Multiple sequence alignment - TraesCS7D01G254400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G254400 chr7D 100.000 4350 0 0 1 4350 231379884 231384233 0.000000e+00 8034.0
1 TraesCS7D01G254400 chr7D 75.887 282 48 15 4052 4322 384040893 384041165 4.570000e-25 126.0
2 TraesCS7D01G254400 chr7B 92.267 1513 63 28 302 1773 202823153 202824652 0.000000e+00 2097.0
3 TraesCS7D01G254400 chr7B 82.407 1421 136 39 2250 3594 202825267 202826649 0.000000e+00 1134.0
4 TraesCS7D01G254400 chr7B 85.201 473 39 17 1788 2247 202824761 202825215 1.430000e-124 457.0
5 TraesCS7D01G254400 chr7B 90.184 163 6 5 130 290 202822940 202823094 2.050000e-48 204.0
6 TraesCS7D01G254400 chr7B 93.382 136 7 2 1 134 202822648 202822783 2.650000e-47 200.0
7 TraesCS7D01G254400 chr7B 82.418 91 14 2 1196 1285 600965073 600964984 1.300000e-10 78.7
8 TraesCS7D01G254400 chr7A 88.224 1503 108 29 2250 3689 244480874 244482370 0.000000e+00 1731.0
9 TraesCS7D01G254400 chr7A 91.757 922 42 21 853 1754 244479515 244480422 0.000000e+00 1251.0
10 TraesCS7D01G254400 chr7A 86.411 677 52 10 3686 4350 244482578 244483226 0.000000e+00 704.0
11 TraesCS7D01G254400 chr7A 88.658 529 14 11 375 871 244478892 244479406 1.730000e-168 603.0
12 TraesCS7D01G254400 chr7A 91.864 295 19 5 1 290 244478452 244478746 1.460000e-109 407.0
13 TraesCS7D01G254400 chr7A 91.829 257 10 6 2010 2259 244480589 244480841 8.950000e-92 348.0
14 TraesCS7D01G254400 chr7A 75.661 378 73 13 3748 4107 1314504 1314128 2.080000e-38 171.0
15 TraesCS7D01G254400 chr7A 96.104 77 3 0 302 378 244478785 244478861 4.570000e-25 126.0
16 TraesCS7D01G254400 chr7A 82.474 97 15 2 1196 1291 640550637 640550542 2.790000e-12 84.2
17 TraesCS7D01G254400 chr3B 77.971 690 102 30 3679 4344 447970729 447971392 1.900000e-103 387.0
18 TraesCS7D01G254400 chr6D 80.620 516 80 13 3668 4171 60498826 60498319 8.830000e-102 381.0
19 TraesCS7D01G254400 chr3D 76.923 689 111 28 3679 4344 348146081 348146744 8.950000e-92 348.0
20 TraesCS7D01G254400 chr3D 81.605 299 51 4 3679 3975 482020370 482020666 1.210000e-60 244.0
21 TraesCS7D01G254400 chr6A 76.379 580 116 12 3787 4350 521988405 521988979 4.260000e-75 292.0
22 TraesCS7D01G254400 chr6B 75.400 687 120 36 3701 4350 533285794 533286468 1.980000e-73 287.0
23 TraesCS7D01G254400 chr4D 81.215 362 55 10 4001 4350 315079123 315078763 3.310000e-71 279.0
24 TraesCS7D01G254400 chr4D 84.848 99 13 2 3668 3765 42534807 42534710 9.960000e-17 99.0
25 TraesCS7D01G254400 chr2A 75.712 667 103 29 3705 4349 585984979 585985608 3.310000e-71 279.0
26 TraesCS7D01G254400 chr2A 78.731 268 52 5 3697 3962 638588232 638587968 1.610000e-39 174.0
27 TraesCS7D01G254400 chr2A 78.049 164 31 3 4182 4340 389437248 389437411 9.960000e-17 99.0
28 TraesCS7D01G254400 chr1D 75.460 652 113 31 3709 4344 328861451 328862071 1.540000e-69 274.0
29 TraesCS7D01G254400 chr1D 83.333 186 31 0 1034 1219 470076671 470076486 5.780000e-39 172.0
30 TraesCS7D01G254400 chr1D 79.902 204 37 4 1018 1219 184470881 184471082 3.510000e-31 147.0
31 TraesCS7D01G254400 chr2D 76.234 547 90 21 3824 4349 55160171 55160698 2.010000e-63 254.0
32 TraesCS7D01G254400 chr2D 82.812 192 22 9 1 189 66832881 66832698 1.250000e-35 161.0
33 TraesCS7D01G254400 chr2D 81.250 112 16 3 4218 4324 308478901 308479012 7.750000e-13 86.1
34 TraesCS7D01G254400 chr1B 83.871 186 30 0 1034 1219 652458912 652458727 1.240000e-40 178.0
35 TraesCS7D01G254400 chr1B 80.392 204 36 4 1018 1219 242248736 242248535 7.530000e-33 152.0
36 TraesCS7D01G254400 chr1A 83.333 186 31 0 1034 1219 563685836 563685651 5.780000e-39 172.0
37 TraesCS7D01G254400 chr1A 80.392 204 36 4 1018 1219 175178823 175178622 7.530000e-33 152.0
38 TraesCS7D01G254400 chr2B 78.014 282 51 9 4052 4324 687241107 687241386 2.690000e-37 167.0
39 TraesCS7D01G254400 chr2B 76.012 321 58 13 4029 4340 359620650 359620340 9.750000e-32 148.0
40 TraesCS7D01G254400 chr5D 73.826 447 94 12 3903 4328 231223553 231223109 5.820000e-34 156.0
41 TraesCS7D01G254400 chr5D 76.316 190 43 2 1031 1219 413698368 413698556 2.770000e-17 100.0
42 TraesCS7D01G254400 chr4A 81.679 131 18 5 3636 3765 557254881 557255006 2.140000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G254400 chr7D 231379884 231384233 4349 False 8034.000000 8034 100.000000 1 4350 1 chr7D.!!$F1 4349
1 TraesCS7D01G254400 chr7B 202822648 202826649 4001 False 818.400000 2097 88.688200 1 3594 5 chr7B.!!$F1 3593
2 TraesCS7D01G254400 chr7A 244478452 244483226 4774 False 738.571429 1731 90.692429 1 4350 7 chr7A.!!$F1 4349
3 TraesCS7D01G254400 chr3B 447970729 447971392 663 False 387.000000 387 77.971000 3679 4344 1 chr3B.!!$F1 665
4 TraesCS7D01G254400 chr6D 60498319 60498826 507 True 381.000000 381 80.620000 3668 4171 1 chr6D.!!$R1 503
5 TraesCS7D01G254400 chr3D 348146081 348146744 663 False 348.000000 348 76.923000 3679 4344 1 chr3D.!!$F1 665
6 TraesCS7D01G254400 chr6A 521988405 521988979 574 False 292.000000 292 76.379000 3787 4350 1 chr6A.!!$F1 563
7 TraesCS7D01G254400 chr6B 533285794 533286468 674 False 287.000000 287 75.400000 3701 4350 1 chr6B.!!$F1 649
8 TraesCS7D01G254400 chr2A 585984979 585985608 629 False 279.000000 279 75.712000 3705 4349 1 chr2A.!!$F2 644
9 TraesCS7D01G254400 chr1D 328861451 328862071 620 False 274.000000 274 75.460000 3709 4344 1 chr1D.!!$F2 635
10 TraesCS7D01G254400 chr2D 55160171 55160698 527 False 254.000000 254 76.234000 3824 4349 1 chr2D.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 459 0.170339 GGGTTTTGTATCACTGCGGC 59.830 55.0 0.0 0.0 0.00 6.53 F
1808 2338 0.034089 GACATTGGGGGCTGCTTAGT 60.034 55.0 0.0 0.0 0.00 2.24 F
1970 2508 0.315886 TTGCAACAGCAGCCATTCTG 59.684 50.0 0.0 0.0 45.62 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 2377 0.100503 ACAAACAAGCAGACAACGGC 59.899 50.0 0.0 0.0 37.48 5.68 R
3298 3976 0.033504 GGCTGTCTTTCGAGTCACCA 59.966 55.0 0.0 0.0 0.00 4.17 R
3638 4333 0.395586 GTGGTGCATTGGGCTGGATA 60.396 55.0 0.0 0.0 45.15 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 399 5.450688 GGTGTAGGTTGATGTCACTAGCTAG 60.451 48.000 19.44 19.44 0.00 3.42
260 429 4.122046 GGCAGCTGTGTTTTGAAAAGAAT 58.878 39.130 16.64 0.00 0.00 2.40
290 459 0.170339 GGGTTTTGTATCACTGCGGC 59.830 55.000 0.00 0.00 0.00 6.53
293 462 1.302383 TTTTGTATCACTGCGGCCGG 61.302 55.000 29.38 14.21 0.00 6.13
294 463 2.173758 TTTGTATCACTGCGGCCGGA 62.174 55.000 29.38 25.47 0.00 5.14
295 464 2.585247 GTATCACTGCGGCCGGAC 60.585 66.667 29.38 12.09 0.00 4.79
296 465 4.201679 TATCACTGCGGCCGGACG 62.202 66.667 29.69 29.69 0.00 4.79
385 635 0.450184 CGCCCGTTAACAATCCTTGG 59.550 55.000 6.39 0.00 34.12 3.61
391 641 2.490509 CGTTAACAATCCTTGGGTTCCC 59.509 50.000 6.39 0.12 34.12 3.97
393 643 4.566070 CGTTAACAATCCTTGGGTTCCCTA 60.566 45.833 6.39 0.53 34.12 3.53
425 680 1.635663 CCCTTTCCGACGTGCATGAC 61.636 60.000 14.17 5.49 0.00 3.06
813 1098 1.835712 AGCAAAAGCAAGGCAGCCT 60.836 52.632 8.70 8.70 33.87 4.58
904 1315 3.935203 CACTACAAATCTCGCACATTCCT 59.065 43.478 0.00 0.00 0.00 3.36
905 1316 4.033358 CACTACAAATCTCGCACATTCCTC 59.967 45.833 0.00 0.00 0.00 3.71
906 1317 2.359900 ACAAATCTCGCACATTCCTCC 58.640 47.619 0.00 0.00 0.00 4.30
907 1318 1.672881 CAAATCTCGCACATTCCTCCC 59.327 52.381 0.00 0.00 0.00 4.30
908 1319 0.911769 AATCTCGCACATTCCTCCCA 59.088 50.000 0.00 0.00 0.00 4.37
909 1320 0.179000 ATCTCGCACATTCCTCCCAC 59.821 55.000 0.00 0.00 0.00 4.61
910 1321 0.904865 TCTCGCACATTCCTCCCACT 60.905 55.000 0.00 0.00 0.00 4.00
977 1402 3.213402 CCTCCGAGCTCGAGGGAC 61.213 72.222 36.59 0.00 43.02 4.46
990 1415 1.874739 CGAGGGACTACGAGCTAGAGG 60.875 61.905 0.00 0.00 41.55 3.69
1068 1493 4.241555 ATCATCGGGGACAGCGCC 62.242 66.667 2.29 0.00 43.33 6.53
1125 1550 1.705873 ACGAGTTCAACCTCCACTCT 58.294 50.000 0.00 0.00 35.70 3.24
1553 1980 2.815647 GCTCGCGCCTAGCTTGTT 60.816 61.111 19.26 0.00 45.59 2.83
1581 2008 5.203528 CCTAGATGGTGATTGATTGGGTTT 58.796 41.667 0.00 0.00 0.00 3.27
1591 2018 6.431234 GTGATTGATTGGGTTTAGTGTTCTCT 59.569 38.462 0.00 0.00 0.00 3.10
1594 2021 6.126863 TGATTGGGTTTAGTGTTCTCTGAT 57.873 37.500 0.00 0.00 0.00 2.90
1595 2022 7.252612 TGATTGGGTTTAGTGTTCTCTGATA 57.747 36.000 0.00 0.00 0.00 2.15
1596 2023 7.103641 TGATTGGGTTTAGTGTTCTCTGATAC 58.896 38.462 0.00 0.00 0.00 2.24
1628 2055 1.628340 AGAATTGTCACACCGGATGGA 59.372 47.619 9.46 0.00 39.21 3.41
1659 2086 3.181467 CCTGTCCTGAATCTGGATCTGAC 60.181 52.174 12.03 0.61 34.19 3.51
1681 2108 4.074970 CTCCTCATGTAAAGGCTTGTTGT 58.925 43.478 0.00 0.00 33.65 3.32
1722 2158 1.114722 TAAGGACCACGTCGGGTTGT 61.115 55.000 6.82 0.00 42.53 3.32
1744 2180 2.100584 TGTGCTAGTTGCTTGTTTTGGG 59.899 45.455 0.00 0.00 43.37 4.12
1768 2204 2.423185 CGGCATTGAAGTAGATGGCAAA 59.577 45.455 9.94 0.00 45.89 3.68
1773 2209 3.350219 TGAAGTAGATGGCAAACCCTC 57.650 47.619 0.00 0.00 33.59 4.30
1776 2212 1.840635 AGTAGATGGCAAACCCTCCTC 59.159 52.381 0.00 0.00 31.23 3.71
1777 2213 1.840635 GTAGATGGCAAACCCTCCTCT 59.159 52.381 0.00 0.00 31.23 3.69
1781 2217 2.470057 TGGCAAACCCTCCTCTTTTT 57.530 45.000 0.00 0.00 33.59 1.94
1782 2218 2.038659 TGGCAAACCCTCCTCTTTTTG 58.961 47.619 0.00 0.00 33.59 2.44
1797 2327 6.015180 TCCTCTTTTTGATTTCTGACATTGGG 60.015 38.462 0.00 0.00 0.00 4.12
1808 2338 0.034089 GACATTGGGGGCTGCTTAGT 60.034 55.000 0.00 0.00 0.00 2.24
1813 2343 0.480690 TGGGGGCTGCTTAGTTTGAA 59.519 50.000 0.00 0.00 0.00 2.69
1823 2353 6.442112 GCTGCTTAGTTTGAATTCTTCAGTT 58.558 36.000 7.05 0.00 41.38 3.16
1858 2389 0.523072 ACATCAATGCCGTTGTCTGC 59.477 50.000 0.00 0.00 38.95 4.26
1863 2394 1.032014 AATGCCGTTGTCTGCTTGTT 58.968 45.000 0.00 0.00 0.00 2.83
1877 2408 3.722147 TGCTTGTTTGTTGTTGTGTGTT 58.278 36.364 0.00 0.00 0.00 3.32
1885 2416 5.446143 TTGTTGTTGTGTGTTGAAACTCT 57.554 34.783 0.00 0.00 0.00 3.24
1892 2423 8.050778 TGTTGTGTGTTGAAACTCTAGAATTT 57.949 30.769 0.00 0.00 0.00 1.82
1905 2436 6.334202 ACTCTAGAATTTTCCTGATCGACAC 58.666 40.000 0.00 0.00 0.00 3.67
1913 2444 3.095912 TCCTGATCGACACCCTCTAAA 57.904 47.619 0.00 0.00 0.00 1.85
1915 2446 4.800023 TCCTGATCGACACCCTCTAAATA 58.200 43.478 0.00 0.00 0.00 1.40
1919 2451 4.960469 TGATCGACACCCTCTAAATACCTT 59.040 41.667 0.00 0.00 0.00 3.50
1924 2456 7.945134 TCGACACCCTCTAAATACCTTATTAC 58.055 38.462 0.00 0.00 0.00 1.89
1925 2457 7.781693 TCGACACCCTCTAAATACCTTATTACT 59.218 37.037 0.00 0.00 0.00 2.24
1953 2485 4.793071 TCGATATGGTTGTTGCAAGTTTG 58.207 39.130 0.00 0.00 0.00 2.93
1970 2508 0.315886 TTGCAACAGCAGCCATTCTG 59.684 50.000 0.00 0.00 45.62 3.02
1980 2518 3.254166 AGCAGCCATTCTGTTGTTACAAG 59.746 43.478 0.00 0.00 44.66 3.16
1981 2519 3.253188 GCAGCCATTCTGTTGTTACAAGA 59.747 43.478 0.00 0.00 44.66 3.02
1982 2520 4.261572 GCAGCCATTCTGTTGTTACAAGAA 60.262 41.667 0.00 0.00 44.66 2.52
1983 2521 5.735922 GCAGCCATTCTGTTGTTACAAGAAA 60.736 40.000 0.00 0.00 44.66 2.52
1984 2522 6.272318 CAGCCATTCTGTTGTTACAAGAAAA 58.728 36.000 0.00 0.00 38.02 2.29
1985 2523 6.198966 CAGCCATTCTGTTGTTACAAGAAAAC 59.801 38.462 0.00 0.00 38.02 2.43
1986 2524 6.096846 AGCCATTCTGTTGTTACAAGAAAACT 59.903 34.615 0.00 0.00 32.92 2.66
1987 2525 6.198966 GCCATTCTGTTGTTACAAGAAAACTG 59.801 38.462 0.00 0.00 32.92 3.16
1988 2526 7.479980 CCATTCTGTTGTTACAAGAAAACTGA 58.520 34.615 0.00 0.00 32.92 3.41
1989 2527 8.137437 CCATTCTGTTGTTACAAGAAAACTGAT 58.863 33.333 0.00 0.00 32.72 2.90
2084 2624 4.782156 TGGCCACCATTTATTCTCCATTTT 59.218 37.500 0.00 0.00 0.00 1.82
2101 2641 7.339466 TCTCCATTTTCCTTCTTAGGCAATTAC 59.661 37.037 0.00 0.00 41.69 1.89
2104 2644 7.761249 CCATTTTCCTTCTTAGGCAATTACTTG 59.239 37.037 0.00 0.00 41.69 3.16
2194 2738 3.386768 TGGCGACTTTATCTAGGATGC 57.613 47.619 0.00 0.00 0.00 3.91
2201 2745 5.189659 ACTTTATCTAGGATGCGTCACTC 57.810 43.478 8.47 0.00 0.00 3.51
2202 2746 4.890581 ACTTTATCTAGGATGCGTCACTCT 59.109 41.667 8.47 0.00 0.00 3.24
2203 2747 6.062749 ACTTTATCTAGGATGCGTCACTCTA 58.937 40.000 8.47 0.00 0.00 2.43
2204 2748 5.943706 TTATCTAGGATGCGTCACTCTAC 57.056 43.478 8.47 0.00 0.00 2.59
2205 2749 2.573369 TCTAGGATGCGTCACTCTACC 58.427 52.381 8.47 0.00 0.00 3.18
2207 2751 1.107114 AGGATGCGTCACTCTACCAG 58.893 55.000 8.47 0.00 0.00 4.00
2208 2752 1.103803 GGATGCGTCACTCTACCAGA 58.896 55.000 8.47 0.00 0.00 3.86
2209 2753 1.476891 GGATGCGTCACTCTACCAGAA 59.523 52.381 8.47 0.00 0.00 3.02
2210 2754 2.480416 GGATGCGTCACTCTACCAGAAG 60.480 54.545 8.47 0.00 0.00 2.85
2299 2893 3.710677 CCATGAAACTCAGGAGAGAGGAT 59.289 47.826 2.79 0.00 44.98 3.24
2300 2894 4.443175 CCATGAAACTCAGGAGAGAGGATG 60.443 50.000 2.79 0.00 44.98 3.51
2303 2897 5.028802 TGAAACTCAGGAGAGAGGATGATT 58.971 41.667 2.79 0.00 44.98 2.57
2328 2934 9.702253 TTCATCCTAATTATCCTAGCTACCTAG 57.298 37.037 0.00 0.00 40.64 3.02
2329 2935 8.847816 TCATCCTAATTATCCTAGCTACCTAGT 58.152 37.037 0.00 0.00 39.56 2.57
2358 2964 7.692908 TGTTATTTAGCAGACAAAGTTTTGC 57.307 32.000 4.58 3.06 41.79 3.68
2362 2968 3.591196 AGCAGACAAAGTTTTGCAACA 57.409 38.095 12.12 0.00 41.79 3.33
2370 2976 7.489113 CAGACAAAGTTTTGCAACAGACTAAAT 59.511 33.333 0.00 0.00 41.79 1.40
2371 2977 7.702348 AGACAAAGTTTTGCAACAGACTAAATC 59.298 33.333 0.00 3.02 41.79 2.17
2380 2986 4.067896 CAACAGACTAAATCAGCACCACT 58.932 43.478 0.00 0.00 0.00 4.00
2408 3021 9.290988 TGTTATTGGAACACACTAACATAACAT 57.709 29.630 6.29 0.00 44.95 2.71
2416 3029 6.472016 ACACACTAACATAACATGATGGTCA 58.528 36.000 0.00 0.00 0.00 4.02
2446 3059 4.032703 ACATTTTGTCACTTGCACTGTC 57.967 40.909 0.00 0.00 0.00 3.51
2465 3079 5.119931 TGTCTGTGTTGCACCATATTTTC 57.880 39.130 0.00 0.00 32.73 2.29
2468 3082 5.858581 GTCTGTGTTGCACCATATTTTCTTC 59.141 40.000 0.00 0.00 32.73 2.87
2482 3096 9.044150 CCATATTTTCTTCTTGTTTTGAAGCAA 57.956 29.630 0.00 0.00 40.31 3.91
2506 3120 7.602517 ATTTCTCAGAATGCTTGTACTGTAC 57.397 36.000 10.98 10.98 34.76 2.90
2515 3129 2.506865 CTTGTACTGTACGTCTCAGCG 58.493 52.381 16.94 0.00 36.50 5.18
2517 3131 1.196127 TGTACTGTACGTCTCAGCGTG 59.804 52.381 16.94 0.13 45.33 5.34
2525 3139 1.459592 ACGTCTCAGCGTGCATTTTAC 59.540 47.619 0.00 0.00 43.99 2.01
2534 3148 3.058914 AGCGTGCATTTTACAGACTGAAC 60.059 43.478 10.08 0.00 0.00 3.18
2541 3155 7.166473 GTGCATTTTACAGACTGAACTGAAAAG 59.834 37.037 10.08 1.62 40.63 2.27
2545 3159 8.519799 TTTTACAGACTGAACTGAAAAGGATT 57.480 30.769 10.08 0.00 40.63 3.01
2566 3185 4.240881 TCTTTGCTTATGCTTGATCCCT 57.759 40.909 1.96 0.00 40.48 4.20
2602 3221 0.316841 TTTGCGGCTTTTGGATGGTC 59.683 50.000 0.00 0.00 0.00 4.02
2609 3228 4.815269 CGGCTTTTGGATGGTCAAAATAA 58.185 39.130 3.68 0.00 43.11 1.40
2638 3257 7.837689 AGATTGGATTGGTATGGATAATGGATG 59.162 37.037 0.00 0.00 0.00 3.51
2644 3263 7.489239 TTGGTATGGATAATGGATGTATCGA 57.511 36.000 0.00 0.00 0.00 3.59
2661 3293 3.328382 TCGAAAGGTATCCACTGTTGG 57.672 47.619 0.00 0.00 45.56 3.77
2711 3353 5.879237 TGATGTTATGATTTTCTTCGTGCC 58.121 37.500 0.00 0.00 0.00 5.01
2713 3355 5.697473 TGTTATGATTTTCTTCGTGCCAA 57.303 34.783 0.00 0.00 0.00 4.52
2745 3387 7.454694 TGCACCATCCAACTACTAGTGATATAT 59.545 37.037 5.39 0.00 0.00 0.86
2746 3388 7.761704 GCACCATCCAACTACTAGTGATATATG 59.238 40.741 5.39 2.72 0.00 1.78
2769 3411 8.851541 ATGTGATAATTTGGTTTCATTTTGCT 57.148 26.923 0.00 0.00 0.00 3.91
2793 3436 9.639601 GCTAACTTAAAAGCAACAAATCCTATT 57.360 29.630 0.00 0.00 38.63 1.73
2802 3471 4.142381 GCAACAAATCCTATTCCTTTCGCT 60.142 41.667 0.00 0.00 0.00 4.93
2813 3482 0.317160 CCTTTCGCTTTTTGTCCCCC 59.683 55.000 0.00 0.00 0.00 5.40
2814 3483 1.036707 CTTTCGCTTTTTGTCCCCCA 58.963 50.000 0.00 0.00 0.00 4.96
2832 3501 3.119849 CCCCAGACGCATTTTCTACTTTG 60.120 47.826 0.00 0.00 0.00 2.77
2840 3509 4.090354 CGCATTTTCTACTTTGCATGGTTG 59.910 41.667 0.00 0.00 34.80 3.77
2845 3514 4.829064 TCTACTTTGCATGGTTGTGTTC 57.171 40.909 0.00 0.00 0.00 3.18
2867 3536 4.080695 TCTCTTGCTTGATGGCTATCACTT 60.081 41.667 12.90 0.00 42.79 3.16
2868 3537 4.592942 TCTTGCTTGATGGCTATCACTTT 58.407 39.130 12.90 0.00 42.79 2.66
2876 3545 7.009907 GCTTGATGGCTATCACTTTTTGATTTC 59.990 37.037 12.90 0.00 42.87 2.17
2919 3588 3.607422 TGACAAGTCATTTCTTGCACG 57.393 42.857 0.00 0.00 45.86 5.34
2929 3598 2.842208 TTCTTGCACGTCTGGTTTTG 57.158 45.000 0.00 0.00 0.00 2.44
2933 3602 0.931702 TGCACGTCTGGTTTTGTACG 59.068 50.000 0.00 0.00 40.99 3.67
3016 3694 5.047802 TCCTCTGAAGTAACCGAAACGTATT 60.048 40.000 0.00 0.00 0.00 1.89
3046 3724 2.195741 ATGCAGCACATTCTGACACT 57.804 45.000 0.00 0.00 34.40 3.55
3169 3847 0.551396 TCATGGAGACCTCGGCTCTA 59.449 55.000 0.00 0.00 32.98 2.43
3254 3932 1.825474 GGAAGATCCTGAACTCCGACA 59.175 52.381 0.00 0.00 32.53 4.35
3256 3934 2.223803 AGATCCTGAACTCCGACACT 57.776 50.000 0.00 0.00 0.00 3.55
3292 3970 3.658398 CCTCAACAGGGTGAGCATT 57.342 52.632 8.84 0.00 43.18 3.56
3298 3976 0.615331 ACAGGGTGAGCATTGACGAT 59.385 50.000 0.00 0.00 0.00 3.73
3314 3992 1.611977 ACGATGGTGACTCGAAAGACA 59.388 47.619 1.13 0.00 39.38 3.41
3380 4058 4.020039 TGGTACATTGTCGACTATTGGGTT 60.020 41.667 17.92 0.00 0.00 4.11
3383 4061 5.371115 ACATTGTCGACTATTGGGTTTTG 57.629 39.130 17.92 4.38 0.00 2.44
3528 4222 3.385111 AGAGTGGAGACGAACTGTTTCTT 59.615 43.478 0.00 0.00 32.43 2.52
3532 4226 3.069016 TGGAGACGAACTGTTTCTTGCTA 59.931 43.478 0.00 0.00 32.43 3.49
3597 4292 0.254747 TTTTATGGGAGGTCAGGGCG 59.745 55.000 0.00 0.00 0.00 6.13
3621 4316 2.361104 ATCCGGTGCGCCAAATGT 60.361 55.556 18.18 0.00 34.09 2.71
3630 4325 1.798735 CGCCAAATGTCTGCCTCTG 59.201 57.895 0.00 0.00 0.00 3.35
3634 4329 2.036346 GCCAAATGTCTGCCTCTGTTTT 59.964 45.455 0.00 0.00 0.00 2.43
3636 4331 3.553508 CCAAATGTCTGCCTCTGTTTTGG 60.554 47.826 0.00 0.00 36.68 3.28
3644 4339 2.019984 GCCTCTGTTTTGGCTATCCAG 58.980 52.381 0.00 0.00 44.53 3.86
3653 4348 4.585070 GCTATCCAGCCCAATGCA 57.415 55.556 0.00 0.00 44.83 3.96
3658 4353 3.384532 CCAGCCCAATGCACCACC 61.385 66.667 0.00 0.00 44.83 4.61
3677 4372 1.134946 CCGAATGATTGCCCCTGTTTC 59.865 52.381 0.00 0.00 0.00 2.78
3874 4785 5.371115 TTTTTAGTCTTCCATTGAAGCGG 57.629 39.130 1.62 0.00 46.28 5.52
3891 4802 4.963815 GGCACAAATGTCCAACCG 57.036 55.556 0.00 0.00 0.00 4.44
3988 4908 3.582998 TGGATTCTGCCTTTGATAGGG 57.417 47.619 0.00 0.00 44.91 3.53
4112 5052 6.072175 TGTCTTTGCATCCCATAGTTTTGTAC 60.072 38.462 0.00 0.00 0.00 2.90
4345 5319 0.673437 CCCGCACACAACCTTCAAAT 59.327 50.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.885735 ACTCAAGTTTGTTTTTGTACATGC 57.114 33.333 0.00 0.00 0.00 4.06
94 99 8.532977 TTTCTAAAAGAAAATAACATGGCAGC 57.467 30.769 0.00 0.00 40.89 5.25
234 403 1.067916 CAAAACACAGCTGCCCACC 59.932 57.895 15.27 0.00 0.00 4.61
260 429 8.735315 CAGTGATACAAAACCCAATGTATGTTA 58.265 33.333 3.37 0.00 41.53 2.41
290 459 1.126113 CACGAATCTTTCAACGTCCGG 59.874 52.381 0.00 0.00 36.86 5.14
293 462 2.941891 TGCACGAATCTTTCAACGTC 57.058 45.000 0.00 0.00 36.86 4.34
294 463 2.981875 GTTGCACGAATCTTTCAACGT 58.018 42.857 0.00 0.00 39.53 3.99
391 641 3.696548 GGAAAGGGAAAGTGCCATTCTAG 59.303 47.826 4.19 0.00 29.27 2.43
393 643 2.529632 GGAAAGGGAAAGTGCCATTCT 58.470 47.619 4.19 0.00 29.27 2.40
425 680 3.081061 TCCATTCAACGATTGGTCTTGG 58.919 45.455 0.00 0.00 35.38 3.61
546 814 4.087892 GCTTGGAGGCTGCTCCGA 62.088 66.667 7.74 3.93 46.18 4.55
934 1345 3.578515 TTTCCGCTTCCGTCGTCCC 62.579 63.158 0.00 0.00 0.00 4.46
935 1346 2.048877 TTTCCGCTTCCGTCGTCC 60.049 61.111 0.00 0.00 0.00 4.79
977 1402 0.814410 TCGGTGCCTCTAGCTCGTAG 60.814 60.000 0.00 0.00 44.23 3.51
990 1415 3.407967 TCCCCCATCCTTCGGTGC 61.408 66.667 0.00 0.00 0.00 5.01
1068 1493 2.281761 AGGTTGCTCTTGCCCACG 60.282 61.111 0.00 0.00 38.71 4.94
1553 1980 2.107366 TCAATCACCATCTAGGCGTCA 58.893 47.619 0.00 0.00 43.14 4.35
1581 2008 7.993758 ACTGCTATGTAGTATCAGAGAACACTA 59.006 37.037 0.00 0.00 32.25 2.74
1591 2018 9.131791 TGACAATTCTACTGCTATGTAGTATCA 57.868 33.333 10.31 0.00 40.39 2.15
1594 2021 8.188799 GTGTGACAATTCTACTGCTATGTAGTA 58.811 37.037 10.31 0.00 40.39 1.82
1595 2022 7.036220 GTGTGACAATTCTACTGCTATGTAGT 58.964 38.462 10.31 0.00 40.39 2.73
1596 2023 6.477033 GGTGTGACAATTCTACTGCTATGTAG 59.523 42.308 0.00 5.99 40.75 2.74
1628 2055 1.488705 TTCAGGACAGGTCGCCCAAT 61.489 55.000 0.00 0.00 0.00 3.16
1659 2086 4.074970 ACAACAAGCCTTTACATGAGGAG 58.925 43.478 0.00 0.00 36.33 3.69
1681 2108 3.074390 ACATCCACTCCTCAAACATTCCA 59.926 43.478 0.00 0.00 0.00 3.53
1744 2180 2.032178 GCCATCTACTTCAATGCCGAAC 59.968 50.000 0.00 0.00 0.00 3.95
1768 2204 5.073428 GTCAGAAATCAAAAAGAGGAGGGT 58.927 41.667 0.00 0.00 0.00 4.34
1773 2209 6.161381 CCCAATGTCAGAAATCAAAAAGAGG 58.839 40.000 0.00 0.00 0.00 3.69
1776 2212 5.240121 CCCCCAATGTCAGAAATCAAAAAG 58.760 41.667 0.00 0.00 0.00 2.27
1777 2213 4.504689 GCCCCCAATGTCAGAAATCAAAAA 60.505 41.667 0.00 0.00 0.00 1.94
1781 2217 1.358787 AGCCCCCAATGTCAGAAATCA 59.641 47.619 0.00 0.00 0.00 2.57
1782 2218 1.753073 CAGCCCCCAATGTCAGAAATC 59.247 52.381 0.00 0.00 0.00 2.17
1797 2327 4.738124 GAAGAATTCAAACTAAGCAGCCC 58.262 43.478 8.44 0.00 46.62 5.19
1835 2365 2.884012 AGACAACGGCATTGATGTTTCA 59.116 40.909 0.00 0.00 41.23 2.69
1836 2366 3.236816 CAGACAACGGCATTGATGTTTC 58.763 45.455 0.00 0.00 41.23 2.78
1837 2367 2.607771 GCAGACAACGGCATTGATGTTT 60.608 45.455 0.00 0.00 41.23 2.83
1839 2369 0.523072 GCAGACAACGGCATTGATGT 59.477 50.000 0.00 0.00 41.23 3.06
1840 2370 0.806868 AGCAGACAACGGCATTGATG 59.193 50.000 0.00 0.00 41.23 3.07
1841 2371 1.200716 CAAGCAGACAACGGCATTGAT 59.799 47.619 0.00 0.00 41.23 2.57
1842 2372 0.592637 CAAGCAGACAACGGCATTGA 59.407 50.000 0.00 0.00 41.23 2.57
1843 2373 0.311790 ACAAGCAGACAACGGCATTG 59.688 50.000 0.00 0.00 44.60 2.82
1845 2375 1.032014 AAACAAGCAGACAACGGCAT 58.968 45.000 0.00 0.00 39.53 4.40
1847 2377 0.100503 ACAAACAAGCAGACAACGGC 59.899 50.000 0.00 0.00 37.48 5.68
1858 2389 5.896922 TTCAACACACAACAACAAACAAG 57.103 34.783 0.00 0.00 0.00 3.16
1863 2394 5.446143 AGAGTTTCAACACACAACAACAA 57.554 34.783 0.00 0.00 0.00 2.83
1877 2408 7.545965 GTCGATCAGGAAAATTCTAGAGTTTCA 59.454 37.037 22.57 10.43 33.76 2.69
1885 2416 4.469945 AGGGTGTCGATCAGGAAAATTCTA 59.530 41.667 0.00 0.00 0.00 2.10
1892 2423 2.820728 TAGAGGGTGTCGATCAGGAA 57.179 50.000 0.00 0.00 0.00 3.36
1924 2456 6.603237 TGCAACAACCATATCGATAAAGAG 57.397 37.500 9.61 1.35 0.00 2.85
1925 2457 6.597672 ACTTGCAACAACCATATCGATAAAGA 59.402 34.615 9.61 0.00 0.00 2.52
1953 2485 4.883026 CAGAATGGCTGCTGTTGC 57.117 55.556 0.00 0.00 37.90 4.17
1961 2493 6.096846 AGTTTTCTTGTAACAACAGAATGGCT 59.903 34.615 0.00 0.00 43.62 4.75
1962 2494 6.198966 CAGTTTTCTTGTAACAACAGAATGGC 59.801 38.462 0.00 0.00 43.62 4.40
1981 2519 9.228949 GGAATCATGCTCTCATATATCAGTTTT 57.771 33.333 0.00 0.00 0.00 2.43
1982 2520 8.380867 TGGAATCATGCTCTCATATATCAGTTT 58.619 33.333 0.00 0.00 0.00 2.66
1983 2521 7.914859 TGGAATCATGCTCTCATATATCAGTT 58.085 34.615 0.00 0.00 0.00 3.16
1984 2522 7.180587 ACTGGAATCATGCTCTCATATATCAGT 59.819 37.037 0.00 0.00 0.00 3.41
1985 2523 7.557724 ACTGGAATCATGCTCTCATATATCAG 58.442 38.462 0.00 0.00 0.00 2.90
1986 2524 7.179694 TGACTGGAATCATGCTCTCATATATCA 59.820 37.037 0.00 0.00 0.00 2.15
1987 2525 7.492020 GTGACTGGAATCATGCTCTCATATATC 59.508 40.741 0.00 0.00 0.00 1.63
1988 2526 7.329499 GTGACTGGAATCATGCTCTCATATAT 58.671 38.462 0.00 0.00 0.00 0.86
1989 2527 6.571150 CGTGACTGGAATCATGCTCTCATATA 60.571 42.308 0.00 0.00 0.00 0.86
1990 2528 5.549347 GTGACTGGAATCATGCTCTCATAT 58.451 41.667 0.00 0.00 0.00 1.78
1991 2529 4.500375 CGTGACTGGAATCATGCTCTCATA 60.500 45.833 0.00 0.00 0.00 2.15
1992 2530 3.740452 CGTGACTGGAATCATGCTCTCAT 60.740 47.826 0.00 0.00 0.00 2.90
1993 2531 2.417787 CGTGACTGGAATCATGCTCTCA 60.418 50.000 0.00 0.00 0.00 3.27
1994 2532 2.200067 CGTGACTGGAATCATGCTCTC 58.800 52.381 0.00 0.00 0.00 3.20
1995 2533 2.306341 CGTGACTGGAATCATGCTCT 57.694 50.000 0.00 0.00 0.00 4.09
1999 2537 4.393062 ACTTAAAGCGTGACTGGAATCATG 59.607 41.667 0.00 0.00 38.44 3.07
2057 2597 2.099756 GAGAATAAATGGTGGCCAGCAC 59.900 50.000 38.27 24.14 42.02 4.40
2061 2601 3.686227 ATGGAGAATAAATGGTGGCCA 57.314 42.857 0.00 0.00 38.19 5.36
2104 2644 2.222007 TGTTTCCAACAGCAACATGC 57.778 45.000 0.00 0.00 45.46 4.06
2194 2738 0.173708 GCCCTTCTGGTAGAGTGACG 59.826 60.000 0.00 0.00 36.04 4.35
2201 2745 1.815003 CAAGCTTTGCCCTTCTGGTAG 59.185 52.381 0.00 0.00 36.04 3.18
2202 2746 1.547675 CCAAGCTTTGCCCTTCTGGTA 60.548 52.381 0.00 0.00 36.04 3.25
2203 2747 0.829182 CCAAGCTTTGCCCTTCTGGT 60.829 55.000 0.00 0.00 36.04 4.00
2204 2748 0.829182 ACCAAGCTTTGCCCTTCTGG 60.829 55.000 0.00 0.00 37.09 3.86
2205 2749 0.316204 CACCAAGCTTTGCCCTTCTG 59.684 55.000 0.00 0.00 0.00 3.02
2207 2751 1.616159 TACACCAAGCTTTGCCCTTC 58.384 50.000 0.00 0.00 0.00 3.46
2208 2752 1.963515 CTTACACCAAGCTTTGCCCTT 59.036 47.619 0.00 0.00 0.00 3.95
2209 2753 1.144913 TCTTACACCAAGCTTTGCCCT 59.855 47.619 0.00 0.00 33.94 5.19
2210 2754 1.541588 CTCTTACACCAAGCTTTGCCC 59.458 52.381 0.00 0.00 33.94 5.36
2299 2893 8.982723 GGTAGCTAGGATAATTAGGATGAATCA 58.017 37.037 0.00 0.00 0.00 2.57
2300 2894 9.207868 AGGTAGCTAGGATAATTAGGATGAATC 57.792 37.037 0.00 0.00 0.00 2.52
2303 2897 8.847816 ACTAGGTAGCTAGGATAATTAGGATGA 58.152 37.037 27.89 0.00 0.00 2.92
2332 2938 8.764287 GCAAAACTTTGTCTGCTAAATAACAAT 58.236 29.630 4.23 0.00 40.24 2.71
2342 2948 3.193267 TCTGTTGCAAAACTTTGTCTGCT 59.807 39.130 0.00 0.00 40.24 4.24
2346 2952 7.487829 TGATTTAGTCTGTTGCAAAACTTTGTC 59.512 33.333 13.64 10.29 40.24 3.18
2358 2964 4.067896 AGTGGTGCTGATTTAGTCTGTTG 58.932 43.478 0.00 0.00 0.00 3.33
2395 3008 7.376435 TGTTGACCATCATGTTATGTTAGTG 57.624 36.000 0.00 0.00 0.00 2.74
2408 3021 8.954950 ACAAAATGTAAAATTGTTGACCATCA 57.045 26.923 0.00 0.00 33.73 3.07
2416 3029 8.174422 GTGCAAGTGACAAAATGTAAAATTGTT 58.826 29.630 0.00 0.00 37.41 2.83
2446 3059 6.017400 AGAAGAAAATATGGTGCAACACAG 57.983 37.500 6.58 0.00 39.98 3.66
2454 3067 8.490355 GCTTCAAAACAAGAAGAAAATATGGTG 58.510 33.333 7.08 0.00 44.00 4.17
2455 3068 8.203485 TGCTTCAAAACAAGAAGAAAATATGGT 58.797 29.630 7.08 0.00 44.00 3.55
2465 3079 7.703621 TCTGAGAAATTGCTTCAAAACAAGAAG 59.296 33.333 0.00 0.00 44.08 2.85
2468 3082 7.760131 TTCTGAGAAATTGCTTCAAAACAAG 57.240 32.000 0.00 0.00 36.40 3.16
2482 3096 6.311445 CGTACAGTACAAGCATTCTGAGAAAT 59.689 38.462 11.37 0.00 0.00 2.17
2506 3120 1.459209 TGTAAAATGCACGCTGAGACG 59.541 47.619 0.00 0.00 39.50 4.18
2515 3129 5.673337 TCAGTTCAGTCTGTAAAATGCAC 57.327 39.130 0.00 0.00 36.85 4.57
2517 3131 6.638468 CCTTTTCAGTTCAGTCTGTAAAATGC 59.362 38.462 0.00 0.00 35.49 3.56
2525 3139 6.874288 AAGAATCCTTTTCAGTTCAGTCTG 57.126 37.500 0.00 0.00 36.85 3.51
2534 3148 6.628185 AGCATAAGCAAAGAATCCTTTTCAG 58.372 36.000 0.00 0.00 45.49 3.02
2541 3155 5.508657 GGGATCAAGCATAAGCAAAGAATCC 60.509 44.000 0.00 0.00 45.49 3.01
2545 3159 4.240881 AGGGATCAAGCATAAGCAAAGA 57.759 40.909 0.00 0.00 45.49 2.52
2566 3185 4.083537 CCGCAAAAGCATTACACACTTCTA 60.084 41.667 0.00 0.00 0.00 2.10
2587 3206 2.810439 TTTTGACCATCCAAAAGCCG 57.190 45.000 0.00 0.00 40.04 5.52
2609 3228 9.705103 CCATTATCCATACCAATCCAATCTAAT 57.295 33.333 0.00 0.00 0.00 1.73
2618 3237 8.204160 TCGATACATCCATTATCCATACCAATC 58.796 37.037 0.00 0.00 0.00 2.67
2621 3240 7.489239 TTCGATACATCCATTATCCATACCA 57.511 36.000 0.00 0.00 0.00 3.25
2625 3244 7.020827 ACCTTTCGATACATCCATTATCCAT 57.979 36.000 0.00 0.00 0.00 3.41
2638 3257 5.968387 CAACAGTGGATACCTTTCGATAC 57.032 43.478 0.00 0.00 0.00 2.24
2661 3293 7.040201 ACCATCATAAGCACAATGTTATCCATC 60.040 37.037 0.00 0.00 31.75 3.51
2664 3296 6.639632 ACCATCATAAGCACAATGTTATCC 57.360 37.500 0.00 0.00 0.00 2.59
2711 3353 4.261578 AGTTGGATGGTGCAAGAAATTG 57.738 40.909 0.00 0.00 0.00 2.32
2713 3355 4.666512 AGTAGTTGGATGGTGCAAGAAAT 58.333 39.130 0.00 0.00 0.00 2.17
2745 3387 9.770097 TTAGCAAAATGAAACCAAATTATCACA 57.230 25.926 0.00 0.00 0.00 3.58
2783 3425 6.868339 ACAAAAAGCGAAAGGAATAGGATTTG 59.132 34.615 0.00 0.00 0.00 2.32
2789 3432 4.380550 GGGGACAAAAAGCGAAAGGAATAG 60.381 45.833 0.00 0.00 0.00 1.73
2793 3436 1.324383 GGGGACAAAAAGCGAAAGGA 58.676 50.000 0.00 0.00 0.00 3.36
2802 3471 0.178975 ATGCGTCTGGGGGACAAAAA 60.179 50.000 0.00 0.00 44.70 1.94
2813 3482 4.145876 TGCAAAGTAGAAAATGCGTCTG 57.854 40.909 0.00 0.00 41.61 3.51
2814 3483 4.379813 CCATGCAAAGTAGAAAATGCGTCT 60.380 41.667 0.00 0.00 41.61 4.18
2832 3501 1.610522 AGCAAGAGAACACAACCATGC 59.389 47.619 0.00 0.00 0.00 4.06
2840 3509 2.157738 AGCCATCAAGCAAGAGAACAC 58.842 47.619 0.00 0.00 34.23 3.32
2845 3514 3.806380 AGTGATAGCCATCAAGCAAGAG 58.194 45.455 0.00 0.00 42.79 2.85
2867 3536 7.432869 CACAAGGGACATGTAAGAAATCAAAA 58.567 34.615 0.00 0.00 38.63 2.44
2868 3537 6.516527 GCACAAGGGACATGTAAGAAATCAAA 60.517 38.462 0.00 0.00 38.63 2.69
2876 3545 2.744202 GACTGCACAAGGGACATGTAAG 59.256 50.000 0.00 0.00 38.63 2.34
2911 3580 1.745232 ACAAAACCAGACGTGCAAGA 58.255 45.000 6.65 0.00 0.00 3.02
2919 3588 0.237498 GCAGCCGTACAAAACCAGAC 59.763 55.000 0.00 0.00 0.00 3.51
2933 3602 3.782889 AATATCAAGGAAAACGCAGCC 57.217 42.857 0.00 0.00 0.00 4.85
3016 3694 5.884232 AGAATGTGCTGCATTAGATTTGAGA 59.116 36.000 5.27 0.00 46.90 3.27
3046 3724 0.322098 CCAACATCTTGGCCACCGTA 60.322 55.000 3.88 0.00 40.79 4.02
3169 3847 0.659427 TGTTGACGTTCGTCGAGTCT 59.341 50.000 18.11 0.00 42.86 3.24
3254 3932 1.413077 GGATAGCTCGGCCTTGTAAGT 59.587 52.381 0.00 0.00 0.00 2.24
3256 3934 0.756903 GGGATAGCTCGGCCTTGTAA 59.243 55.000 0.00 0.00 0.00 2.41
3292 3970 1.883926 TCTTTCGAGTCACCATCGTCA 59.116 47.619 0.00 0.00 40.95 4.35
3298 3976 0.033504 GGCTGTCTTTCGAGTCACCA 59.966 55.000 0.00 0.00 0.00 4.17
3314 3992 0.674895 CGGCTAGTTTGCTTCTGGCT 60.675 55.000 10.14 0.00 42.39 4.75
3380 4058 5.486735 AAAAATCATCACATCCCAGCAAA 57.513 34.783 0.00 0.00 0.00 3.68
3528 4222 3.181491 GCATGGCTTTTCGGTTAATAGCA 60.181 43.478 0.00 0.00 42.15 3.49
3532 4226 1.134175 CCGCATGGCTTTTCGGTTAAT 59.866 47.619 0.00 0.00 37.33 1.40
3603 4298 2.102749 CATTTGGCGCACCGGATG 59.897 61.111 9.46 3.68 39.70 3.51
3638 4333 0.395586 GTGGTGCATTGGGCTGGATA 60.396 55.000 0.00 0.00 45.15 2.59
3644 4339 2.350458 ATTCGGTGGTGCATTGGGC 61.350 57.895 0.00 0.00 45.13 5.36
3650 4345 1.594194 GGCAATCATTCGGTGGTGCA 61.594 55.000 14.74 0.00 39.54 4.57
3653 4348 1.379843 GGGGCAATCATTCGGTGGT 60.380 57.895 0.00 0.00 0.00 4.16
3658 4353 2.094675 AGAAACAGGGGCAATCATTCG 58.905 47.619 0.00 0.00 0.00 3.34
3677 4372 4.962155 AGTGCTCCGGATATAGGAAAAAG 58.038 43.478 3.57 0.00 37.32 2.27
3874 4785 1.175983 TCCGGTTGGACATTTGTGCC 61.176 55.000 0.00 0.00 40.17 5.01
3891 4802 6.462768 ACTCATGAGTAGCTTCAGAATGATCC 60.463 42.308 26.87 0.00 42.54 3.36
3988 4908 5.298777 CCTGGAATTTGAGGAGATGAATGAC 59.701 44.000 0.00 0.00 0.00 3.06
4060 5000 2.609491 GGACGTGATGACAGCTTGTGTA 60.609 50.000 0.00 0.00 40.56 2.90
4112 5052 1.492319 TTTGCGGTTGTTCGAGGACG 61.492 55.000 0.00 0.00 41.26 4.79
4171 5131 1.680249 GCCCAAAGACAAGGAGCTAGG 60.680 57.143 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.