 39.130 2.29 0.00 43.33 4.26
1788 1796 5.942236 TCAAGGCATAATATGGAGAATGCTC 59.058 40.000 2.13 0.00 43.33 4.26
1789 1797 5.884322 TCAAGGCATAATATGGAGAATGCT 58.116 37.500 2.13 0.00 43.33 3.79
1790 1798 6.432162 TCTTCAAGGCATAATATGGAGAATGC 59.568 38.462 2.13 0.00 43.13 3.56
1791 1799 7.120873 CCTCTTCAAGGCATAATATGGAGAATG 59.879 40.741 2.13 0.00 38.67 2.67
1792 1800 7.017950 TCCTCTTCAAGGCATAATATGGAGAAT 59.982 37.037 2.13 0.00 45.78 2.40
1793 1801 6.329986 TCCTCTTCAAGGCATAATATGGAGAA 59.670 38.462 2.13 0.00 45.78 2.87
1794 1802 5.846164 TCCTCTTCAAGGCATAATATGGAGA 59.154 40.000 2.13 0.00 45.78 3.71
1795 1803 5.936956 GTCCTCTTCAAGGCATAATATGGAG 59.063 44.000 2.13 0.00 45.78 3.86
1796 1804 5.608437 AGTCCTCTTCAAGGCATAATATGGA 59.392 40.000 2.13 0.00 45.78 3.41
1797 1805 5.874093 AGTCCTCTTCAAGGCATAATATGG 58.126 41.667 2.13 0.00 45.78 2.74
1798 1806 5.636965 CGAGTCCTCTTCAAGGCATAATATG 59.363 44.000 0.00 0.00 45.78 1.78
1799 1807 5.540337 TCGAGTCCTCTTCAAGGCATAATAT 59.460 40.000 0.00 0.00 45.78 1.28
1800 1808 4.893524 TCGAGTCCTCTTCAAGGCATAATA 59.106 41.667 0.00 0.00 45.78 0.98
1801 1809 3.706594 TCGAGTCCTCTTCAAGGCATAAT 59.293 43.478 0.00 0.00 45.78 1.28
1802 1810 3.096852 TCGAGTCCTCTTCAAGGCATAA 58.903 45.455 0.00 0.00 45.78 1.90
1803 1811 2.735151 TCGAGTCCTCTTCAAGGCATA 58.265 47.619 0.00 0.00 45.78 3.14
1804 1812 1.561643 TCGAGTCCTCTTCAAGGCAT 58.438 50.000 0.00 0.00 45.78 4.40
1805 1813 1.000955 GTTCGAGTCCTCTTCAAGGCA 59.999 52.381 0.00 0.00 45.78 4.75
1806 1814 1.673329 GGTTCGAGTCCTCTTCAAGGC 60.673 57.143 2.12 0.00 45.78 4.35
1807 1815 2.094442 GAGGTTCGAGTCCTCTTCAAGG 60.094 54.545 22.95 0.00 45.56 3.61
1808 1816 3.224884 GAGGTTCGAGTCCTCTTCAAG 57.775 52.381 22.95 0.00 45.56 3.02
1815 1823 2.637383 GCGTGGAGGTTCGAGTCCT 61.637 63.158 10.36 10.36 38.09 3.85
1816 1824 2.126031 GCGTGGAGGTTCGAGTCC 60.126 66.667 4.07 4.07 0.00 3.85
1817 1825 1.153997 GAGCGTGGAGGTTCGAGTC 60.154 63.158 0.00 0.00 0.00 3.36
1818 1826 1.179814 AAGAGCGTGGAGGTTCGAGT 61.180 55.000 0.00 0.00 0.00 4.18
1819 1827 0.456995 GAAGAGCGTGGAGGTTCGAG 60.457 60.000 0.00 0.00 0.00 4.04
1820 1828 1.176619 TGAAGAGCGTGGAGGTTCGA 61.177 55.000 0.00 0.00 0.00 3.71
1821 1829 0.734253 CTGAAGAGCGTGGAGGTTCG 60.734 60.000 0.00 0.00 0.00 3.95
1822 1830 1.016653 GCTGAAGAGCGTGGAGGTTC 61.017 60.000 0.00 0.00 34.87 3.62
1823 1831 1.004440 GCTGAAGAGCGTGGAGGTT 60.004 57.895 0.00 0.00 34.87 3.50
1824 1832 2.659610 GCTGAAGAGCGTGGAGGT 59.340 61.111 0.00 0.00 34.87 3.85
1832 1840 2.738846 TGAAAATCTCGTGCTGAAGAGC 59.261 45.455 0.00 0.00 46.44 4.09
1833 1841 3.993081 ACTGAAAATCTCGTGCTGAAGAG 59.007 43.478 0.00 0.00 35.91 2.85
1834 1842 3.990469 GACTGAAAATCTCGTGCTGAAGA 59.010 43.478 0.00 0.00 0.00 2.87
1835 1843 3.993081 AGACTGAAAATCTCGTGCTGAAG 59.007 43.478 0.00 0.00 0.00 3.02
1836 1844 3.990469 GAGACTGAAAATCTCGTGCTGAA 59.010 43.478 0.00 0.00 33.68 3.02
1837 1845 3.579709 GAGACTGAAAATCTCGTGCTGA 58.420 45.455 0.00 0.00 33.68 4.26
1838 1846 3.987807 GAGACTGAAAATCTCGTGCTG 57.012 47.619 0.00 0.00 33.68 4.41
1844 1852 2.329379 ACACGCGAGACTGAAAATCTC 58.671 47.619 15.93 0.00 39.44 2.75
1845 1853 2.029828 AGACACGCGAGACTGAAAATCT 60.030 45.455 15.93 0.00 0.00 2.40
1846 1854 2.329379 AGACACGCGAGACTGAAAATC 58.671 47.619 15.93 0.00 0.00 2.17
1847 1855 2.440539 AGACACGCGAGACTGAAAAT 57.559 45.000 15.93 0.00 0.00 1.82
1848 1856 2.606308 GGTAGACACGCGAGACTGAAAA 60.606 50.000 15.93 0.00 0.00 2.29
1849 1857 1.068748 GGTAGACACGCGAGACTGAAA 60.069 52.381 15.93 0.00 0.00 2.69
1850 1858 0.520404 GGTAGACACGCGAGACTGAA 59.480 55.000 15.93 0.00 0.00 3.02
1851 1859 0.604511 TGGTAGACACGCGAGACTGA 60.605 55.000 15.93 0.00 0.00 3.41
1852 1860 0.452184 ATGGTAGACACGCGAGACTG 59.548 55.000 15.93 2.09 0.00 3.51
1853 1861 1.174783 AATGGTAGACACGCGAGACT 58.825 50.000 15.93 14.16 0.00 3.24
1854 1862 1.918609 GAAATGGTAGACACGCGAGAC 59.081 52.381 15.93 5.23 0.00 3.36
1855 1863 1.542472 TGAAATGGTAGACACGCGAGA 59.458 47.619 15.93 0.00 0.00 4.04
1856 1864 1.654105 GTGAAATGGTAGACACGCGAG 59.346 52.381 15.93 7.88 0.00 5.03
1857 1865 1.670674 GGTGAAATGGTAGACACGCGA 60.671 52.381 15.93 0.00 34.59 5.87
1858 1866 0.719465 GGTGAAATGGTAGACACGCG 59.281 55.000 3.53 3.53 34.59 6.01
1859 1867 1.803334 TGGTGAAATGGTAGACACGC 58.197 50.000 0.00 0.00 34.59 5.34
1860 1868 3.595173 TGATGGTGAAATGGTAGACACG 58.405 45.455 0.00 0.00 34.59 4.49
1861 1869 4.396166 CCTTGATGGTGAAATGGTAGACAC 59.604 45.833 0.00 0.00 0.00 3.67
1862 1870 4.588899 CCTTGATGGTGAAATGGTAGACA 58.411 43.478 0.00 0.00 0.00 3.41
1863 1871 3.378427 GCCTTGATGGTGAAATGGTAGAC 59.622 47.826 0.00 0.00 38.35 2.59
1864 1872 3.010027 TGCCTTGATGGTGAAATGGTAGA 59.990 43.478 0.00 0.00 38.35 2.59
1865 1873 3.355378 TGCCTTGATGGTGAAATGGTAG 58.645 45.455 0.00 0.00 38.35 3.18
1866 1874 3.448093 TGCCTTGATGGTGAAATGGTA 57.552 42.857 0.00 0.00 38.35 3.25
1867 1875 2.307496 TGCCTTGATGGTGAAATGGT 57.693 45.000 0.00 0.00 38.35 3.55
1868 1876 3.028850 AGATGCCTTGATGGTGAAATGG 58.971 45.455 0.00 0.00 38.35 3.16
1869 1877 4.730949 AAGATGCCTTGATGGTGAAATG 57.269 40.909 0.00 0.00 38.35 2.32
1881 1889 4.074970 ACGATTCACTTTCAAGATGCCTT 58.925 39.130 0.00 0.00 0.00 4.35
1882 1890 3.679389 ACGATTCACTTTCAAGATGCCT 58.321 40.909 0.00 0.00 0.00 4.75
1883 1891 5.741388 ATACGATTCACTTTCAAGATGCC 57.259 39.130 0.00 0.00 0.00 4.40
1884 1892 6.183360 TGGAATACGATTCACTTTCAAGATGC 60.183 38.462 0.00 0.00 0.00 3.91
1885 1893 7.307493 TGGAATACGATTCACTTTCAAGATG 57.693 36.000 0.00 0.00 0.00 2.90
1886 1894 7.770433 TCATGGAATACGATTCACTTTCAAGAT 59.230 33.333 0.00 0.00 0.00 2.40
1887 1895 7.102993 TCATGGAATACGATTCACTTTCAAGA 58.897 34.615 0.00 0.00 0.00 3.02
1888 1896 7.307493 TCATGGAATACGATTCACTTTCAAG 57.693 36.000 0.00 0.00 0.00 3.02
1889 1897 7.680442 TTCATGGAATACGATTCACTTTCAA 57.320 32.000 0.00 0.00 0.00 2.69
1890 1898 7.864108 ATTCATGGAATACGATTCACTTTCA 57.136 32.000 0.00 0.00 29.72 2.69
1891 1899 9.817365 CATATTCATGGAATACGATTCACTTTC 57.183 33.333 1.09 0.00 37.34 2.62
1892 1900 9.559732 TCATATTCATGGAATACGATTCACTTT 57.440 29.630 1.09 0.00 37.34 2.66
1893 1901 9.730705 ATCATATTCATGGAATACGATTCACTT 57.269 29.630 2.66 0.00 34.99 3.16
1936 1944 8.894592 ACTCCACCTTTGTCATATATTCCATAT 58.105 33.333 0.00 0.00 0.00 1.78
1937 1945 8.275187 ACTCCACCTTTGTCATATATTCCATA 57.725 34.615 0.00 0.00 0.00 2.74
1938 1946 7.072961 AGACTCCACCTTTGTCATATATTCCAT 59.927 37.037 0.00 0.00 33.56 3.41
1939 1947 6.386927 AGACTCCACCTTTGTCATATATTCCA 59.613 38.462 0.00 0.00 33.56 3.53
1940 1948 6.831976 AGACTCCACCTTTGTCATATATTCC 58.168 40.000 0.00 0.00 33.56 3.01
1941 1949 7.227512 CCAAGACTCCACCTTTGTCATATATTC 59.772 40.741 0.00 0.00 33.56 1.75
1942 1950 7.056635 CCAAGACTCCACCTTTGTCATATATT 58.943 38.462 0.00 0.00 33.56 1.28
1943 1951 6.386927 TCCAAGACTCCACCTTTGTCATATAT 59.613 38.462 0.00 0.00 33.56 0.86
1944 1952 5.724370 TCCAAGACTCCACCTTTGTCATATA 59.276 40.000 0.00 0.00 33.56 0.86
1945 1953 4.536090 TCCAAGACTCCACCTTTGTCATAT 59.464 41.667 0.00 0.00 33.56 1.78
1946 1954 3.907474 TCCAAGACTCCACCTTTGTCATA 59.093 43.478 0.00 0.00 33.56 2.15
1947 1955 2.711009 TCCAAGACTCCACCTTTGTCAT 59.289 45.455 0.00 0.00 33.56 3.06
1948 1956 2.104792 CTCCAAGACTCCACCTTTGTCA 59.895 50.000 0.00 0.00 33.56 3.58
1949 1957 2.104963 ACTCCAAGACTCCACCTTTGTC 59.895 50.000 0.00 0.00 0.00 3.18
1950 1958 2.127708 ACTCCAAGACTCCACCTTTGT 58.872 47.619 0.00 0.00 0.00 2.83
1951 1959 2.938956 ACTCCAAGACTCCACCTTTG 57.061 50.000 0.00 0.00 0.00 2.77
1952 1960 5.561679 GAAATACTCCAAGACTCCACCTTT 58.438 41.667 0.00 0.00 0.00 3.11
1953 1961 4.322801 CGAAATACTCCAAGACTCCACCTT 60.323 45.833 0.00 0.00 0.00 3.50
1954 1962 3.195825 CGAAATACTCCAAGACTCCACCT 59.804 47.826 0.00 0.00 0.00 4.00
1955 1963 3.194968 TCGAAATACTCCAAGACTCCACC 59.805 47.826 0.00 0.00 0.00 4.61
1956 1964 4.451629 TCGAAATACTCCAAGACTCCAC 57.548 45.455 0.00 0.00 0.00 4.02
1957 1965 4.202020 CGATCGAAATACTCCAAGACTCCA 60.202 45.833 10.26 0.00 0.00 3.86
1958 1966 4.036498 TCGATCGAAATACTCCAAGACTCC 59.964 45.833 16.99 0.00 0.00 3.85
1959 1967 5.171147 TCGATCGAAATACTCCAAGACTC 57.829 43.478 16.99 0.00 0.00 3.36
1960 1968 5.764131 GATCGATCGAAATACTCCAAGACT 58.236 41.667 23.50 0.00 0.00 3.24
1976 1984 2.952978 AGGCCTATATGACCGATCGATC 59.047 50.000 18.66 15.68 0.00 3.69
1977 1985 2.690497 CAGGCCTATATGACCGATCGAT 59.310 50.000 18.66 0.00 0.00 3.59
1978 1986 2.092323 CAGGCCTATATGACCGATCGA 58.908 52.381 18.66 0.00 0.00 3.59
1979 1987 2.092323 TCAGGCCTATATGACCGATCG 58.908 52.381 3.98 8.51 0.00 3.69
1980 1988 3.093057 ACTCAGGCCTATATGACCGATC 58.907 50.000 3.98 0.00 0.00 3.69
1981 1989 3.093057 GACTCAGGCCTATATGACCGAT 58.907 50.000 3.98 0.00 0.00 4.18
1982 1990 2.158519 TGACTCAGGCCTATATGACCGA 60.159 50.000 3.98 0.00 0.00 4.69
1983 1991 2.230025 CTGACTCAGGCCTATATGACCG 59.770 54.545 3.98 0.00 0.00 4.79
1984 1992 3.257127 GTCTGACTCAGGCCTATATGACC 59.743 52.174 3.98 0.00 28.61 4.02
1985 1993 3.891977 TGTCTGACTCAGGCCTATATGAC 59.108 47.826 3.98 10.16 34.88 3.06
1986 1994 4.184649 TGTCTGACTCAGGCCTATATGA 57.815 45.455 3.98 0.00 34.88 2.15
1987 1995 4.343526 ACTTGTCTGACTCAGGCCTATATG 59.656 45.833 3.98 0.00 34.88 1.78
1988 1996 4.551671 ACTTGTCTGACTCAGGCCTATAT 58.448 43.478 3.98 0.00 34.88 0.86
1989 1997 3.954904 GACTTGTCTGACTCAGGCCTATA 59.045 47.826 3.98 0.00 34.88 1.31
1990 1998 2.763448 GACTTGTCTGACTCAGGCCTAT 59.237 50.000 3.98 0.00 34.88 2.57
1991 1999 2.171840 GACTTGTCTGACTCAGGCCTA 58.828 52.381 3.98 0.00 34.88 3.93
1992 2000 0.972883 GACTTGTCTGACTCAGGCCT 59.027 55.000 0.00 0.00 34.88 5.19
1993 2001 0.036858 GGACTTGTCTGACTCAGGCC 60.037 60.000 14.36 14.36 34.88 5.19
1994 2002 0.036858 GGGACTTGTCTGACTCAGGC 60.037 60.000 9.51 3.49 36.52 4.85
1995 2003 1.548269 GAGGGACTTGTCTGACTCAGG 59.452 57.143 9.51 0.00 41.55 3.86
1996 2004 1.548269 GGAGGGACTTGTCTGACTCAG 59.452 57.143 9.51 7.58 41.55 3.35
1997 2005 1.633774 GGAGGGACTTGTCTGACTCA 58.366 55.000 9.51 0.00 41.55 3.41
1998 2006 0.899019 GGGAGGGACTTGTCTGACTC 59.101 60.000 9.51 0.00 41.55 3.36
1999 2007 0.489567 AGGGAGGGACTTGTCTGACT 59.510 55.000 9.51 0.00 41.55 3.41
2000 2008 2.233305 TAGGGAGGGACTTGTCTGAC 57.767 55.000 0.00 0.00 41.55 3.51
2001 2009 4.016479 AGTTATAGGGAGGGACTTGTCTGA 60.016 45.833 0.61 0.00 41.55 3.27
2002 2010 4.290942 AGTTATAGGGAGGGACTTGTCTG 58.709 47.826 0.61 0.00 41.55 3.51
2003 2011 4.233287 AGAGTTATAGGGAGGGACTTGTCT 59.767 45.833 0.61 0.00 41.55 3.41
2004 2012 4.548669 AGAGTTATAGGGAGGGACTTGTC 58.451 47.826 0.00 0.00 41.55 3.18
2005 2013 4.628661 AGAGTTATAGGGAGGGACTTGT 57.371 45.455 0.00 0.00 41.55 3.16
2006 2014 4.962995 TCAAGAGTTATAGGGAGGGACTTG 59.037 45.833 0.00 0.00 41.55 3.16
2198 2208 2.843401 TACACAGGGTGTACGCATTT 57.157 45.000 8.97 0.00 45.56 2.32
2509 2519 5.122711 GCCTACTCTACTTTCCTATCTAGCG 59.877 48.000 0.00 0.00 0.00 4.26
2510 2520 6.005198 TGCCTACTCTACTTTCCTATCTAGC 58.995 44.000 0.00 0.00 0.00 3.42
2605 2619 2.033602 CAACCACTCGGGGGTTCC 59.966 66.667 7.51 0.00 45.26 3.62
2606 2620 2.671963 GCAACCACTCGGGGGTTC 60.672 66.667 7.51 1.14 45.26 3.62
2613 2627 1.562575 GGTACAACCGCAACCACTCG 61.563 60.000 0.00 0.00 33.28 4.18
2614 2628 0.250166 AGGTACAACCGCAACCACTC 60.250 55.000 0.00 0.00 44.90 3.51
2615 2629 0.534203 CAGGTACAACCGCAACCACT 60.534 55.000 0.00 0.00 44.90 4.00
2616 2630 0.816421 ACAGGTACAACCGCAACCAC 60.816 55.000 0.00 0.00 44.90 4.16
2617 2631 0.757512 TACAGGTACAACCGCAACCA 59.242 50.000 0.00 0.00 44.90 3.67
2618 2632 1.150827 GTACAGGTACAACCGCAACC 58.849 55.000 4.76 0.00 44.90 3.77
2619 2633 1.796459 CAGTACAGGTACAACCGCAAC 59.204 52.381 11.78 0.00 44.90 4.17
2620 2634 1.413445 ACAGTACAGGTACAACCGCAA 59.587 47.619 11.78 0.00 44.90 4.85
2621 2635 1.042229 ACAGTACAGGTACAACCGCA 58.958 50.000 11.78 0.00 44.90 5.69
2622 2636 2.416431 CCTACAGTACAGGTACAACCGC 60.416 54.545 11.78 0.00 44.90 5.68
2623 2637 3.084039 TCCTACAGTACAGGTACAACCG 58.916 50.000 11.78 0.80 44.90 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.